@cyanheads/brapi-mcp-server 0.3.5

package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts

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+/**
+ * @fileoverview `brapi_find_genotype_calls` — pull allele calls across a
+ * germplasm × variant set. Uses BrAPI's async-search pattern
+ * (`POST /search/calls` → `GET /search/calls/{id}` with 202-retry) under
+ * the hood. Enforces a default 100k cap on total calls returned; rows beyond
+ * the cap spill into DatasetStore for export.
+ *
+ * @module mcp-server/tools/definitions/brapi-find-genotype-calls.tool
+ */
+import { z } from '@cyanheads/mcp-ts-core';
+import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
+export declare const brapiFindGenotypeCalls: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
+    alias: z.ZodOptional<z.ZodString>;
+    variantSetDbId: z.ZodOptional<z.ZodString>;
+    variantSetDbIds: z.ZodOptional<z.ZodArray<z.ZodString>>;
+    germplasmDbIds: z.ZodOptional<z.ZodArray<z.ZodString>>;
+    callSetDbIds: z.ZodOptional<z.ZodArray<z.ZodString>>;
+    variantDbIds: z.ZodOptional<z.ZodArray<z.ZodString>>;
+    callFormat: z.ZodOptional<z.ZodEnum<{
+        VCF: "VCF";
+        FLAPJACK: "FLAPJACK";
+        DARTSEQ: "DARTSEQ";
+        JSON: "JSON";
+    }>>;
+    maxCalls: z.ZodOptional<z.ZodNumber>;
+    loadLimit: z.ZodOptional<z.ZodNumber>;
+}, z.core.$strip>, z.ZodObject<{
+    alias: z.ZodString;
+    results: z.ZodArray<z.ZodObject<{
+        callSetDbId: z.ZodOptional<z.ZodString>;
+        callSetName: z.ZodOptional<z.ZodString>;
+        variantDbId: z.ZodOptional<z.ZodString>;
+        variantName: z.ZodOptional<z.ZodString>;
+        variantSetDbId: z.ZodOptional<z.ZodString>;
+        genotype: z.ZodOptional<z.ZodObject<{
+            values: z.ZodOptional<z.ZodArray<z.ZodString>>;
+        }, z.core.$loose>>;
+        genotypeValue: z.ZodOptional<z.ZodString>;
+        phaseSet: z.ZodOptional<z.ZodString>;
+    }, z.core.$loose>>;
+    returnedCount: z.ZodNumber;
+    totalCount: z.ZodNumber;
+    hasMore: z.ZodBoolean;
+    callFormatting: z.ZodObject<{
+        expandHomozygotes: z.ZodOptional<z.ZodBoolean>;
+        unknownString: z.ZodOptional<z.ZodString>;
+        sepPhased: z.ZodOptional<z.ZodString>;
+        sepUnphased: z.ZodOptional<z.ZodString>;
+    }, z.core.$strip>;
+    distributions: z.ZodObject<{
+        callSetName: z.ZodRecord<z.ZodString, z.ZodNumber>;
+        variantName: z.ZodRecord<z.ZodString, z.ZodNumber>;
+        variantSetDbId: z.ZodRecord<z.ZodString, z.ZodNumber>;
+    }, z.core.$strip>;
+    dataset: z.ZodOptional<z.ZodObject<{
+        datasetId: z.ZodString;
+        rowCount: z.ZodNumber;
+        sizeBytes: z.ZodNumber;
+        columns: z.ZodArray<z.ZodString>;
+        createdAt: z.ZodString;
+        expiresAt: z.ZodString;
+        truncated: z.ZodOptional<z.ZodBoolean>;
+        maxRows: z.ZodOptional<z.ZodNumber>;
+    }, z.core.$strip>>;
+    truncated: z.ZodBoolean;
+    warnings: z.ZodArray<z.ZodString>;
+    searchBody: z.ZodRecord<z.ZodString, z.ZodUnknown>;
+}, z.core.$strip>, readonly [{
+    readonly reason: "no_filters";
+    readonly code: JsonRpcErrorCode.ValidationError;
+    readonly when: "No variant set, germplasm, call set, or variant filter was provided";
+    readonly recovery: "Provide variantSetDbId or germplasmDbIds before retrying — unfiltered pulls are too expensive.";
+}]>;
+//# sourceMappingURL=brapi-find-genotype-calls.tool.d.ts.map

package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts.map

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package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js

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+/**
+ * @fileoverview `brapi_find_genotype_calls` — pull allele calls across a
+ * germplasm × variant set. Uses BrAPI's async-search pattern
+ * (`POST /search/calls` → `GET /search/calls/{id}` with 202-retry) under
+ * the hood. Enforces a default 100k cap on total calls returned; rows beyond
+ * the cap spill into DatasetStore for export.
+ *
+ * @module mcp-server/tools/definitions/brapi-find-genotype-calls.tool
+ */
+import { tool, z } from '@cyanheads/mcp-ts-core';
+import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
+import { getBrapiClient } from '../../../services/brapi-client/index.js';
+import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
+import { getDatasetStore, } from '../../../services/dataset-store/index.js';
+import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
+import { AliasInput, asString, buildRequestOptions, computeDistribution, DatasetHandleSchema, renderDatasetHandle, renderDistributions, toDatasetHandle, } from '../shared/find-helpers.js';
+const DEFAULT_MAX_CALLS = 100_000;
+const HARD_MAX_CALLS = 500_000;
+const PAGE_SIZE = 10_000;
+const CallRowSchema = z
+    .object({
+    callSetDbId: z
+        .string()
+        .optional()
+        .describe('FK to the call set (one germplasm × one variant set = one call set).'),
+    callSetName: z.string().optional().describe('Display name of the call set.'),
+    variantDbId: z.string().optional().describe('FK to the variant being called.'),
+    variantName: z.string().optional().describe('Display name / alias of the variant.'),
+    variantSetDbId: z.string().optional().describe('FK to the variant set the call belongs to.'),
+    genotype: z
+        .object({
+        values: z
+            .array(z.string().describe('Per-allele value string.'))
+            .optional()
+            .describe('Encoded allele values — interpret using top-level `callFormatting`.'),
+    })
+        .passthrough()
+        .optional()
+        .describe('Structured genotype payload (array of allele values plus server-specific fields).'),
+    genotypeValue: z
+        .string()
+        .optional()
+        .describe('Legacy flat string form of the call (provided by some servers instead of `genotype`).'),
+    phaseSet: z
+        .string()
+        .optional()
+        .describe('Phase-set identifier linking calls that share a haplotype phase.'),
+})
+    .passthrough()
+    .describe('One genotype call row.');
+const OutputSchema = z.object({
+    alias: z.string().describe('Alias of the registered BrAPI connection the call used.'),
+    results: z.array(CallRowSchema).describe('Call rows returned in-context (up to loadLimit).'),
+    returnedCount: z.number().int().nonnegative().describe('Length of `results[]`.'),
+    totalCount: z
+        .number()
+        .int()
+        .nonnegative()
+        .describe('Total calls collected across all pages (may be capped by `maxCalls`).'),
+    hasMore: z
+        .boolean()
+        .describe('True when the collection was truncated (equivalent to `truncated`).'),
+    callFormatting: z
+        .object({
+        expandHomozygotes: z
+            .boolean()
+            .optional()
+            .describe('When true, homozygous calls are expanded to both alleles.'),
+        unknownString: z
+            .string()
+            .optional()
+            .describe('String used for unknown / missing calls (often "." or "N").'),
+        sepPhased: z
+            .string()
+            .optional()
+            .describe('Separator between phased allele values (typically "|").'),
+        sepUnphased: z
+            .string()
+            .optional()
+            .describe('Separator between unphased allele values (typically "/").'),
+    })
+        .describe('Genotype-encoding hints echoed by the server.'),
+    distributions: z
+        .object({
+        callSetName: z
+            .record(z.string(), z.number())
+            .describe('Call set name → count of calls from that set.'),
+        variantName: z
+            .record(z.string(), z.number())
+            .describe('Variant name → count of calls for that variant.'),
+        variantSetDbId: z
+            .record(z.string(), z.number())
+            .describe('Variant set ID → count of calls from that set.'),
+    })
+        .describe('Value frequency per field across the full collected call set.'),
+    dataset: DatasetHandleSchema.optional().describe('Dataset handle when the full collected calls exceed loadLimit and were spilled to DatasetStore.'),
+    truncated: z
+        .boolean()
+        .describe('True when `maxCalls` was reached and more calls exist upstream.'),
+    warnings: z
+        .array(z.string())
+        .describe('Advisory messages (truncation, capability gaps, partial pulls).'),
+    searchBody: z.record(z.string(), z.unknown()).describe('The body sent to /search/calls.'),
+});
+export const brapiFindGenotypeCalls = tool('brapi_find_genotype_calls', {
+    description: 'Pull genotype calls for a germplasm × variant set, returned as a single resolved batch. Capped per call by maxCalls; rows beyond loadLimit are persisted as a dataset handle for follow-up paging.',
+    annotations: { readOnlyHint: true, openWorldHint: true },
+    errors: [
+        {
+            reason: 'no_filters',
+            code: JsonRpcErrorCode.ValidationError,
+            when: 'No variant set, germplasm, call set, or variant filter was provided',
+            recovery: 'Provide variantSetDbId or germplasmDbIds before retrying — unfiltered pulls are too expensive.',
+        },
+    ],
+    input: z.object({
+        alias: AliasInput,
+        variantSetDbId: z
+            .string()
+            .min(1)
+            .optional()
+            .describe('Scope calls to a single variant set. Strongly recommended.'),
+        variantSetDbIds: z
+            .array(z.string())
+            .optional()
+            .describe('Alternative: multiple variant sets at once.'),
+        germplasmDbIds: z
+            .array(z.string())
+            .optional()
+            .describe('Restrict to these germplasm (call sets).'),
+        callSetDbIds: z.array(z.string()).optional().describe('Restrict to these call sets directly.'),
+        variantDbIds: z.array(z.string()).optional().describe('Restrict to specific variants.'),
+        callFormat: z
+            .enum(['VCF', 'FLAPJACK', 'DARTSEQ', 'JSON'])
+            .optional()
+            .describe('Requested call-encoding format, when the server honors it.'),
+        maxCalls: z
+            .number()
+            .int()
+            .positive()
+            .optional()
+            .describe(`Max calls to pull (default ${DEFAULT_MAX_CALLS}, hard cap ${HARD_MAX_CALLS}).`),
+        loadLimit: z
+            .number()
+            .int()
+            .positive()
+            .optional()
+            .describe('In-context row cap. Rows beyond the cap spill to DatasetStore (if maxCalls > loadLimit).'),
+    }),
+    output: OutputSchema,
+    async handler(input, ctx) {
+        const registry = getServerRegistry();
+        const capabilities = getCapabilityRegistry();
+        const client = getBrapiClient();
+        const datasetStore = getDatasetStore();
+        const connection = await registry.get(ctx, input.alias ?? DEFAULT_ALIAS);
+        const capabilityLookup = {};
+        if (connection.resolvedAuth)
+            capabilityLookup.auth = connection.resolvedAuth;
+        await capabilities.ensure(connection.baseUrl, { service: 'search/calls', method: 'POST' }, ctx, capabilityLookup);
+        const maxCalls = Math.min(input.maxCalls ?? DEFAULT_MAX_CALLS, HARD_MAX_CALLS);
+        const loadLimit = input.loadLimit ?? 200;
+        const searchBody = buildSearchBody(input);
+        if (!searchBody.variantSetDbIds &&
+            !searchBody.variantSetDbId &&
+            !searchBody.germplasmDbIds &&
+            !searchBody.callSetDbIds &&
+            !searchBody.variantDbIds) {
+            throw ctx.fail('no_filters', 'Provide at least one filter (variantSetDbId, variantSetDbIds, germplasmDbIds, callSetDbIds, or variantDbIds) — unfiltered genotype-call pulls are prohibitively expensive.', { filters: searchBody, ...ctx.recoveryFor('no_filters') });
+        }
+        const warnings = [];
+        const collected = await collectCalls({
+            client,
+            connection,
+            ctx,
+            body: searchBody,
+            maxCalls,
+            warnings,
+        });
+        const inContext = collected.rows.slice(0, loadLimit);
+        const distributions = {
+            callSetName: computeDistribution(collected.rows, (r) => asString(r.callSetName)),
+            variantName: computeDistribution(collected.rows, (r) => asString(r.variantName)),
+            variantSetDbId: computeDistribution(collected.rows, (r) => asString(r.variantSetDbId)),
+        };
+        if (collected.rows.length === 0 && hasNamedFilter(searchBody)) {
+            warnings.push('Upstream returned 0 calls for the requested filters. The variant set or filter combination may not match any data on this server.');
+        }
+        const shouldSpill = collected.rows.length > loadLimit;
+        let datasetMeta;
+        if (shouldSpill) {
+            datasetMeta = await spillCalls({
+                store: datasetStore,
+                ctx,
+                connection,
+                body: searchBody,
+                rows: collected.rows,
+                truncated: collected.truncated,
+                maxRows: maxCalls,
+            });
+        }
+        const result = {
+            alias: connection.alias,
+            results: inContext,
+            returnedCount: inContext.length,
+            totalCount: collected.rows.length,
+            hasMore: collected.truncated,
+            callFormatting: collected.callFormatting,
+            distributions,
+            truncated: collected.truncated,
+            warnings,
+            searchBody,
+        };
+        if (datasetMeta)
+            result.dataset = datasetMeta;
+        return result;
+    },
+    format: (result) => {
+        const lines = [];
+        lines.push(`# ${result.returnedCount} of ${result.totalCount} calls — \`${result.alias}\`${result.truncated ? ' (truncated at maxCalls)' : ''}`);
+        lines.push('');
+        lines.push(`Search body: \`${JSON.stringify(result.searchBody)}\``);
+        lines.push('');
+        lines.push('## Call formatting');
+        const f = result.callFormatting;
+        lines.push(`- expandHomozygotes: ${f.expandHomozygotes ?? '—'}`);
+        lines.push(`- unknownString: ${f.unknownString ?? '—'}`);
+        lines.push(`- sepPhased: ${f.sepPhased ?? '—'}`);
+        lines.push(`- sepUnphased: ${f.sepUnphased ?? '—'}`);
+        lines.push('');
+        lines.push('## Distributions');
+        lines.push(renderDistributions(result.distributions) || '_No values to summarize._');
+        lines.push('');
+        lines.push('## Calls');
+        if (result.results.length === 0) {
+            lines.push('_No calls returned._');
+        }
+        else {
+            for (const call of result.results) {
+                const parts = [];
+                parts.push(`**${call.callSetName ?? call.callSetDbId ?? '?'}**`);
+                if (call.callSetDbId)
+                    parts.push(`callSetDbId=${call.callSetDbId}`);
+                parts.push(`variant=${call.variantName ?? call.variantDbId ?? '?'}`);
+                if (call.variantDbId)
+                    parts.push(`variantDbId=${call.variantDbId}`);
+                if (call.variantSetDbId)
+                    parts.push(`set=${call.variantSetDbId}`);
+                if (call.genotype?.values?.length)
+                    parts.push(`genotype=${call.genotype.values.join('|')}`);
+                if (call.genotypeValue)
+                    parts.push(`genotypeValue=${call.genotypeValue}`);
+                if (call.phaseSet)
+                    parts.push(`phaseSet=${call.phaseSet}`);
+                lines.push(`- ${parts.join(' · ')}`);
+            }
+        }
+        if (result.dataset) {
+            lines.push('');
+            lines.push('## Dataset handle');
+            lines.push(...renderDatasetHandle(result.dataset));
+        }
+        if (result.warnings.length > 0) {
+            lines.push('');
+            lines.push('## Warnings');
+            for (const w of result.warnings)
+                lines.push(`- ${w}`);
+        }
+        return [{ type: 'text', text: lines.join('\n') }];
+    },
+});
+function buildSearchBody(input) {
+    const body = {};
+    if (input.variantSetDbId)
+        body.variantSetDbIds = [input.variantSetDbId];
+    if (input.variantSetDbIds?.length) {
+        body.variantSetDbIds = Array.from(new Set([...(body.variantSetDbIds ?? []), ...input.variantSetDbIds]));
+    }
+    if (input.germplasmDbIds?.length)
+        body.germplasmDbIds = input.germplasmDbIds;
+    if (input.callSetDbIds?.length)
+        body.callSetDbIds = input.callSetDbIds;
+    if (input.variantDbIds?.length)
+        body.variantDbIds = input.variantDbIds;
+    if (input.callFormat)
+        body.callFormat = input.callFormat;
+    body.pageSize = PAGE_SIZE;
+    return body;
+}
+async function collectCalls(input) {
+    const rows = [];
+    let callFormatting = {};
+    let truncated = false;
+    const firstBody = { ...input.body, page: 0 };
+    const first = await input.client.postSearch(input.connection.baseUrl, 'calls', firstBody, input.ctx, buildRequestOptions(input.connection));
+    let envelope;
+    let searchResultsDbId;
+    if (first.kind === 'sync') {
+        envelope = first.envelope;
+    }
+    else {
+        searchResultsDbId = first.searchResultsDbId;
+        envelope = await input.client.getSearchResults(input.connection.baseUrl, 'calls', first.searchResultsDbId, input.ctx, buildRequestOptions(input.connection));
+    }
+    consumePage(envelope, rows, (cf) => {
+        callFormatting = cf;
+    });
+    const totalPages = envelope.metadata?.pagination?.totalPages;
+    for (let page = 1; page < (totalPages ?? 1); page++) {
+        if (rows.length >= input.maxCalls) {
+            truncated = true;
+            break;
+        }
+        if (input.ctx.signal.aborted)
+            break;
+        let pageEnvelope;
+        if (searchResultsDbId) {
+            pageEnvelope = await input.client.getSearchResults(input.connection.baseUrl, 'calls', searchResultsDbId, input.ctx, buildRequestOptions(input.connection, { page, pageSize: PAGE_SIZE }));
+        }
+        else {
+            const nextSearch = await input.client.postSearch(input.connection.baseUrl, 'calls', { ...input.body, page }, input.ctx, buildRequestOptions(input.connection));
+            if (nextSearch.kind === 'sync') {
+                pageEnvelope = nextSearch.envelope;
+            }
+            else {
+                pageEnvelope = await input.client.getSearchResults(input.connection.baseUrl, 'calls', nextSearch.searchResultsDbId, input.ctx, buildRequestOptions(input.connection));
+            }
+        }
+        consumePage(pageEnvelope, rows, (cf) => {
+            callFormatting = cf;
+        });
+    }
+    if (rows.length > input.maxCalls) {
+        rows.length = input.maxCalls;
+        truncated = true;
+        input.warnings.push(`Truncated at maxCalls=${input.maxCalls}. Increase maxCalls or narrow filters.`);
+    }
+    return { rows, callFormatting, truncated };
+}
+function consumePage(envelope, rows, setCallFormatting) {
+    const result = envelope.result;
+    if (!result || typeof result !== 'object')
+        return;
+    const record = result;
+    const cf = {};
+    if (typeof record.expandHomozygotes === 'boolean')
+        cf.expandHomozygotes = record.expandHomozygotes;
+    if (typeof record.unknownString === 'string')
+        cf.unknownString = record.unknownString;
+    if (typeof record.sepPhased === 'string')
+        cf.sepPhased = record.sepPhased;
+    if (typeof record.sepUnphased === 'string')
+        cf.sepUnphased = record.sepUnphased;
+    setCallFormatting(cf);
+    const data = record.data;
+    if (!Array.isArray(data))
+        return;
+    for (const entry of data) {
+        if (typeof entry === 'object' && entry !== null) {
+            rows.push(entry);
+        }
+    }
+}
+async function spillCalls(input) {
+    const createInput = {
+        source: 'find_genotype_calls',
+        baseUrl: input.connection.baseUrl,
+        query: input.body,
+        rows: input.rows,
+    };
+    if (input.truncated) {
+        createInput.truncated = true;
+        createInput.maxRows = input.maxRows;
+    }
+    const metadata = await input.store.create(input.ctx, createInput);
+    return toDatasetHandle(metadata);
+}
+function hasNamedFilter(body) {
+    const isNonEmptyArray = (v) => Array.isArray(v) && v.length > 0;
+    return (typeof body.variantSetDbId === 'string' ||
+        isNonEmptyArray(body.variantSetDbIds) ||
+        isNonEmptyArray(body.germplasmDbIds) ||
+        isNonEmptyArray(body.callSetDbIds) ||
+        isNonEmptyArray(body.variantDbIds));
+}
+//# sourceMappingURL=brapi-find-genotype-calls.tool.js.map

package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js.map

@@ -0,0 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts

@@ -0,0 +1,72 @@
+/**
+ * @fileoverview `brapi_find_germplasm` — search germplasm by name, synonym,
+ * accession, attribute, or free text. Matches BrAPI's registered-synonym
+ * semantics. Returns distributions for crop / genus / species / collection
+ * and spills to DatasetStore when the upstream total exceeds loadLimit.
+ *
+ * @module mcp-server/tools/definitions/brapi-find-germplasm.tool
+ */
+import { z } from '@cyanheads/mcp-ts-core';
+export declare const brapiFindGermplasm: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
+    alias: z.ZodOptional<z.ZodString>;
+    names: z.ZodOptional<z.ZodArray<z.ZodString>>;
+    germplasmDbIds: z.ZodOptional<z.ZodArray<z.ZodString>>;
+    germplasmPUIs: z.ZodOptional<z.ZodArray<z.ZodString>>;
+    accessionNumbers: z.ZodOptional<z.ZodArray<z.ZodString>>;
+    crops: z.ZodOptional<z.ZodArray<z.ZodString>>;
+    synonyms: z.ZodOptional<z.ZodArray<z.ZodString>>;
+    collections: z.ZodOptional<z.ZodArray<z.ZodString>>;
+    genus: z.ZodOptional<z.ZodString>;
+    species: z.ZodOptional<z.ZodString>;
+    text: z.ZodOptional<z.ZodString>;
+    loadLimit: z.ZodOptional<z.ZodNumber>;
+    extraFilters: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
+}, z.core.$strip>, z.ZodObject<{
+    alias: z.ZodString;
+    results: z.ZodArray<z.ZodObject<{
+        germplasmDbId: z.ZodString;
+        germplasmName: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        germplasmPUI: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        commonCropName: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        accessionNumber: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        genus: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        species: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        subtaxa: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        defaultDisplayName: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        pedigree: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        biologicalStatusOfAccessionDescription: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        germplasmOrigin: z.ZodOptional<z.ZodNullable<z.ZodArray<z.ZodObject<{}, z.core.$loose>>>>;
+        countryOfOriginCode: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        collection: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        instituteCode: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        instituteName: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        synonyms: z.ZodOptional<z.ZodNullable<z.ZodArray<z.ZodObject<{
+            synonym: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+            type: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        }, z.core.$loose>>>>;
+    }, z.core.$loose>>;
+    returnedCount: z.ZodNumber;
+    totalCount: z.ZodNumber;
+    hasMore: z.ZodBoolean;
+    distributions: z.ZodObject<{
+        commonCropName: z.ZodRecord<z.ZodString, z.ZodNumber>;
+        genus: z.ZodRecord<z.ZodString, z.ZodNumber>;
+        species: z.ZodRecord<z.ZodString, z.ZodNumber>;
+        collection: z.ZodRecord<z.ZodString, z.ZodNumber>;
+        countryOfOriginCode: z.ZodRecord<z.ZodString, z.ZodNumber>;
+    }, z.core.$strip>;
+    refinementHint: z.ZodOptional<z.ZodString>;
+    dataset: z.ZodOptional<z.ZodObject<{
+        datasetId: z.ZodString;
+        rowCount: z.ZodNumber;
+        sizeBytes: z.ZodNumber;
+        columns: z.ZodArray<z.ZodString>;
+        createdAt: z.ZodString;
+        expiresAt: z.ZodString;
+        truncated: z.ZodOptional<z.ZodBoolean>;
+        maxRows: z.ZodOptional<z.ZodNumber>;
+    }, z.core.$strip>>;
+    warnings: z.ZodArray<z.ZodString>;
+    appliedFilters: z.ZodRecord<z.ZodString, z.ZodUnknown>;
+}, z.core.$strip>, undefined>;
+//# sourceMappingURL=brapi-find-germplasm.tool.d.ts.map

package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts.map

@@ -0,0 +1 @@
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