@graphty/graph-io 0.3.47 → 0.3.49

package/dist/src/formats/xgmml/styles.js

@@ -4,17 +4,18 @@
  * property, and the locked ones under `lockedVisualProperties`), and no style. The reader turns those values into
  * the neutral vocabulary; the planner explains them. The writer does the reverse from what graphty draws.
  */
+import { canonBends } from "../../styles/canon/bends.js";
 import { STYLE_ISSUE } from "../../styles/codes.js";
 import { cytoscapeElementProperties, cytoscapeWritableProperties, } from "../../styles/cytoscape/emit.js";
 import { normalizeVisualProperties } from "../../styles/cytoscape/lexicon.js";
 import { emptyCytoscapeStyle } from "../../styles/cytoscape/mappings.js";
-import { cytoscapeBackground, resolveCytoscapeBypasses } from "../../styles/cytoscape/resolve.js";
-import { blockStyles, parseStyleBlock, STYLE_BLOCK_NAME } from "../../styles/io/block.js";
+import { cytoscapeBackground, edgeEnds, resolveCytoscapeBypasses, } from "../../styles/cytoscape/resolve.js";
+import { STYLE_BLOCK_NAME } from "../../styles/io/block.js";
+import { takeFromBlock } from "../../styles/io/round-trip.js";
 import { StyleNotes } from "../../styles/notes.js";
-import { styleFingerprint } from "../../styles/plan/features.js";
-import { plainCell, resolveStyles } from "../../styles/plan/resolve.js";
+import { plainCell } from "../../styles/plan/resolve.js";
 import { lossOf } from "../cx/styles.js";
-import { GRAPHICS_COLUMN, XGMML_ORIGIN_NAMESPACE } from "./constants.js";
+import { GRAPHICS_COLUMN, SUBGRAPH_COLUMN, XGMML_ORIGIN_NAMESPACE } from "./constants.js";
 /**
  * The name of a table's graphics column: the json column the XGMML reader keeps `<graphics>` in.
  * @param table - the node, edge or graph table
@@ -78,9 +79,14 @@ export function readXgmmlStyles(snapshot, context, settings) {
         const n = target === "node" ? snapshot.nodeCount : snapshot.edgeCount;
         const maps = graphicsBypasses(table, target, n, notes);
         const values = maps.some((m) => m !== null)
-            ? resolveCytoscapeBypasses(target, maps, { notes, budget: context.budget })
+            ? resolveCytoscapeBypasses(target, maps, {
+                notes,
+                budget: context.budget,
+                value: (column, i) => (table.has(column) ? plainCell(table.value(column, i)) : null),
+                ...(target === "edge" ? { ends: edgeEnds(snapshot, out.node.values) } : {}),
+            })
             : {};
-        hiddenToVisible(table, settings.hiddenColumn ?? null, n, values);
+        drawnAsDesktop(snapshot, target, out.node.values, values, settings);
         exactFromBlock(snapshot, target, values);
         out[target] = { values: nonEmpty(values) };
     }
@@ -95,6 +101,79 @@ export function readXgmmlStyles(snapshot, context, settings) {
         notes: notes.list(),
     };
 }
+/**
+ * What Cytoscape desktop draws of an XGMML file's resolved values: hidden elements, the groups it hides and the
+ * edges of every node it does not draw not visible, nodes with no label labeled by their names, and edge bends at the
+ * network origin.
+ * @param snapshot - the graph
+ * @param target - nodes or edges
+ * @param nodes - the node values per property (read for edges)
+ * @param values - the values per property, changed in place
+ * @param settings - the tool and the hidden-state column
+ */
+function drawnAsDesktop(snapshot, target, nodes, values, settings) {
+    const table = target === "node" ? snapshot.nodes : snapshot.edges;
+    const n = target === "node" ? snapshot.nodeCount : snapshot.edgeCount;
+    const desktop = settings.tool === "cytoscape";
+    if (target === "edge" && desktop) {
+        bendsAtOrigin(snapshot, values);
+    }
+    hiddenToVisible(table, settings.hiddenColumn ?? null, n, values);
+    hideWhatCytoscapeHides(snapshot, target, nodes, values);
+    if (target === "node") {
+        if (desktop && values.label === undefined && !snapshot.graph.has(STYLE_BLOCK_NAME)) {
+            nameLabels(table, n, values);
+        }
+    }
+}
+/**
+ * Every bend of an edge where Cytoscape desktop draws it from an XGMML file: at the network's origin. Its XGMML reader
+ * turns each `EDGE_BEND` handle (`cos,sin,ratio`, relative to the line between the two nodes) into a point while
+ * every node is still at the origin and keeps that point, so each handle of each edge is drawn at (0, 0) of the
+ * network, wherever the nodes then go (measured on Cytoscape 3.10.5's own SVG of an XGMML file with handles; its CX
+ * reader places the same handles along their lines). An edge whose nodes have no position keeps its handles.
+ * @param snapshot - the graph
+ * @param values - the edge values per property, changed in place
+ */
+function bendsAtOrigin(snapshot, values) {
+    const { bends } = values;
+    const position = snapshot.nodes.byRole("position");
+    if (bends === undefined || position === null) {
+        return;
+    }
+    const center = (i) => {
+        const v = position.isSet(i) ? position.value(i) : null;
+        return v === null ? null : [v[0], v[1]];
+    };
+    const { src, dst } = snapshot.edgeList();
+    values.bends = bends.map((v, e) => {
+        const [s, t] = [center(src[e]), center(dst[e])];
+        if (typeof v !== "string" || s === null || t === null) {
+            return v;
+        }
+        const handles = v.trim().split(/\s+/).length;
+        return (canonBends(s, t, Array.from({ length: handles }, () => [0, 0]), false) ?? v);
+    });
+}
+/**
+ * The labels Cytoscape shows for nodes whose graphics state none: its default style labels a node by its name, and
+ * a node with no `name` att is named by its `label=` (Cytoscape 2.x files often carry only that). Not for a file
+ * graphty wrote: its block says what to draw.
+ * @param table - the node table
+ * @param n - the node count
+ * @param values - the values per property, changed in place
+ */
+function nameLabels(table, n, values) {
+    const label = table.byRole("label")?.meta.name ?? null;
+    const text = (column, i) => {
+        const v = column !== null && table.has(column) ? plainCell(table.value(column, i)) : null;
+        return typeof v === "string" || typeof v === "number" ? String(v) : null;
+    };
+    const labels = Array.from({ length: n }, (_v, i) => text("name", i) ?? text(label, i));
+    if (labels.some((v) => v !== null)) {
+        values.label = labels;
+    }
+}
 /**
  * The styles of an XGMML file: its elements' resolved values, with Cytoscape desktop's default style beneath.
  * @param snapshot - the graph
@@ -113,54 +192,56 @@ export function readXgmmlFileStyles(snapshot, context) {
  * @param target - nodes or edges
  * @param values - the values per property, changed in place
  * @param dialect - the Cytoscape dialect the file's values are written in
+ * @param created - the order desktop creates the elements in, when the file is read with it (CX version 1)
  */
-export function exactFromBlock(snapshot, target, values, dialect = "desktop") {
+export function exactFromBlock(snapshot, target, values, dialect = "desktop", created) {
     const text = snapshot.graph.has(STYLE_BLOCK_NAME) ? plainCell(snapshot.graph.value(STYLE_BLOCK_NAME, 0)) : null;
     if (typeof text !== "string") {
         return;
     }
-    const parsed = parseStyleBlock(text, styleFingerprint(snapshot));
-    const ex = parsed.ok ? blockStyles(parsed.block, snapshot, "xgmml") : null;
-    if (ex === null) {
-        return;
-    }
-    const n = target === "node" ? snapshot.nodeCount : snapshot.edgeCount;
-    const want = new Map();
-    const exact = (property) => {
-        let held = want.get(property);
-        if (held === undefined) {
-            held = resolveStyles(ex, target, property, snapshot);
-            want.set(property, held);
-        }
-        return held;
-    };
-    // What each element's exact values are written as, read back the way the file is read.
-    const written = Array.from({ length: n }, (_v, i) => cytoscapeElementProperties(target, (property) => exact(property)[i] ?? null, dialect, () => undefined));
-    const readBack = resolveCytoscapeBypasses(target, written, { notes: new StyleNotes() });
-    for (const [property, native] of Object.entries(values)) {
-        const back = readBack[property];
-        if (native !== undefined && back !== undefined) {
-            values[property] = withBlockValues(native, back, exact(property));
-        }
-    }
-}
-/**
- * A property's values with the block's exact value wherever the file's value is what the writer wrote for it.
- * @param native - the file's values
- * @param back - what the writer wrote for the block's values, read back
- * @param w - the block's values
- * @returns the values, the file's own array when none changes
- */
-function withBlockValues(native, back, w) {
-    let changed = null;
-    for (let i = 0; i < native.length; i++) {
-        if (w[i] !== null && native[i] !== w[i] && native[i] === back[i]) {
-            changed ?? (changed = [...native]);
-            changed[i] = w[i];
+    takeFromBlock(snapshot, text, "xgmml", (t, block) => {
+        if (t !== target) {
+            return null;
         }
-    }
-    return changed ?? native;
+        const n = target === "node" ? snapshot.nodeCount : snapshot.edgeCount;
+        // What each element's exact values are written as, read back the way the file is read.
+        const written = Array.from({ length: n }, (_v, i) => cytoscapeElementProperties(target, (property) => block(target, property)[i] ?? null, dialect, () => undefined));
+        // Desktop fans the curved edges between the same two nodes by the nodes' size, as the file is read
+        const ends = target === "edge"
+            ? {
+                ends: {
+                    ...edgeEnds(snapshot, {
+                        width: block("node", "width"),
+                        height: block("node", "height"),
+                        borderWidth: block("node", "borderWidth"),
+                    }),
+                    ...(created === undefined ? {} : { created }),
+                },
+            }
+            : {};
+        const readBack = resolveCytoscapeBypasses(target, written, { notes: new StyleNotes(), ...ends });
+        return {
+            values,
+            properties: Object.keys(values).filter((p) => values[p] !== undefined && readBack[p] !== undefined),
+            readBack: (i) => (property) => readBack[property]?.[i] ?? null,
+            // a fan spacing, a curve or a loop's handles only desktop's fanning and looping give (graphty wrote none:
+            // EDGE_CURVED defaults to true there) is graphty's own default again, and so is a label's place beside its
+            // node, which desktop's anchors spell as an offset and a shift
+            take: (property, wanted) => wanted !== null || BLOCK_DEFAULTED.has(property),
+        };
+    });
 }
+/** What a file graphty wrote leaves unset where Cytoscape's reading of it gives a value. */
+const BLOCK_DEFAULTED = new Set([
+    "fanSpacing",
+    "curved",
+    "bends",
+    "bendCurve",
+    "labelOffsetX",
+    "labelOffsetY",
+    "labelShiftX",
+    "labelShiftY",
+]);
 /**
  * Marks the elements a hidden-state column holds true as not visible.
  * @param table - the node or edge table
@@ -183,6 +264,126 @@ export function hiddenToVisible(table, column, n, values) {
         values.visible = visible;
     }
 }
+/**
+ * Marks not visible what Cytoscape does not draw of its groups: an expanded group's own node (its members are drawn
+ * in its place), and every node inside a collapsed group (the group's node is drawn in their place). A group is
+ * collapsed when its nested graph's `__groupCollapsed.SUID` names the network being read. A file graphty wrote is
+ * left alone: its block says what to draw.
+ * @param snapshot - the graph
+ * @param values - the node values per property, changed in place
+ */
+function hideGroupsCytoscapeHides(snapshot, values) {
+    const parent = snapshot.nodes.byRole("parent");
+    if (parent === null || snapshot.graph.has(STYLE_BLOCK_NAME)) {
+        return;
+    }
+    const n = snapshot.nodeCount;
+    const members = membersOf(parent, n);
+    if (members.size === 0) {
+        return;
+    }
+    const network = snapshot.meta.extra?.xgmml?.graphId;
+    const visible = values.visible === undefined ? new Array(n).fill(null) : [...values.visible];
+    for (const [group, inside] of members) {
+        if (!collapsedIn(snapshot, group, network)) {
+            visible[group] = false;
+            continue;
+        }
+        for (const i of insideAtAnyDepth(group, inside, members)) {
+            visible[i] = false;
+        }
+    }
+    values.visible = visible;
+}
+/**
+ * Marks not visible what Cytoscape does not draw of its groups, and the edges of every node it does not draw.
+ * @param snapshot - the graph
+ * @param target - nodes or edges
+ * @param nodes - the node values per property (read for edges)
+ * @param values - the target's values per property, changed in place
+ */
+export function hideWhatCytoscapeHides(snapshot, target, nodes, values) {
+    if (target === "node") {
+        hideGroupsCytoscapeHides(snapshot, values);
+    }
+    else {
+        hideEdgesOfHiddenNodes(snapshot, nodes, values);
+    }
+}
+/**
+ * Marks not visible every edge with an end Cytoscape does not draw: a collapsed group's members' own edges (the
+ * group's meta-edges are drawn in their place), an expanded group node's meta-edges, and a hidden node's edges. A
+ * file graphty wrote is left alone: its block says what to draw.
+ * @param snapshot - the graph
+ * @param nodes - the node values per property
+ * @param values - the edge values per property, changed in place
+ */
+function hideEdgesOfHiddenNodes(snapshot, nodes, values) {
+    const shown = nodes.visible;
+    if (shown === undefined || !shown.includes(false) || snapshot.graph.has(STYLE_BLOCK_NAME)) {
+        return;
+    }
+    const { src, dst } = snapshot.edgeList();
+    const visible = values.visible === undefined ? new Array(src.length).fill(null) : [...values.visible];
+    for (let e = 0; e < src.length; e++) {
+        if (shown[src[e]] === false || shown[dst[e]] === false) {
+            visible[e] = false;
+        }
+    }
+    values.visible = visible;
+}
+/**
+ * Each group node's direct members.
+ * @param parent - the node parent column
+ * @param n - the node count
+ * @returns group node to its members
+ */
+function membersOf(parent, n) {
+    const members = new Map();
+    for (let i = 0; i < n; i++) {
+        const g = parent.isSet(i) ? plainCell(parent.value(i)) : null;
+        if (typeof g === "number" && g !== i) {
+            members.set(g, [...(members.get(g) ?? []), i]);
+        }
+    }
+    return members;
+}
+/**
+ * Every node inside a group, at any depth.
+ * @param group - the group node
+ * @param inside - its direct members
+ * @param members - each group node's direct members
+ * @returns the nodes inside
+ */
+function insideAtAnyDepth(group, inside, members) {
+    const stack = [...inside];
+    const seen = new Set([group]);
+    const out = new Set();
+    for (let i = stack.pop(); i !== undefined; i = stack.pop()) {
+        if (!seen.has(i)) {
+            seen.add(i);
+            out.add(i);
+            stack.push(...(members.get(i) ?? []));
+        }
+    }
+    return out;
+}
+/**
+ * Whether a group node's nested graph says the group is collapsed in a network (`__groupCollapsed.SUID` lists it).
+ * @param snapshot - the graph
+ * @param group - the group node
+ * @param network - the id of the network being read, or anything else when unknown
+ * @returns true when collapsed there
+ */
+function collapsedIn(snapshot, group, network) {
+    if (typeof network !== "string" || !snapshot.nodes.has(SUBGRAPH_COLUMN)) {
+        return false;
+    }
+    const sub = plainCell(snapshot.nodes.value(SUBGRAPH_COLUMN, group));
+    const atts = sub !== null && typeof sub === "object" ? sub.atts : null;
+    const collapsed = atts !== null && typeof atts === "object" ? atts["__groupCollapsed.SUID"] : null;
+    return Array.isArray(collapsed) && collapsed.some((v) => String(v) === network);
+}
 /**
  * The properties with at least one value.
  * @param values - per property, each element's value
@@ -198,32 +399,49 @@ export function nonEmpty(values) {
     return out;
 }
 /**
- * The graph's background from its own graphics (`NETWORK_BACKGROUND_PAINT`).
+ * The graph's background: its own graphics' `NETWORK_BACKGROUND_PAINT`, the locked one (`lockedVisualProperties`, a
+ * session view's bypass) on top, over the style's own.
  * @param snapshot - the graph
  * @param notes - where a bad value is noted
+ * @param style - the style whose network defaults the graph's graphics override, or none
  * @returns the graph style
+ * @category Styles
  */
-function graphStyleOf(snapshot, notes) {
-    const name = graphicsColumnOf(snapshot.graph);
-    const g = name === null ? null : plainCell(snapshot.graph.value(name, 0));
-    if (g === null || typeof g !== "object") {
-        return {};
+export function graphStyleOf(snapshot, notes, style) {
+    const merged = emptyCytoscapeStyle();
+    for (const [k, v] of style?.network.defaults ?? []) {
+        merged.network.defaults.set(k, v);
     }
-    const style = emptyCytoscapeStyle();
-    for (const [k, v] of normalizeVisualProperties("node", g, notes)) {
-        if (k.startsWith("NETWORK_")) {
-            style.network.defaults.set(k, v);
-        }
+    for (const [k, v] of networkBypasses(snapshot, notes)) {
+        merged.network.defaults.set(k, v);
     }
-    const background = cytoscapeBackground(style, notes);
+    const background = cytoscapeBackground(merged, notes);
     return background === null ? {} : { background };
 }
+/**
+ * The network visual properties a graph's own graphics set, the locked ones (`lockedVisualProperties`) last.
+ * @param snapshot - the graph
+ * @param notes - where too-deep nesting is noted
+ * @returns visual property name to raw value, in the order they apply
+ */
+function networkBypasses(snapshot, notes) {
+    const name = graphicsColumnOf(snapshot.graph);
+    const g = name === null ? null : plainCell(snapshot.graph.value(name, 0));
+    if (g === null || typeof g !== "object" || Array.isArray(g)) {
+        return [];
+    }
+    const locked = Object.hasOwn(g, "lockedVisualProperties")
+        ? g.lockedVisualProperties
+        : undefined;
+    return [g, locked].flatMap((layer) => [...normalizeVisualProperties("node", layer, notes)].filter(([k]) => k.startsWith("NETWORK_")));
+}
 // ------------------------------------------------------------------ writing
 /**
  * What the XGMML writer holds natively: every visual property Cytoscape keeps per element, and the graph's
  * background. The block and the tagged values go into graph and element `<att>`s.
  */
 export const XGMML_STYLE_CAPABILITIES = Object.freeze({
+    tool: "cytoscape",
     node: Object.freeze(cytoscapeWritableProperties("node", "desktop")),
     edge: Object.freeze(cytoscapeWritableProperties("edge", "desktop")),
     graph: Object.freeze(["background"]),

package/dist/src/formats/xgmml/styles.js.map

@@ -1 +1 @@
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package/dist/src/index.d.ts

@@ -14,8 +14,16 @@ export { defineLineFormat, type LineAttributes, type LineFormat, type LineGraph
 export { type CompareOptions, compareSnapshots, describeDiffs, type SnapshotDiff } from "./common/compare.js";
 export { type CommonExportOptions, type CommonImportOptions, type ExportCapabilities, type GraphChoiceOptions, type GraphExporter, type GraphImporter, type GraphListing, ImportError, type ImportInput, type ImportIssue, type ImportReport, type IssueCategory, type LossNote, } from "./types.js";
 export { ChildrenCsr, childrenCsr, childrenFromColumn, type ChildrenOptions, type ContainmentRole, type DepthFirstOrder, } from "./children.js";
-export { type BuilderSeed, checkExport, createRegistry, downloadGraph, type DownloadGraphOptions, exportGraph, type ExportGraphOptions, exportGraphToBlob, exportGraphToBytes, exportGraphToString, type FormatInfo, FormatRegistry, importAllGraphs, importGraph, type ImportGraphOptions, type ImportGraphResult, listFormats, listGraphs, loadFromFile, loadFromUrl, type LoadFromUrlOptions, registry, sniff, SNIFF_FAILED_CODE, UNKNOWN_FORMAT_CODE, } from "./registry.js";
+export { type BuilderSeed, checkExport, createRegistry, downloadGraph, type DownloadGraphOptions, expandFromSource, exportGraph, type ExportGraphOptions, exportGraphToBlob, exportGraphToBytes, exportGraphToString, type FormatInfo, FormatRegistry, importAllGraphs, importFromSource, importGraph, type ImportGraphOptions, type ImportGraphResult, listFormats, listFromSource, listGraphs, listSources, loadFromFile, loadFromSource, loadFromUrl, type LoadFromUrlOptions, probeSource, registerSource, registry, sniff, SNIFF_FAILED_CODE, UNKNOWN_FORMAT_CODE, validateSource, } from "./registry.js";
 export { extensionOf, type FormatName, GRAPH_FORMATS, type GraphFormatName, headBytes, normalizeMimeType, rankFormats, SNIFF_HEAD_BYTES, sniffFormat, type SniffHints, sniffJsonDialectHead, type SniffResult, } from "./sniff.js";
+export { SOURCE_ISSUE, type SourceBlockedCause, type SourceIssueCode, type SourceIssueParams, } from "./sources/codes.js";
+export { type AwsSigV4Options, type CredentialBind, credentials, fromStorableCredential, type StorableCredential, storableCredential, } from "./sources/credentials.js";
+export { defineSource } from "./sources/define.js";
+export { CYPHER_SOURCE_ID, NDEX_SOURCE_ID, NEO4J_SOURCE_ID, NEPTUNE_SOURCE_ID, OPENALEX_SOURCE_ID, REST_SOURCE_ID, SOURCE_ATTR_PREFIX, SOURCE_DEGREE_ATTR, SOURCE_ENTITY_ATTR, SOURCE_FORMAT_PREFIX, SOURCE_STUB_ATTR, SPARQL_SOURCE_ID, } from "./sources/ids.js";
+export { type SourceParamsMap } from "./sources/params.js";
+export { sha256Hex } from "./sources/sigv4.js";
+export { type Recording, recordingFrom, type ReplayCall, type ReplayFetch, replayFetch, type ReplayOptions, } from "./sources/testing.js";
+export { type AwsCredentials, type Credential, type CredentialKind, type EdgeRecord, type ExpandRequest, type FileFn, type GraphSource, type ImportFn, type LazySource, type LoadFromSourceOptions, type NodeRecord, type QueryLanguage, type RecordBatch, type RecordsFn, type RetryOptions, type SourceBase, type SourceContext, type SourceCursor, type SourceDescriptor, type SourceFeature, type SourceFile, type SourceFinish, type SourceFreshness, type SourceInfo, type SourceKind, type SourceLimitOptions, type SourceLimits, type SourceListing, type SourceListItem, type SourceListQuery, type SourceParamDescriptor, type SourceParamType, type SourceProbe, type SourceReportInfo, type SourceRequestInit, type SourceRuntime, type SourceRuntimeReason, type SourceSample, type SourceTotal, type SourceValidators, } from "./sources/types.js";
 export { CSV_CAPABILITIES, CSV_ISSUE, CSV_LOSS, type CsvColumnRef, csvExporter, type CsvExportOptions, csvImporter, type CsvImportOptions, } from "./formats/csv/index.js";
 export { CX_CAPABILITIES, CX_ISSUE, CX_LOSS, cxExporter, type CxExportOptions, cxImporter, type CxImportOptions, } from "./formats/cx/index.js";
 export { CX2_CAPABILITIES, CX2_ISSUE, CX2_LOSS, cx2Exporter, type Cx2ExportOptions, cx2Importer, type Cx2ImportOptions, } from "./formats/cx2/index.js";
@@ -24,7 +32,7 @@ export { DOT_ISSUE, DOT_LOSS, DOT_STYLE_BLOCK_ATTRIBUTE, DOT_STYLE_CAPABILITIES,
 export { GEXF_1_2_CAPABILITIES, GEXF_ISSUE, GEXF_LOSS, GEXF_STYLE_CAPABILITIES, gexfExporter, type GexfExportOptions, gexfImporter, type GexfImportOptions, type GexfVersion, GRAPHTY_XML_NAMESPACE, } from "./formats/gexf/index.js";
 export { GML_ISSUE, GML_LOSS, GML_STYLE_BLOCK_KEY, GML_STYLE_CAPABILITIES, gmlExporter, type GmlExportOptions, gmlImporter, type GmlImportOptions, } from "./formats/gml/index.js";
 export { GRAPHML_ISSUE, GRAPHML_LOSS, GRAPHML_STYLE_CAPABILITIES, graphmlExporter, type GraphmlExportOptions, graphmlImporter, type GraphmlImportOptions, } from "./formats/graphml/index.js";
-export { dialectCapabilities, JSON_DIALECTS, JSON_ISSUE, JSON_LOSS, jsonCapabilities, type JsonDialect, jsonExporter, type JsonExportOptions, type JsonImportDialect, jsonImporter, type JsonImportOptions, type JsonShapeMeta, jsonShapeOf, } from "./formats/json/index.js";
+export { dialectCapabilities, JSON_DIALECTS, JSON_ISSUE, JSON_LOSS, jsonCapabilities, type JsonDialect, jsonExporter, type JsonExportOptions, type JsonImportDialect, jsonImporter, type JsonImportOptions, type JsonShapeMeta, jsonShapeOf, sniffJsonDialect, } from "./formats/json/index.js";
 export { exportNeo4jFiles, ID_SPACE_COLUMN, LABELS_COLUMN, NEO4J_CAPABILITIES, NEO4J_ISSUE, NEO4J_LOSS, neo4jExporter, type Neo4jExportOptions, type Neo4jFile, neo4jImporter, type Neo4jImportOptions, ORIGINAL_ID_COLUMN, TYPE_COLUMN, } from "./formats/neo4j/index.js";
 export { OBO_CAPABILITIES, OBO_ISSUE, OBO_LOSS, oboExporter, type OboExportOptions, oboImporter, type OboImportOptions, } from "./formats/obo/index.js";
 export { PAJEK_ISSUE, PAJEK_LOSS, PAJEK_STYLE_CAPABILITIES, PAJEK_STYLE_COMMENT, pajekExporter, type PajekExportOptions, pajekImporter, type PajekImportOptions, } from "./formats/pajek/index.js";

package/dist/src/index.d.ts.map

@@ -1 +1 @@
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package/dist/src/index.js

@@ -23,8 +23,17 @@ export { compareSnapshots, describeDiffs } from "./common/compare.js";
 export { ImportError, } from "./types.js";
 // ============================================================ registry, sniffing, children (8.2)
 export { ChildrenCsr, childrenCsr, childrenFromColumn, } from "./children.js";
-export { checkExport, createRegistry, downloadGraph, exportGraph, exportGraphToBlob, exportGraphToBytes, exportGraphToString, FormatRegistry, importAllGraphs, importGraph, listFormats, listGraphs, loadFromFile, loadFromUrl, registry, sniff, SNIFF_FAILED_CODE, UNKNOWN_FORMAT_CODE, } from "./registry.js";
+export { checkExport, createRegistry, downloadGraph, expandFromSource, exportGraph, exportGraphToBlob, exportGraphToBytes, exportGraphToString, FormatRegistry, importAllGraphs, importFromSource, importGraph, listFormats, listFromSource, listGraphs, listSources, loadFromFile, loadFromSource, loadFromUrl, probeSource, registerSource, registry, sniff, SNIFF_FAILED_CODE, UNKNOWN_FORMAT_CODE, validateSource, } from "./registry.js";
 export { extensionOf, GRAPH_FORMATS, headBytes, normalizeMimeType, rankFormats, SNIFF_HEAD_BYTES, sniffFormat, sniffJsonDialectHead, } from "./sniff.js";
+// ============================================================ network sources (experimental)
+// The contract, the load functions and credentials; each built-in source's code is its own subpath
+// (@graphty/graph-io/sources/ndex, /cypher, /rest, /sparql), loaded on first use.
+export { SOURCE_ISSUE, } from "./sources/codes.js";
+export { credentials, fromStorableCredential, storableCredential, } from "./sources/credentials.js";
+export { defineSource } from "./sources/define.js";
+export { CYPHER_SOURCE_ID, NDEX_SOURCE_ID, NEO4J_SOURCE_ID, NEPTUNE_SOURCE_ID, OPENALEX_SOURCE_ID, REST_SOURCE_ID, SOURCE_ATTR_PREFIX, SOURCE_DEGREE_ATTR, SOURCE_ENTITY_ATTR, SOURCE_FORMAT_PREFIX, SOURCE_STUB_ATTR, SPARQL_SOURCE_ID, } from "./sources/ids.js";
+export { sha256Hex } from "./sources/sigv4.js";
+export { recordingFrom, replayFetch, } from "./sources/testing.js";
 // ============================================================ formats (8.4, 8.5)
 export { CSV_CAPABILITIES, CSV_ISSUE, CSV_LOSS, csvExporter, csvImporter, } from "./formats/csv/index.js";
 export { CX_CAPABILITIES, CX_ISSUE, CX_LOSS, cxExporter, cxImporter, } from "./formats/cx/index.js";
@@ -34,7 +43,7 @@ export { DOT_ISSUE, DOT_LOSS, DOT_STYLE_BLOCK_ATTRIBUTE, DOT_STYLE_CAPABILITIES,
 export { GEXF_1_2_CAPABILITIES, GEXF_ISSUE, GEXF_LOSS, GEXF_STYLE_CAPABILITIES, gexfExporter, gexfImporter, GRAPHTY_XML_NAMESPACE, } from "./formats/gexf/index.js";
 export { GML_ISSUE, GML_LOSS, GML_STYLE_BLOCK_KEY, GML_STYLE_CAPABILITIES, gmlExporter, gmlImporter, } from "./formats/gml/index.js";
 export { GRAPHML_ISSUE, GRAPHML_LOSS, GRAPHML_STYLE_CAPABILITIES, graphmlExporter, graphmlImporter, } from "./formats/graphml/index.js";
-export { dialectCapabilities, JSON_DIALECTS, JSON_ISSUE, JSON_LOSS, jsonCapabilities, jsonExporter, jsonImporter, jsonShapeOf, } from "./formats/json/index.js";
+export { dialectCapabilities, JSON_DIALECTS, JSON_ISSUE, JSON_LOSS, jsonCapabilities, jsonExporter, jsonImporter, jsonShapeOf, sniffJsonDialect, } from "./formats/json/index.js";
 export { exportNeo4jFiles, ID_SPACE_COLUMN, LABELS_COLUMN, NEO4J_CAPABILITIES, NEO4J_ISSUE, NEO4J_LOSS, neo4jExporter, neo4jImporter, ORIGINAL_ID_COLUMN, TYPE_COLUMN, } from "./formats/neo4j/index.js";
 export { OBO_CAPABILITIES, OBO_ISSUE, OBO_LOSS, oboExporter, oboImporter, } from "./formats/obo/index.js";
 export { PAJEK_ISSUE, PAJEK_LOSS, PAJEK_STYLE_CAPABILITIES, PAJEK_STYLE_COMMENT, pajekExporter, pajekImporter, } from "./formats/pajek/index.js";

package/dist/src/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,uFAAuF;AACvF,iGAAiG;AACjG,qGAAqG;AACrG,iGAAiG;AACjG,0BAA0B;AAC1B,OAAO,EAEH,YAAY,EACZ,gBAAgB,EAGhB,aAAa,GAChB,MAAM,uBAAuB,CAAC;AAE/B,6FAA6F;AAC7F,OAAO,EAAE,gBAAgB,EAAwD,MAAM,yBAAyB,CAAC;AAEjH,gFAAgF;AAChF,OAAO,EAAuB,gBAAgB,EAAE,aAAa,EAAqB,MAAM,qBAAqB,CAAC;AAE9G,wFAAwF;AACxF,OAAO,EAQH,WAAW,GAMd,MAAM,YAAY,CAAC;AAEpB,kGAAkG;AAClG,OAAO,EACH,WAAW,EACX,WAAW,EACX,kBAAkB,GAIrB,MAAM,eAAe,CAAC;AACvB,OAAO,EAEH,WAAW,EACX,cAAc,EACd,aAAa,EAEb,gBAAgB,EAChB,WAAW,EAEX,iBAAiB,EACjB,kBAAkB,EAClB,mBAAmB,EAEnB,cAAc,EACd,eAAe,EACf,gBAAgB,EAChB,WAAW,EAGX,WAAW,EACX,cAAc,EACd,UAAU,EACV,WAAW,EACX,YAAY,EACZ,cAAc,EACd,WAAW,EAEX,WAAW,EACX,cAAc,EACd,QAAQ,EACR,KAAK,EACL,iBAAiB,EACjB,mBAAmB,EACnB,cAAc,GACjB,MAAM,eAAe,CAAC;AACvB,OAAO,EACH,WAAW,EAEX,aAAa,EAEb,SAAS,EACT,iBAAiB,EACjB,WAAW,EACX,gBAAgB,EAChB,WAAW,EAEX,oBAAoB,GAEvB,MAAM,YAAY,CAAC;AAEpB,8FAA8F;AAC9F,mGAAmG;AACnG,kFAAkF;AAClF,OAAO,EACH,YAAY,GAIf,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAGH,WAAW,EACX,sBAAsB,EAEtB,kBAAkB,GACrB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AACnD,OAAO,EACH,gBAAgB,EAChB,cAAc,EACd,eAAe,EACf,iBAAiB,EACjB,kBAAkB,EAClB,cAAc,EACd,kBAAkB,EAClB,kBAAkB,EAClB,kBAAkB,EAClB,oBAAoB,EACpB,gBAAgB,EAChB,gBAAgB,GACnB,MAAM,kBAAkB,CAAC;AAE1B,OAAO,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAC;AAC/C,OAAO,EAEH,aAAa,EAGb,WAAW,GAEd,MAAM,sBAAsB,CAAC;AA4C9B,kFAAkF;AAClF,OAAO,EACH,gBAAgB,EAChB,SAAS,EACT,QAAQ,EAER,WAAW,EAEX,WAAW,GAEd,MAAM,wBAAwB,CAAC;AAChC,OAAO,EACH,eAAe,EACf,QAAQ,EACR,OAAO,EACP,UAAU,EAEV,UAAU,GAEb,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACH,gBAAgB,EAChB,SAAS,EACT,QAAQ,EACR,WAAW,EAEX,WAAW,GAEd,MAAM,wBAAwB,CAAC;AAChC,OAAO,EACH,gBAAgB,EAChB,SAAS,EACT,QAAQ,EACR,WAAW,EAEX,WAAW,GAEd,MAAM,wBAAwB,CAAC;AAChC,OAAO,EACH,SAAS,EACT,QAAQ,EACR,yBAAyB,EACzB,sBAAsB,EACtB,WAAW,EAEX,WAAW,GAEd,MAAM,wBAAwB,CAAC;AAChC,OAAO,EACH,qBAAqB,EACrB,UAAU,EACV,SAAS,EACT,uBAAuB,EACvB,YAAY,EAEZ,YAAY,EAGZ,qBAAqB,GACxB,MAAM,yBAAyB,CAAC;AACjC,OAAO,EACH,SAAS,EACT,QAAQ,EACR,mBAAmB,EACnB,sBAAsB,EACtB,WAAW,EAEX,WAAW,GAEd,MAAM,wBAAwB,CAAC;AAChC,OAAO,EACH,aAAa,EACb,YAAY,EACZ,0BAA0B,EAC1B,eAAe,EAEf,eAAe,GAElB,MAAM,4BAA4B,CAAC;AACpC,OAAO,EACH,mBAAmB,EACnB,aAAa,EACb,UAAU,EACV,SAAS,EACT,gBAAgB,EAEhB,YAAY,EAGZ,YAAY,EAGZ,WAAW,EACX,gBAAgB,GACnB,MAAM,yBAAyB,CAAC;AACjC,OAAO,EACH,gBAAgB,EAChB,eAAe,EACf,aAAa,EACb,kBAAkB,EAClB,WAAW,EACX,UAAU,EACV,aAAa,EAGb,aAAa,EAEb,kBAAkB,EAClB,WAAW,GACd,MAAM,0BAA0B,CAAC;AAClC,OAAO,EACH,gBAAgB,EAChB,SAAS,EACT,QAAQ,EACR,WAAW,EAEX,WAAW,GAEd,MAAM,wBAAwB,CAAC;AAChC,OAAO,EACH,WAAW,EACX,UAAU,EACV,wBAAwB,EACxB,mBAAmB,EACnB,aAAa,EAEb,aAAa,GAEhB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EACH,WAAW,EACX,UAAU,EACV,aAAa,EAEb,aAAa,GAEhB,MAAM,0BAA0B,CAAC;AAElC,iHAAiH;AACjH,OAAO,EACH,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,eAAe,EACf,cAAc,EACd,YAAY,EAEZ,eAAe,EACf,iBAAiB,GACpB,MAAM,wBAAwB,CAAC;AAChC,cAAc,mBAAmB,CAAC;AAClC,OAAO,EACH,eAAe,EACf,qBAAqB,EACrB,sBAAsB,EACtB,iBAAiB,EAGjB,oBAAoB,EACpB,aAAa,EACb,WAAW,EAEX,WAAW,GAEd,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACH,YAAY,EACZ,iBAAiB,EAGjB,SAAS,EACT,IAAI,EACJ,aAAa,EACb,eAAe,EACf,WAAW,EAEX,WAAW,GACd,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,SAAS,EAAE,aAAa,EAAE,aAAa,EAAE,MAAM,oBAAoB,CAAC;AACvG,OAAO,EACH,WAAW,EACX,QAAQ,EACR,YAAY,EACZ,cAAc,EACd,SAAS,EACT,sBAAsB,GACzB,MAAM,iBAAiB,CAAC;AACzB,OAAO,EACH,eAAe,EACf,WAAW,EACX,iBAAiB,EACjB,aAAa,EACb,UAAU,EAEV,QAAQ,EACR,UAAU,EACV,cAAc,GACjB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACH,WAAW,EACX,mBAAmB,EACnB,cAAc,EACd,WAAW,EAEX,iBAAiB,EACjB,mBAAmB,EAGnB,oBAAoB,EACpB,oBAAoB,EACpB,gBAAgB,GACnB,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EACH,mBAAmB,EACnB,YAAY,EAEZ,aAAa,EAEb,gBAAgB,GACnB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EACH,cAAc,EACd,aAAa,EACb,aAAa,EACb,cAAc,EAEd,yBAAyB,GAC5B,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EACH,WAAW,EAEX,eAAe,EACf,aAAa,EACb,eAAe,GAClB,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EACH,YAAY,EACZ,YAAY,EACZ,mBAAmB,EACnB,YAAY,EACZ,QAAQ,EAER,gBAAgB,GACnB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EACH,iBAAiB,EACjB,aAAa,EACb,WAAW,EAEX,mBAAmB,EACnB,eAAe,EAEf,cAAc,EACd,YAAY,GACf,MAAM,iBAAiB,CAAC"}

package/dist/src/positions/convert.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"convert.d.ts","sourceRoot":"","sources":["../../../src/positions/convert.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAC;AAEtD;;;;;GAKG;AACH,wBAAgB,KAAK,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAEvC;AAWD;;;;;;GAMG;AACH,wBAAgB,SAAS,CACrB,CAAC,EAAE,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,EAC3B,KAAK,EAAE,mBAAmB,EAC1B,IAAI,EAAE,SAAS,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,IAAI,EACtC,KAAK,EAAE,OAAO,GACf,IAAI,CAYN;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,eAAe,CAC3B,MAAM,EAAE,YAAY,EACpB,KAAK,EAAE,mBAAmB,EAC1B,KAAK,CAAC,EAAE;IAAE,KAAK,EAAE,YAAY,CAAC;IAAC,MAAM,EAAE,YAAY,CAAA;CAAE,GACtD,YAAY,CAqBd;AAED;;;;;GAKG;AACH,wBAAgB,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,GAAG,IAAI,CAOtD;AAaD;;;;;;;;;;;GAWG;AACH,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,YAAY,GAAG,YAAY,CAGnF"}

package/dist/src/positions/convert.js

@@ -12,6 +12,14 @@
 export function flipY(y) {
     return y === 0 ? 0 : -y;
 }
+/**
+ * How much longer a unit of y is than a unit of x, for a program that stretches its axes apart.
+ * @param extra - how the file spells its coordinates
+ * @returns `pxPerUnitY / pxPerUnit`, 1 when either is absent
+ */
+function yStretch(extra) {
+    return extra.pxPerUnit === undefined || extra.pxPerUnitY === undefined ? 1 : extra.pxPerUnitY / extra.pxPerUnit;
+}
 /**
  * One coordinate from a file's spelling into the neutral convention, in place.
  * @param p - x, y, z as the file wrote them; becomes the node's center, y up
@@ -20,6 +28,7 @@ export function flipY(y) {
  * @param realZ - whether the file has a z that differs between nodes
  */
 export function toNeutral(p, extra, size, realZ) {
+    p[1] *= yStretch(extra);
     if (extra.anchor === "top-left" && size !== null) {
         p[0] += size[0] / 2;
         p[1] += extra.yAxis === "down" ? size[1] / 2 : -size[1] / 2;
@@ -46,8 +55,9 @@ export function toNeutral(p, extra, size, realZ) {
 export function toFilePositions(coords, extra, sizes) {
     const out = new Float64Array(coords.length);
     const down = extra.yAxis === "down";
+    const stretch = yStretch(extra);
     for (let i = 0; i < coords.length; i += 3) {
-        let y = coords[i + 1];
+        let y = coords[i + 1] / stretch;
         let z = coords[i + 2];
         if (down) {
             y = flipY(y);