@graphty/graph-io 0.3.47 → 0.3.49

package/dist/chunks/{importer-yh_aBCU6.js → importer-Vn5QvmmJ.js}

@@ -1,10 +1,12 @@
 import { INVALID_INDEX, GraphFormatError } from "@graphty/graph-format";
-import { u as uniqueColumnName, d as declareResolved, D as DictHeuristic, I as IdCoercer, l as DirectionResolver, h as throwIfAborted, s as parseWeightText, j as reportSinkOptions, i as reportUnusedOptions, f as chooseGraph, k as graphChosen, g as resolveImportOptions, t as textChunks } from "./export-BvqAXCKh.js";
-import { p as plural, a as agree, Z as ImportReportBuilder, aS as elementCount } from "./format-BpQBx8MZ.js";
-import { l as localName, a as escapeXmlText, i as isWhitespace, e as escapeXmlAttribute, t as tokenizeXml, b as xmlDeclaredEncoding, c as XmlSyntaxError, d as XmlNestingError } from "./escape-CgzxiYPg.js";
-import { X as XGMML_ISSUE, h as XGMML_NAMESPACE, g as XLINK_NAMESPACE, p as CYTOSCAPE_ORIGIN_NAMESPACE, F as FORMAT, L as LABEL_COLUMN, P as POSITION_COLUMN, Z as Z_COLUMN, G as GRAPHICS_COLUMN, k as PARENT_COLUMN, l as PARENTS_COLUMN, S as SUBGRAPH_COLUMN, N as NESTED_NETWORK_COLUMN, m as NETWORK_POINTER_COLUMN, n as NETWORKS_COLUMN, E as EDGE_ID_COLUMN, o as XGMML_ORIGIN_NAMESPACE, I as INTERACTION_COLUMN, M as META_KEY, y as readXgmmlFileStyles, z as MIME_TYPES, A as EXTENSIONS } from "./styles-BQnsga7p.js";
-import { f as flipY } from "./convert-BcQ8_jMo.js";
-import { p as parseTextCell, i as inferTextDtype } from "./text-CzJNFOS9.js";
+import { b as throwIfAborted, t as textChunks } from "./input-CAxt_aV-.js";
+import { u as uniqueColumnName, i as declareResolved, D as DictHeuristic, I as IdCoercer, p as parseWeightText, f as reportSinkOptions, d as reportUnusedOptions, g as chooseGraph, h as graphChosen, b as resolveImportOptions } from "./export-Cha4dRFz.js";
+import { p as plural, a as agree, K as ImportReportBuilder, am as elementCount } from "./report-CwMfYa9J.js";
+import { l as localName, a as escapeXmlText, i as isWhitespace, e as escapeXmlAttribute, t as tokenizeXml, b as xmlDeclaredEncoding, c as XmlSyntaxError, d as XmlNestingError } from "./escape-CuCIzNMB.js";
+import { X as XGMML_ISSUE, j as XGMML_NAMESPACE, h as XLINK_NAMESPACE, r as CYTOSCAPE_ORIGIN_NAMESPACE, F as FORMAT, L as LABEL_COLUMN, P as POSITION_COLUMN, Z as Z_COLUMN, G as GRAPHICS_COLUMN, m as PARENT_COLUMN, n as PARENTS_COLUMN, S as SUBGRAPH_COLUMN, N as NESTED_NETWORK_COLUMN, o as NETWORK_POINTER_COLUMN, p as NETWORKS_COLUMN, E as EDGE_ID_COLUMN, q as XGMML_ORIGIN_NAMESPACE, I as INTERACTION_COLUMN, M as META_KEY, y as readXgmmlFileStyles, z as MIME_TYPES, A as EXTENSIONS } from "./styles-CCs214_3.js";
+import { D as DirectionResolver } from "./format-BXiAb-1h.js";
+import { f as flipY } from "./convert-Ct2zelbQ.js";
+import { p as parseTextCell, i as inferTextDtype } from "./text-ystE2bYi.js";
 const NODE_READ = /* @__PURE__ */ new Set(["id", "label", "name", "xlink:href", "cy:nodeId"]);
 const EDGE_READ = /* @__PURE__ */ new Set([
   "id",
@@ -1720,7 +1722,7 @@ class XgmmlEmitter {
     }
     const containment = new Containment(this);
     containment.resolve(this.rowList, this.groupTest());
-    this.writeNodeExtras(graph);
+    this.writeNodeExtras(graph, (index) => containment.parentsOf(index));
     this.addEdges(members.edges, header);
     this.finishAliases();
     this.writeGraph(graph);
@@ -2051,8 +2053,9 @@ class XgmmlEmitter {
    * Write the per-node values: label, attributes, XML attributes, graphics, positions, nested
    * network pointers and subgraph memberships.
    * @param graph - the subnetwork, or null
+   * @param parentsOf - each node's group nodes, by node index
    */
-  writeNodeExtras(graph) {
+  writeNodeExtras(graph, parentsOf) {
     const labels = [];
     const positions = new Positions(this, this.dialect.cytoscape ? this.settings.zAs : "position");
     const graphics = new JsonColumn(this, "node", GRAPHICS_COLUMN, XGMML_ORIGIN_NAMESPACE, "graphics");
@@ -2076,7 +2079,7 @@ class XgmmlEmitter {
       this.checkAbort();
     }
     this.writeLabels("node", labels, (row) => this.rowList[row].index);
-    positions.write();
+    positions.write(parentsOf);
     pointers.write();
     if (graph === null) {
       this.writeNetworks();
@@ -2606,6 +2609,7 @@ class Positions {
     this.emitter = emitter;
     this.zAs = zAs;
     this.values = /* @__PURE__ */ new Map();
+    this.locations = /* @__PURE__ */ new Map();
     this.zValues = /* @__PURE__ */ new Map();
     this.hasZ = false;
   }
@@ -2615,6 +2619,10 @@ class Positions {
    * @param record - the record
    */
   add(row, record) {
+    const locations = row.index < 0 ? null : groupLocations([...record.atts, ...record.nested.flatMap((g) => g.atts)]);
+    if (locations !== null) {
+      this.locations.set(row.index, locations);
+    }
     if (row.index < 0 || record.x === null && record.y === null && record.z === null) {
       return;
     }
@@ -2654,8 +2662,31 @@ class Positions {
     }
     return n;
   }
-  /** Declare and write the position and z columns. */
-  write() {
+  /**
+   * Places the members of a collapsed Cytoscape group, which the file stores with no coordinates of their own, where
+   * Cytoscape puts them when the group is expanded: the group's stored center in that group network plus the
+   * member's stored offset (`__xLocation`, `__yLocation`, per `__groupNetworks.SUID`).
+   * @param parentsOf - each node's group nodes, by node index
+   */
+  followGroups(parentsOf) {
+    for (const [index, own] of this.locations) {
+      if (this.values.has(index)) {
+        continue;
+      }
+      const at = parentsOf(index).flatMap(
+        (p) => [...own].map(([network, [dx, dy]]) => ({ center: this.locations.get(p)?.get(network), dx, dy }))
+      ).find((c) => c.center !== void 0);
+      if (at?.center !== void 0) {
+        this.values.set(index, [at.center[0] + at.dx, flipY(at.center[1] + at.dy), 0]);
+      }
+    }
+  }
+  /**
+   * Declare and write the position and z columns.
+   * @param parentsOf - each node's group nodes, by node index
+   */
+  write(parentsOf) {
+    this.followGroups(parentsOf);
     const sink = this.emitter.target;
     if (this.values.size > 0) {
       const handle = this.emitter.declare("node", {
@@ -2694,6 +2725,21 @@ class Positions {
     }
   }
 }
+function groupLocations(atts) {
+  const list = (name) => atts.find((a) => a.name === name)?.children.map((c) => c.value) ?? [];
+  const networks = list("__groupNetworks.SUID");
+  const xs = list("__xLocation");
+  const ys = list("__yLocation");
+  const out = /* @__PURE__ */ new Map();
+  networks.forEach((network, i) => {
+    const x = Number(xs[i] ?? Number.NaN);
+    const y = Number(ys[i] ?? Number.NaN);
+    if (network !== null && Number.isFinite(x) && Number.isFinite(y)) {
+      out.set(network, [x, y]);
+    }
+  });
+  return out.size > 0 ? out : null;
+}
 class Pointers {
   /**
    * Create the collector.
@@ -2884,6 +2930,14 @@ class Containment {
     }
     return false;
   }
+  /**
+   * A node's group nodes.
+   * @param index - the node's index
+   * @returns the group nodes' indices
+   */
+  parentsOf(index) {
+    return this.parents.get(index) ?? [];
+  }
   /** Declare and write the parent (or parents) and subgraph columns. */
   write() {
     const sink = this.emitter.target;
@@ -3171,4 +3225,4 @@ export {
   resolveSettings as r,
   xgmmlImporter as x
 };
-//# sourceMappingURL=importer-yh_aBCU6.js.map
+//# sourceMappingURL=importer-Vn5QvmmJ.js.map