@gsep/core 0.8.0

package/dist/gene-bank/GeneExtractor.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"GeneExtractor.js","sourceRoot":"","sources":["../../src/gene-bank/GeneExtractor.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EAOH,YAAY,GACf,MAAM,iBAAiB,CAAC;AA8BzB,MAAM,CAAC,MAAM,0BAA0B,GAAG,CAAC,CAAC,MAAM,CAAC;IAE/C,mBAAmB,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC;IAG1D,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC;IAG9C,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC;IAGpD,WAAW,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC;IAGtC,eAAe,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;IAGtC,SAAS,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC;IAGlD,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC;CACrD,CAAC,CAAC;AAoDH,SAAS,qBAAqB,CAAC,OAAwB;IACnD,OAAO;;;;;EAKT,OAAO,CAAC,cAAc;;;EAGtB,OAAO,CAAC,aAAa;;;EAGrB,OAAO,CAAC,WAAW;;;EAGnB,OAAO,CAAC,MAAM;;;oBAGI,OAAO,CAAC,aAAa,CAAC,OAAO,CAAC,CAAC,CAAC;qBAC/B,OAAO,CAAC,cAAc,CAAC,OAAO,CAAC,CAAC,CAAC;UAC5C,CAAC,OAAO,CAAC,cAAc,GAAG,OAAO,CAAC,aAAa,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;iDAmCpB,CAAC;AAClD,CAAC;AASD,MAAM,wBAAwB,GAAG,CAAC,CAAC,MAAM,CAAC;IACtC,UAAU,EAAE,CAAC,CAAC,OAAO,EAAE;IACvB,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;IACpC,QAAQ,EAAE,CAAC,CAAC,IAAI,CAAC;QACb,oBAAoB;QACpB,mBAAmB;QACnB,uBAAuB;QACvB,wBAAwB;QACxB,oBAAoB;QACpB,qBAAqB;QACrB,kBAAkB;KACrB,CAAC;IACF,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE;IAChB,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE;IACvB,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE;IACvB,QAAQ,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC;QACvB,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE;QACpB,gBAAgB,EAAE,CAAC,CAAC,MAAM,EAAE;KAC/B,CAAC,CAAC;IACH,oBAAoB,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;IACzC,kBAAkB,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;IACvC,iBAAiB,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;IACtC,SAAS,EAAE,CAAC,CAAC,MAAM,EAAE;CACxB,CAAC,CAAC;AAWH,MAAM,OAAO,aAAa;IAIV;IAEA;IALJ,MAAM,CAAuB;IAErC,YACY,GAAe,EACvB,MAAsC,EAC9B,gBAAmC;QAFnC,QAAG,GAAH,GAAG,CAAY;QAEf,qBAAgB,GAAhB,gBAAgB,CAAmB;QAE3C,IAAI,CAAC,MAAM,GAAG,0BAA0B,CAAC,KAAK,CAAC,MAAM,IAAI,EAAE,CAAC,CAAC;IACjE,CAAC;IASD,KAAK,CAAC,WAAW,CACb,OAAwB,EACxB,UAAsB;QAEtB,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;QAE7B,IAAI,CAAC;YAED,MAAM,WAAW,GAAG,OAAO,CAAC,cAAc,GAAG,OAAO,CAAC,aAAa,CAAC;YAEnE,IAAI,OAAO,CAAC,cAAc,GAAG,IAAI,CAAC,MAAM,CAAC,mBAAmB,EAAE,CAAC;gBAC3D,OAAO;oBACH,OAAO,EAAE,KAAK;oBACd,IAAI,EAAE,IAAI;oBACV,MAAM,EAAE,WAAW,OAAO,CAAC,cAAc,oBAAoB,IAAI,CAAC,MAAM,CAAC,mBAAmB,EAAE;oBAC9F,UAAU,EAAE,CAAC;oBACb,QAAQ,EAAE;wBACN,gBAAgB,EAAE,OAAO,CAAC,UAAU;wBACpC,gBAAgB,EAAE,iBAAiB;wBACnC,UAAU,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,SAAS;wBAClC,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;qBACtC;iBACJ,CAAC;YACN,CAAC;YAED,IAAI,WAAW,GAAG,IAAI,CAAC,MAAM,CAAC,cAAc,EAAE,CAAC;gBAC3C,OAAO;oBACH,OAAO,EAAE,KAAK;oBACd,IAAI,EAAE,IAAI;oBACV,MAAM,EAAE,gBAAgB,WAAW,oBAAoB,IAAI,CAAC,MAAM,CAAC,cAAc,EAAE;oBACnF,UAAU,EAAE,CAAC;oBACb,QAAQ,EAAE;wBACN,gBAAgB,EAAE,OAAO,CAAC,UAAU;wBACpC,gBAAgB,EAAE,iBAAiB;wBACnC,UAAU,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,SAAS;wBAClC,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;qBACtC;iBACJ,CAAC;YACN,CAAC;YAGD,MAAM,MAAM,GAAG,qBAAqB,CAAC,OAAO,CAAC,CAAC;YAG9C,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,CAAC,EAAE;gBACtE,SAAS,EAAE,IAAI,CAAC,MAAM,CAAC,SAAS;gBAChC,WAAW,EAAE,IAAI,CAAC,MAAM,CAAC,WAAW;aACvC,CAAC,CAAC;YAGH,MAAM,cAAc,GAAG,IAAI,CAAC,uBAAuB,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC;YAGtE,IAAI,CAAC,cAAc,CAAC,UAAU,EAAE,CAAC;gBAC7B,OAAO;oBACH,OAAO,EAAE,KAAK;oBACd,IAAI,EAAE,IAAI;oBACV,MAAM,EAAE,cAAc,CAAC,SAAS,IAAI,yCAAyC;oBAC7E,UAAU,EAAE,cAAc,CAAC,UAAU;oBACrC,QAAQ,EAAE;wBACN,gBAAgB,EAAE,OAAO,CAAC,UAAU;wBACpC,gBAAgB,EAAE,cAAc;wBAChC,UAAU,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,SAAS;wBAClC,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;qBACtC;iBACJ,CAAC;YACN,CAAC;YAED,IAAI,cAAc,CAAC,UAAU,GAAG,IAAI,CAAC,MAAM,CAAC,aAAa,EAAE,CAAC;gBACxD,OAAO;oBACH,OAAO,EAAE,KAAK;oBACd,IAAI,EAAE,IAAI;oBACV,MAAM,EAAE,cAAc,cAAc,CAAC,UAAU,oBAAoB,IAAI,CAAC,MAAM,CAAC,aAAa,EAAE;oBAC9F,UAAU,EAAE,cAAc,CAAC,UAAU;oBACrC,QAAQ,EAAE;wBACN,gBAAgB,EAAE,OAAO,CAAC,UAAU;wBACpC,gBAAgB,EAAE,cAAc;wBAChC,UAAU,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,SAAS;wBAClC,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;qBACtC;iBACJ,CAAC;YACN,CAAC;YAGD,MAAM,IAAI,GAAG,IAAI,CAAC,SAAS,CAAC,cAAc,EAAE,OAAO,EAAE,UAAU,CAAC,CAAC;YAGjE,IAAI,CAAC,gBAAgB,EAAE,QAAQ,CAAC;gBAC5B,KAAK,EAAE,MAAM;gBACb,SAAS,EAAE,eAAe;gBAC1B,SAAS,EAAE,aAAa;gBACxB,OAAO,EAAE,+BAA+B,IAAI,CAAC,IAAI,KAAK,IAAI,CAAC,IAAI,qBAAqB,cAAc,CAAC,UAAU,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE;gBAC1H,QAAQ,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,SAAS;gBAChC,QAAQ,EAAE;oBACN,MAAM,EAAE,IAAI,CAAC,EAAE;oBACf,QAAQ,EAAE,IAAI,CAAC,IAAI;oBACnB,MAAM,EAAE,IAAI,CAAC,MAAM;oBACnB,gBAAgB,EAAE,OAAO,CAAC,UAAU;oBACpC,UAAU,EAAE,cAAc,CAAC,UAAU;oBACrC,WAAW;iBACd;aACJ,CAAC,CAAC;YAEH,OAAO;gBACH,OAAO,EAAE,IAAI;gBACb,IAAI;gBACJ,UAAU,EAAE,cAAc,CAAC,UAAU;gBACrC,QAAQ,EAAE;oBACN,gBAAgB,EAAE,OAAO,CAAC,UAAU;oBACpC,gBAAgB,EAAE,cAAc;oBAChC,UAAU,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,SAAS;oBAClC,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;iBACtC;aACJ,CAAC;QACN,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YAEb,IAAI,CAAC,gBAAgB,EAAE,QAAQ,CAAC;gBAC5B,KAAK,EAAE,OAAO;gBACd,SAAS,EAAE,eAAe;gBAC1B,SAAS,EAAE,aAAa;gBACxB,OAAO,EAAE,2BAA2B,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,eAAe,EAAE;gBAC9F,QAAQ,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,SAAS;gBAChC,QAAQ,EAAE;oBACN,gBAAgB,EAAE,OAAO,CAAC,UAAU;oBACpC,KAAK,EAAE,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,eAAe;iBAClE;aACJ,CAAC,CAAC;YAEH,OAAO;gBACH,OAAO,EAAE,KAAK;gBACd,IAAI,EAAE,IAAI;gBACV,MAAM,EAAE,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,iCAAiC;gBAClF,UAAU,EAAE,CAAC;gBACb,QAAQ,EAAE;oBACN,gBAAgB,EAAE,OAAO,CAAC,UAAU;oBACpC,gBAAgB,EAAE,OAAO;oBACzB,UAAU,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,SAAS;oBAClC,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;iBACtC;aACJ,CAAC;QACN,CAAC;IACL,CAAC;IAKD,KAAK,CAAC,YAAY,CACd,QAA2B,EAC3B,UAAsB;QAEtB,MAAM,OAAO,GAA2B,EAAE,CAAC;QAE3C,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE,CAAC;YAC7B,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,OAAO,EAAE,UAAU,CAAC,CAAC;YAC3D,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;QACzB,CAAC;QAED,OAAO,OAAO,CAAC;IACnB,CAAC;IASO,uBAAuB,CAAC,YAAoB;QAChD,IAAI,CAAC;YAED,MAAM,SAAS,GAAG,YAAY,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC;YACpD,IAAI,CAAC,SAAS,EAAE,CAAC;gBACb,MAAM,IAAI,KAAK,CAAC,2BAA2B,CAAC,CAAC;YACjD,CAAC;YAED,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC;YACtC,OAAO,wBAAwB,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;QAChD,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACb,MAAM,IAAI,KAAK,CACX,wCAAwC,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,eAAe,EAAE,CACrG,CAAC;QACN,CAAC;IACL,CAAC;IAKO,SAAS,CACb,cAAkC,EAClC,OAAwB,EACxB,UAAsB;QAEtB,MAAM,GAAG,GAAG,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC;QACrC,MAAM,MAAM,GAAG,YAAY,CAAC,UAAU,CAAC,QAAQ,EAAE,cAAc,CAAC,QAAQ,CAAC,CAAC;QAG1E,MAAM,OAAO,GAAmB;YAC5B,cAAc,EAAE,OAAO,CAAC,cAAc;YACtC,eAAe,EAAE,OAAO,CAAC,OAAO,EAAE,eAAe,IAAI,OAAO,CAAC,cAAc;YAC3E,gBAAgB,EAAE,OAAO,CAAC,OAAO,EAAE,gBAAgB;YACnD,eAAe,EAAE,OAAO,CAAC,OAAO,EAAE,eAAe,IAAI,CAAC;YACtD,eAAe,EAAE,OAAO,CAAC,OAAO,EAAE,eAAe,IAAI,OAAO,CAAC,cAAc;YAC3E,aAAa,EAAE,CAAC;YAChB,mBAAmB,EAAE,IAAI;SAC5B,CAAC;QAGF,MAAM,OAAO,GAAY;YACrB,YAAY,EAAE,OAAO,CAAC,YAAY,IAAI,IAAI;YAC1C,UAAU,EAAE,OAAO,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;YACxC,SAAS,EAAE,OAAO,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,EAAE;YAC7D,eAAe,EAAE;gBACb;oBACI,SAAS,EAAE,GAAG;oBACd,MAAM,EAAE,2BAA2B,OAAO,CAAC,UAAU,EAAE;oBACvD,WAAW,EAAE,OAAO,CAAC,cAAc,GAAG,OAAO,CAAC,aAAa;iBAC9D;aACJ;SACJ,CAAC;QAGF,MAAM,OAAO,GAAgB;YACzB,WAAW,EAAE,cAAc,CAAC,WAAW;YACvC,QAAQ,EAAE,cAAc,CAAC,QAAQ;YACjC,oBAAoB,EAAE,cAAc,CAAC,oBAAoB;YACzD,kBAAkB,EAAE,cAAc,CAAC,kBAAkB;YACrD,iBAAiB,EAAE,cAAc,CAAC,iBAAiB;YACnD,QAAQ,EAAE;gBACN,mBAAmB,EAAE,cAAc,CAAC,SAAS;gBAC7C,gBAAgB,EAAE,OAAO,CAAC,UAAU;gBACpC,cAAc,EAAE,OAAO,CAAC,cAAc;gBACtC,aAAa,EAAE,OAAO,CAAC,aAAa;aACvC;SACJ,CAAC;QAGF,MAAM,IAAI,GAAkB;YACxB,EAAE,EAAE,MAAM;YACV,OAAO,EAAE,OAAO;YAChB,IAAI,EAAE,cAAc,CAAC,IAAI;YACzB,WAAW,EAAE,cAAc,CAAC,WAAW;YACvC,IAAI,EAAE,cAAc,CAAC,QAAQ;YAC7B,MAAM,EAAE,OAAO,CAAC,MAAM;YACtB,OAAO;YACP,OAAO;YACP,OAAO;YACP,MAAM,EAAE,UAAU;YAClB,SAAS,EAAE,GAAG;YACd,SAAS,EAAE,GAAG;YACd,IAAI,EAAE;gBACF,OAAO,CAAC,MAAM;gBACd,cAAc,CAAC,QAAQ;gBACvB,WAAW;aACd;SACJ,CAAC;QAEF,OAAO,IAAI,CAAC;IAChB,CAAC;IASD,SAAS;QACL,OAAO,EAAE,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC;IAC9B,CAAC;IAKD,YAAY,CAAC,OAAsC;QAC/C,IAAI,CAAC,MAAM,GAAG,0BAA0B,CAAC,KAAK,CAAC;YAC3C,GAAG,IAAI,CAAC,MAAM;YACd,GAAG,OAAO;SACb,CAAC,CAAC;IACP,CAAC;CACJ"}

package/dist/gene-bank/GeneMatcher.d.ts

@@ -0,0 +1,83 @@
+import { z } from 'zod';
+import { CognitiveGene, GeneType } from './CognitiveGene';
+export declare const GeneMatchConfigSchema: z.ZodObject<{
+    minFitness: z.ZodDefault<z.ZodNumber>;
+    minMatchScore: z.ZodDefault<z.ZodNumber>;
+    fitnessWeight: z.ZodDefault<z.ZodNumber>;
+    domainWeight: z.ZodDefault<z.ZodNumber>;
+    typeWeight: z.ZodDefault<z.ZodNumber>;
+    adoptionWeight: z.ZodDefault<z.ZodNumber>;
+    maxResults: z.ZodDefault<z.ZodNumber>;
+    domainBoost: z.ZodDefault<z.ZodNumber>;
+    adoptionBoost: z.ZodDefault<z.ZodNumber>;
+}, "strip", z.ZodTypeAny, {
+    minFitness: number;
+    minMatchScore: number;
+    fitnessWeight: number;
+    domainWeight: number;
+    typeWeight: number;
+    adoptionWeight: number;
+    maxResults: number;
+    domainBoost: number;
+    adoptionBoost: number;
+}, {
+    minFitness?: number | undefined;
+    minMatchScore?: number | undefined;
+    fitnessWeight?: number | undefined;
+    domainWeight?: number | undefined;
+    typeWeight?: number | undefined;
+    adoptionWeight?: number | undefined;
+    maxResults?: number | undefined;
+    domainBoost?: number | undefined;
+    adoptionBoost?: number | undefined;
+}>;
+export type GeneMatchConfig = z.infer<typeof GeneMatchConfigSchema>;
+export interface MatchContext {
+    task: string;
+    domain: string;
+    preferredTypes?: GeneType[];
+    requiredCapabilities?: string[];
+    tags?: string[];
+    currentContext?: string;
+}
+export interface GeneMatchResult {
+    gene: CognitiveGene;
+    matchScore: number;
+    scoreBreakdown: {
+        fitnessScore: number;
+        domainScore: number;
+        typeScore: number;
+        adoptionScore: number;
+        semanticScore?: number;
+    };
+    reason: string;
+    confidence: number;
+}
+export declare class GeneMatcher {
+    private config;
+    constructor(config?: Partial<GeneMatchConfig>);
+    findMatches(context: MatchContext, candidates: CognitiveGene[]): Promise<GeneMatchResult[]>;
+    findBestMatch(context: MatchContext, candidates: CognitiveGene[]): Promise<GeneMatchResult | null>;
+    findByDomain(domain: string, candidates: CognitiveGene[]): Promise<GeneMatchResult[]>;
+    findByType(type: GeneType, candidates: CognitiveGene[]): Promise<GeneMatchResult[]>;
+    private scoreGene;
+    private scoreDomain;
+    private scoreType;
+    private scoreAdoption;
+    private static readonly STOPWORDS;
+    private scoreSemanticMatch;
+    private buildMatchReason;
+    private calculateConfidence;
+    checkCompatibility(gene: CognitiveGene, agentCapabilities: string[]): {
+        compatible: boolean;
+        missingCapabilities: string[];
+        reason: string;
+    };
+    checkApplicability(gene: CognitiveGene, currentContext: string): {
+        applicable: boolean;
+        reason: string;
+    };
+    getConfig(): GeneMatchConfig;
+    updateConfig(updates: Partial<GeneMatchConfig>): void;
+}
+//# sourceMappingURL=GeneMatcher.d.ts.map

package/dist/gene-bank/GeneMatcher.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"GeneMatcher.d.ts","sourceRoot":"","sources":["../../src/gene-bank/GeneMatcher.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EACH,aAAa,EACb,QAAQ,EACX,MAAM,iBAAiB,CAAC;AA2BzB,eAAO,MAAM,qBAAqB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA2BhC,CAAC;AAEH,MAAM,MAAM,eAAe,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,qBAAqB,CAAC,CAAC;AASpE,MAAM,WAAW,YAAY;IAEzB,IAAI,EAAE,MAAM,CAAC;IAGb,MAAM,EAAE,MAAM,CAAC;IAGf,cAAc,CAAC,EAAE,QAAQ,EAAE,CAAC;IAG5B,oBAAoB,CAAC,EAAE,MAAM,EAAE,CAAC;IAGhC,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;IAGhB,cAAc,CAAC,EAAE,MAAM,CAAC;CAC3B;AASD,MAAM,WAAW,eAAe;IAE5B,IAAI,EAAE,aAAa,CAAC;IAGpB,UAAU,EAAE,MAAM,CAAC;IAGnB,cAAc,EAAE;QACZ,YAAY,EAAE,MAAM,CAAC;QACrB,WAAW,EAAE,MAAM,CAAC;QACpB,SAAS,EAAE,MAAM,CAAC;QAClB,aAAa,EAAE,MAAM,CAAC;QACtB,aAAa,CAAC,EAAE,MAAM,CAAC;KAC1B,CAAC;IAGF,MAAM,EAAE,MAAM,CAAC;IAGf,UAAU,EAAE,MAAM,CAAC;CACtB;AASD,qBAAa,WAAW;IACpB,OAAO,CAAC,MAAM,CAAkB;gBAEpB,MAAM,CAAC,EAAE,OAAO,CAAC,eAAe,CAAC;IAWvC,WAAW,CACb,OAAO,EAAE,YAAY,EACrB,UAAU,EAAE,aAAa,EAAE,GAC5B,OAAO,CAAC,eAAe,EAAE,CAAC;IA4BvB,aAAa,CACf,OAAO,EAAE,YAAY,EACrB,UAAU,EAAE,aAAa,EAAE,GAC5B,OAAO,CAAC,eAAe,GAAG,IAAI,CAAC;IAQ5B,YAAY,CACd,MAAM,EAAE,MAAM,EACd,UAAU,EAAE,aAAa,EAAE,GAC5B,OAAO,CAAC,eAAe,EAAE,CAAC;IAUvB,UAAU,CACZ,IAAI,EAAE,QAAQ,EACd,UAAU,EAAE,aAAa,EAAE,GAC5B,OAAO,CAAC,eAAe,EAAE,CAAC;IAc7B,OAAO,CAAC,SAAS;IAwEjB,OAAO,CAAC,WAAW;IAyBnB,OAAO,CAAC,SAAS;IAejB,OAAO,CAAC,aAAa;IAarB,OAAO,CAAC,MAAM,CAAC,QAAQ,CAAC,SAAS,CAM9B;IAQH,OAAO,CAAC,kBAAkB;IAmC1B,OAAO,CAAC,gBAAgB;IA2CxB,OAAO,CAAC,mBAAmB;IAgC3B,kBAAkB,CACd,IAAI,EAAE,aAAa,EACnB,iBAAiB,EAAE,MAAM,EAAE,GAC5B;QACC,UAAU,EAAE,OAAO,CAAC;QACpB,mBAAmB,EAAE,MAAM,EAAE,CAAC;QAC9B,MAAM,EAAE,MAAM,CAAC;KAClB;IAsBD,kBAAkB,CACd,IAAI,EAAE,aAAa,EACnB,cAAc,EAAE,MAAM,GACvB;QACC,UAAU,EAAE,OAAO,CAAC;QACpB,MAAM,EAAE,MAAM,CAAC;KAClB;IA4CD,SAAS,IAAI,eAAe;IAO5B,YAAY,CAAC,OAAO,EAAE,OAAO,CAAC,eAAe,CAAC,GAAG,IAAI;CAMxD"}

package/dist/gene-bank/GeneMatcher.js

@@ -0,0 +1,233 @@
+import { z } from 'zod';
+export const GeneMatchConfigSchema = z.object({
+    minFitness: z.number().min(0).max(1).default(0.7),
+    minMatchScore: z.number().min(0).max(1).default(0.5),
+    fitnessWeight: z.number().min(0).max(1).default(0.4),
+    domainWeight: z.number().min(0).max(1).default(0.3),
+    typeWeight: z.number().min(0).max(1).default(0.2),
+    adoptionWeight: z.number().min(0).max(1).default(0.1),
+    maxResults: z.number().int().min(1).default(10),
+    domainBoost: z.number().min(1).default(1.5),
+    adoptionBoost: z.number().min(1).default(1.2),
+});
+export class GeneMatcher {
+    config;
+    constructor(config) {
+        this.config = GeneMatchConfigSchema.parse(config || {});
+    }
+    async findMatches(context, candidates) {
+        const fitGenes = candidates.filter(gene => gene.fitness.overallFitness >= this.config.minFitness);
+        const scoredGenes = [];
+        for (const gene of fitGenes) {
+            const matchResult = this.scoreGene(gene, context);
+            if (matchResult.matchScore >= this.config.minMatchScore) {
+                scoredGenes.push(matchResult);
+            }
+        }
+        scoredGenes.sort((a, b) => b.matchScore - a.matchScore);
+        return scoredGenes.slice(0, this.config.maxResults);
+    }
+    async findBestMatch(context, candidates) {
+        const matches = await this.findMatches(context, candidates);
+        return matches.length > 0 ? matches[0] : null;
+    }
+    async findByDomain(domain, candidates) {
+        return this.findMatches({ task: '', domain }, candidates);
+    }
+    async findByType(type, candidates) {
+        return this.findMatches({ task: '', domain: '', preferredTypes: [type] }, candidates);
+    }
+    scoreGene(gene, context) {
+        const fitnessScore = gene.fitness.overallFitness;
+        const domainScore = this.scoreDomain(gene, context);
+        const typeScore = this.scoreType(gene, context);
+        const adoptionScore = this.scoreAdoption(gene);
+        const semanticScore = context.currentContext
+            ? this.scoreSemanticMatch(gene, context)
+            : 0;
+        let weightedScore = fitnessScore * this.config.fitnessWeight +
+            domainScore * this.config.domainWeight +
+            typeScore * this.config.typeWeight +
+            adoptionScore * this.config.adoptionWeight;
+        if (domainScore > 0.8) {
+            weightedScore *= this.config.domainBoost;
+        }
+        if (gene.fitness.adoptionCount > 10) {
+            weightedScore *= this.config.adoptionBoost;
+        }
+        const matchScore = Math.min(1, weightedScore);
+        const reason = this.buildMatchReason(gene, context, {
+            fitnessScore,
+            domainScore,
+            typeScore,
+            adoptionScore,
+            semanticScore,
+        });
+        const confidence = this.calculateConfidence({
+            fitnessScore,
+            domainScore,
+            typeScore,
+            adoptionScore,
+            semanticScore,
+        });
+        return {
+            gene,
+            matchScore,
+            scoreBreakdown: {
+                fitnessScore,
+                domainScore,
+                typeScore,
+                adoptionScore,
+                semanticScore,
+            },
+            reason,
+            confidence,
+        };
+    }
+    scoreDomain(gene, context) {
+        if (gene.domain.toLowerCase() === context.domain.toLowerCase()) {
+            return 1.0;
+        }
+        if (gene.domain.toLowerCase().includes(context.domain.toLowerCase()) ||
+            context.domain.toLowerCase().includes(gene.domain.toLowerCase())) {
+            return 0.7;
+        }
+        if (context.tags && gene.tags.some(tag => context.tags.includes(tag))) {
+            return 0.5;
+        }
+        return 0.1;
+    }
+    scoreType(gene, context) {
+        if (!context.preferredTypes || context.preferredTypes.length === 0) {
+            return 0.5;
+        }
+        if (context.preferredTypes.includes(gene.type)) {
+            return 1.0;
+        }
+        return 0.0;
+    }
+    scoreAdoption(gene) {
+        const count = gene.fitness.adoptionCount;
+        const performance = gene.fitness.adoptionPerformance ?? 0.5;
+        const countScore = Math.min(1, count / 20);
+        const performanceScore = performance;
+        return (countScore + performanceScore) / 2;
+    }
+    static STOPWORDS = new Set([
+        'the', 'this', 'that', 'with', 'from', 'have', 'been', 'were', 'will',
+        'would', 'could', 'should', 'about', 'which', 'their', 'there', 'then',
+        'than', 'them', 'they', 'what', 'when', 'where', 'your', 'into', 'also',
+        'more', 'some', 'very', 'just', 'like', 'each', 'make', 'does', 'over',
+        'such', 'only', 'most', 'other', 'after', 'before', 'being', 'under',
+    ]);
+    scoreSemanticMatch(gene, context) {
+        if (!context.currentContext)
+            return 0;
+        const contextLower = context.currentContext.toLowerCase();
+        const geneText = (gene.content.instruction + ' ' + gene.description).toLowerCase();
+        const terms = contextLower
+            .split(/\s+/)
+            .filter(t => t.length > 3 && !GeneMatcher.STOPWORDS.has(t));
+        if (terms.length === 0)
+            return 0;
+        let totalWeight = 0;
+        let matchedWeight = 0;
+        for (const term of terms) {
+            const weight = Math.min(3, term.length / 4);
+            totalWeight += weight;
+            if (geneText.includes(term)) {
+                matchedWeight += weight;
+            }
+        }
+        return totalWeight > 0 ? Math.min(1, matchedWeight / totalWeight) : 0;
+    }
+    buildMatchReason(gene, _context, scores) {
+        const reasons = [];
+        if (scores.fitnessScore >= 0.8) {
+            reasons.push(`high fitness (${(scores.fitnessScore * 100).toFixed(0)}%)`);
+        }
+        if (scores.domainScore >= 0.9) {
+            reasons.push(`exact domain match (${gene.domain})`);
+        }
+        else if (scores.domainScore >= 0.6) {
+            reasons.push(`similar domain (${gene.domain})`);
+        }
+        if (scores.typeScore >= 0.9) {
+            reasons.push(`preferred type (${gene.type})`);
+        }
+        if (gene.fitness.adoptionCount > 5) {
+            reasons.push(`proven adoption (${gene.fitness.adoptionCount} times)`);
+        }
+        if (scores.semanticScore && scores.semanticScore >= 0.6) {
+            reasons.push('semantic match with context');
+        }
+        return reasons.length > 0
+            ? `Match: ${reasons.join(', ')}`
+            : 'General match based on fitness';
+    }
+    calculateConfidence(scores) {
+        const weights = {
+            fitness: 0.3,
+            domain: 0.3,
+            type: 0.2,
+            adoption: 0.1,
+            semantic: 0.1,
+        };
+        const confidence = scores.fitnessScore * weights.fitness +
+            scores.domainScore * weights.domain +
+            scores.typeScore * weights.type +
+            scores.adoptionScore * weights.adoption +
+            (scores.semanticScore ?? 0) * weights.semantic;
+        return Math.min(1, confidence);
+    }
+    checkCompatibility(gene, agentCapabilities) {
+        const required = gene.content.requiredCapabilities || [];
+        const missing = required.filter(cap => !agentCapabilities.includes(cap));
+        if (missing.length === 0) {
+            return {
+                compatible: true,
+                missingCapabilities: [],
+                reason: 'All required capabilities available',
+            };
+        }
+        return {
+            compatible: false,
+            missingCapabilities: missing,
+            reason: `Missing capabilities: ${missing.join(', ')}`,
+        };
+    }
+    checkApplicability(gene, currentContext) {
+        const applicable = gene.content.applicableContexts || [];
+        const contraindications = gene.content.contraindications || [];
+        const hasContraindication = contraindications.some(contra => currentContext.toLowerCase().includes(contra.toLowerCase()));
+        if (hasContraindication) {
+            return {
+                applicable: false,
+                reason: 'Context matches contraindication',
+            };
+        }
+        if (applicable.length === 0) {
+            return {
+                applicable: true,
+                reason: 'Generally applicable',
+            };
+        }
+        const isApplicable = applicable.some(ctx => currentContext.toLowerCase().includes(ctx.toLowerCase()));
+        return {
+            applicable: isApplicable,
+            reason: isApplicable
+                ? 'Context matches applicable contexts'
+                : 'Context does not match applicable contexts',
+        };
+    }
+    getConfig() {
+        return { ...this.config };
+    }
+    updateConfig(updates) {
+        this.config = GeneMatchConfigSchema.parse({
+            ...this.config,
+            ...updates,
+        });
+    }
+}
+//# sourceMappingURL=GeneMatcher.js.map

package/dist/gene-bank/GeneMatcher.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"GeneMatcher.js","sourceRoot":"","sources":["../../src/gene-bank/GeneMatcher.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AA+BxB,MAAM,CAAC,MAAM,qBAAqB,GAAG,CAAC,CAAC,MAAM,CAAC;IAE1C,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC;IAGjD,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC;IAGpD,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC;IAGpD,YAAY,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC;IAGnD,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC;IAGjD,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC;IAGrD,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,EAAE,CAAC;IAG/C,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC;IAG3C,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC;CAChD,CAAC,CAAC;AAoEH,MAAM,OAAO,WAAW;IACZ,MAAM,CAAkB;IAEhC,YAAY,MAAiC;QACzC,IAAI,CAAC,MAAM,GAAG,qBAAqB,CAAC,KAAK,CAAC,MAAM,IAAI,EAAE,CAAC,CAAC;IAC5D,CAAC;IASD,KAAK,CAAC,WAAW,CACb,OAAqB,EACrB,UAA2B;QAG3B,MAAM,QAAQ,GAAG,UAAU,CAAC,MAAM,CAC9B,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,OAAO,CAAC,cAAc,IAAI,IAAI,CAAC,MAAM,CAAC,UAAU,CAChE,CAAC;QAGF,MAAM,WAAW,GAAsB,EAAE,CAAC;QAE1C,KAAK,MAAM,IAAI,IAAI,QAAQ,EAAE,CAAC;YAC1B,MAAM,WAAW,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;YAGlD,IAAI,WAAW,CAAC,UAAU,IAAI,IAAI,CAAC,MAAM,CAAC,aAAa,EAAE,CAAC;gBACtD,WAAW,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC;YAClC,CAAC;QACL,CAAC;QAGD,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,UAAU,GAAG,CAAC,CAAC,UAAU,CAAC,CAAC;QAGxD,OAAO,WAAW,CAAC,KAAK,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;IACxD,CAAC;IAKD,KAAK,CAAC,aAAa,CACf,OAAqB,EACrB,UAA2B;QAE3B,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,OAAO,EAAE,UAAU,CAAC,CAAC;QAC5D,OAAO,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IAClD,CAAC;IAKD,KAAK,CAAC,YAAY,CACd,MAAc,EACd,UAA2B;QAE3B,OAAO,IAAI,CAAC,WAAW,CACnB,EAAE,IAAI,EAAE,EAAE,EAAE,MAAM,EAAE,EACpB,UAAU,CACb,CAAC;IACN,CAAC;IAKD,KAAK,CAAC,UAAU,CACZ,IAAc,EACd,UAA2B;QAE3B,OAAO,IAAI,CAAC,WAAW,CACnB,EAAE,IAAI,EAAE,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE,cAAc,EAAE,CAAC,IAAI,CAAC,EAAE,EAChD,UAAU,CACb,CAAC;IACN,CAAC;IASO,SAAS,CAAC,IAAmB,EAAE,OAAqB;QAExD,MAAM,YAAY,GAAG,IAAI,CAAC,OAAO,CAAC,cAAc,CAAC;QAGjD,MAAM,WAAW,GAAG,IAAI,CAAC,WAAW,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;QAGpD,MAAM,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;QAGhD,MAAM,aAAa,GAAG,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,CAAC;QAG/C,MAAM,aAAa,GAAG,OAAO,CAAC,cAAc;YACxC,CAAC,CAAC,IAAI,CAAC,kBAAkB,CAAC,IAAI,EAAE,OAAO,CAAC;YACxC,CAAC,CAAC,CAAC,CAAC;QAGR,IAAI,aAAa,GACb,YAAY,GAAG,IAAI,CAAC,MAAM,CAAC,aAAa;YACxC,WAAW,GAAG,IAAI,CAAC,MAAM,CAAC,YAAY;YACtC,SAAS,GAAG,IAAI,CAAC,MAAM,CAAC,UAAU;YAClC,aAAa,GAAG,IAAI,CAAC,MAAM,CAAC,cAAc,CAAC;QAG/C,IAAI,WAAW,GAAG,GAAG,EAAE,CAAC;YACpB,aAAa,IAAI,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC;QAC7C,CAAC;QACD,IAAI,IAAI,CAAC,OAAO,CAAC,aAAa,GAAG,EAAE,EAAE,CAAC;YAClC,aAAa,IAAI,IAAI,CAAC,MAAM,CAAC,aAAa,CAAC;QAC/C,CAAC;QAGD,MAAM,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,aAAa,CAAC,CAAC;QAG9C,MAAM,MAAM,GAAG,IAAI,CAAC,gBAAgB,CAAC,IAAI,EAAE,OAAO,EAAE;YAChD,YAAY;YACZ,WAAW;YACX,SAAS;YACT,aAAa;YACb,aAAa;SAChB,CAAC,CAAC;QAGH,MAAM,UAAU,GAAG,IAAI,CAAC,mBAAmB,CAAC;YACxC,YAAY;YACZ,WAAW;YACX,SAAS;YACT,aAAa;YACb,aAAa;SAChB,CAAC,CAAC;QAEH,OAAO;YACH,IAAI;YACJ,UAAU;YACV,cAAc,EAAE;gBACZ,YAAY;gBACZ,WAAW;gBACX,SAAS;gBACT,aAAa;gBACb,aAAa;aAChB;YACD,MAAM;YACN,UAAU;SACb,CAAC;IACN,CAAC;IAKO,WAAW,CAAC,IAAmB,EAAE,OAAqB;QAE1D,IAAI,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE,KAAK,OAAO,CAAC,MAAM,CAAC,WAAW,EAAE,EAAE,CAAC;YAC7D,OAAO,GAAG,CAAC;QACf,CAAC;QAGD,IACI,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC;YAChE,OAAO,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,EAClE,CAAC;YACC,OAAO,GAAG,CAAC;QACf,CAAC;QAGD,IAAI,OAAO,CAAC,IAAI,IAAI,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,OAAO,CAAC,IAAK,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC;YACrE,OAAO,GAAG,CAAC;QACf,CAAC;QAED,OAAO,GAAG,CAAC;IACf,CAAC;IAKO,SAAS,CAAC,IAAmB,EAAE,OAAqB;QACxD,IAAI,CAAC,OAAO,CAAC,cAAc,IAAI,OAAO,CAAC,cAAc,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACjE,OAAO,GAAG,CAAC;QACf,CAAC;QAED,IAAI,OAAO,CAAC,cAAc,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC;YAC7C,OAAO,GAAG,CAAC;QACf,CAAC;QAED,OAAO,GAAG,CAAC;IACf,CAAC;IAKO,aAAa,CAAC,IAAmB;QACrC,MAAM,KAAK,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC;QACzC,MAAM,WAAW,GAAG,IAAI,CAAC,OAAO,CAAC,mBAAmB,IAAI,GAAG,CAAC;QAI5D,MAAM,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,GAAG,EAAE,CAAC,CAAC;QAC3C,MAAM,gBAAgB,GAAG,WAAW,CAAC;QAErC,OAAO,CAAC,UAAU,GAAG,gBAAgB,CAAC,GAAG,CAAC,CAAC;IAC/C,CAAC;IAGO,MAAM,CAAU,SAAS,GAAG,IAAI,GAAG,CAAC;QACxC,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM;QACrE,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM;QACtE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM;QACvE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM;QACtE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE,OAAO;KACvE,CAAC,CAAC;IAQK,kBAAkB,CAAC,IAAmB,EAAE,OAAqB;QACjE,IAAI,CAAC,OAAO,CAAC,cAAc;YAAE,OAAO,CAAC,CAAC;QAEtC,MAAM,YAAY,GAAG,OAAO,CAAC,cAAc,CAAC,WAAW,EAAE,CAAC;QAC1D,MAAM,QAAQ,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,WAAW,GAAG,GAAG,GAAG,IAAI,CAAC,WAAW,CAAC,CAAC,WAAW,EAAE,CAAC;QAGnF,MAAM,KAAK,GAAG,YAAY;aACrB,KAAK,CAAC,KAAK,CAAC;aACZ,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC,IAAI,CAAC,WAAW,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAEhE,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO,CAAC,CAAC;QAGjC,IAAI,WAAW,GAAG,CAAC,CAAC;QACpB,IAAI,aAAa,GAAG,CAAC,CAAC;QAEtB,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;YACvB,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;YAC5C,WAAW,IAAI,MAAM,CAAC;YACtB,IAAI,QAAQ,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC;gBAC1B,aAAa,IAAI,MAAM,CAAC;YAC5B,CAAC;QACL,CAAC;QAED,OAAO,WAAW,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,aAAa,GAAG,WAAW,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IAC1E,CAAC;IASO,gBAAgB,CACpB,IAAmB,EACnB,QAAsB,EACtB,MAMC;QAED,MAAM,OAAO,GAAa,EAAE,CAAC;QAE7B,IAAI,MAAM,CAAC,YAAY,IAAI,GAAG,EAAE,CAAC;YAC7B,OAAO,CAAC,IAAI,CAAC,iBAAiB,CAAC,MAAM,CAAC,YAAY,GAAG,GAAG,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;QAC9E,CAAC;QAED,IAAI,MAAM,CAAC,WAAW,IAAI,GAAG,EAAE,CAAC;YAC5B,OAAO,CAAC,IAAI,CAAC,uBAAuB,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC;QACxD,CAAC;aAAM,IAAI,MAAM,CAAC,WAAW,IAAI,GAAG,EAAE,CAAC;YACnC,OAAO,CAAC,IAAI,CAAC,mBAAmB,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC;QACpD,CAAC;QAED,IAAI,MAAM,CAAC,SAAS,IAAI,GAAG,EAAE,CAAC;YAC1B,OAAO,CAAC,IAAI,CAAC,mBAAmB,IAAI,CAAC,IAAI,GAAG,CAAC,CAAC;QAClD,CAAC;QAED,IAAI,IAAI,CAAC,OAAO,CAAC,aAAa,GAAG,CAAC,EAAE,CAAC;YACjC,OAAO,CAAC,IAAI,CAAC,oBAAoB,IAAI,CAAC,OAAO,CAAC,aAAa,SAAS,CAAC,CAAC;QAC1E,CAAC;QAED,IAAI,MAAM,CAAC,aAAa,IAAI,MAAM,CAAC,aAAa,IAAI,GAAG,EAAE,CAAC;YACtD,OAAO,CAAC,IAAI,CAAC,6BAA6B,CAAC,CAAC;QAChD,CAAC;QAED,OAAO,OAAO,CAAC,MAAM,GAAG,CAAC;YACrB,CAAC,CAAC,UAAU,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE;YAChC,CAAC,CAAC,gCAAgC,CAAC;IAC3C,CAAC;IAKO,mBAAmB,CAAC,MAM3B;QACG,MAAM,OAAO,GAAG;YACZ,OAAO,EAAE,GAAG;YACZ,MAAM,EAAE,GAAG;YACX,IAAI,EAAE,GAAG;YACT,QAAQ,EAAE,GAAG;YACb,QAAQ,EAAE,GAAG;SAChB,CAAC;QAEF,MAAM,UAAU,GACZ,MAAM,CAAC,YAAY,GAAG,OAAO,CAAC,OAAO;YACrC,MAAM,CAAC,WAAW,GAAG,OAAO,CAAC,MAAM;YACnC,MAAM,CAAC,SAAS,GAAG,OAAO,CAAC,IAAI;YAC/B,MAAM,CAAC,aAAa,GAAG,OAAO,CAAC,QAAQ;YACvC,CAAC,MAAM,CAAC,aAAa,IAAI,CAAC,CAAC,GAAG,OAAO,CAAC,QAAQ,CAAC;QAEnD,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,UAAU,CAAC,CAAC;IACnC,CAAC;IASD,kBAAkB,CACd,IAAmB,EACnB,iBAA2B;QAM3B,MAAM,QAAQ,GAAG,IAAI,CAAC,OAAO,CAAC,oBAAoB,IAAI,EAAE,CAAC;QACzD,MAAM,OAAO,GAAG,QAAQ,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,iBAAiB,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC;QAEzE,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACvB,OAAO;gBACH,UAAU,EAAE,IAAI;gBAChB,mBAAmB,EAAE,EAAE;gBACvB,MAAM,EAAE,qCAAqC;aAChD,CAAC;QACN,CAAC;QAED,OAAO;YACH,UAAU,EAAE,KAAK;YACjB,mBAAmB,EAAE,OAAO;YAC5B,MAAM,EAAE,yBAAyB,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE;SACxD,CAAC;IACN,CAAC;IAKD,kBAAkB,CACd,IAAmB,EACnB,cAAsB;QAKtB,MAAM,UAAU,GAAG,IAAI,CAAC,OAAO,CAAC,kBAAkB,IAAI,EAAE,CAAC;QACzD,MAAM,iBAAiB,GAAG,IAAI,CAAC,OAAO,CAAC,iBAAiB,IAAI,EAAE,CAAC;QAG/D,MAAM,mBAAmB,GAAG,iBAAiB,CAAC,IAAI,CAAC,MAAM,CAAC,EAAE,CACxD,cAAc,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,CAC9D,CAAC;QAEF,IAAI,mBAAmB,EAAE,CAAC;YACtB,OAAO;gBACH,UAAU,EAAE,KAAK;gBACjB,MAAM,EAAE,kCAAkC;aAC7C,CAAC;QACN,CAAC;QAGD,IAAI,UAAU,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC1B,OAAO;gBACH,UAAU,EAAE,IAAI;gBAChB,MAAM,EAAE,sBAAsB;aACjC,CAAC;QACN,CAAC;QAGD,MAAM,YAAY,GAAG,UAAU,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CACvC,cAAc,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,CAC3D,CAAC;QAEF,OAAO;YACH,UAAU,EAAE,YAAY;YACxB,MAAM,EAAE,YAAY;gBAChB,CAAC,CAAC,qCAAqC;gBACvC,CAAC,CAAC,4CAA4C;SACrD,CAAC;IACN,CAAC;IASD,SAAS;QACL,OAAO,EAAE,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC;IAC9B,CAAC;IAKD,YAAY,CAAC,OAAiC;QAC1C,IAAI,CAAC,MAAM,GAAG,qBAAqB,CAAC,KAAK,CAAC;YACtC,GAAG,IAAI,CAAC,MAAM;YACd,GAAG,OAAO;SACb,CAAC,CAAC;IACP,CAAC"}

package/dist/gene-bank/MarketplaceClient.d.ts

@@ -0,0 +1,26 @@
+import type { CognitiveGene, GeneSearchFilters } from './index.js';
+import type { GeneBank } from './GeneBank.js';
+import type { MetricsCollector } from '../monitoring/MetricsCollector.js';
+export interface MarketplaceClientOptions {
+    marketplaceUrl?: string;
+    apiKey?: string;
+}
+export declare class MarketplaceClient {
+    private geneBank;
+    private metricsCollector?;
+    readonly marketplaceUrl: string;
+    private apiKey;
+    constructor(geneBank: GeneBank, options?: MarketplaceClientOptions, metricsCollector?: MetricsCollector | undefined);
+    publishToMarketplace(geneId: string): Promise<{
+        success: boolean;
+        marketplaceId?: string;
+        error?: string;
+    }>;
+    discoverGenes(filters: Partial<GeneSearchFilters>): Promise<CognitiveGene[]>;
+    adoptFromMarketplace(marketplaceGeneId: string): Promise<CognitiveGene>;
+    private sanitizeForMarketplace;
+    private httpGet;
+    private httpPost;
+    private buildHeaders;
+}
+//# sourceMappingURL=MarketplaceClient.d.ts.map

package/dist/gene-bank/MarketplaceClient.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"MarketplaceClient.d.ts","sourceRoot":"","sources":["../../src/gene-bank/MarketplaceClient.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,aAAa,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAC;AACnE,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAC9C,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,mCAAmC,CAAC;AAY1E,MAAM,WAAW,wBAAwB;IACrC,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,MAAM,CAAC,EAAE,MAAM,CAAC;CACnB;AAED,qBAAa,iBAAiB;IAKtB,OAAO,CAAC,QAAQ;IAEhB,OAAO,CAAC,gBAAgB,CAAC;IAN7B,QAAQ,CAAC,cAAc,EAAE,MAAM,CAAC;IAChC,OAAO,CAAC,MAAM,CAAqB;gBAGvB,QAAQ,EAAE,QAAQ,EAC1B,OAAO,CAAC,EAAE,wBAAwB,EAC1B,gBAAgB,CAAC,EAAE,gBAAgB,YAAA;IAUzC,oBAAoB,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC;QAAE,OAAO,EAAE,OAAO,CAAC;QAAC,aAAa,CAAC,EAAE,MAAM,CAAC;QAAC,KAAK,CAAC,EAAE,MAAM,CAAA;KAAE,CAAC;IAmD3G,aAAa,CAAC,OAAO,EAAE,OAAO,CAAC,iBAAiB,CAAC,GAAG,OAAO,CAAC,aAAa,EAAE,CAAC;IA0C5E,oBAAoB,CAAC,iBAAiB,EAAE,MAAM,GAAG,OAAO,CAAC,aAAa,CAAC;IAsC7E,OAAO,CAAC,sBAAsB;YAMhB,OAAO;YAOP,QAAQ;IAQtB,OAAO,CAAC,YAAY;CASvB"}

package/dist/gene-bank/MarketplaceClient.js

@@ -0,0 +1,147 @@
+export class MarketplaceClient {
+    geneBank;
+    metricsCollector;
+    marketplaceUrl;
+    apiKey;
+    constructor(geneBank, options, metricsCollector) {
+        this.geneBank = geneBank;
+        this.metricsCollector = metricsCollector;
+        this.marketplaceUrl = options?.marketplaceUrl || 'https://market.gsep-platform.ai/v1';
+        this.apiKey = options?.apiKey;
+    }
+    async publishToMarketplace(geneId) {
+        const startTime = Date.now();
+        try {
+            const gene = await this.geneBank.getGene(geneId);
+            if (!gene)
+                throw new Error(`Gene ${geneId} not found in local bank.`);
+            if (gene.fitness.overallFitness < 0.8) {
+                return { success: false, error: 'Gene fitness too low for Marketplace (minimum 0.8).' };
+            }
+            const sanitizedInstruction = this.sanitizeForMarketplace(gene.content.instruction);
+            const payload = {
+                ...gene,
+                content: { ...gene.content, instruction: sanitizedInstruction },
+                tenant: { ...gene.tenant, scope: 'marketplace', verified: true },
+            };
+            const response = await this.httpPost('/genes', payload);
+            if (!response.ok) {
+                const body = await response.json().catch(() => ({ error: response.statusText }));
+                return { success: false, error: body.error || `HTTP ${response.status}` };
+            }
+            const result = await response.json();
+            const marketplaceId = result.id;
+            gene.tenant.scope = 'marketplace';
+            await this.geneBank.updateGene(gene);
+            this.metricsCollector?.logAudit({
+                level: 'info',
+                component: 'MarketplaceClient',
+                operation: 'publishToMarketplace',
+                message: `Gene ${gene.name} published to Marketplace.`,
+                duration: Date.now() - startTime,
+                metadata: { geneId, marketplaceId }
+            });
+            return { success: true, marketplaceId };
+        }
+        catch (error) {
+            return { success: false, error: error instanceof Error ? error.message : 'Unknown error' };
+        }
+    }
+    async discoverGenes(filters) {
+        try {
+            const params = new URLSearchParams();
+            if (filters.type?.length)
+                params.set('type', filters.type.join(','));
+            if (filters.domain?.length)
+                params.set('domain', filters.domain.join(','));
+            if (filters.tags?.length)
+                params.set('tags', filters.tags.join(','));
+            if (filters.minFitness !== undefined)
+                params.set('minFitness', String(filters.minFitness));
+            if (filters.minAdoptions !== undefined)
+                params.set('minAdoptions', String(filters.minAdoptions));
+            if (filters.sortBy)
+                params.set('sortBy', filters.sortBy);
+            if (filters.sortOrder)
+                params.set('sortOrder', filters.sortOrder);
+            if (filters.limit)
+                params.set('limit', String(filters.limit));
+            if (filters.offset)
+                params.set('offset', String(filters.offset));
+            const response = await this.httpGet(`/genes/search?${params.toString()}`);
+            if (!response.ok) {
+                return this.geneBank.searchGenes({
+                    ...filters,
+                    scope: ['marketplace'],
+                    verifiedOnly: true,
+                    minFitness: filters.minFitness ?? 0.8,
+                });
+            }
+            const body = await response.json();
+            return body.genes;
+        }
+        catch {
+            return this.geneBank.searchGenes({
+                ...filters,
+                scope: ['marketplace'],
+                verifiedOnly: true,
+                minFitness: filters.minFitness ?? 0.8,
+            });
+        }
+    }
+    async adoptFromMarketplace(marketplaceGeneId) {
+        const response = await this.httpGet(`/genes/${marketplaceGeneId}`);
+        if (!response.ok) {
+            throw new Error(`Gene ${marketplaceGeneId} not found in Marketplace (HTTP ${response.status}).`);
+        }
+        const targetGene = await response.json();
+        const agentId = this.geneBank.getConfig?.()?.agentId || 'unknown';
+        await this.httpPost(`/genes/${marketplaceGeneId}/adopt`, {
+            agentId,
+            fitnessBefore: undefined,
+        }).catch(() => { });
+        const localCopy = {
+            ...targetGene,
+            id: `adopted_${targetGene.id}_${Date.now()}`,
+            lineage: {
+                ...targetGene.lineage,
+                parentGeneId: targetGene.id,
+                ancestors: [...targetGene.lineage.ancestors, targetGene.id]
+            },
+            tenant: {
+                ...targetGene.tenant,
+                scope: 'tenant'
+            }
+        };
+        await this.geneBank.storeGene(localCopy);
+        return localCopy;
+    }
+    sanitizeForMarketplace(content) {
+        return content
+            .replace(/[a-zA-Z0-9._%+-]+@[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}/g, '[REDACTED_EMAIL]')
+            .replace(/\b([A-Z][a-z]+ [A-Z][a-z]+)\b/g, '[REDACTED_NAME]');
+    }
+    async httpGet(path) {
+        return fetch(`${this.marketplaceUrl}${path}`, {
+            method: 'GET',
+            headers: this.buildHeaders(),
+        });
+    }
+    async httpPost(path, body) {
+        return fetch(`${this.marketplaceUrl}${path}`, {
+            method: 'POST',
+            headers: this.buildHeaders(),
+            body: JSON.stringify(body),
+        });
+    }
+    buildHeaders() {
+        const headers = {
+            'Content-Type': 'application/json',
+        };
+        if (this.apiKey) {
+            headers['Authorization'] = `Bearer ${this.apiKey}`;
+        }
+        return headers;
+    }
+}
+//# sourceMappingURL=MarketplaceClient.js.map

package/dist/gene-bank/MarketplaceClient.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"MarketplaceClient.js","sourceRoot":"","sources":["../../src/gene-bank/MarketplaceClient.ts"],"names":[],"mappings":"AAmBA,MAAM,OAAO,iBAAiB;IAKd;IAEA;IANH,cAAc,CAAS;IACxB,MAAM,CAAqB;IAEnC,YACY,QAAkB,EAC1B,OAAkC,EAC1B,gBAAmC;QAFnC,aAAQ,GAAR,QAAQ,CAAU;QAElB,qBAAgB,GAAhB,gBAAgB,CAAmB;QAE3C,IAAI,CAAC,cAAc,GAAG,OAAO,EAAE,cAAc,IAAI,oCAAoC,CAAC;QACtF,IAAI,CAAC,MAAM,GAAG,OAAO,EAAE,MAAM,CAAC;IAClC,CAAC;IAMD,KAAK,CAAC,oBAAoB,CAAC,MAAc;QACrC,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;QAE7B,IAAI,CAAC;YACD,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;YACjD,IAAI,CAAC,IAAI;gBAAE,MAAM,IAAI,KAAK,CAAC,QAAQ,MAAM,2BAA2B,CAAC,CAAC;YAEtE,IAAI,IAAI,CAAC,OAAO,CAAC,cAAc,GAAG,GAAG,EAAE,CAAC;gBACpC,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,EAAE,qDAAqD,EAAE,CAAC;YAC5F,CAAC;YAGD,MAAM,oBAAoB,GAAG,IAAI,CAAC,sBAAsB,CAAC,IAAI,CAAC,OAAO,CAAC,WAAW,CAAC,CAAC;YACnF,MAAM,OAAO,GAAG;gBACZ,GAAG,IAAI;gBACP,OAAO,EAAE,EAAE,GAAG,IAAI,CAAC,OAAO,EAAE,WAAW,EAAE,oBAAoB,EAAE;gBAC/D,MAAM,EAAE,EAAE,GAAG,IAAI,CAAC,MAAM,EAAE,KAAK,EAAE,aAAsB,EAAE,QAAQ,EAAE,IAAI,EAAE;aAC5E,CAAC;YAEF,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;YAExD,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;gBACf,MAAM,IAAI,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAC,KAAK,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,KAAK,EAAE,QAAQ,CAAC,UAAU,EAAE,CAAC,CAAuB,CAAC;gBACvG,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,EAAE,IAAI,CAAC,KAAK,IAAI,QAAQ,QAAQ,CAAC,MAAM,EAAE,EAAE,CAAC;YAC9E,CAAC;YAED,MAAM,MAAM,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAoB,CAAC;YACvD,MAAM,aAAa,GAAG,MAAM,CAAC,EAAE,CAAC;YAGhC,IAAI,CAAC,MAAM,CAAC,KAAK,GAAG,aAAa,CAAC;YAClC,MAAM,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC;YAErC,IAAI,CAAC,gBAAgB,EAAE,QAAQ,CAAC;gBAC5B,KAAK,EAAE,MAAM;gBACb,SAAS,EAAE,mBAAmB;gBAC9B,SAAS,EAAE,sBAAsB;gBACjC,OAAO,EAAE,QAAQ,IAAI,CAAC,IAAI,4BAA4B;gBACtD,QAAQ,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,SAAS;gBAChC,QAAQ,EAAE,EAAE,MAAM,EAAE,aAAa,EAAE;aACtC,CAAC,CAAC;YAEH,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,aAAa,EAAE,CAAC;QAC5C,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACb,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,eAAe,EAAE,CAAC;QAC/F,CAAC;IACL,CAAC;IAKD,KAAK,CAAC,aAAa,CAAC,OAAmC;QACnD,IAAI,CAAC;YACD,MAAM,MAAM,GAAG,IAAI,eAAe,EAAE,CAAC;YACrC,IAAI,OAAO,CAAC,IAAI,EAAE,MAAM;gBAAE,MAAM,CAAC,GAAG,CAAC,MAAM,EAAE,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;YACrE,IAAI,OAAO,CAAC,MAAM,EAAE,MAAM;gBAAE,MAAM,CAAC,GAAG,CAAC,QAAQ,EAAE,OAAO,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;YAC3E,IAAI,OAAO,CAAC,IAAI,EAAE,MAAM;gBAAE,MAAM,CAAC,GAAG,CAAC,MAAM,EAAE,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;YACrE,IAAI,OAAO,CAAC,UAAU,KAAK,SAAS;gBAAE,MAAM,CAAC,GAAG,CAAC,YAAY,EAAE,MAAM,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC,CAAC;YAC3F,IAAI,OAAO,CAAC,YAAY,KAAK,SAAS;gBAAE,MAAM,CAAC,GAAG,CAAC,cAAc,EAAE,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC,CAAC;YACjG,IAAI,OAAO,CAAC,MAAM;gBAAE,MAAM,CAAC,GAAG,CAAC,QAAQ,EAAE,OAAO,CAAC,MAAM,CAAC,CAAC;YACzD,IAAI,OAAO,CAAC,SAAS;gBAAE,MAAM,CAAC,GAAG,CAAC,WAAW,EAAE,OAAO,CAAC,SAAS,CAAC,CAAC;YAClE,IAAI,OAAO,CAAC,KAAK;gBAAE,MAAM,CAAC,GAAG,CAAC,OAAO,EAAE,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC;YAC9D,IAAI,OAAO,CAAC,MAAM;gBAAE,MAAM,CAAC,GAAG,CAAC,QAAQ,EAAE,MAAM,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC;YAEjE,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,OAAO,CAAC,iBAAiB,MAAM,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC;YAE1E,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;gBAEf,OAAO,IAAI,CAAC,QAAQ,CAAC,WAAW,CAAC;oBAC7B,GAAG,OAAO;oBACV,KAAK,EAAE,CAAC,aAAa,CAAC;oBACtB,YAAY,EAAE,IAAI;oBAClB,UAAU,EAAE,OAAO,CAAC,UAAU,IAAI,GAAG;iBACxC,CAAC,CAAC;YACP,CAAC;YAED,MAAM,IAAI,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAgC,CAAC;YACjE,OAAO,IAAI,CAAC,KAAK,CAAC;QACtB,CAAC;QAAC,MAAM,CAAC;YAEL,OAAO,IAAI,CAAC,QAAQ,CAAC,WAAW,CAAC;gBAC7B,GAAG,OAAO;gBACV,KAAK,EAAE,CAAC,aAAa,CAAC;gBACtB,YAAY,EAAE,IAAI;gBAClB,UAAU,EAAE,OAAO,CAAC,UAAU,IAAI,GAAG;aACxC,CAAC,CAAC;QACP,CAAC;IACL,CAAC;IAMD,KAAK,CAAC,oBAAoB,CAAC,iBAAyB;QAEhD,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,OAAO,CAAC,UAAU,iBAAiB,EAAE,CAAC,CAAC;QACnE,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CAAC,QAAQ,iBAAiB,mCAAmC,QAAQ,CAAC,MAAM,IAAI,CAAC,CAAC;QACrG,CAAC;QAED,MAAM,UAAU,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAmB,CAAC;QAG1D,MAAM,OAAO,GAAG,IAAI,CAAC,QAAQ,CAAC,SAAS,EAAE,EAAE,EAAE,OAAO,IAAI,SAAS,CAAC;QAClE,MAAM,IAAI,CAAC,QAAQ,CAAC,UAAU,iBAAiB,QAAQ,EAAE;YACrD,OAAO;YACP,aAAa,EAAE,SAAS;SAC3B,CAAC,CAAC,KAAK,CAAC,GAAG,EAAE,GAAsB,CAAC,CAAC,CAAC;QAGvC,MAAM,SAAS,GAAkB;YAC7B,GAAG,UAAU;YACb,EAAE,EAAE,WAAW,UAAU,CAAC,EAAE,IAAI,IAAI,CAAC,GAAG,EAAE,EAAE;YAC5C,OAAO,EAAE;gBACL,GAAG,UAAU,CAAC,OAAO;gBACrB,YAAY,EAAE,UAAU,CAAC,EAAE;gBAC3B,SAAS,EAAE,CAAC,GAAG,UAAU,CAAC,OAAO,CAAC,SAAS,EAAE,UAAU,CAAC,EAAE,CAAC;aAC9D;YACD,MAAM,EAAE;gBACJ,GAAG,UAAU,CAAC,MAAM;gBACpB,KAAK,EAAE,QAAQ;aAClB;SACJ,CAAC;QAEF,MAAM,IAAI,CAAC,QAAQ,CAAC,SAAS,CAAC,SAAS,CAAC,CAAC;QACzC,OAAO,SAAS,CAAC;IACrB,CAAC;IAKO,sBAAsB,CAAC,OAAe;QAC1C,OAAO,OAAO;aACT,OAAO,CAAC,iDAAiD,EAAE,kBAAkB,CAAC;aAC9E,OAAO,CAAC,gCAAgC,EAAE,iBAAiB,CAAC,CAAC;IACtE,CAAC;IAEO,KAAK,CAAC,OAAO,CAAC,IAAY;QAC9B,OAAO,KAAK,CAAC,GAAG,IAAI,CAAC,cAAc,GAAG,IAAI,EAAE,EAAE;YAC1C,MAAM,EAAE,KAAK;YACb,OAAO,EAAE,IAAI,CAAC,YAAY,EAAE;SAC/B,CAAC,CAAC;IACP,CAAC;IAEO,KAAK,CAAC,QAAQ,CAAC,IAAY,EAAE,IAAa;QAC9C,OAAO,KAAK,CAAC,GAAG,IAAI,CAAC,cAAc,GAAG,IAAI,EAAE,EAAE;YAC1C,MAAM,EAAE,MAAM;YACd,OAAO,EAAE,IAAI,CAAC,YAAY,EAAE;YAC5B,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC;SAC7B,CAAC,CAAC;IACP,CAAC;IAEO,YAAY;QAChB,MAAM,OAAO,GAA2B;YACpC,cAAc,EAAE,kBAAkB;SACrC,CAAC;QACF,IAAI,IAAI,CAAC,MAAM,EAAE,CAAC;YACd,OAAO,CAAC,eAAe,CAAC,GAAG,UAAU,IAAI,CAAC,MAAM,EAAE,CAAC;QACvD,CAAC;QACD,OAAO,OAAO,CAAC;IACnB,CAAC;CACJ"}

package/dist/gene-bank/PGAIntegration.d.ts

@@ -0,0 +1,68 @@
+import type { CognitiveGene } from './CognitiveGene';
+import { GeneBank } from './GeneBank';
+import type { GeneStorageAdapter } from './GeneBank';
+import type { LLMAdapter } from '../interfaces/LLMAdapter';
+import type { MetricsCollector } from '../monitoring/MetricsCollector';
+interface GenomeBridge {
+    id: string;
+    previousPrompt?: string;
+    currentPrompt?: string;
+    taskContext?: string;
+    domain?: string;
+}
+interface MutationProposalBridge {
+    id?: string;
+    fitnessMetrics?: FitnessMetricsBridge;
+}
+interface FitnessMetricsBridge {
+    successRate?: number;
+    tokenEfficiency?: number;
+    quality?: number;
+    userSatisfaction?: number;
+}
+export interface PGAGeneBankConfig {
+    autoExtract?: boolean;
+    autoAdopt?: boolean;
+    minFitnessForExtraction?: number;
+    minFitnessGainForExtraction?: number;
+    enableTHK?: boolean;
+    storage: GeneStorageAdapter;
+    metricsCollector?: MetricsCollector;
+}
+export declare class PGAGeneBankIntegration {
+    private llm;
+    private config;
+    private tenantId;
+    private geneBank;
+    private geneExtractor;
+    private geneAdopters;
+    constructor(llm: LLMAdapter, config: PGAGeneBankConfig, tenantId: string);
+    onMutationPromoted(genome: GenomeBridge, mutation: MutationProposalBridge, oldFitness: number, newFitness: number): Promise<CognitiveGene | null>;
+    onTaskStart(genome: GenomeBridge, taskDescription: string, domain?: string): Promise<CognitiveGene[]>;
+    onTaskComplete(genome: GenomeBridge, taskSuccess: boolean, fitness: number): Promise<void>;
+    getEnhancedPrompt(genome: GenomeBridge, basePrompt: string): Promise<string>;
+    getGeneBank(): GeneBank;
+    getStats(): Promise<{
+        geneBank: import("./GeneBank").GeneBankStats;
+        adoptions: {
+            genomeId: string;
+            adoptedGenes: number;
+            config: {
+                agentId: string;
+                maxConcurrentAdoptions: number;
+                requireSandboxTest: boolean;
+                autoAdopt: boolean;
+                autoAdoptMinConfidence: number;
+                trackPerformance: boolean;
+                performanceWindowDays: number;
+            };
+        }[];
+    }>;
+    private extractPromptFromGenome;
+    private extractTaskContext;
+    private inferDomain;
+    private convertFitnessMetrics;
+    private generateTestCasesForTask;
+}
+export {};
+//# sourceMappingURL=PGAIntegration.d.ts.map

package/dist/gene-bank/PGAIntegration.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"PGAIntegration.d.ts","sourceRoot":"","sources":["../../src/gene-bank/PGAIntegration.ts"],"names":[],"mappings":"AASA,OAAO,KAAK,EACR,aAAa,EAGhB,MAAM,iBAAiB,CAAC;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAC;AAGtC,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAC;AACrD,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AAC3D,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,gCAAgC,CAAC;AAOvE,UAAU,YAAY;IAClB,EAAE,EAAE,MAAM,CAAC;IACX,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,MAAM,CAAC,EAAE,MAAM,CAAC;CACnB;AAED,UAAU,sBAAsB;IAC5B,EAAE,CAAC,EAAE,MAAM,CAAC;IACZ,cAAc,CAAC,EAAE,oBAAoB,CAAC;CACzC;AAED,UAAU,oBAAoB;IAC1B,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,gBAAgB,CAAC,EAAE,MAAM,CAAC;CAC7B;AAKD,MAAM,WAAW,iBAAiB;IAE9B,WAAW,CAAC,EAAE,OAAO,CAAC;IAGtB,SAAS,CAAC,EAAE,OAAO,CAAC;IAGpB,uBAAuB,CAAC,EAAE,MAAM,CAAC;IAGjC,2BAA2B,CAAC,EAAE,MAAM,CAAC;IAGrC,SAAS,CAAC,EAAE,OAAO,CAAC;IAGpB,OAAO,EAAE,kBAAkB,CAAC;IAG5B,gBAAgB,CAAC,EAAE,gBAAgB,CAAC;CACvC;AAUD,qBAAa,sBAAsB;IAM3B,OAAO,CAAC,GAAG;IACX,OAAO,CAAC,MAAM;IACd,OAAO,CAAC,QAAQ;IAPpB,OAAO,CAAC,QAAQ,CAAW;IAC3B,OAAO,CAAC,aAAa,CAAgB;IACrC,OAAO,CAAC,YAAY,CAAuC;gBAG/C,GAAG,EAAE,UAAU,EACf,MAAM,EAAE,iBAAiB,EACzB,QAAQ,EAAE,MAAM;IA+BtB,kBAAkB,CACpB,MAAM,EAAE,YAAY,EACpB,QAAQ,EAAE,sBAAsB,EAChC,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,GACnB,OAAO,CAAC,aAAa,GAAG,IAAI,CAAC;IA+C1B,WAAW,CACb,MAAM,EAAE,YAAY,EACpB,eAAe,EAAE,MAAM,EACvB,MAAM,CAAC,EAAE,MAAM,GAChB,OAAO,CAAC,aAAa,EAAE,CAAC;IAmDrB,cAAc,CAChB,MAAM,EAAE,YAAY,EACpB,WAAW,EAAE,OAAO,EACpB,OAAO,EAAE,MAAM,GAChB,OAAO,CAAC,IAAI,CAAC;IAkBV,iBAAiB,CACnB,MAAM,EAAE,YAAY,EACpB,UAAU,EAAE,MAAM,GACnB,OAAO,CAAC,MAAM,CAAC;IAYlB,WAAW,IAAI,QAAQ;IAOjB,QAAQ;;;;;;;;;;;;;;;;IAqBd,OAAO,CAAC,uBAAuB;IAO/B,OAAO,CAAC,kBAAkB;IAO1B,OAAO,CAAC,WAAW;IA6BnB,OAAO,CAAC,qBAAqB;IAa7B,OAAO,CAAC,wBAAwB;CAkBnC"}