@graphty/graph-io 0.3.47 → 0.3.49

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (770) hide show
  1. package/dist/chunks/{approximations-wWjCRzKj.js → approximations-Bzn3L-je.js} +2 -2
  2. package/dist/chunks/{approximations-wWjCRzKj.js.map → approximations-Bzn3L-je.js.map} +1 -1
  3. package/dist/chunks/bends-BGXjv_U4.js +129 -0
  4. package/dist/chunks/bends-BGXjv_U4.js.map +1 -0
  5. package/dist/chunks/{block-DiGq58c3.js → block-iptrlMBb.js} +947 -134
  6. package/dist/chunks/block-iptrlMBb.js.map +1 -0
  7. package/dist/chunks/choose-CczZJaX_.js +717 -0
  8. package/dist/chunks/choose-CczZJaX_.js.map +1 -0
  9. package/dist/chunks/codes-BE2xir2k.js +157 -0
  10. package/dist/chunks/codes-BE2xir2k.js.map +1 -0
  11. package/dist/chunks/{constants-BKwqelYD.js → constants-CKkYLPtt.js} +2 -2
  12. package/dist/chunks/{constants-BKwqelYD.js.map → constants-CKkYLPtt.js.map} +1 -1
  13. package/dist/chunks/context-C3p0RQxR.js +664 -0
  14. package/dist/chunks/context-C3p0RQxR.js.map +1 -0
  15. package/dist/chunks/{convert-BcQ8_jMo.js → convert-Ct2zelbQ.js} +7 -2
  16. package/dist/chunks/convert-Ct2zelbQ.js.map +1 -0
  17. package/dist/chunks/credentials-DXHx7nwR.js +349 -0
  18. package/dist/chunks/credentials-DXHx7nwR.js.map +1 -0
  19. package/dist/chunks/cx-export-Bt6NoqTQ.js +259 -0
  20. package/dist/chunks/cx-export-Bt6NoqTQ.js.map +1 -0
  21. package/dist/chunks/descriptor-B28U25x4.js +60 -0
  22. package/dist/chunks/descriptor-B28U25x4.js.map +1 -0
  23. package/dist/chunks/descriptor-C-YDhtsn.js +48 -0
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  25. package/dist/chunks/descriptor-DLA5kINx.js +142 -0
  26. package/dist/chunks/descriptor-DLA5kINx.js.map +1 -0
  27. package/dist/chunks/{emit-CwU8cUmG.js → emit-BwHQkZle.js} +1690 -103
  28. package/dist/chunks/emit-BwHQkZle.js.map +1 -0
  29. package/dist/chunks/{escape-CgzxiYPg.js → escape-CuCIzNMB.js} +12 -12
  30. package/dist/chunks/{escape-CgzxiYPg.js.map → escape-CuCIzNMB.js.map} +1 -1
  31. package/dist/chunks/{export-BvqAXCKh.js → export-Cha4dRFz.js} +48 -1780
  32. package/dist/chunks/export-Cha4dRFz.js.map +1 -0
  33. package/dist/chunks/{exporter--Mk9gXCJ.js → exporter-BP6otMO6.js} +6 -4
  34. package/dist/chunks/{exporter--Mk9gXCJ.js.map → exporter-BP6otMO6.js.map} +1 -1
  35. package/dist/chunks/{exporter-CrDWIyiq.js → exporter-D2CETOMK.js} +1222 -154
  36. package/dist/chunks/exporter-D2CETOMK.js.map +1 -0
  37. package/dist/chunks/{exporter-DndFlGSa.js → exporter-D9yMtocA.js} +7 -6
  38. package/dist/chunks/{exporter-DndFlGSa.js.map → exporter-D9yMtocA.js.map} +1 -1
  39. package/dist/chunks/exporter-_jrBTnos.js +1009 -0
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  41. package/dist/chunks/{exporter-CJgfhF-l.js → exporter-nDfxIK5D.js} +9 -7
  42. package/dist/chunks/{exporter-CJgfhF-l.js.map → exporter-nDfxIK5D.js.map} +1 -1
  43. package/dist/chunks/format-BXiAb-1h.js +408 -0
  44. package/dist/chunks/format-BXiAb-1h.js.map +1 -0
  45. package/dist/chunks/{generic-Dq1ntt9q.js → generic-ymWCETAJ.js} +387 -31
  46. package/dist/chunks/generic-ymWCETAJ.js.map +1 -0
  47. package/dist/chunks/{importer-CMmeMWlC.js → importer-B92x1xY5.js} +15 -263
  48. package/dist/chunks/importer-B92x1xY5.js.map +1 -0
  49. package/dist/chunks/{importer-DiZRmOQG.js → importer-CT9mJ1nn.js} +328 -90
  50. package/dist/chunks/importer-CT9mJ1nn.js.map +1 -0
  51. package/dist/chunks/{importer-COTK9Tsl.js → importer-DaLTjbds.js} +116 -1099
  52. package/dist/chunks/importer-DaLTjbds.js.map +1 -0
  53. package/dist/chunks/{importer-iFYPEKaJ.js → importer-GREKMdIf.js} +28 -16
  54. package/dist/chunks/importer-GREKMdIf.js.map +1 -0
  55. package/dist/chunks/{importer-BSvfrX_h.js → importer-PqaaKKnY.js} +23 -1016
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  57. package/dist/chunks/{importer-yh_aBCU6.js → importer-Vn5QvmmJ.js} +66 -12
  58. package/dist/chunks/importer-Vn5QvmmJ.js.map +1 -0
  59. package/dist/chunks/{importer-e6LGpqHB.js → importer-vRq4h3j5.js} +1470 -354
  60. package/dist/chunks/importer-vRq4h3j5.js.map +1 -0
  61. package/dist/chunks/input-CAxt_aV-.js +1397 -0
  62. package/dist/chunks/input-CAxt_aV-.js.map +1 -0
  63. package/dist/chunks/{json-elements-DJZRZ6jd.js → json-elements-Cq76WjnZ.js} +4 -4
  64. package/dist/chunks/{json-elements-DJZRZ6jd.js.map → json-elements-Cq76WjnZ.js.map} +1 -1
  65. package/dist/chunks/{lexicon-CT69Kd87.js → lexicon-Clf4QIyl.js} +299 -77
  66. package/dist/chunks/lexicon-Clf4QIyl.js.map +1 -0
  67. package/dist/chunks/{ontology-export-G4MqRdux.js → ontology-export-OMo91mb0.js} +4 -3
  68. package/dist/chunks/{ontology-export-G4MqRdux.js.map → ontology-export-OMo91mb0.js.map} +1 -1
  69. package/dist/chunks/{records-CiaWZrFH.js → records-NJiYvekn.js} +2 -2
  70. package/dist/chunks/{records-CiaWZrFH.js.map → records-NJiYvekn.js.map} +1 -1
  71. package/dist/chunks/{format-BpQBx8MZ.js → report-CwMfYa9J.js} +70 -127
  72. package/dist/chunks/report-CwMfYa9J.js.map +1 -0
  73. package/dist/chunks/round-trip-Zm3_ivgq.js +79 -0
  74. package/dist/chunks/round-trip-Zm3_ivgq.js.map +1 -0
  75. package/dist/chunks/sigv4-EokFic1V.js +247 -0
  76. package/dist/chunks/sigv4-EokFic1V.js.map +1 -0
  77. package/dist/chunks/{styles-BQnsga7p.js → styles-CCs214_3.js} +1300 -168
  78. package/dist/chunks/styles-CCs214_3.js.map +1 -0
  79. package/dist/chunks/styles-Cm62yyQX.js +2812 -0
  80. package/dist/chunks/styles-Cm62yyQX.js.map +1 -0
  81. package/dist/chunks/styles-DPQQIig4.js +1928 -0
  82. package/dist/chunks/styles-DPQQIig4.js.map +1 -0
  83. package/dist/chunks/styles-yed-UMFdNqze.js +1213 -0
  84. package/dist/chunks/styles-yed-UMFdNqze.js.map +1 -0
  85. package/dist/chunks/{text-CzJNFOS9.js → text-ystE2bYi.js} +2 -2
  86. package/dist/chunks/{text-CzJNFOS9.js.map → text-ystE2bYi.js.map} +1 -1
  87. package/dist/csv.js +7 -5
  88. package/dist/csv.js.map +1 -1
  89. package/dist/cx.js +5 -4
  90. package/dist/cx.js.map +1 -1
  91. package/dist/cx2.js +2 -2
  92. package/dist/cys.js +1 -1
  93. package/dist/dot.js +5 -4
  94. package/dist/dot.js.map +1 -1
  95. package/dist/gexf.js +42 -10
  96. package/dist/gexf.js.map +1 -1
  97. package/dist/gml.js +850 -193
  98. package/dist/gml.js.map +1 -1
  99. package/dist/graph-io.js +1189 -220
  100. package/dist/graph-io.js.map +1 -1
  101. package/dist/graphml.js +3 -3
  102. package/dist/json.js +3 -2
  103. package/dist/neo4j.js +6 -4
  104. package/dist/neo4j.js.map +1 -1
  105. package/dist/obo.js +1 -1
  106. package/dist/pajek.js +1 -1
  107. package/dist/positions.js +45 -3
  108. package/dist/positions.js.map +1 -1
  109. package/dist/sources-cypher.d.ts +1 -0
  110. package/dist/sources-cypher.js +1351 -0
  111. package/dist/sources-cypher.js.map +1 -0
  112. package/dist/sources-ndex.d.ts +1 -0
  113. package/dist/sources-ndex.js +278 -0
  114. package/dist/sources-ndex.js.map +1 -0
  115. package/dist/sources-rest.d.ts +1 -0
  116. package/dist/sources-rest.js +1377 -0
  117. package/dist/sources-rest.js.map +1 -0
  118. package/dist/sources-sparql.d.ts +1 -0
  119. package/dist/sources-sparql.js +405 -0
  120. package/dist/sources-sparql.js.map +1 -0
  121. package/dist/src/common/report.d.ts +6 -3
  122. package/dist/src/common/report.d.ts.map +1 -1
  123. package/dist/src/common/report.js +15 -9
  124. package/dist/src/common/report.js.map +1 -1
  125. package/dist/src/formats/cx/importer.d.ts.map +1 -1
  126. package/dist/src/formats/cx/importer.js +5 -1
  127. package/dist/src/formats/cx/importer.js.map +1 -1
  128. package/dist/src/formats/cx/styles.d.ts +24 -1
  129. package/dist/src/formats/cx/styles.d.ts.map +1 -1
  130. package/dist/src/formats/cx/styles.js +118 -11
  131. package/dist/src/formats/cx/styles.js.map +1 -1
  132. package/dist/src/formats/cx2/importer.d.ts.map +1 -1
  133. package/dist/src/formats/cx2/importer.js +1 -0
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  135. package/dist/src/formats/cx2/styles.d.ts.map +1 -1
  136. package/dist/src/formats/cx2/styles.js +3 -1
  137. package/dist/src/formats/cx2/styles.js.map +1 -1
  138. package/dist/src/formats/cys/importer.d.ts.map +1 -1
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  141. package/dist/src/formats/cys/styles.d.ts +2 -0
  142. package/dist/src/formats/cys/styles.d.ts.map +1 -1
  143. package/dist/src/formats/cys/styles.js +15 -7
  144. package/dist/src/formats/cys/styles.js.map +1 -1
  145. package/dist/src/formats/dot/drawing.d.ts +98 -0
  146. package/dist/src/formats/dot/drawing.d.ts.map +1 -0
  147. package/dist/src/formats/dot/drawing.js +734 -0
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  149. package/dist/src/formats/dot/importer.d.ts.map +1 -1
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  151. package/dist/src/formats/dot/importer.js.map +1 -1
  152. package/dist/src/formats/dot/label-places.d.ts +34 -0
  153. package/dist/src/formats/dot/label-places.d.ts.map +1 -0
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  155. package/dist/src/formats/dot/label-places.js.map +1 -0
  156. package/dist/src/formats/dot/record.d.ts +50 -0
  157. package/dist/src/formats/dot/record.d.ts.map +1 -0
  158. package/dist/src/formats/dot/record.js +275 -0
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  160. package/dist/src/formats/dot/styles.d.ts +62 -2
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  164. package/dist/src/formats/gexf/dialog-metrics.d.ts +15 -0
  165. package/dist/src/formats/gexf/dialog-metrics.d.ts.map +1 -0
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  168. package/dist/src/formats/gexf/importer.d.ts +7 -0
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  172. package/dist/src/formats/gexf/preview.d.ts +77 -0
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  183. package/dist/src/formats/gml/importer.d.ts +5 -2
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  187. package/dist/src/formats/gml/index.d.ts +1 -1
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  191. package/dist/src/formats/gml/positions.d.ts +7 -0
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  213. package/dist/src/formats/json/dialect.d.ts +3 -2
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  225. package/dist/src/formats/json/positions.d.ts +5 -2
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  275. package/dist/src/positions/types.d.ts +59 -0
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  277. package/dist/src/registry.d.ts +173 -1
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  297. package/dist/src/sources/cypher/descriptor.d.ts +21 -0
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@@ -0,0 +1,560 @@
1
+ /**
2
+ * Cytoscape desktop's charts (`NODE_CUSTOMGRAPHICS_1` .. `_9` holding `org.cytoscape.PieChart:{...}`,
3
+ * `org.cytoscape.RingChart:{...}`, `BarChart`, `LineChart`, `BoxChart` or `HeatMapChart`), read per node from the
4
+ * node's own data as the neutral `pie*` properties (pie and ring) and `chart*` properties (the others)
5
+ * (https://manual.cytoscape.org/en/stable/Styles.html#using-graphics-in-styles).
6
+ *
7
+ * As Cytoscape 3.10.5 draws them (measured from its own SVG export): each slice is its data column's share of the
8
+ * node's values, the slices run counter-clockwise from `cy_startAngle` degrees counter-clockwise from 3 o'clock,
9
+ * the disc is 0.9 of the node across (of `NODE_CUSTOMGRAPHICS_SIZE_<slot>` with `nodeCustomGraphicsSizeSync` off),
10
+ * and a ring's hole is `cy_holeSize` (default 0.4) of its radius. The same pie
11
+ * drawn clockwise is its slices in reverse order from where the last one ends.
12
+ */
13
+ import { num6 } from "../canon/number.js";
14
+ /** How far across the node Cytoscape draws a pie, measured from its SVG export. */
15
+ const CHART_ACROSS = 0.9;
16
+ /** A ring chart's hole when its options name none (Cytoscape's `RingChart` default). */
17
+ const RING_HOLE = 0.4;
18
+ /** The custom graphics slots, in the order Cytoscape stacks them. */
19
+ const SLOTS = Array.from({ length: 9 }, (_, k) => `NODE_CUSTOMGRAPHICS_${String(k + 1)}`);
20
+ /** A Cytoscape chart class name, without its package. */
21
+ const CHART_CLASS = /^org\.cytoscape\.(PieChart|RingChart|BarChart|LineChart|BoxChart|HeatMapChart)$/;
22
+ /**
23
+ * The chart a custom graphics value holds, or null for anything else.
24
+ * @param raw - the value
25
+ * @returns the chart's kind and options
26
+ */
27
+ function chartOf(raw) {
28
+ // CX2 writes the chart as an object, the desktop, CX and sessions as `<class>:<options as JSON>`
29
+ if (typeof raw === "object" && raw !== null && !Array.isArray(raw)) {
30
+ const o = raw;
31
+ const kind = CHART_CLASS.exec(typeof o.name === "string" ? o.name : "")?.[1];
32
+ return kind !== undefined && typeof o.properties === "object" && o.properties !== null
33
+ ? { kind, ring: kind === "RingChart", options: o.properties }
34
+ : null;
35
+ }
36
+ if (typeof raw !== "string") {
37
+ return null;
38
+ }
39
+ const m = /^(org\.cytoscape\.\w+):(\{.*\})\s*$/s.exec(raw.trim());
40
+ const kind = m === null ? undefined : CHART_CLASS.exec(m[1])?.[1];
41
+ if (m === null || kind === undefined) {
42
+ return null;
43
+ }
44
+ try {
45
+ const options = JSON.parse(m[2]);
46
+ return typeof options === "object" && options !== null
47
+ ? { kind, ring: kind === "RingChart", options: options }
48
+ : null;
49
+ }
50
+ catch {
51
+ return null;
52
+ }
53
+ }
54
+ /** Where each of Cytoscape's anchors is on a box, as fractions of its half width and half height, y down. */
55
+ const ANCHORS = {
56
+ C: [0, 0],
57
+ N: [0, -1],
58
+ NE: [1, -1],
59
+ E: [1, 0],
60
+ SE: [1, 1],
61
+ S: [0, 1],
62
+ SW: [-1, 1],
63
+ W: [-1, 0],
64
+ NW: [-1, -1],
65
+ };
66
+ /**
67
+ * A custom graphic's position: `NODE_CUSTOMGRAPHICS_POSITION_<slot>` as the desktop writes it
68
+ * (`<node anchor>,<graphic anchor>,<justification>,<x offset>,<y offset>`) or as CX2 does (an object of
69
+ * `ENTITY_ANCHOR`, `GRAPHICS_ANCHOR`, `MARGIN_X`, `MARGIN_Y`).
70
+ * @param raw - the value
71
+ * @returns the anchors and offsets, or null when it does not read
72
+ */
73
+ function positionOf(raw) {
74
+ let parts;
75
+ if (typeof raw === "string") {
76
+ const p = raw.split(",");
77
+ parts = [p[0], p[1], p[3], p[4]];
78
+ }
79
+ else if (typeof raw === "object" && raw !== null) {
80
+ const o = raw;
81
+ parts = [o.ENTITY_ANCHOR, o.GRAPHICS_ANCHOR, o.MARGIN_X, o.MARGIN_Y];
82
+ }
83
+ else {
84
+ return null;
85
+ }
86
+ const anchor = (v) => typeof v === "string" ? ANCHORS[v.trim().toUpperCase()] : undefined;
87
+ const [node, chart] = [anchor(parts[0]), anchor(parts[1])];
88
+ const [x, y] = [Number(parts[2] ?? 0), Number(parts[3] ?? 0)];
89
+ return node === undefined || chart === undefined
90
+ ? null
91
+ : { node, chart, x: Number.isFinite(x) ? x : 0, y: Number.isFinite(y) ? y : 0 };
92
+ }
93
+ /**
94
+ * A node's values for a chart's data columns: one per column, or the items of a single list column.
95
+ * @param columns - the chart's data columns
96
+ * @param value - reads the node's value of a column
97
+ * @returns the values, NaN where one is not a number
98
+ */
99
+ function valuesOf(columns, value) {
100
+ const first = columns.length === 1 ? value(columns[0]) : undefined;
101
+ const raw = Array.isArray(first) ? first : columns.map((c) => value(c));
102
+ return raw.map((v) => (typeof v === "number" ? v : Number(v)));
103
+ }
104
+ /**
105
+ * Sets each node's `pie*` properties from the first pie or ring chart among its custom graphics.
106
+ * @param out - the node values per property, changed in place
107
+ * @param n - the node count
108
+ * @param graphicOf - a node's resolved value of a custom graphics slot
109
+ * @param value - a node's value of a data column
110
+ * @param sizeSync - whether charts are fitted to their node (`nodeCustomGraphicsSizeSync`, true by default)
111
+ */
112
+ export function readCytoscapeCharts(out, n, graphicOf, value, sizeSync) {
113
+ const col = (property) => {
114
+ const existing = out[property];
115
+ if (existing !== undefined) {
116
+ return existing;
117
+ }
118
+ const fresh = new Array(n).fill(null);
119
+ out[property] = fresh;
120
+ return fresh;
121
+ };
122
+ for (let i = 0; i < n; i++) {
123
+ const slot = SLOTS.findIndex((vp) => chartOf(graphicOf(vp, i)) !== null);
124
+ const chart = slot < 0 ? null : chartOf(graphicOf(SLOTS[slot], i));
125
+ if (chart === null) {
126
+ continue;
127
+ }
128
+ const [w, h] = [out.width?.[i], out.height?.[i]];
129
+ chartOnNode(chart, {
130
+ put: (property, v) => {
131
+ col(property)[i] = v;
132
+ },
133
+ get: (property) => out[property]?.[i],
134
+ graphic: (name) => graphicOf(`${name}_${String(slot + 1)}`, i),
135
+ value: (column) => value(column, i),
136
+ w: typeof w === "number" ? w : null,
137
+ h: typeof h === "number" ? h : null,
138
+ }, sizeSync);
139
+ }
140
+ }
141
+ /**
142
+ * A node's shorter side, when its width and height are known.
143
+ * @param node - the node
144
+ * @returns the side, or null
145
+ */
146
+ function shorterSide(node) {
147
+ return node.w !== null && node.h !== null ? Math.min(node.w, node.h) : null;
148
+ }
149
+ /**
150
+ * Sets a node's `pie*` or `chart*` properties from its chart.
151
+ * @param chart - the chart
152
+ * @param chart.kind - its class
153
+ * @param chart.ring - whether it is a ring
154
+ * @param chart.options - its options
155
+ * @param node - the node
156
+ * @param sizeSync - whether charts are fitted to their node
157
+ */
158
+ function chartOnNode(chart, node, sizeSync) {
159
+ const { options } = chart;
160
+ const colors = Array.isArray(options.cy_colors) ? options.cy_colors.map(String) : [];
161
+ const columns = Array.isArray(options.cy_dataColumns) ? options.cy_dataColumns.map(String) : [];
162
+ const values = valuesOf(columns, node.value);
163
+ if (chart.kind === "PieChart" || chart.kind === "RingChart") {
164
+ pieOnNode(chart.ring, options, values, colors, node, sizeSync);
165
+ return;
166
+ }
167
+ const own = Number(node.graphic("NODE_CUSTOMGRAPHICS_SIZE"));
168
+ const side = shorterSide(node);
169
+ const ownSize = own > 0;
170
+ const fitted = sizeSync || !ownSize;
171
+ const box = side === null ? null : { disc: CHART_ACROSS * (fitted ? side : own), side };
172
+ for (const [property, v] of Object.entries(plotChart(chart.kind, options, values, colors, box))) {
173
+ node.put(property, v);
174
+ }
175
+ }
176
+ /**
177
+ * Each slice of a pie: a value above 0 with a color, its share of the values above 0.
178
+ * @param values - the node's values
179
+ * @param colors - the chart's colors
180
+ * @returns the slices in order
181
+ */
182
+ function pieSlices(values, colors) {
183
+ const total = values.reduce((sum, v) => sum + (Number.isFinite(v) && v > 0 ? v : 0), 0);
184
+ return values.flatMap((v, k) => Number.isFinite(v) && v > 0 && colors[k] !== undefined
185
+ ? [{ color: colors[k].toLowerCase(), size: v / total }]
186
+ : []);
187
+ }
188
+ /**
189
+ * Sets a node's `pie*` properties from a pie or ring chart.
190
+ * @param ring - whether it is a ring
191
+ * @param options - the chart's options
192
+ * @param values - the node's values
193
+ * @param colors - the chart's colors
194
+ * @param node - the node
195
+ * @param sizeSync - whether charts are fitted to their node
196
+ */
197
+ function pieOnNode(ring, options, values, colors, node, sizeSync) {
198
+ const slices = pieSlices(values, colors);
199
+ if (slices.length === 0) {
200
+ return;
201
+ }
202
+ const start = Number(options.cy_startAngle ?? 0);
203
+ const from = Number.isFinite(start) ? start : 0;
204
+ // counter-clockwise from `start` past 3 o'clock is clockwise from 12 o'clock at 90 - start, slices reversed
205
+ const reversed = [...slices].reverse();
206
+ node.put("pieColors", reversed.map((s) => s.color).join(" "));
207
+ node.put("pieSizes", reversed.map((s) => String(num6(s.size))).join(" "));
208
+ // fitted to the node, or with `nodeCustomGraphicsSizeSync` off at the slot's own size
209
+ const own = Number(node.graphic("NODE_CUSTOMGRAPHICS_SIZE"));
210
+ const side = shorterSide(node);
211
+ const ownSize = own > 0;
212
+ const fitted = sizeSync || !ownSize || side === null || side <= 0;
213
+ node.put("pieRadius", fitted ? CHART_ACROSS : num6((CHART_ACROSS * own) / side));
214
+ pieOffset(node, fitted, own);
215
+ node.put("pieRotation", num6((((90 - from) % 360) + 360) % 360));
216
+ const texts = pieItemLabels(options, values, colors, node.value, {
217
+ start: from,
218
+ radius: (CHART_ACROSS * (fitted || side === null ? 1 : own / side) * (side ?? 0)) / 2,
219
+ dx: Number(node.get("pieOffsetX") ?? 0),
220
+ dy: Number(node.get("pieOffsetY") ?? 0),
221
+ w: node.w,
222
+ h: node.h,
223
+ });
224
+ if (texts !== null && (node.get("shapeTexts") ?? null) === null) {
225
+ node.put("shapeTexts", texts);
226
+ }
227
+ if (ring) {
228
+ const hole = Number(options.cy_holeSize ?? RING_HOLE);
229
+ node.put("pieHole", Number.isFinite(hole) ? Math.max(0, Math.min(1, hole)) : RING_HOLE);
230
+ }
231
+ }
232
+ /**
233
+ * A pie's offset from its node's center, as Cytoscape 3.10.5 draws a chart's position (measured from its SVG export
234
+ * of the specimen sheets, every anchor pair they hold, fitted and at a size of its own): the node anchor scales by
235
+ * the drawn disc and the chart anchor by the node, so on a 60 node NW,NW moves a fitted 54 disc 3 px down and right
236
+ * and a 21.6 disc 19 px, C,NW puts either one's center 30 px down and right, and E,W puts a fitted disc 57 px right;
237
+ * then the position's offsets (y down).
238
+ * @param node - the node
239
+ * @param fitted - whether the pie is fitted to the node
240
+ * @param own - the slot's own size
241
+ */
242
+ function pieOffset(node, fitted, own) {
243
+ const at = positionOf(node.graphic("NODE_CUSTOMGRAPHICS_POSITION"));
244
+ const { w, h } = node;
245
+ if (at === null || w === null || h === null) {
246
+ return;
247
+ }
248
+ const disc = CHART_ACROSS * (fitted ? Math.min(w, h) : own);
249
+ const dx = (at.node[0] * disc) / 2 - (at.chart[0] * w) / 2 + at.x;
250
+ const dy = (at.node[1] * disc) / 2 - (at.chart[1] * h) / 2 + at.y;
251
+ if (dx !== 0 || dy !== 0) {
252
+ node.put("pieOffsetX", num6(dx));
253
+ node.put("pieOffsetY", num6(dy));
254
+ }
255
+ }
256
+ /**
257
+ * Where Cytoscape's pie draws an item label: centered on its slice's middle, this share of the radius out (measured
258
+ * from its SVG export of xgmml-specimen-images-charts-p5 and -p7: 16.4 to 17.3 px from the center of a 27.2 px disc,
259
+ * at 1, 10 and 20 px).
260
+ */
261
+ const ITEM_LABEL_RADIUS = 0.62;
262
+ /**
263
+ * The size of a chart's item labels, in the file's lengths, when its options name none: Cytoscape 3.10.5 draws them 1
264
+ * px tall (xgmml-specimen-images-charts-p5 `pie-item-labels`).
265
+ */
266
+ const ITEM_LABEL_FONT_SIZE = 1;
267
+ /** The color JFreeChart draws Cytoscape's chart labels in. */
268
+ const CHART_LABEL_COLOR = "#404040";
269
+ /**
270
+ * A chart's item labels: `cy_itemLabels`, or the node's list in `cy_itemLabelsColumn`, one per data column; none
271
+ * unless `cy_showItemLabels` is on.
272
+ * @param options - the chart's options
273
+ * @param value - reads the node's value of a column
274
+ * @returns the labels, or null
275
+ */
276
+ function itemLabelsOf(options, value) {
277
+ if (options.cy_showItemLabels !== true) {
278
+ return null;
279
+ }
280
+ const column = typeof options.cy_itemLabelsColumn === "string" ? value(options.cy_itemLabelsColumn) : undefined;
281
+ const list = Array.isArray(column) ? column : options.cy_itemLabels;
282
+ return Array.isArray(list) ? list.map((v) => (v === null || v === undefined ? "" : String(v))) : null;
283
+ }
284
+ /**
285
+ * A pie's or a ring's item labels as the node's further texts (`shapeTexts`), as Cytoscape 3.10.5 draws them
286
+ * (measured from its SVG export of the specimen sheets): each slice's label centered on the middle of its slice, a
287
+ * share of the disc's radius out from its center, in `cy_itemLabelFontSize` (the file's lengths) and JFreeChart's
288
+ * dark gray.
289
+ * @param options - the chart's options
290
+ * @param values - the node's values, one per data column
291
+ * @param colors - the chart's colors, one per data column
292
+ * @param value - reads the node's value of a column
293
+ * @param at - where the disc is: its start angle (degrees counter-clockwise from 3 o'clock), radius and offset from
294
+ * the node's center (y down), and the node's width and height
295
+ * @param at.start - start angle
296
+ * @param at.radius - the disc's radius
297
+ * @param at.dx - offset right
298
+ * @param at.dy - offset down
299
+ * @param at.w - the node's width
300
+ * @param at.h - the node's height
301
+ * @returns the texts as JSON, or null for none
302
+ */
303
+ function pieItemLabels(options, values, colors, value, at) {
304
+ const labels = itemLabelsOf(options, value);
305
+ const { w, h } = at;
306
+ if (labels === null || w === null || h === null) {
307
+ return null;
308
+ }
309
+ // a size that is not a number, like one of 0, draws nothing
310
+ const drawn = w > 0 && h > 0 && at.radius > 0;
311
+ if (!drawn) {
312
+ return null;
313
+ }
314
+ const shown = values.map((v, k) => Number.isFinite(v) && v > 0 && colors[k] !== undefined);
315
+ const total = values.reduce((sum, v, k) => sum + (shown[k] ? v : 0), 0);
316
+ const size = Number(options.cy_itemLabelFontSize ?? ITEM_LABEL_FONT_SIZE);
317
+ const texts = [];
318
+ let from = at.start;
319
+ values.forEach((v, k) => {
320
+ if (!shown[k]) {
321
+ return;
322
+ }
323
+ const sweep = (360 * v) / total;
324
+ const mid = ((from + sweep / 2) * Math.PI) / 180;
325
+ from += sweep;
326
+ const text = labels[k] ?? "";
327
+ if (text === "") {
328
+ return;
329
+ }
330
+ // counter-clockwise from 3 o'clock, y up in the node's frame
331
+ const x = at.dx + ITEM_LABEL_RADIUS * at.radius * Math.cos(mid);
332
+ const y = -at.dy + ITEM_LABEL_RADIUS * at.radius * Math.sin(mid);
333
+ texts.push([
334
+ num6(x / (w / 2)),
335
+ num6(y / (h / 2)),
336
+ text,
337
+ {
338
+ size: num6((Number.isFinite(size) && size > 0 ? size : ITEM_LABEL_FONT_SIZE) / h),
339
+ color: CHART_LABEL_COLOR,
340
+ },
341
+ ]);
342
+ });
343
+ return texts.length === 0 ? null : JSON.stringify(texts);
344
+ }
345
+ /** How many of the file's lengths one of Cytoscape's chart units is: it draws a chart at twice the node's scale. */
346
+ const CHART_UNIT = 0.5;
347
+ /**
348
+ * How far in from the disc a pie would fill Cytoscape draws a chart's plot, in the file's lengths, measured from its
349
+ * SVG export of the specimen sheets (60 nodes): the chart's own box is 0.9 of the node less 0.9, its plot 1 less
350
+ * again, a heat map's 2 less.
351
+ */
352
+ const CHART_INSET = 0.9;
353
+ const PLOT_INSET = 1;
354
+ const HEAT_MAP_INSET = 2;
355
+ /** The default outline Cytoscape draws round each bar and box, in chart units: JFreeChart's dark gray, a quarter wide. */
356
+ const BAR_OUTLINE = { color: "#404040", width: 0.25 };
357
+ /** How much of the category side JFreeChart leaves at each end of a bar and a box chart, and of a line chart. */
358
+ const BAR_MARGIN = 0.025;
359
+ const LINE_MARGIN = -0.0125;
360
+ /** The share of its range JFreeChart adds above a line chart's, and above an automatic range's top. */
361
+ const RANGE_HEADROOM = 0.1;
362
+ /**
363
+ * A color between two `#rrggbb` colors, each channel rounded, as Cytoscape interpolates a heat map's.
364
+ * @param a - the color at 0
365
+ * @param b - the color at 1
366
+ * @param t - how far, 0..1
367
+ * @returns the color
368
+ */
369
+ function mix(a, b, t) {
370
+ const rgb = (c) => [1, 3, 5].map((k) => Number.parseInt(c.slice(k, k + 2), 16));
371
+ const [x, y] = [rgb(a), rgb(b)];
372
+ if ([...x, ...y].some((v) => !Number.isFinite(v))) {
373
+ return a;
374
+ }
375
+ const u = Math.max(0, Math.min(1, t));
376
+ return `#${x
377
+ .map((v, k) => Math.round(v + (y[k] - v) * u)
378
+ .toString(16)
379
+ .padStart(2, "0"))
380
+ .join("")}`;
381
+ }
382
+ /**
383
+ * A value's color on Cytoscape's three-color scale (`[up, zero, down]`): from the zero color toward the up color as
384
+ * the value nears the top of the range, toward the down color as it nears the bottom (`cy-heat-map`: 5 of 0..10
385
+ * half way from #F7F7F7 to #2166AC).
386
+ * @param colors - the three colors
387
+ * @param v - the value
388
+ * @param range - the range
389
+ * @returns the color
390
+ */
391
+ function scaleColor(colors, v, range) {
392
+ const [up, zero, down] = [colors[0], colors[1] ?? colors[0], colors[2] ?? colors[0]];
393
+ if (v >= 0) {
394
+ return mix(zero, up, range[1] > 0 ? v / range[1] : 0);
395
+ }
396
+ return mix(zero, down, range[0] < 0 ? v / range[0] : 0);
397
+ }
398
+ /**
399
+ * The quartiles, median and whiskers JFreeChart draws a box chart's values as (`BoxAndWhiskerCalculator`): the
400
+ * quartiles are the medians of each half, the middle value in both halves of an odd count; each whisker reaches the
401
+ * furthest value within 1.5 times the quartiles' spread.
402
+ * @param values - the values
403
+ * @returns low whisker, lower quartile, median, upper quartile, high whisker
404
+ */
405
+ function boxStats(values) {
406
+ const v = [...values].sort((a, b) => a - b);
407
+ const median = (list) => {
408
+ const m = list.length / 2;
409
+ return list.length % 2 === 1 ? list[Math.floor(m)] : (list[m - 1] + list[m]) / 2;
410
+ };
411
+ const half = Math.ceil(v.length / 2);
412
+ const [q1, q3] = [median(v.slice(0, half)), median(v.slice(v.length - half))];
413
+ const reach = 1.5 * (q3 - q1);
414
+ const inside = v.filter((x) => x >= q1 - reach && x <= q3 + reach);
415
+ // never empty: the middle values lie between the quartiles
416
+ return [inside[0], q1, median(v), q3, inside.at(-1) ?? q3];
417
+ }
418
+ /**
419
+ * How large a chart's plot is drawn: inside the disc a pie fills, as a share of the node.
420
+ * @param kind - the chart's class
421
+ * @param box - the pie's width and the node's shorter side, or null when the node's size is unknown
422
+ * @returns `chartSize`, or nothing when the node's size is unknown
423
+ */
424
+ function plotSize(kind, box) {
425
+ const sized = box !== null && box.side > 0;
426
+ if (!sized) {
427
+ return {};
428
+ }
429
+ // ponytail: the insets are measured on 60 nodes only; whether they scale with the node is not known
430
+ const inset = CHART_INSET + (kind === "HeatMapChart" ? HEAT_MAP_INSET : PLOT_INSET);
431
+ return { chartSize: num6(Math.max(0, box.disc - inset) / box.side) };
432
+ }
433
+ /**
434
+ * The outline Cytoscape draws round each bar and box.
435
+ * @param options - the chart's options
436
+ * @returns `chartBorderColor` and `chartBorderWidth`
437
+ */
438
+ function chartOutline(options) {
439
+ const color = typeof options.cy_borderColor === "string" ? options.cy_borderColor : BAR_OUTLINE.color;
440
+ return {
441
+ chartBorderColor: color.toLowerCase(),
442
+ chartBorderWidth: num6(CHART_UNIT * (Number(options.cy_borderWidth ?? BAR_OUTLINE.width) || 0)),
443
+ };
444
+ }
445
+ /**
446
+ * A bar chart's own properties: grouped, stacked, up and down (the first color up, the last down) or heat strips
447
+ * (each bar colored on the three-color scale).
448
+ * @param options - its options
449
+ * @param finite - the node's values that are numbers
450
+ * @param colors - its colors
451
+ * @param range - its range
452
+ * @param horizontal - whether its orientation is horizontal
453
+ * @returns the properties
454
+ */
455
+ function barChart(options, finite, colors, range, horizontal) {
456
+ const type = typeof options.cy_type === "string" ? options.cy_type : "GROUPED";
457
+ const stacked = type === "STACKED";
458
+ return {
459
+ chartKind: stacked ? "stacked-bar" : "bar",
460
+ chartValues: finite.join(" "),
461
+ chartColors: finite.map((v, k) => barColor(type, colors, v, k, range)).join(" "),
462
+ chartMin: range[0],
463
+ chartMax: range[1],
464
+ // Cytoscape lays a stacked bar's values across the node when its orientation says up
465
+ chartHorizontal: stacked ? !horizontal : horizontal,
466
+ chartMargin: BAR_MARGIN,
467
+ chartGap: num6(Math.max(0, Math.min(1, Number(options.cy_separation ?? 0) || 0))),
468
+ };
469
+ }
470
+ /**
471
+ * One bar's color.
472
+ * @param type - the bar chart's type
473
+ * @param colors - its colors
474
+ * @param v - the bar's value
475
+ * @param k - the bar's place
476
+ * @param range - the chart's range
477
+ * @returns the color
478
+ */
479
+ function barColor(type, colors, v, k, range) {
480
+ if (type === "HEAT_STRIPS") {
481
+ return scaleColor(colors, v, range);
482
+ }
483
+ if (type === "UP_DOWN") {
484
+ return colors[v >= 0 ? 0 : colors.length - 1].toLowerCase();
485
+ }
486
+ return colors[Math.min(k, colors.length - 1)].toLowerCase();
487
+ }
488
+ /**
489
+ * A bar, line, box or heat map chart as the neutral `chart*` properties, as Cytoscape 3.10.5 draws it (measured from
490
+ * its own SVG export of the specimen sheets: JFreeChart plots in a square box inset from the disc a pie fills).
491
+ * @param kind - the chart's class
492
+ * @param options - its options
493
+ * @param values - the node's values for its data columns
494
+ * @param colors - its colors
495
+ * @param box - how far across a pie would be drawn on the node and the node's shorter side, in the file's lengths;
496
+ * null when the node's size is unknown
497
+ * @param box.disc - the pie's width
498
+ * @param box.side - the node's shorter side
499
+ * @returns the properties to set
500
+ */
501
+ function plotChart(kind, options, values, colors, box) {
502
+ const finite = values.filter((v) => Number.isFinite(v));
503
+ if (finite.length === 0 || colors.length === 0) {
504
+ // ponytail: a chart colored by a named scheme (cy_colorScheme) without its colors is not drawn
505
+ return {};
506
+ }
507
+ const given = Array.isArray(options.cy_range) ? options.cy_range.map(Number) : [];
508
+ const global = options.cy_globalRange !== false && given.length === 2 && given.every((v) => Number.isFinite(v));
509
+ // an automatic range holds zero and the values, with headroom above
510
+ const auto = [Math.min(0, ...finite), Math.max(0, ...finite)];
511
+ auto[1] += RANGE_HEADROOM * (auto[1] - auto[0]);
512
+ const range = global ? [given[0], given[1]] : auto;
513
+ const horizontal = options.cy_orientation === "HORIZONTAL";
514
+ const out = plotSize(kind, box);
515
+ const outline = chartOutline(options);
516
+ switch (kind) {
517
+ case "BarChart":
518
+ Object.assign(out, outline, barChart(options, finite, colors, range, horizontal));
519
+ break;
520
+ case "LineChart":
521
+ // drawn up the node whatever its orientation, with headroom above its range
522
+ Object.assign(out, {
523
+ chartKind: "line",
524
+ chartValues: finite.join(" "),
525
+ chartColors: colors[0].toLowerCase(),
526
+ chartMin: range[0],
527
+ chartMax: num6(range[1] + (global ? RANGE_HEADROOM * (range[1] - range[0]) : 0)),
528
+ chartMargin: LINE_MARGIN,
529
+ chartLineWidth: num6(CHART_UNIT * (Number(options.cy_lineWidth ?? 1) || 0)),
530
+ });
531
+ break;
532
+ case "BoxChart":
533
+ Object.assign(out, outline, {
534
+ chartKind: "box",
535
+ chartValues: boxStats(finite).map(num6).join(" "),
536
+ chartColors: `${colors[0].toLowerCase()} #000000`,
537
+ chartMin: range[0],
538
+ chartMax: range[1],
539
+ chartHorizontal: horizontal,
540
+ chartMargin: BAR_MARGIN,
541
+ chartLineWidth: num6(CHART_UNIT * BAR_OUTLINE.width),
542
+ });
543
+ break;
544
+ case "HeatMapChart": {
545
+ // one cell per value, top to bottom; laid left to right, the last value first
546
+ const cells = horizontal ? [...finite].reverse() : finite;
547
+ Object.assign(out, {
548
+ chartKind: "cells",
549
+ chartValues: cells.join(" "),
550
+ chartColors: cells.map((v) => scaleColor(colors, v, range)).join(" "),
551
+ chartHorizontal: !horizontal,
552
+ });
553
+ break;
554
+ }
555
+ default:
556
+ break;
557
+ }
558
+ return out;
559
+ }
560
+ //# sourceMappingURL=charts.js.map
@@ -0,0 +1 @@
1
+ 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