@gsep/core 0.8.0

package/dist/wrap/GenomeBuilder.js

@@ -0,0 +1,223 @@
+export class GenomeBuilder {
+    static build(options) {
+        const now = new Date();
+        const genomeId = `wrap_${Date.now()}_${Math.random().toString(36).substr(2, 9)}`;
+        const layer0 = GenomeBuilder.buildLayer0(options);
+        const layer1 = GenomeBuilder.buildLayer1(options);
+        const layer2 = GenomeBuilder.buildLayer2(options);
+        const autonomous = {
+            continuousEvolution: true,
+            evolveEveryN: options.evolution?.evolveEveryN ?? 10,
+            autoMutateOnDrift: options.evolution?.autoMutateOnDrift ?? true,
+            autoCompressOnPressure: options.evolution?.autoCompressOnPressure ?? true,
+            enableSwarm: options.evolution?.enableSwarm ?? false,
+            enableSelfModel: options.enableSelfModel ?? false,
+            enableMetacognition: options.enableMetacognition ?? false,
+            enableEmotionalModel: options.enableEmotionalModel ?? false,
+            agentPurpose: options.agentPurpose ?? options.systemPrompt.split('\n')[0].slice(0, 200),
+        };
+        const config = {
+            enableSandbox: true,
+            mutationRate: GenomeBuilder.mapMutationRate(options.evolution?.mode),
+            gsepVisibility: options.gsepVisibility ?? 'subtle',
+            autonomous,
+        };
+        return {
+            id: genomeId,
+            name: options.name ?? 'wrapped-agent',
+            config,
+            layers: { layer0, layer1, layer2 },
+            familyId: options.familyId,
+            version: 1,
+            createdAt: now,
+            updatedAt: now,
+        };
+    }
+    static buildLayer0(options) {
+        const now = new Date();
+        const alleles = [];
+        if (options.protect && options.protect.length > 0) {
+            for (const [i, rule] of options.protect.entries()) {
+                alleles.push({
+                    gene: i === 0 ? 'core-identity' : `security-rule-${i}`,
+                    variant: 'default',
+                    content: rule,
+                    fitness: 0.5,
+                    status: 'active',
+                    createdAt: now,
+                });
+            }
+        }
+        else {
+            const firstParagraph = options.systemPrompt.split('\n\n')[0] || options.systemPrompt;
+            alleles.push({
+                gene: 'core-identity',
+                variant: 'default',
+                content: firstParagraph,
+                fitness: 0.5,
+                status: 'active',
+                createdAt: now,
+            });
+            const immutablePattern = /^(NEVER|ALWAYS|MUST|DO NOT|FORBIDDEN|PROHIBITED)/i;
+            const rules = options.systemPrompt
+                .split('\n')
+                .filter(l => immutablePattern.test(l.trim()))
+                .map(l => l.trim());
+            if (rules.length > 0) {
+                alleles.push({
+                    gene: 'security-gate',
+                    variant: 'default',
+                    content: rules.join('\n'),
+                    fitness: 0.5,
+                    status: 'active',
+                    createdAt: now,
+                });
+            }
+        }
+        if (alleles.length < 2) {
+            alleles.push({
+                gene: 'ethics',
+                variant: 'default',
+                content: 'Be helpful, harmless, and honest. Respect user privacy.',
+                fitness: 0.5,
+                status: 'active',
+                createdAt: now,
+            });
+        }
+        return alleles;
+    }
+    static buildLayer1(options) {
+        const now = new Date();
+        const alleles = [];
+        if (options.evolve && options.evolve.length > 0) {
+            for (const item of options.evolve) {
+                if (typeof item === 'string') {
+                    const category = GenomeBuilder.categorizeGene(item);
+                    alleles.push({
+                        gene: category,
+                        variant: 'default',
+                        content: item,
+                        fitness: 0.5,
+                        status: 'active',
+                        createdAt: now,
+                    });
+                }
+                else {
+                    alleles.push({
+                        gene: item.category,
+                        variant: 'default',
+                        content: item.content,
+                        fitness: 0.5,
+                        status: 'active',
+                        createdAt: now,
+                    });
+                }
+            }
+        }
+        else {
+            const immutablePattern = /^(NEVER|ALWAYS|MUST|DO NOT|FORBIDDEN|PROHIBITED)/i;
+            const firstParaEnd = options.systemPrompt.indexOf('\n\n');
+            const operativeContent = firstParaEnd > -1
+                ? options.systemPrompt.slice(firstParaEnd + 2)
+                : '';
+            const operativeLines = operativeContent
+                .split('\n')
+                .filter(l => l.trim().length > 10)
+                .filter(l => !immutablePattern.test(l.trim()));
+            if (operativeLines.length > 0) {
+                const chunks = GenomeBuilder.chunkContent(operativeLines.join('\n'), 3);
+                for (const chunk of chunks) {
+                    const category = GenomeBuilder.categorizeGene(chunk);
+                    alleles.push({
+                        gene: category,
+                        variant: 'default',
+                        content: chunk,
+                        fitness: 0.5,
+                        status: 'active',
+                        createdAt: now,
+                    });
+                }
+            }
+        }
+        if (alleles.length === 0) {
+            alleles.push({
+                gene: 'reasoning',
+                variant: 'default',
+                content: 'Think step-by-step and provide clear, accurate responses.',
+                fitness: 0.5,
+                status: 'active',
+                createdAt: now,
+            });
+        }
+        return alleles;
+    }
+    static buildLayer2(options) {
+        const now = new Date();
+        const alleles = [];
+        if (options.adapt && options.adapt.length > 0) {
+            for (const item of options.adapt) {
+                if (typeof item === 'string') {
+                    alleles.push({
+                        gene: `adapt-${item.toLowerCase().replace(/\s+/g, '-')}`,
+                        variant: 'default',
+                        content: `Adapt ${item} based on user preferences and context.`,
+                        fitness: 0.5,
+                        status: 'active',
+                        createdAt: now,
+                    });
+                }
+                else {
+                    alleles.push({
+                        gene: `adapt-${item.trait}`,
+                        variant: 'default',
+                        content: item.content,
+                        fitness: 0.5,
+                        status: 'active',
+                        createdAt: now,
+                    });
+                }
+            }
+        }
+        else {
+            alleles.push({
+                gene: 'communication-style',
+                variant: 'default',
+                content: 'Communicate clearly and adapt to user preferences.',
+                fitness: 0.5,
+                status: 'active',
+                createdAt: now,
+            });
+        }
+        return alleles;
+    }
+    static categorizeGene(content) {
+        const lower = content.toLowerCase();
+        if (/tool|api|function|endpoint|call|invoke/.test(lower))
+            return 'tool-usage';
+        if (/code|program|syntax|debug|implement|refactor/.test(lower))
+            return 'coding-patterns';
+        if (/data|parse|transform|format|csv|json|schema/.test(lower))
+            return 'data-processing';
+        if (/error|exception|retry|fallback|recover|handle/.test(lower))
+            return 'error-handling';
+        if (/tone|style|write|communicate|format.*response|verbose/.test(lower))
+            return 'communication';
+        return 'reasoning';
+    }
+    static chunkContent(content, maxChunks) {
+        const paragraphs = content.split('\n\n').filter(p => p.trim().length > 0);
+        if (paragraphs.length <= maxChunks)
+            return paragraphs;
+        const result = paragraphs.slice(0, maxChunks - 1);
+        result.push(paragraphs.slice(maxChunks - 1).join('\n\n'));
+        return result;
+    }
+    static mapMutationRate(mode) {
+        if (mode === 'conservative')
+            return 'slow';
+        if (mode === 'aggressive')
+            return 'aggressive';
+        return 'balanced';
+    }
+}
+//# sourceMappingURL=GenomeBuilder.js.map

package/dist/wrap/GenomeBuilder.js.map

@@ -0,0 +1 @@
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package/dist/wrap/InMemoryStorageAdapter.d.ts

@@ -0,0 +1,97 @@
+import type { StorageAdapter } from '../interfaces/StorageAdapter.js';
+import type { Genome, UserDNA, MutationLog, GeneRegistryEntry } from '../types/index.js';
+import type { SemanticFact } from '../memory/LayeredMemory.js';
+export declare class InMemoryStorageAdapter implements StorageAdapter {
+    private genomes;
+    private dna;
+    private mutations;
+    private interactions;
+    private feedbackRecords;
+    private facts;
+    private factIndex;
+    private geneRegistry;
+    private calibrationPoints;
+    private readonly maxEntries;
+    constructor(options?: {
+        maxEntries?: number;
+    });
+    initialize(): Promise<void>;
+    private trimArray;
+    saveGenome(genome: Genome): Promise<void>;
+    loadGenome(genomeId: string): Promise<Genome | null>;
+    deleteGenome(genomeId: string): Promise<void>;
+    listGenomes(): Promise<Genome[]>;
+    saveDNA(userId: string, genomeId: string, dna: UserDNA): Promise<void>;
+    loadDNA(userId: string, genomeId: string): Promise<UserDNA | null>;
+    logMutation(mutation: MutationLog): Promise<void>;
+    getMutationHistory(genomeId: string, limit?: number): Promise<MutationLog[]>;
+    getGeneMutationHistory(genomeId: string, gene: string, limit?: number): Promise<MutationLog[]>;
+    recordInteraction(interaction: {
+        genomeId: string;
+        userId: string;
+        userMessage: string;
+        assistantResponse: string;
+        toolCalls: unknown[];
+        score?: number;
+        timestamp: Date;
+    }): Promise<void>;
+    getRecentInteractions(genomeId: string, userId: string, limit?: number): Promise<unknown[]>;
+    recordFeedback(feedback: {
+        genomeId: string;
+        userId: string;
+        gene: string;
+        sentiment: 'positive' | 'negative' | 'neutral';
+        timestamp: Date;
+    }): Promise<void>;
+    getAnalytics(genomeId: string): Promise<{
+        totalMutations: number;
+        totalInteractions: number;
+        avgFitnessImprovement: number;
+        userSatisfaction: number;
+        topGenes: Array<{
+            gene: string;
+            fitness: number;
+        }>;
+    }>;
+    saveFact(fact: SemanticFact, userId: string, genomeId: string): Promise<void>;
+    getFacts(userId: string, genomeId: string, includeExpired?: boolean): Promise<SemanticFact[]>;
+    getFact(factId: string): Promise<SemanticFact | null>;
+    updateFact(factId: string, updates: Partial<SemanticFact>): Promise<void>;
+    deleteFact(factId: string): Promise<void>;
+    deleteUserFacts(userId: string, genomeId: string): Promise<void>;
+    cleanExpiredFacts(userId: string, genomeId: string): Promise<number>;
+    saveToGeneRegistry(entry: GeneRegistryEntry): Promise<void>;
+    queryGeneRegistry(familyId: string, gene?: string, minFitness?: number): Promise<GeneRegistryEntry[]>;
+    getBestRegistryGene(familyId: string, gene: string): Promise<GeneRegistryEntry | null>;
+    saveCalibrationPoint(point: {
+        contextKey: string;
+        layer?: 0 | 1 | 2;
+        operator?: string;
+        taskType?: string;
+        threshold: number;
+        totalCandidates: number;
+        passedSandbox: number;
+        deployedSuccessfully: number;
+        rolledBack: number;
+        falsePositiveRate: number;
+        falseNegativeRate: number;
+        optimalThreshold: number;
+        timestamp: Date;
+    }): Promise<void>;
+    getCalibrationHistory(contextKey: string, limit?: number): Promise<Array<{
+        contextKey: string;
+        layer?: number;
+        operator?: string;
+        taskType?: string;
+        threshold: number;
+        totalCandidates: number;
+        passedSandbox: number;
+        deployedSuccessfully: number;
+        rolledBack: number;
+        falsePositiveRate: number;
+        falseNegativeRate: number;
+        optimalThreshold: number;
+        timestamp: Date;
+    }>>;
+}
+//# sourceMappingURL=InMemoryStorageAdapter.d.ts.map

package/dist/wrap/InMemoryStorageAdapter.d.ts.map

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package/dist/wrap/InMemoryStorageAdapter.js

@@ -0,0 +1,178 @@
+export class InMemoryStorageAdapter {
+    genomes = new Map();
+    dna = new Map();
+    mutations = [];
+    interactions = [];
+    feedbackRecords = [];
+    facts = new Map();
+    factIndex = new Map();
+    geneRegistry = [];
+    calibrationPoints = [];
+    maxEntries;
+    constructor(options) {
+        this.maxEntries = options?.maxEntries ?? 10_000;
+    }
+    async initialize() {
+    }
+    trimArray(arr) {
+        if (arr.length > this.maxEntries) {
+            arr.splice(0, arr.length - this.maxEntries);
+        }
+    }
+    async saveGenome(genome) {
+        this.genomes.set(genome.id, structuredClone(genome));
+    }
+    async loadGenome(genomeId) {
+        const genome = this.genomes.get(genomeId);
+        return genome ? structuredClone(genome) : null;
+    }
+    async deleteGenome(genomeId) {
+        this.genomes.delete(genomeId);
+    }
+    async listGenomes() {
+        return Array.from(this.genomes.values()).map(g => structuredClone(g));
+    }
+    async saveDNA(userId, genomeId, dna) {
+        this.dna.set(`${userId}:${genomeId}`, structuredClone(dna));
+    }
+    async loadDNA(userId, genomeId) {
+        const dna = this.dna.get(`${userId}:${genomeId}`);
+        return dna ? structuredClone(dna) : null;
+    }
+    async logMutation(mutation) {
+        this.mutations.push(structuredClone(mutation));
+        this.trimArray(this.mutations);
+    }
+    async getMutationHistory(genomeId, limit = 100) {
+        return this.mutations
+            .filter(m => m.genomeId === genomeId)
+            .slice(-limit);
+    }
+    async getGeneMutationHistory(genomeId, gene, limit = 50) {
+        return this.mutations
+            .filter(m => m.genomeId === genomeId && m.gene === gene)
+            .slice(-limit);
+    }
+    async recordInteraction(interaction) {
+        this.interactions.push({ ...interaction });
+        this.trimArray(this.interactions);
+    }
+    async getRecentInteractions(genomeId, userId, limit = 20) {
+        return this.interactions
+            .filter(i => i.genomeId === genomeId && i.userId === userId)
+            .slice(-limit);
+    }
+    async recordFeedback(feedback) {
+        this.feedbackRecords.push({ ...feedback });
+        this.trimArray(this.feedbackRecords);
+    }
+    async getAnalytics(genomeId) {
+        const genomeMutations = this.mutations.filter(m => m.genomeId === genomeId);
+        const genomeInteractions = this.interactions.filter(i => i.genomeId === genomeId);
+        return {
+            totalMutations: genomeMutations.length,
+            totalInteractions: genomeInteractions.length,
+            avgFitnessImprovement: genomeMutations.length > 0
+                ? genomeMutations.reduce((sum, m) => sum + (m.fitnessDelta ?? 0), 0) / genomeMutations.length
+                : 0,
+            userSatisfaction: 0.7,
+            topGenes: [],
+        };
+    }
+    async saveFact(fact, userId, genomeId) {
+        this.facts.set(fact.id, structuredClone(fact));
+        const key = `${userId}:${genomeId}`;
+        const ids = this.factIndex.get(key) ?? [];
+        if (!ids.includes(fact.id)) {
+            ids.push(fact.id);
+        }
+        this.factIndex.set(key, ids);
+    }
+    async getFacts(userId, genomeId, includeExpired = false) {
+        const key = `${userId}:${genomeId}`;
+        const ids = this.factIndex.get(key) ?? [];
+        const facts = [];
+        for (const id of ids) {
+            const fact = this.facts.get(id);
+            if (fact) {
+                if (includeExpired || !fact.expiry || fact.expiry > new Date()) {
+                    facts.push(structuredClone(fact));
+                }
+            }
+        }
+        return facts;
+    }
+    async getFact(factId) {
+        const fact = this.facts.get(factId);
+        return fact ? structuredClone(fact) : null;
+    }
+    async updateFact(factId, updates) {
+        const existing = this.facts.get(factId);
+        if (existing) {
+            this.facts.set(factId, { ...existing, ...updates });
+        }
+    }
+    async deleteFact(factId) {
+        this.facts.delete(factId);
+        for (const [key, ids] of this.factIndex.entries()) {
+            const filtered = ids.filter(id => id !== factId);
+            if (filtered.length !== ids.length) {
+                this.factIndex.set(key, filtered);
+            }
+        }
+    }
+    async deleteUserFacts(userId, genomeId) {
+        const key = `${userId}:${genomeId}`;
+        const ids = this.factIndex.get(key) ?? [];
+        for (const id of ids) {
+            this.facts.delete(id);
+        }
+        this.factIndex.delete(key);
+    }
+    async cleanExpiredFacts(userId, genomeId) {
+        const key = `${userId}:${genomeId}`;
+        const ids = this.factIndex.get(key) ?? [];
+        let cleaned = 0;
+        const now = new Date();
+        const remaining = [];
+        for (const id of ids) {
+            const fact = this.facts.get(id);
+            if (fact?.expiry && fact.expiry <= now) {
+                this.facts.delete(id);
+                cleaned++;
+            }
+            else {
+                remaining.push(id);
+            }
+        }
+        this.factIndex.set(key, remaining);
+        return cleaned;
+    }
+    async saveToGeneRegistry(entry) {
+        this.geneRegistry.push(structuredClone(entry));
+        this.trimArray(this.geneRegistry);
+    }
+    async queryGeneRegistry(familyId, gene, minFitness = 0) {
+        return this.geneRegistry.filter(e => e.familyId === familyId &&
+            (!gene || e.gene === gene) &&
+            e.fitness >= minFitness);
+    }
+    async getBestRegistryGene(familyId, gene) {
+        const entries = await this.queryGeneRegistry(familyId, gene);
+        if (entries.length === 0)
+            return null;
+        return entries.sort((a, b) => b.fitness - a.fitness)[0];
+    }
+    async saveCalibrationPoint(point) {
+        this.calibrationPoints.push(structuredClone(point));
+        this.trimArray(this.calibrationPoints);
+    }
+    async getCalibrationHistory(contextKey, limit = 50) {
+        return this.calibrationPoints
+            .filter(p => p.contextKey === contextKey)
+            .sort((a, b) => b.timestamp.getTime() - a.timestamp.getTime())
+            .slice(0, limit)
+            .map(p => structuredClone(p));
+    }
+}
+//# sourceMappingURL=InMemoryStorageAdapter.js.map

package/dist/wrap/InMemoryStorageAdapter.js.map

@@ -0,0 +1 @@
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package/dist/wrap/WrapOptions.d.ts

@@ -0,0 +1,47 @@
+import type { StorageAdapter } from '../interfaces/StorageAdapter.js';
+import type { GeneBank } from '../gene-bank/GeneBank.js';
+import type { GeneCategory } from '../types/GenomeV2.js';
+import type { GSEPVisibility } from '../types/index.js';
+import type { MetricsCollectorConfig } from '../monitoring/MetricsCollector.js';
+import type { DashboardConfig } from '../monitoring/MonitoringDashboard.js';
+export interface WrapOptions {
+    name?: string;
+    systemPrompt: string;
+    protect?: string[];
+    evolve?: Array<string | {
+        category: GeneCategory;
+        content: string;
+    }>;
+    adapt?: Array<string | {
+        trait: string;
+        content: string;
+    }>;
+    storage?: StorageAdapter;
+    geneBank?: GeneBank;
+    evolution?: {
+        mode?: 'conservative' | 'balanced' | 'aggressive';
+        canary?: boolean;
+        evolveEveryN?: number;
+        autoMutateOnDrift?: boolean;
+        autoCompressOnPressure?: boolean;
+        enableSwarm?: boolean;
+    };
+    monitoring?: {
+        enabled?: boolean;
+        dashboard?: boolean;
+        dashboardConfig?: DashboardConfig;
+        alerts?: boolean;
+        metricsConfig?: MetricsCollectorConfig;
+    };
+    familyId?: string;
+    enableSelfModel?: boolean;
+    enableMetacognition?: boolean;
+    enableEmotionalModel?: boolean;
+    agentPurpose?: string;
+    gsepVisibility?: GSEPVisibility;
+}
+export type WrappableFunction = (input: string) => Promise<string>;
+export interface FunctionWrapOptions extends WrapOptions {
+    name: string;
+}
+//# sourceMappingURL=WrapOptions.d.ts.map

package/dist/wrap/WrapOptions.d.ts.map

@@ -0,0 +1 @@
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package/dist/wrap/WrapOptions.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=WrapOptions.js.map

package/dist/wrap/WrapOptions.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"WrapOptions.js","sourceRoot":"","sources":["../../src/wrap/WrapOptions.ts"],"names":[],"mappings":""}