@erosolaraijs/cure 2.3.1 → 2.5.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +7 -0
- package/dist/bin/cure.js +114 -1
- package/dist/bin/cure.js.map +1 -1
- package/dist/capabilities/clinicalTrialMatchingModule.d.ts +150 -0
- package/dist/capabilities/clinicalTrialMatchingModule.d.ts.map +1 -0
- package/dist/capabilities/clinicalTrialMatchingModule.js +436 -0
- package/dist/capabilities/clinicalTrialMatchingModule.js.map +1 -0
- package/dist/capabilities/emergencyOncology.d.ts +97 -0
- package/dist/capabilities/emergencyOncology.d.ts.map +1 -0
- package/dist/capabilities/emergencyOncology.js +1824 -0
- package/dist/capabilities/emergencyOncology.js.map +1 -0
- package/dist/capabilities/index.d.ts +10 -0
- package/dist/capabilities/index.d.ts.map +1 -1
- package/dist/capabilities/index.js +20 -0
- package/dist/capabilities/index.js.map +1 -1
- package/dist/capabilities/multimodalOncologyModule.d.ts +149 -0
- package/dist/capabilities/multimodalOncologyModule.d.ts.map +1 -0
- package/dist/capabilities/multimodalOncologyModule.js +701 -0
- package/dist/capabilities/multimodalOncologyModule.js.map +1 -0
- package/dist/capabilities/palliativeCareModule.d.ts +216 -0
- package/dist/capabilities/palliativeCareModule.d.ts.map +1 -0
- package/dist/capabilities/palliativeCareModule.js +1160 -0
- package/dist/capabilities/palliativeCareModule.js.map +1 -0
- package/dist/capabilities/precisionMedicineModule.d.ts +151 -0
- package/dist/capabilities/precisionMedicineModule.d.ts.map +1 -0
- package/dist/capabilities/precisionMedicineModule.js +758 -0
- package/dist/capabilities/precisionMedicineModule.js.map +1 -0
- package/dist/capabilities/specialPopulationsModule.d.ts +126 -0
- package/dist/capabilities/specialPopulationsModule.d.ts.map +1 -0
- package/dist/capabilities/specialPopulationsModule.js +574 -0
- package/dist/capabilities/specialPopulationsModule.js.map +1 -0
- package/dist/capabilities/survivorshipManagement.d.ts +178 -0
- package/dist/capabilities/survivorshipManagement.d.ts.map +1 -0
- package/dist/capabilities/survivorshipManagement.js +983 -0
- package/dist/capabilities/survivorshipManagement.js.map +1 -0
- package/dist/capabilities/treatmentSequencing.d.ts +140 -0
- package/dist/capabilities/treatmentSequencing.d.ts.map +1 -0
- package/dist/capabilities/treatmentSequencing.js +1689 -0
- package/dist/capabilities/treatmentSequencing.js.map +1 -0
- package/dist/capabilities/universalHealthFramework.d.ts +108 -0
- package/dist/capabilities/universalHealthFramework.d.ts.map +1 -0
- package/dist/capabilities/universalHealthFramework.js +615 -0
- package/dist/capabilities/universalHealthFramework.js.map +1 -0
- package/dist/compliance/hipaa.d.ts.map +1 -1
- package/dist/compliance/hipaa.js +7 -16
- package/dist/compliance/hipaa.js.map +1 -1
- package/dist/tools/index.d.ts +31 -0
- package/dist/tools/index.d.ts.map +1 -0
- package/dist/tools/index.js +3075 -0
- package/dist/tools/index.js.map +1 -0
- package/package.json +3 -2
- package/src/bin/cure.ts +130 -1
- package/src/capabilities/clinicalTrialMatchingModule.ts +600 -0
- package/src/capabilities/emergencyOncology.ts +1945 -0
- package/src/capabilities/index.ts +181 -0
- package/src/capabilities/multimodalOncologyModule.ts +873 -0
- package/src/capabilities/palliativeCareModule.ts +1438 -0
- package/src/capabilities/precisionMedicineModule.ts +952 -0
- package/src/capabilities/specialPopulationsModule.ts +711 -0
- package/src/capabilities/survivorshipManagement.ts +1213 -0
- package/src/capabilities/treatmentSequencing.ts +1878 -0
- package/src/capabilities/universalHealthFramework.ts +739 -0
- package/src/compliance/hipaa.ts +7 -15
- package/src/tools/index.ts +3501 -0
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/**
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* Precision Medicine and Genomic Interpretation Module
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*
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* ╔═══════════════════════════════════════════════════════════════════════════════╗
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* ║ PRECISION ONCOLOGY - BIOMARKER-DRIVEN TREATMENT SELECTION ║
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* ╠═══════════════════════════════════════════════════════════════════════════════╣
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* ║ This module provides: ║
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* ║ - Comprehensive genomic interpretation ║
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* ║ - Actionable mutation databases ║
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* ║ - Pharmacogenomics for toxicity prediction ║
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* ║ - Tumor microenvironment analysis ║
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* ║ - ctDNA/liquid biopsy interpretation ║
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* ║ - Variant actionability scoring ║
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* ╚═══════════════════════════════════════════════════════════════════════════════╝
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*/
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export interface GenomicAlteration {
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gene: string;
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alteration: string;
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alterationType: AlterationType;
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frequency: string;
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cancerTypes: string[];
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actionability: ActionabilityLevel;
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therapies: TargetedTherapy[];
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clinicalTrials: string[];
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resistance: ResistanceMutation[];
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prognosticValue: PrognosticValue;
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}
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export type AlterationType = 'Missense Mutation' | 'Nonsense Mutation' | 'Frameshift' | 'In-frame Deletion' | 'In-frame Insertion' | 'Splice Site' | 'Amplification' | 'Deletion' | 'Fusion' | 'Rearrangement' | 'Copy Number Gain' | 'Copy Number Loss';
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export interface ActionabilityLevel {
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level: 'Level 1' | 'Level 2' | 'Level 3A' | 'Level 3B' | 'Level 4' | 'Not Actionable';
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description: string;
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source: string;
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}
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export interface TargetedTherapy {
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drug: string;
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class: string;
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approvalStatus: 'FDA-Approved' | 'EMA-Approved' | 'Off-Label' | 'Clinical Trial';
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indication: string;
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responseRate: string;
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medianPFS: string;
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keyTrial: string;
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}
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export interface ResistanceMutation {
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mutation: string;
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frequency: string;
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overcomingStrategy: string[];
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}
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export interface PrognosticValue {
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impact: 'Favorable' | 'Unfavorable' | 'Neutral' | 'Context-Dependent';
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description: string;
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}
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export declare const ACTIONABLE_GENOMIC_DATABASE: GenomicAlteration[];
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export interface PharmacogenomicMarker {
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gene: string;
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variant: string;
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affectedDrugs: DrugPGx[];
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testingRecommendation: 'Required' | 'Strongly Recommended' | 'Consider' | 'Optional';
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guidelineSource: string;
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}
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export interface DrugPGx {
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drug: string;
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effect: string;
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recommendation: string;
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doseAdjustment?: string;
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}
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export declare const PHARMACOGENOMIC_MARKERS: PharmacogenomicMarker[];
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export interface TumorMicroenvironment {
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immuneInfiltration: ImmuneInfiltration;
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stromalPhenotype: StromalPhenotype;
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vascularization: VascularStatus;
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immunePhenotype: 'Inflamed' | 'Excluded' | 'Desert';
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therapeuticImplications: TherapeuticImplication[];
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}
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export interface ImmuneInfiltration {
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cd8TILs: 'High' | 'Intermediate' | 'Low' | 'Absent';
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cd4TILs: 'High' | 'Intermediate' | 'Low';
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tregs: 'High' | 'Low';
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myeloidCells: MDSCStatus;
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nkCells: 'Present' | 'Absent';
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bCells: 'Present' | 'Absent' | 'TLS Present';
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}
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export interface MDSCStatus {
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mdscLevel: 'High' | 'Low';
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m1m2Ratio: 'M1-predominant' | 'M2-predominant' | 'Mixed';
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}
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export interface StromalPhenotype {
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cafPresence: 'High' | 'Low';
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ecmDensity: 'Dense' | 'Moderate' | 'Loose';
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fibrosis: boolean;
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}
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export interface VascularStatus {
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vascularDensity: 'High' | 'Moderate' | 'Low';
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vascularNormalization: boolean;
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hypoxia: boolean;
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}
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export interface TherapeuticImplication {
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finding: string;
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implication: string;
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recommendation: string;
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}
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export declare const TME_THERAPEUTIC_IMPLICATIONS: Record<string, TherapeuticImplication[]>;
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export interface LiquidBiopsyResult {
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sampleDate: string;
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ctdnaFraction: number;
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alterationsDetected: CtDNAAlteration[];
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clinicalInterpretation: CtDNAInterpretation;
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}
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export interface CtDNAAlteration {
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gene: string;
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alteration: string;
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vaf: number;
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clinicalSignificance: 'Actionable' | 'Resistance' | 'Prognostic' | 'VUS' | 'Benign';
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}
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export interface CtDNAInterpretation {
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summary: string;
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actionableFindings: string[];
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resistanceMutations: string[];
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monitoringRecommendation: string;
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tissueConfirmationNeeded: boolean;
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}
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export declare function interpretCtDNA(result: LiquidBiopsyResult): CtDNAInterpretation;
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export declare class PrecisionMedicineEngine {
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getActionableAlterations(gene: string): GenomicAlteration[];
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getAlterationByType(alteration: string): GenomicAlteration | undefined;
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getTherapiesForAlteration(gene: string, alteration: string): TargetedTherapy[];
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getPharmacogenomicRecommendation(drug: string): PharmacogenomicMarker | undefined;
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assessActionability(alterations: {
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gene: string;
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alteration: string;
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}[]): {
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|
131
|
+
level1: GenomicAlteration[];
|
|
132
|
+
level2: GenomicAlteration[];
|
|
133
|
+
level3: GenomicAlteration[];
|
|
134
|
+
notActionable: string[];
|
|
135
|
+
};
|
|
136
|
+
getTMEImplications(phenotype: TumorMicroenvironment['immunePhenotype']): TherapeuticImplication[];
|
|
137
|
+
interpretLiquidBiopsy(result: LiquidBiopsyResult): CtDNAInterpretation;
|
|
138
|
+
generatePrecisionReport(patientId: string, genomicProfile: {
|
|
139
|
+
gene: string;
|
|
140
|
+
alteration: string;
|
|
141
|
+
type: string;
|
|
142
|
+
}[], pharmacogenomics: string[], tmeIfAvailable?: TumorMicroenvironment): {
|
|
143
|
+
actionableTargets: GenomicAlteration[];
|
|
144
|
+
pgxRecommendations: PharmacogenomicMarker[];
|
|
145
|
+
tmeImplications: TherapeuticImplication[];
|
|
146
|
+
clinicalTrialTargets: string[];
|
|
147
|
+
summary: string;
|
|
148
|
+
};
|
|
149
|
+
}
|
|
150
|
+
export declare const precisionMedicineEngine: PrecisionMedicineEngine;
|
|
151
|
+
//# sourceMappingURL=precisionMedicineModule.d.ts.map
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|
@@ -0,0 +1 @@
|
|
|
1
|
+
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