@datagrok/eda 1.4.3 → 1.4.4

package/dist/node_modules_datagrok-libraries_ml_src_distance-matrix_single-value-knn-worker_js.js

@@ -0,0 +1,265 @@
+var eda;
+/******/ (() => { // webpackBootstrap
+/******/ 	"use strict";
+/******/ 	var __webpack_modules__ = ({
+
+/***/ "./node_modules/@datagrok-libraries/ml/src/distance-matrix/single-value-knn-worker.js":
+/*!********************************************************************************************!*\
+  !*** ./node_modules/@datagrok-libraries/ml/src/distance-matrix/single-value-knn-worker.js ***!
+  \********************************************************************************************/
+/***/ ((__unused_webpack_module, __webpack_exports__, __webpack_require__) => {
+
+__webpack_require__.r(__webpack_exports__);
+/* harmony import */ var _utils__WEBPACK_IMPORTED_MODULE_0__ = __webpack_require__(/*! ./utils */ "./node_modules/@datagrok-libraries/ml/src/distance-matrix/utils.js");
+/* harmony import */ var _typed_metrics__WEBPACK_IMPORTED_MODULE_1__ = __webpack_require__(/*! ../typed-metrics */ "./node_modules/@datagrok-libraries/ml/src/typed-metrics/index.js");
+/* harmony import */ var _datagrok_libraries_utils_src_bit_array__WEBPACK_IMPORTED_MODULE_2__ = __webpack_require__(/*! @datagrok-libraries/utils/src/bit-array */ "./node_modules/@datagrok-libraries/utils/src/bit-array.js");
+
+
+
+onmessage = async (event) => {
+    const { values, fnNames, opts, nNeighbours, weights, aggregationMethod, target, startIdx } = event.data;
+    try {
+        const knnIndexes = new Array(nNeighbours).fill(-1);
+        const knnDistances = new Array(nNeighbours).fill(999999);
+        const aggregate = (0,_utils__WEBPACK_IMPORTED_MODULE_0__.getAggregationFunction)(aggregationMethod, weights);
+        values.forEach((v, colIdx) => {
+            if ((0,_typed_metrics__WEBPACK_IMPORTED_MODULE_1__.isBitArrayMetric)(fnNames[colIdx])) {
+                for (let i = 0; i < v.length; ++i) {
+                    if ((0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(v[i]))
+                        continue;
+                    values[colIdx][i] = new _datagrok_libraries_utils_src_bit_array__WEBPACK_IMPORTED_MODULE_2__["default"](values[colIdx][i]._data, values[colIdx][i]._length);
+                }
+            }
+        });
+        let cnt = 0;
+        const distanceFns = new Array(fnNames.length).fill(null).map((_, i) => new _typed_metrics__WEBPACK_IMPORTED_MODULE_1__.Measure(fnNames[i]).getMeasure(opts[i]));
+        for (let i = 0; i < values[0].length; i++) {
+            const distanceValues = distanceFns.map((fn, idx) => !(0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(target[idx]) && !(0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(values[idx][i]) ?
+                fn(target[idx], values[idx][i]) : 1);
+            const value = distanceValues.length === 1 ? distanceValues[0] : aggregate(distanceValues);
+            (0,_utils__WEBPACK_IMPORTED_MODULE_0__.insertSmaller)(knnDistances, knnIndexes, value, i + startIdx);
+        }
+        postMessage({ knnDistances, knnIndexes });
+    }
+    catch (e) {
+        postMessage({ error: e });
+    }
+};
+//# 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+
+/***/ })
+
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+;
+//# sourceMappingURL=node_modules_datagrok-libraries_ml_src_distance-matrix_single-value-knn-worker_js.js.map

package/dist/node_modules_datagrok-libraries_ml_src_distance-matrix_single-value-knn-worker_js.js.map

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package/dist/node_modules_datagrok-libraries_ml_src_distance-matrix_sparse-matrix-worker_js.js

@@ -0,0 +1,287 @@
+var eda;
+/******/ (() => { // webpackBootstrap
+/******/ 	"use strict";
+/******/ 	var __webpack_modules__ = ({
+
+/***/ "./node_modules/@datagrok-libraries/ml/src/distance-matrix/sparse-matrix-worker.js":
+/*!*****************************************************************************************!*\
+  !*** ./node_modules/@datagrok-libraries/ml/src/distance-matrix/sparse-matrix-worker.js ***!
+  \*****************************************************************************************/
+/***/ ((__unused_webpack_module, __webpack_exports__, __webpack_require__) => {
+
+__webpack_require__.r(__webpack_exports__);
+/* harmony import */ var _utils__WEBPACK_IMPORTED_MODULE_0__ = __webpack_require__(/*! ./utils */ "./node_modules/@datagrok-libraries/ml/src/distance-matrix/utils.js");
+/* harmony import */ var _typed_metrics__WEBPACK_IMPORTED_MODULE_1__ = __webpack_require__(/*! ../typed-metrics */ "./node_modules/@datagrok-libraries/ml/src/typed-metrics/index.js");
+/* harmony import */ var _datagrok_libraries_utils_src_bit_array__WEBPACK_IMPORTED_MODULE_2__ = __webpack_require__(/*! @datagrok-libraries/utils/src/bit-array */ "./node_modules/@datagrok-libraries/utils/src/bit-array.js");
+
+
+
+onmessage = async (event) => {
+    const { values, startIdx, endIdx, threshold, fnNames, opts, aggregationMethod, weights } = event.data;
+    try {
+        const i = [];
+        const j = [];
+        const distances = [];
+        const chunkSize = endIdx - startIdx;
+        //const mi = startRow;
+        //const mj = startCol;
+        const aggregate = (0,_utils__WEBPACK_IMPORTED_MODULE_0__.getAggregationFunction)(aggregationMethod, weights);
+        values.forEach((v, colIdx) => {
+            if ((0,_typed_metrics__WEBPACK_IMPORTED_MODULE_1__.isBitArrayMetric)(fnNames[colIdx])) {
+                for (let i = 0; i < v.length; ++i) {
+                    if ((0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(v[i]))
+                        continue;
+                    values[colIdx][i] = new _datagrok_libraries_utils_src_bit_array__WEBPACK_IMPORTED_MODULE_2__["default"](values[colIdx][i]._data, values[colIdx][i]._length);
+                }
+            }
+        });
+        let cnt = 0;
+        const distanceFns = new Array(fnNames.length).fill(null).map((_, i) => new _typed_metrics__WEBPACK_IMPORTED_MODULE_1__.Measure(fnNames[i]).getMeasure(opts[i]));
+        const startRow = values[0].length - 2 - Math.floor(Math.sqrt(-8 * startIdx + 4 * values[0].length * (values[0].length - 1) - 7) / 2 - 0.5);
+        const startCol = startIdx - values[0].length * startRow + Math.floor((startRow + 1) * (startRow + 2) / 2);
+        let mi = startRow;
+        let mj = startCol;
+        while (cnt < chunkSize) {
+            //const value = seq1List[mi] && seq1List[mj] ? hamming(seq1List[mi], seq1List[mj]) : 0;
+            const distanceValues = distanceFns.map((fn, idx) => !(0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(values[idx][mi]) && !(0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(values[idx][mj]) ?
+                fn(values[idx][mi], values[idx][mj]) : 1);
+            const value = distanceValues.length === 1 ? distanceValues[0] : aggregate(distanceValues);
+            if (1 - value >= threshold) {
+                i.push(mi);
+                j.push(mj);
+                distances.push(value);
+            }
+            cnt++;
+            mj++;
+            if (mj === values[0].length) {
+                mi++;
+                mj = mi + 1;
+            }
+        }
+        const iArray = new Int32Array(i);
+        const jArray = new Int32Array(j);
+        const distanceArray = new Float32Array(distances);
+        postMessage({ i: iArray, j: jArray, distance: distanceArray });
+    }
+    catch (e) {
+        postMessage({ error: e });
+    }
+};
+//# 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9uc3QgaTogbnVtYmVyW10gPSBbXTtcbiAgICBjb25zdCBqOiBudW1iZXJbXSA9IFtdO1xuICAgIGNvbnN0IGRpc3RhbmNlczogbnVtYmVyW10gPSBbXTtcbiAgICBjb25zdCBjaHVua1NpemUgPSBlbmRJZHggLSBzdGFydElkeDtcbiAgICAvL2NvbnN0IG1pID0gc3RhcnRSb3c7XG4gICAgLy9jb25zdCBtaiA9IHN0YXJ0Q29sO1xuXG4gICAgY29uc3QgYWdncmVnYXRlID0gZ2V0QWdncmVnYXRpb25GdW5jdGlvbihhZ2dyZWdhdGlvbk1ldGhvZCwgd2VpZ2h0cyk7XG5cbiAgICB2YWx1ZXMuZm9yRWFjaCgodiwgY29sSWR4KSA9PiB7XG4gICAgICBpZiAoaXNCaXRBcnJheU1ldHJpYyhmbk5hbWVzW2NvbElkeF0pKSB7XG4gICAgICAgIGZvciAobGV0IGkgPSAwOyBpIDwgdi5sZW5ndGg7ICsraSkge1xuICAgICAgICAgIGlmIChpc05pbCh2W2ldKSkgY29udGludWU7XG4gICAgICAgICAgdmFsdWVzW2NvbElkeF1baV0gPSBuZXcgQml0QXJyYXkodmFsdWVzW2NvbElkeF1baV0uX2RhdGEsIHZhbHVlc1tjb2xJZHhdW2ldLl9sZW5ndGgpO1xuICAgICAgICB9XG4gICAgICB9XG4gICAgfSk7XG4gICAgbGV0IGNudCA9IDA7XG4gICAgY29uc3QgZGlzdGFuY2VGbnMgPSBuZXcgQXJyYXkoZm5OYW1lcy5sZW5ndGgpLmZpbGwobnVsbCkubWFwKChfLCBpKSA9PiBuZXcgTWVhc3VyZShmbk5hbWVzW2ldKS5nZXRNZWFzdXJlKG9wdHNbaV0pKTtcbiAgICBjb25zdCBzdGFydFJvdyA9IHZhbHVlc1swXS5sZW5ndGggLSAyIC0gTWF0aC5mbG9vcihcbiAgICAgIE1hdGguc3FydCgtOCAqIHN0YXJ0SWR4ICsgNCAqIHZhbHVlc1swXS5sZW5ndGggKiAodmFsdWVzWzBdLmxlbmd0aCAtIDEpIC0gNykgLyAyIC0gMC41KTtcbiAgICBjb25zdCBzdGFydENvbCA9IHN0YXJ0SWR4IC0gdmFsdWVzWzBdLmxlbmd0aCAqIHN0YXJ0Um93ICsgTWF0aC5mbG9vcigoc3RhcnRSb3cgKyAxKSAqIChzdGFydFJvdyArIDIpIC8gMik7XG4gICAgbGV0IG1pID0gc3RhcnRSb3c7XG4gICAgbGV0IG1qID0gc3RhcnRDb2w7XG4gICAgd2hpbGUgKGNudCA8IGNodW5rU2l6ZSkge1xuICAgICAgLy9jb25zdCB2YWx1ZSA9IHNlcTFMaXN0W21pXSAmJiBzZXExTGlzdFttal0gPyBoYW1taW5nKHNlcTFMaXN0W21pXSwgc2VxMUxpc3RbbWpdKSA6IDA7XG4gICAgICBjb25zdCBkaXN0YW5jZVZhbHVlcyA9IGRpc3RhbmNlRm5zLm1hcCgoZm4sIGlkeCkgPT4gIWlzTmlsKHZhbHVlc1tpZHhdW21pXSkgJiYgIWlzTmlsKHZhbHVlc1tpZHhdW21qXSkgP1xuICAgICAgICBmbih2YWx1ZXNbaWR4XVttaV0sIHZhbHVlc1tpZHhdW21qXSkgOiAxKTtcbiAgICAgIGNvbnN0IHZhbHVlID0gZGlzdGFuY2VWYWx1ZXMubGVuZ3RoID09PSAxID8gZGlzdGFuY2VWYWx1ZXNbMF0gOiBhZ2dyZWdhdGUoZGlzdGFuY2VWYWx1ZXMpO1xuICAgICAgaWYgKDEgLSB2YWx1ZSA+PSB0aHJlc2hvbGQpIHtcbiAgICAgICAgaS5wdXNoKG1pKTtcbiAgICAgICAgai5wdXNoKG1qKTtcbiAgICAgICAgZGlzdGFuY2VzLnB1c2godmFsdWUpO1xuICAgICAgfVxuICAgICAgY250Kys7XG4gICAgICBtaisrO1xuICAgICAgaWYgKG1qID09PSB2YWx1ZXNbMF0ubGVuZ3RoKSB7XG4gICAgICAgIG1pKys7XG4gICAgICAgIG1qID0gbWkgKyAxO1xuICAgICAgfVxuICAgIH1cblxuICAgIGNvbnN0IGlBcnJheSA9IG5ldyBJbnQzMkFycmF5KGkpO1xuICAgIGNvbnN0IGpBcnJheSA9IG5ldyBJbnQzMkFycmF5KGopO1xuICAgIGNvbnN0IGRpc3RhbmNlQXJyYXkgPSBuZXcgRmxvYXQzMkFycmF5KGRpc3RhbmNlcyk7XG4gICAgcG9zdE1lc3NhZ2Uoe2k6IGlBcnJheSwgajogakFycmF5LCBkaXN0YW5jZTogZGlzdGFuY2VBcnJheX0pO1xuICB9IGNhdGNoIChlKSB7XG4gICAgcG9zdE1lc3NhZ2Uoe2Vycm9yOiBlfSk7XG4gIH1cbn07XG4iXX0=
+
+/***/ })
+
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