@datagrok/eda 1.4.3 → 1.4.4

package/dist/vendors-node_modules_datagrok-libraries_ml_src_distance-matrix_knn-threshold-worker_js.js

@@ -0,0 +1,286 @@
+var eda;
+/******/ (() => { // webpackBootstrap
+/******/ 	"use strict";
+/******/ 	var __webpack_modules__ = ({
+
+/***/ "./node_modules/@datagrok-libraries/ml/src/distance-matrix/knn-threshold-worker.js":
+/*!*****************************************************************************************!*\
+  !*** ./node_modules/@datagrok-libraries/ml/src/distance-matrix/knn-threshold-worker.js ***!
+  \*****************************************************************************************/
+/***/ ((__unused_webpack_module, __webpack_exports__, __webpack_require__) => {
+
+__webpack_require__.r(__webpack_exports__);
+/* harmony import */ var _utils__WEBPACK_IMPORTED_MODULE_0__ = __webpack_require__(/*! ./utils */ "./node_modules/@datagrok-libraries/ml/src/distance-matrix/utils.js");
+/* harmony import */ var _typed_metrics__WEBPACK_IMPORTED_MODULE_1__ = __webpack_require__(/*! ../typed-metrics */ "./node_modules/@datagrok-libraries/ml/src/typed-metrics/index.js");
+/* harmony import */ var _datagrok_libraries_utils_src_bit_array__WEBPACK_IMPORTED_MODULE_2__ = __webpack_require__(/*! @datagrok-libraries/utils/src/bit-array */ "./node_modules/@datagrok-libraries/utils/src/bit-array.js");
+
+
+
+onmessage = async (event) => {
+    const { values, startIdx, endIdx, fnNames, opts, threshold, weights, aggregationMethod } = event.data;
+    try {
+        const knnIndexes = new Array(values[0].length).fill(null).map(() => new Array(0));
+        const knnDistances = new Array(values[0].length).fill(null).map(() => new Array(0));
+        const aggregate = (0,_utils__WEBPACK_IMPORTED_MODULE_0__.getAggregationFunction)(aggregationMethod, weights);
+        const chunkSize = endIdx - startIdx;
+        values.forEach((v, colIdx) => {
+            if ((0,_typed_metrics__WEBPACK_IMPORTED_MODULE_1__.isBitArrayMetric)(fnNames[colIdx])) {
+                for (let i = 0; i < v.length; ++i) {
+                    if ((0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(v[i]))
+                        continue;
+                    values[colIdx][i] = new _datagrok_libraries_utils_src_bit_array__WEBPACK_IMPORTED_MODULE_2__["default"](values[colIdx][i]._data, values[colIdx][i]._length);
+                }
+            }
+        });
+        let cnt = 0;
+        const distanceFns = new Array(fnNames.length).fill(null).map((_, i) => new _typed_metrics__WEBPACK_IMPORTED_MODULE_1__.Measure(fnNames[i]).getMeasure(opts[i]));
+        const startRow = values[0].length - 2 - Math.floor(Math.sqrt(-8 * startIdx + 4 * values[0].length * (values[0].length - 1) - 7) / 2 - 0.5);
+        const startCol = startIdx - values[0].length * startRow + Math.floor((startRow + 1) * (startRow + 2) / 2);
+        let mi = startRow;
+        let mj = startCol;
+        while (cnt < chunkSize) {
+            //const value = seq1List[mi] && seq1List[mj] ? hamming(seq1List[mi], seq1List[mj]) : 0;
+            const distanceValues = distanceFns.map((fn, idx) => !(0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(values[idx][mi]) && !(0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(values[idx][mj]) ?
+                fn(values[idx][mi], values[idx][mj]) : 1);
+            // const value = !isNil(values[mi]) && !isNil(values[mj]) ?
+            //   distanceFn(values[mi], values[mj]) : 1;
+            const value = distanceValues.length === 1 ? distanceValues[0] : aggregate(distanceValues);
+            // insertSmaller(knnDistances[mi], knnIndexes[mi], value, mj);
+            // insertSmaller(knnDistances[mj], knnIndexes[mj], value, mi);
+            if (1 - value > threshold) {
+                knnDistances[mi].push(value);
+                knnIndexes[mi].push(mj);
+                knnDistances[mj].push(value);
+                knnIndexes[mj].push(mi);
+            }
+            cnt++;
+            mj++;
+            if (mj === values[0].length) {
+                mi++;
+                mj = mi + 1;
+            }
+        }
+        postMessage({ knnDistances, knnIndexes });
+    }
+    catch (e) {
+        postMessage({ error: e });
+    }
+};
+//# 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Array(values[0].length).fill(null).map(() => new Array(0));\n        const knnDistances = new Array(values[0].length).fill(null).map(() => new Array(0));\n        const aggregate = getAggregationFunction(aggregationMethod, weights);\n        const chunkSize = endIdx - startIdx;\n        values.forEach((v, colIdx) => {\n            if (isBitArrayMetric(fnNames[colIdx])) {\n                for (let i = 0; i < v.length; ++i) {\n                    if (isNil(v[i]))\n                        continue;\n                    values[colIdx][i] = new BitArray(values[colIdx][i]._data, values[colIdx][i]._length);\n                }\n            }\n        });\n        let cnt = 0;\n        const distanceFns = new Array(fnNames.length).fill(null).map((_, i) => new Measure(fnNames[i]).getMeasure(opts[i]));\n        const startRow = values[0].length - 2 - Math.floor(Math.sqrt(-8 * startIdx + 4 * values[0].length * (values[0].length - 1) - 7) / 2 - 0.5);\n        const startCol = startIdx - 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package/dist/vendors-node_modules_datagrok-libraries_ml_src_distance-matrix_knn-worker_js.js

@@ -0,0 +1,280 @@
+var eda;
+/******/ (() => { // webpackBootstrap
+/******/ 	"use strict";
+/******/ 	var __webpack_modules__ = ({
+
+/***/ "./node_modules/@datagrok-libraries/ml/src/distance-matrix/knn-worker.js":
+/*!*******************************************************************************!*\
+  !*** ./node_modules/@datagrok-libraries/ml/src/distance-matrix/knn-worker.js ***!
+  \*******************************************************************************/
+/***/ ((__unused_webpack_module, __webpack_exports__, __webpack_require__) => {
+
+__webpack_require__.r(__webpack_exports__);
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+/* harmony import */ var _datagrok_libraries_utils_src_bit_array__WEBPACK_IMPORTED_MODULE_2__ = __webpack_require__(/*! @datagrok-libraries/utils/src/bit-array */ "./node_modules/@datagrok-libraries/utils/src/bit-array.js");
+
+
+
+onmessage = async (event) => {
+    const { values, startIdx, endIdx, fnNames, opts, nNeighbours, weights, aggregationMethod } = event.data;
+    try {
+        const knnIndexes = new Array(values[0].length).fill(null).map(() => new Array(nNeighbours).fill(-1));
+        const knnDistances = new Array(values[0].length).fill(null).map(() => new Array(nNeighbours).fill(999999));
+        const aggregate = (0,_utils__WEBPACK_IMPORTED_MODULE_0__.getAggregationFunction)(aggregationMethod, weights);
+        const chunkSize = endIdx - startIdx;
+        values.forEach((v, colIdx) => {
+            if ((0,_typed_metrics__WEBPACK_IMPORTED_MODULE_1__.isBitArrayMetric)(fnNames[colIdx])) {
+                for (let i = 0; i < v.length; ++i) {
+                    if ((0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(v[i]))
+                        continue;
+                    values[colIdx][i] = new _datagrok_libraries_utils_src_bit_array__WEBPACK_IMPORTED_MODULE_2__["default"](values[colIdx][i]._data, values[colIdx][i]._length);
+                }
+            }
+        });
+        let cnt = 0;
+        const distanceFns = new Array(fnNames.length).fill(null).map((_, i) => new _typed_metrics__WEBPACK_IMPORTED_MODULE_1__.Measure(fnNames[i]).getMeasure(opts[i]));
+        const startRow = values[0].length - 2 - Math.floor(Math.sqrt(-8 * startIdx + 4 * values[0].length * (values[0].length - 1) - 7) / 2 - 0.5);
+        const startCol = startIdx - values[0].length * startRow + Math.floor((startRow + 1) * (startRow + 2) / 2);
+        let mi = startRow;
+        let mj = startCol;
+        while (cnt < chunkSize) {
+            //const value = seq1List[mi] && seq1List[mj] ? hamming(seq1List[mi], seq1List[mj]) : 0;
+            const distanceValues = distanceFns.map((fn, idx) => !(0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(values[idx][mi]) && !(0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(values[idx][mj]) ?
+                fn(values[idx][mi], values[idx][mj]) : 1);
+            // const value = !isNil(values[mi]) && !isNil(values[mj]) ?
+            //   distanceFn(values[mi], values[mj]) : 1;
+            const value = distanceValues.length === 1 ? distanceValues[0] : aggregate(distanceValues);
+            (0,_utils__WEBPACK_IMPORTED_MODULE_0__.insertSmaller)(knnDistances[mi], knnIndexes[mi], value, mj);
+            (0,_utils__WEBPACK_IMPORTED_MODULE_0__.insertSmaller)(knnDistances[mj], knnIndexes[mj], value, mi);
+            cnt++;
+            mj++;
+            if (mj === values[0].length) {
+                mi++;
+                mj = mi + 1;
+            }
+        }
+        postMessage({ knnDistances, knnIndexes });
+    }
+    catch (e) {
+        postMessage({ error: e });
+    }
+};
+//# 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
+
+/***/ })
+
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