@datagrok/eda 1.4.3 → 1.4.4

package/dist/src_workers_softmax-worker_ts.js

@@ -0,0 +1,154 @@
+var eda;
+/******/ (() => { // webpackBootstrap
+/******/ 	"use strict";
+/******/ 	var __webpack_modules__ = ({
+
+/***/ "./src/workers/softmax-worker.ts":
+/*!***************************************!*\
+  !*** ./src/workers/softmax-worker.ts ***!
+  \***************************************/
+/***/ (function() {
+
+
+// Worker for softmax training
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+onmessage = function (evt) {
+    return __awaiter(this, void 0, void 0, function* () {
+        const X = evt.data.features;
+        const transposedX = evt.data.transposed;
+        const Y = evt.data.oneHot;
+        const classesWeights = evt.data.classesWeights;
+        const iterations = evt.data.iterations;
+        const rate = evt.data.rate;
+        const penalty = evt.data.penalty;
+        const tolerance = evt.data.tolerance;
+        const targetRaw = evt.data.targetRaw;
+        let loss = 0;
+        let lossPrev = 0;
+        const n = transposedX.length;
+        const m = X.length;
+        const c = classesWeights.length;
+        // 1. Init params
+        // Xavier initialization scale value
+        const xavierScale = 2 * Math.sqrt(6.0 / (c + n));
+        const params = new Array(c);
+        for (let i = 0; i < c; ++i) {
+            const current = new Float32Array(n + 1);
+            // initialize bias, b
+            current[n] = 0;
+            //Xavier initialization of weights, w
+            for (let j = 0; j < n; ++j)
+                current[j] = (Math.random() - 0.5) * xavierScale;
+            params[i] = current;
+        }
+        // 2. Fitting
+        // Routine
+        let xBuf;
+        let wBuf;
+        let zBuf;
+        let sum;
+        let sumExp;
+        let yTrue;
+        let yPred;
+        let dWbuf;
+        const Z = new Array(m);
+        for (let i = 0; i < m; ++i)
+            Z[i] = new Float32Array(c);
+        const dZ = new Array(c);
+        for (let i = 0; i < c; ++i)
+            dZ[i] = new Float32Array(m);
+        const dW = new Array(c);
+        for (let i = 0; i < c; ++i)
+            dW[i] = new Float32Array(n + 1);
+        // Fitting
+        for (let iter = 0; iter < iterations; ++iter) {
+            // 2.1) Forward propagation
+            for (let j = 0; j < m; ++j) {
+                xBuf = X[j];
+                zBuf = Z[j];
+                sum = 0;
+                sumExp = 0;
+                for (let i = 0; i < c; ++i) {
+                    wBuf = params[i];
+                    sum = wBuf[n];
+                    for (let k = 0; k < n; ++k)
+                        sum += wBuf[k] * xBuf[k];
+                    zBuf[i] = Math.exp(sum) * classesWeights[i];
+                    sumExp += zBuf[i];
+                }
+                for (let i = 0; i < c; ++i)
+                    zBuf[i] /= sumExp;
+            }
+            // 2.2) Loss
+            loss = 0;
+            for (let i = 0; i < m; ++i)
+                loss += -Math.log(Z[i][targetRaw[i]]);
+            loss /= m;
+            if (Math.abs(loss - lossPrev) < tolerance)
+                break;
+            lossPrev = loss;
+            // 2.3) Backward propagation
+            // 2.3.1) dZ
+            for (let j = 0; j < m; ++j) {
+                yPred = Z[j];
+                yTrue = Y[j];
+                for (let i = 0; i < c; ++i)
+                    dZ[i][j] = yPred[i] - yTrue[i];
+            }
+            // 2.3.2) dB
+            for (let i = 0; i < c; ++i) {
+                sum = 0;
+                zBuf = dZ[i];
+                for (let j = 0; j < m; ++j)
+                    sum += zBuf[j];
+                dW[i][n] = sum / m;
+            }
+            // 2.3.3) dW
+            for (let i = 0; i < c; ++i) {
+                zBuf = dZ[i];
+                wBuf = dW[i];
+                for (let j = 0; j < n; ++j) {
+                    xBuf = transposedX[j];
+                    sum = 0;
+                    for (let k = 0; k < m; ++k)
+                        sum += zBuf[k] * xBuf[k];
+                    wBuf[j] = sum / m;
+                }
+            }
+            // 2.4) Update weights
+            for (let i = 0; i < c; ++i) {
+                wBuf = params[i];
+                dWbuf = dW[i];
+                for (let j = 0; j < n; ++j)
+                    wBuf[j] = (1 - rate * penalty / m) * wBuf[j] - rate * dWbuf[j];
+                wBuf[n] -= rate * dWbuf[n];
+            }
+        } // for iter
+        postMessage({ 'params': params, 'loss': loss });
+    });
+};
+
+
+/***/ })
+
+/******/ 	});
+/************************************************************************/
+/******/ 	
+/******/ 	// startup
+/******/ 	// Load entry module and return exports
+/******/ 	// This entry module is referenced by other modules so it can't be inlined
+/******/ 	var __webpack_exports__ = {};
+/******/ 	__webpack_modules__["./src/workers/softmax-worker.ts"]();
+/******/ 	eda = __webpack_exports__;
+/******/ 	
+/******/ })()
+;
+//# sourceMappingURL=src_workers_softmax-worker_ts.js.map

package/dist/src_workers_softmax-worker_ts.js.map

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Worker for softmax training\n\nonmessage = async function(evt) {\n  const X = evt.data.features;\n  const transposedX = evt.data.transposed;\n  const Y = evt.data.oneHot;\n  const classesWeights = evt.data.classesWeights;\n  const iterations = evt.data.iterations;\n  const rate = evt.data.rate;\n  const penalty = evt.data.penalty;\n  const tolerance = evt.data.tolerance;\n  const targetRaw = evt.data.targetRaw;\n  let loss = 0;\n  let lossPrev = 0;\n\n  const n = transposedX.length;\n  const m = X.length;\n  const c = classesWeights.length;\n\n  // 1. Init params\n  // Xavier initialization scale value\n  const xavierScale = 2 * Math.sqrt(6.0 / (c + n));\n  const params = new Array<Float32Array>(c);\n  for (let i = 0; i < c; ++i) {\n    const current = new Float32Array(n + 1);\n\n    // initialize bias, b\n    current[n] = 0;\n\n    //Xavier initialization of weights, w\n    for (let j = 0; j < n; ++j)\n      current[j] = (Math.random() - 0.5) * xavierScale;\n\n    params[i] = current;\n  }\n\n  // 2. Fitting\n\n  // Routine\n  let xBuf: Float32Array;\n  let wBuf: Float32Array;\n  let zBuf: Float32Array;\n  let sum: number;\n  let sumExp: number;\n  let yTrue: Uint8Array;\n  let yPred: Float32Array;\n  let dWbuf: Float32Array;\n  const Z = new Array<Float32Array>(m);\n  for (let i = 0; i < m; ++i)\n    Z[i] = new Float32Array(c);\n  const dZ = new Array<Float32Array>(c);\n  for (let i = 0; i < c; ++i)\n    dZ[i] = new Float32Array(m);\n  const dW = new Array<Float32Array>(c);\n  for (let i = 0; i < c; ++i)\n    dW[i] = new Float32Array(n + 1);\n\n  // Fitting\n  for (let iter = 0; iter < iterations; ++iter) {\n    // 2.1) Forward propagation\n    for (let j = 0; j < m; ++j) {\n      xBuf = X[j];\n      zBuf = Z[j];\n      sum = 0;\n      sumExp = 0;\n\n      for (let i = 0; i < c; ++i) {\n        wBuf = params[i];\n        sum = wBuf[n];\n\n        for (let k = 0; k < n; ++k)\n          sum += wBuf[k] * xBuf[k];\n\n        zBuf[i] = Math.exp(sum) * classesWeights[i];\n        sumExp += zBuf[i];\n      }\n\n      for (let i = 0; i < c; ++i)\n        zBuf[i] /= sumExp;\n    }\n\n    // 2.2) Loss\n    loss = 0;\n\n    for (let i = 0; i < m; ++i)\n      loss += -Math.log(Z[i][targetRaw[i]]);\n\n    loss /= m;\n\n    if (Math.abs(loss - lossPrev) < tolerance)\n      break;\n\n    lossPrev = loss;\n\n    // 2.3) Backward propagation\n\n    // 2.3.1) dZ\n    for (let j = 0; j < m; ++j) {\n      yPred = Z[j];\n      yTrue = Y[j];\n\n      for (let i = 0; i < c; ++i)\n        dZ[i][j] = yPred[i] - yTrue[i];\n    }\n\n    // 2.3.2) dB\n    for (let i = 0; i < c; ++i) {\n      sum = 0;\n      zBuf = dZ[i];\n\n      for (let j = 0; j < m; ++j)\n        sum += zBuf[j];\n\n      dW[i][n] = sum / m;\n    }\n\n    // 2.3.3) dW\n    for (let i = 0; i < c; ++i) {\n      zBuf = dZ[i];\n      wBuf = dW[i];\n\n      for (let j = 0; j < n; ++j) {\n        xBuf = transposedX[j];\n\n        sum = 0;\n        for (let k = 0; k < m; ++k)\n          sum += zBuf[k] * xBuf[k];\n\n        wBuf[j] = sum / m;\n      }\n    }\n\n    // 2.4) Update weights\n    for (let i = 0; i < c; ++i) {\n      wBuf = params[i];\n      dWbuf = dW[i];\n\n      for (let j = 0; j < n; ++j)\n        wBuf[j] = (1 - rate * penalty / m) * wBuf[j] - rate * dWbuf[j];\n\n      wBuf[n] -= rate * dWbuf[n];\n    }\n  } // for iter\n\n  postMessage({'params': params, 'loss': loss});\n};\n","","// startup\n// Load entry module and return exports\n// This entry module is referenced by other modules so it can't be inlined\nvar __webpack_exports__ = {};\n__webpack_modules__[\"./src/workers/softmax-worker.ts\"]();\n",""],"names":[],"sourceRoot":""}

package/dist/src_workers_tsne-worker_ts.js

@@ -0,0 +1,244 @@
+var eda;
+/******/ (() => { // webpackBootstrap
+/******/ 	"use strict";
+/******/ 	var __webpack_modules__ = ({
+
+/***/ "./src/workers/tsne-worker.ts":
+/*!************************************!*\
+  !*** ./src/workers/tsne-worker.ts ***!
+  \************************************/
+/***/ ((__unused_webpack_module, __webpack_exports__, __webpack_require__) => {
+
+__webpack_require__.r(__webpack_exports__);
+/* harmony import */ var _keckelt_tsne__WEBPACK_IMPORTED_MODULE_0__ = __webpack_require__(/*! @keckelt/tsne */ "./node_modules/@keckelt/tsne/lib/index.js");
+// Worker for the method t-SNE
+var __awaiter = (undefined && undefined.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+
+onmessage = function (evt) {
+    return __awaiter(this, void 0, void 0, function* () {
+        const tsne = new _keckelt_tsne__WEBPACK_IMPORTED_MODULE_0__.TSNE({
+            epsilon: evt.data.options.learningRate,
+            perplexity: evt.data.options.perplexity,
+            dim: evt.data.options.components,
+        });
+        tsne.initDataRaw(evt.data.data);
+        const iterCount = evt.data.options.iterations;
+        for (let i = 0; i < iterCount; ++i)
+            tsne.step();
+        postMessage({ 'embeddings': tsne.getSolution() });
+    });
+};
+
+
+/***/ })
+
+/******/ 	});
+/************************************************************************/
+/******/ 	// The module cache
+/******/ 	var __webpack_module_cache__ = {};
+/******/ 	
+/******/ 	// The require function
+/******/ 	function __webpack_require__(moduleId) {
+/******/ 		// Check if module is in cache
+/******/ 		var cachedModule = __webpack_module_cache__[moduleId];
+/******/ 		if (cachedModule !== undefined) {
+/******/ 			return cachedModule.exports;
+/******/ 		}
+/******/ 		// Create a new module (and put it into the cache)
+/******/ 		var module = __webpack_module_cache__[moduleId] = {
+/******/ 			// no module.id needed
+/******/ 			// no module.loaded needed
+/******/ 			exports: {}
+/******/ 		};
+/******/ 	
+/******/ 		// Execute the module function
+/******/ 		__webpack_modules__[moduleId](module, module.exports, __webpack_require__);
+/******/ 	
+/******/ 		// Return the exports of the module
+/******/ 		return module.exports;
+/******/ 	}
+/******/ 	
+/******/ 	// expose the modules object (__webpack_modules__)
+/******/ 	__webpack_require__.m = __webpack_modules__;
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