@cyanheads/brapi-mcp-server 0.3.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CLAUDE.md +391 -0
- package/Dockerfile +99 -0
- package/LICENSE +201 -0
- package/README.md +590 -0
- package/changelog/0.1.x/0.1.0.md +19 -0
- package/changelog/0.1.x/0.1.1.md +27 -0
- package/changelog/0.1.x/0.1.2.md +22 -0
- package/changelog/0.2.x/0.2.0.md +35 -0
- package/changelog/0.2.x/0.2.1.md +36 -0
- package/changelog/0.3.x/0.3.0.md +38 -0
- package/changelog/0.3.x/0.3.1.md +40 -0
- package/changelog/0.3.x/0.3.2.md +29 -0
- package/changelog/0.3.x/0.3.3.md +19 -0
- package/changelog/0.3.x/0.3.4.md +33 -0
- package/changelog/0.3.x/0.3.5.md +24 -0
- package/changelog/template.md +51 -0
- package/dist/config/alias-credentials.d.ts +82 -0
- package/dist/config/alias-credentials.d.ts.map +1 -0
- package/dist/config/alias-credentials.js +159 -0
- package/dist/config/alias-credentials.js.map +1 -0
- package/dist/config/server-config.d.ts +39 -0
- package/dist/config/server-config.d.ts.map +1 -0
- package/dist/config/server-config.js +128 -0
- package/dist/config/server-config.js.map +1 -0
- package/dist/index.d.ts +10 -0
- package/dist/index.d.ts.map +1 -0
- package/dist/index.js +85 -0
- package/dist/index.js.map +1 -0
- package/dist/mcp-server/prompts/definitions/brapi-eda-study.prompt.d.ts +14 -0
- package/dist/mcp-server/prompts/definitions/brapi-eda-study.prompt.d.ts.map +1 -0
- package/dist/mcp-server/prompts/definitions/brapi-eda-study.prompt.js +75 -0
- package/dist/mcp-server/prompts/definitions/brapi-eda-study.prompt.js.map +1 -0
- package/dist/mcp-server/prompts/definitions/brapi-meta-analysis.prompt.d.ts +16 -0
- package/dist/mcp-server/prompts/definitions/brapi-meta-analysis.prompt.d.ts.map +1 -0
- package/dist/mcp-server/prompts/definitions/brapi-meta-analysis.prompt.js +109 -0
- package/dist/mcp-server/prompts/definitions/brapi-meta-analysis.prompt.js.map +1 -0
- package/dist/mcp-server/resources/definitions/brapi-calls.resource.d.ts +11 -0
- package/dist/mcp-server/resources/definitions/brapi-calls.resource.d.ts.map +1 -0
- package/dist/mcp-server/resources/definitions/brapi-calls.resource.js +46 -0
- package/dist/mcp-server/resources/definitions/brapi-calls.resource.js.map +1 -0
- package/dist/mcp-server/resources/definitions/brapi-dataset.resource.d.ts +13 -0
- package/dist/mcp-server/resources/definitions/brapi-dataset.resource.d.ts.map +1 -0
- package/dist/mcp-server/resources/definitions/brapi-dataset.resource.js +26 -0
- package/dist/mcp-server/resources/definitions/brapi-dataset.resource.js.map +1 -0
- package/dist/mcp-server/resources/definitions/brapi-filters.resource.d.ts +19 -0
- package/dist/mcp-server/resources/definitions/brapi-filters.resource.d.ts.map +1 -0
- package/dist/mcp-server/resources/definitions/brapi-filters.resource.js +45 -0
- package/dist/mcp-server/resources/definitions/brapi-filters.resource.js.map +1 -0
- package/dist/mcp-server/resources/definitions/brapi-germplasm.resource.d.ts +18 -0
- package/dist/mcp-server/resources/definitions/brapi-germplasm.resource.d.ts.map +1 -0
- package/dist/mcp-server/resources/definitions/brapi-germplasm.resource.js +34 -0
- package/dist/mcp-server/resources/definitions/brapi-germplasm.resource.js.map +1 -0
- package/dist/mcp-server/resources/definitions/brapi-server-info.resource.d.ts +11 -0
- package/dist/mcp-server/resources/definitions/brapi-server-info.resource.d.ts.map +1 -0
- package/dist/mcp-server/resources/definitions/brapi-server-info.resource.js +28 -0
- package/dist/mcp-server/resources/definitions/brapi-server-info.resource.js.map +1 -0
- package/dist/mcp-server/resources/definitions/brapi-study.resource.d.ts +18 -0
- package/dist/mcp-server/resources/definitions/brapi-study.resource.d.ts.map +1 -0
- package/dist/mcp-server/resources/definitions/brapi-study.resource.js +34 -0
- package/dist/mcp-server/resources/definitions/brapi-study.resource.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-connect.tool.d.ts +82 -0
- package/dist/mcp-server/tools/definitions/brapi-connect.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-connect.tool.js +106 -0
- package/dist/mcp-server/tools/definitions/brapi-connect.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-describe-filters.tool.d.ts +41 -0
- package/dist/mcp-server/tools/definitions/brapi-describe-filters.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-describe-filters.tool.js +88 -0
- package/dist/mcp-server/tools/definitions/brapi-describe-filters.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts +74 -0
- package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js +386 -0
- package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts +72 -0
- package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js +290 -0
- package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts +65 -0
- package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js +243 -0
- package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts +63 -0
- package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js +278 -0
- package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.d.ts +74 -0
- package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js +288 -0
- package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts +69 -0
- package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js +243 -0
- package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts +86 -0
- package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js +337 -0
- package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts +59 -0
- package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js +248 -0
- package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.d.ts +59 -0
- package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.js +306 -0
- package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-get-image.tool.d.ts +57 -0
- package/dist/mcp-server/tools/definitions/brapi-get-image.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js +291 -0
- package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts +75 -0
- package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-get-study.tool.js +323 -0
- package/dist/mcp-server/tools/definitions/brapi-get-study.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-manage-dataset.tool.d.ts +87 -0
- package/dist/mcp-server/tools/definitions/brapi-manage-dataset.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-manage-dataset.tool.js +296 -0
- package/dist/mcp-server/tools/definitions/brapi-manage-dataset.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-raw-get.tool.d.ts +35 -0
- package/dist/mcp-server/tools/definitions/brapi-raw-get.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-raw-get.tool.js +148 -0
- package/dist/mcp-server/tools/definitions/brapi-raw-get.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.d.ts +33 -0
- package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.js +126 -0
- package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-server-info.tool.d.ts +51 -0
- package/dist/mcp-server/tools/definitions/brapi-server-info.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-server-info.tool.js +41 -0
- package/dist/mcp-server/tools/definitions/brapi-server-info.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.d.ts +117 -0
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.js +574 -0
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.d.ts +52 -0
- package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.js +420 -0
- package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.js.map +1 -0
- package/dist/mcp-server/tools/shared/connect-auth-schema.d.ts +29 -0
- package/dist/mcp-server/tools/shared/connect-auth-schema.d.ts.map +1 -0
- package/dist/mcp-server/tools/shared/connect-auth-schema.js +55 -0
- package/dist/mcp-server/tools/shared/connect-auth-schema.js.map +1 -0
- package/dist/mcp-server/tools/shared/find-helpers.d.ts +143 -0
- package/dist/mcp-server/tools/shared/find-helpers.d.ts.map +1 -0
- package/dist/mcp-server/tools/shared/find-helpers.js +319 -0
- package/dist/mcp-server/tools/shared/find-helpers.js.map +1 -0
- package/dist/mcp-server/tools/shared/orientation-envelope.d.ts +97 -0
- package/dist/mcp-server/tools/shared/orientation-envelope.d.ts.map +1 -0
- package/dist/mcp-server/tools/shared/orientation-envelope.js +254 -0
- package/dist/mcp-server/tools/shared/orientation-envelope.js.map +1 -0
- package/dist/mcp-server/tools/shared/raw-routing-hints.d.ts +10 -0
- package/dist/mcp-server/tools/shared/raw-routing-hints.d.ts.map +1 -0
- package/dist/mcp-server/tools/shared/raw-routing-hints.js +46 -0
- package/dist/mcp-server/tools/shared/raw-routing-hints.js.map +1 -0
- package/dist/services/brapi-client/brapi-client.d.ts +76 -0
- package/dist/services/brapi-client/brapi-client.d.ts.map +1 -0
- package/dist/services/brapi-client/brapi-client.js +320 -0
- package/dist/services/brapi-client/brapi-client.js.map +1 -0
- package/dist/services/brapi-client/index.d.ts +9 -0
- package/dist/services/brapi-client/index.d.ts.map +1 -0
- package/dist/services/brapi-client/index.js +7 -0
- package/dist/services/brapi-client/index.js.map +1 -0
- package/dist/services/brapi-client/types.d.ts +82 -0
- package/dist/services/brapi-client/types.d.ts.map +1 -0
- package/dist/services/brapi-client/types.js +8 -0
- package/dist/services/brapi-client/types.js.map +1 -0
- package/dist/services/brapi-filters/catalog.d.ts +14 -0
- package/dist/services/brapi-filters/catalog.d.ts.map +1 -0
- package/dist/services/brapi-filters/catalog.js +490 -0
- package/dist/services/brapi-filters/catalog.js.map +1 -0
- package/dist/services/brapi-filters/index.d.ts +8 -0
- package/dist/services/brapi-filters/index.d.ts.map +1 -0
- package/dist/services/brapi-filters/index.js +7 -0
- package/dist/services/brapi-filters/index.js.map +1 -0
- package/dist/services/brapi-filters/types.d.ts +23 -0
- package/dist/services/brapi-filters/types.d.ts.map +1 -0
- package/dist/services/brapi-filters/types.js +9 -0
- package/dist/services/brapi-filters/types.js.map +1 -0
- package/dist/services/capability-registry/capability-registry.d.ts +51 -0
- package/dist/services/capability-registry/capability-registry.d.ts.map +1 -0
- package/dist/services/capability-registry/capability-registry.js +234 -0
- package/dist/services/capability-registry/capability-registry.js.map +1 -0
- package/dist/services/capability-registry/index.d.ts +9 -0
- package/dist/services/capability-registry/index.d.ts.map +1 -0
- package/dist/services/capability-registry/index.js +7 -0
- package/dist/services/capability-registry/index.js.map +1 -0
- package/dist/services/capability-registry/types.d.ts +67 -0
- package/dist/services/capability-registry/types.d.ts.map +1 -0
- package/dist/services/capability-registry/types.js +9 -0
- package/dist/services/capability-registry/types.js.map +1 -0
- package/dist/services/dataset-store/dataset-store.d.ts +35 -0
- package/dist/services/dataset-store/dataset-store.d.ts.map +1 -0
- package/dist/services/dataset-store/dataset-store.js +190 -0
- package/dist/services/dataset-store/dataset-store.js.map +1 -0
- package/dist/services/dataset-store/index.d.ts +8 -0
- package/dist/services/dataset-store/index.d.ts.map +1 -0
- package/dist/services/dataset-store/index.js +7 -0
- package/dist/services/dataset-store/index.js.map +1 -0
- package/dist/services/dataset-store/types.d.ts +65 -0
- package/dist/services/dataset-store/types.d.ts.map +1 -0
- package/dist/services/dataset-store/types.js +8 -0
- package/dist/services/dataset-store/types.js.map +1 -0
- package/dist/services/ontology-resolver/index.d.ts +8 -0
- package/dist/services/ontology-resolver/index.d.ts.map +1 -0
- package/dist/services/ontology-resolver/index.js +7 -0
- package/dist/services/ontology-resolver/index.js.map +1 -0
- package/dist/services/ontology-resolver/ontology-resolver.d.ts +49 -0
- package/dist/services/ontology-resolver/ontology-resolver.d.ts.map +1 -0
- package/dist/services/ontology-resolver/ontology-resolver.js +99 -0
- package/dist/services/ontology-resolver/ontology-resolver.js.map +1 -0
- package/dist/services/ontology-resolver/types.d.ts +38 -0
- package/dist/services/ontology-resolver/types.d.ts.map +1 -0
- package/dist/services/ontology-resolver/types.js +8 -0
- package/dist/services/ontology-resolver/types.js.map +1 -0
- package/dist/services/reference-data-cache/index.d.ts +9 -0
- package/dist/services/reference-data-cache/index.d.ts.map +1 -0
- package/dist/services/reference-data-cache/index.js +7 -0
- package/dist/services/reference-data-cache/index.js.map +1 -0
- package/dist/services/reference-data-cache/reference-data-cache.d.ts +31 -0
- package/dist/services/reference-data-cache/reference-data-cache.d.ts.map +1 -0
- package/dist/services/reference-data-cache/reference-data-cache.js +131 -0
- package/dist/services/reference-data-cache/reference-data-cache.js.map +1 -0
- package/dist/services/reference-data-cache/types.d.ts +42 -0
- package/dist/services/reference-data-cache/types.d.ts.map +1 -0
- package/dist/services/reference-data-cache/types.js +9 -0
- package/dist/services/reference-data-cache/types.js.map +1 -0
- package/dist/services/server-registry/index.d.ts +9 -0
- package/dist/services/server-registry/index.d.ts.map +1 -0
- package/dist/services/server-registry/index.js +7 -0
- package/dist/services/server-registry/index.js.map +1 -0
- package/dist/services/server-registry/server-registry.d.ts +57 -0
- package/dist/services/server-registry/server-registry.d.ts.map +1 -0
- package/dist/services/server-registry/server-registry.js +210 -0
- package/dist/services/server-registry/server-registry.js.map +1 -0
- package/dist/services/server-registry/types.d.ts +43 -0
- package/dist/services/server-registry/types.d.ts.map +1 -0
- package/dist/services/server-registry/types.js +10 -0
- package/dist/services/server-registry/types.js.map +1 -0
- package/package.json +86 -0
- package/server.json +99 -0
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/**
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* @fileoverview `brapi_find_variables` — find observation variables (traits)
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* by name, trait class, ontology term, or free-text query. When `text` is
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* supplied, results are re-ranked client-side via OntologyResolver; when
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* the server exposes ontology metadata, matches can resolve to ontology
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* URIs. Otherwise falls back to pure substring ordering.
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*
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* @module mcp-server/tools/definitions/brapi-find-variables.tool
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*/
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import { z } from '@cyanheads/mcp-ts-core';
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export declare const brapiFindVariables: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
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alias: z.ZodOptional<z.ZodString>;
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variables: z.ZodOptional<z.ZodArray<z.ZodString>>;
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variableNames: z.ZodOptional<z.ZodArray<z.ZodString>>;
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variablePUIs: z.ZodOptional<z.ZodArray<z.ZodString>>;
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traitClasses: z.ZodOptional<z.ZodArray<z.ZodString>>;
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ontologies: z.ZodOptional<z.ZodArray<z.ZodString>>;
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studies: z.ZodOptional<z.ZodArray<z.ZodString>>;
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methods: z.ZodOptional<z.ZodArray<z.ZodString>>;
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scales: z.ZodOptional<z.ZodArray<z.ZodString>>;
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crop: z.ZodOptional<z.ZodString>;
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text: z.ZodOptional<z.ZodString>;
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loadLimit: z.ZodOptional<z.ZodNumber>;
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extraFilters: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
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}, z.core.$strip>, z.ZodObject<{
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alias: z.ZodString;
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results: z.ZodArray<z.ZodObject<{
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observationVariableDbId: z.ZodString;
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observationVariableName: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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observationVariablePUI: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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ontologyDbId: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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ontologyName: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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commonCropName: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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trait: z.ZodOptional<z.ZodNullable<z.ZodObject<{
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traitDbId: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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traitName: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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traitClass: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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description: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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synonyms: z.ZodOptional<z.ZodNullable<z.ZodArray<z.ZodString>>>;
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}, z.core.$loose>>>;
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+
scale: z.ZodOptional<z.ZodNullable<z.ZodObject<{
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+
scaleDbId: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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scaleName: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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dataType: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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}, z.core.$loose>>>;
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method: z.ZodOptional<z.ZodNullable<z.ZodObject<{
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methodDbId: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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methodName: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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}, z.core.$loose>>>;
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}, z.core.$loose>>;
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returnedCount: z.ZodNumber;
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totalCount: z.ZodNumber;
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hasMore: z.ZodBoolean;
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distributions: z.ZodObject<{
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ontologyDbId: z.ZodRecord<z.ZodString, z.ZodNumber>;
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traitClass: z.ZodRecord<z.ZodString, z.ZodNumber>;
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scaleName: z.ZodRecord<z.ZodString, z.ZodNumber>;
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}, z.core.$strip>;
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ontologyCandidates: z.ZodArray<z.ZodObject<{
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termId: z.ZodOptional<z.ZodString>;
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name: z.ZodOptional<z.ZodString>;
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description: z.ZodOptional<z.ZodString>;
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synonyms: z.ZodOptional<z.ZodArray<z.ZodString>>;
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ontologyDbId: z.ZodOptional<z.ZodString>;
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source: z.ZodEnum<{
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puiMatch: "puiMatch";
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nameMatch: "nameMatch";
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synonymMatch: "synonymMatch";
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traitClassMatch: "traitClassMatch";
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}>;
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}, z.core.$strip>>;
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refinementHint: z.ZodOptional<z.ZodString>;
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dataset: z.ZodOptional<z.ZodObject<{
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datasetId: z.ZodString;
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rowCount: z.ZodNumber;
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sizeBytes: z.ZodNumber;
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columns: z.ZodArray<z.ZodString>;
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createdAt: z.ZodString;
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expiresAt: z.ZodString;
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truncated: z.ZodOptional<z.ZodBoolean>;
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maxRows: z.ZodOptional<z.ZodNumber>;
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}, z.core.$strip>>;
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warnings: z.ZodArray<z.ZodString>;
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appliedFilters: z.ZodRecord<z.ZodString, z.ZodUnknown>;
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}, z.core.$strip>, undefined>;
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//# sourceMappingURL=brapi-find-variables.tool.d.ts.map
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@@ -0,0 +1 @@
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{"version":3,"file":"brapi-find-variables.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-variables.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAgJjD,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;6BA6N7B,CAAC"}
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@@ -0,0 +1,337 @@
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/**
|
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2
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+
* @fileoverview `brapi_find_variables` — find observation variables (traits)
|
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3
|
+
* by name, trait class, ontology term, or free-text query. When `text` is
|
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4
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+
* supplied, results are re-ranked client-side via OntologyResolver; when
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* the server exposes ontology metadata, matches can resolve to ontology
|
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* URIs. Otherwise falls back to pure substring ordering.
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*
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* @module mcp-server/tools/definitions/brapi-find-variables.tool
|
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9
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+
*/
|
|
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|
+
import { tool, z } from '@cyanheads/mcp-ts-core';
|
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|
+
import { getServerConfig } from '../../../config/server-config.js';
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12
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+
import { getBrapiClient } from '../../../services/brapi-client/index.js';
|
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+
import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
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import { getDatasetStore } from '../../../services/dataset-store/index.js';
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+
import { getOntologyResolver, } from '../../../services/ontology-resolver/index.js';
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|
+
import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
|
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|
+
import { AliasInput, asString, buildRefinementHint, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, LoadLimitInput, loadInitialPage, maybeSpill, mergeFilters, renderDatasetHandle, renderDistributions, } from '../shared/find-helpers.js';
|
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|
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const VariableRowSchema = z
|
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+
.object({
|
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|
+
observationVariableDbId: z
|
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|
+
.string()
|
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|
+
.describe('Server-side identifier for the observation variable.'),
|
|
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|
+
observationVariableName: z.string().nullish().describe('Display name.'),
|
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|
+
observationVariablePUI: z
|
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|
+
.string()
|
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|
+
.nullish()
|
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|
+
.describe('Persistent unique identifier — typically an ontology term URI.'),
|
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|
+
ontologyDbId: z.string().nullish().describe('FK to the owning ontology.'),
|
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|
+
ontologyName: z.string().nullish().describe('Display name of the owning ontology.'),
|
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|
+
commonCropName: z.string().nullish().describe('Common crop name this variable is scoped to.'),
|
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|
+
trait: z
|
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32
|
+
.object({
|
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33
|
+
traitDbId: z.string().nullish().describe('FK to the trait.'),
|
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|
+
traitName: z.string().nullish().describe('Display name of the trait.'),
|
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|
+
traitClass: z
|
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|
+
.string()
|
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|
+
.nullish()
|
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|
+
.describe('High-level trait grouping (e.g. "agronomic", "morphological").'),
|
|
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|
+
description: z.string().nullish().describe('Free-text trait description.'),
|
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40
|
+
synonyms: z
|
|
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|
+
.array(z.string().describe('Trait synonym value.'))
|
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|
+
.nullish()
|
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43
|
+
.describe('Registered trait synonyms.'),
|
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+
})
|
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45
|
+
.passthrough()
|
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|
+
.nullish()
|
|
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|
+
.describe('The biological trait this variable measures.'),
|
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|
+
scale: z
|
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|
+
.object({
|
|
50
|
+
scaleDbId: z.string().nullish().describe('FK to the scale.'),
|
|
51
|
+
scaleName: z.string().nullish().describe('Display name of the scale.'),
|
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|
+
dataType: z
|
|
53
|
+
.string()
|
|
54
|
+
.nullish()
|
|
55
|
+
.describe('Scale data type (e.g. "Numerical", "Categorical", "Date", "Text").'),
|
|
56
|
+
})
|
|
57
|
+
.passthrough()
|
|
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|
+
.nullish()
|
|
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|
+
.describe('Scale used to record this variable (units / type / range).'),
|
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+
method: z
|
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+
.object({
|
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|
+
methodDbId: z.string().nullish().describe('FK to the method.'),
|
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|
+
methodName: z.string().nullish().describe('Display name of the method.'),
|
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|
+
})
|
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65
|
+
.passthrough()
|
|
66
|
+
.nullish()
|
|
67
|
+
.describe('Measurement method or protocol used to collect this variable.'),
|
|
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|
+
})
|
|
69
|
+
.passthrough()
|
|
70
|
+
.describe('One BrAPI observation variable record.');
|
|
71
|
+
const CandidateSchema = z
|
|
72
|
+
.object({
|
|
73
|
+
termId: z
|
|
74
|
+
.string()
|
|
75
|
+
.optional()
|
|
76
|
+
.describe('Ontology term ID / PUI when available (e.g. "CO_334:0000013").'),
|
|
77
|
+
name: z.string().optional().describe('Display name of the candidate.'),
|
|
78
|
+
description: z.string().optional().describe('Trait description, when available.'),
|
|
79
|
+
synonyms: z
|
|
80
|
+
.array(z.string().describe('Registered synonym.'))
|
|
81
|
+
.optional()
|
|
82
|
+
.describe('Combined variable + trait synonyms.'),
|
|
83
|
+
ontologyDbId: z.string().optional().describe('Owning ontology ID.'),
|
|
84
|
+
source: z
|
|
85
|
+
.enum(['puiMatch', 'nameMatch', 'synonymMatch', 'traitClassMatch'])
|
|
86
|
+
.describe('How the candidate was ranked — PUI exact / name / synonym / trait-class.'),
|
|
87
|
+
})
|
|
88
|
+
.describe('One ranked ontology candidate from a free-text query.');
|
|
89
|
+
const OutputSchema = z.object({
|
|
90
|
+
alias: z.string().describe('Alias of the registered BrAPI connection the call used.'),
|
|
91
|
+
results: z
|
|
92
|
+
.array(VariableRowSchema)
|
|
93
|
+
.describe('Observation variable rows returned in-context (up to loadLimit). Rows matching `text` are promoted to the top when the free-text query produces candidates.'),
|
|
94
|
+
returnedCount: z.number().int().nonnegative().describe('Length of `results[]`.'),
|
|
95
|
+
totalCount: z.number().int().nonnegative().describe('Total rows reported by the server.'),
|
|
96
|
+
hasMore: z.boolean().describe('True when more rows exist beyond the returned set.'),
|
|
97
|
+
distributions: z
|
|
98
|
+
.object({
|
|
99
|
+
ontologyDbId: z
|
|
100
|
+
.record(z.string(), z.number())
|
|
101
|
+
.describe('Ontology ID → count of variables in that ontology.'),
|
|
102
|
+
traitClass: z
|
|
103
|
+
.record(z.string(), z.number())
|
|
104
|
+
.describe('Trait class → count of variables in that class.'),
|
|
105
|
+
scaleName: z
|
|
106
|
+
.record(z.string(), z.number())
|
|
107
|
+
.describe('Scale name → count of variables using that scale.'),
|
|
108
|
+
})
|
|
109
|
+
.describe('Value frequency per field across the full result set.'),
|
|
110
|
+
ontologyCandidates: z
|
|
111
|
+
.array(CandidateSchema)
|
|
112
|
+
.describe('Top ranked candidates from the free-text query (if any). Empty when `text` was not supplied.'),
|
|
113
|
+
refinementHint: z
|
|
114
|
+
.string()
|
|
115
|
+
.optional()
|
|
116
|
+
.describe('Suggested next-step query refinement when the result set is large.'),
|
|
117
|
+
dataset: DatasetHandleSchema.optional().describe('Dataset handle when the full result set was persisted to DatasetStore.'),
|
|
118
|
+
warnings: z
|
|
119
|
+
.array(z.string())
|
|
120
|
+
.describe('Advisory messages (filter overrides, partial data, capability gaps, etc.).'),
|
|
121
|
+
appliedFilters: z
|
|
122
|
+
.record(z.string(), z.unknown())
|
|
123
|
+
.describe('The final filter map sent to the server (named + extraFilters).'),
|
|
124
|
+
});
|
|
125
|
+
export const brapiFindVariables = tool('brapi_find_variables', {
|
|
126
|
+
description: 'Find observation variables (traits) by name, trait class, ontology term, or free-text query. Free-text queries are ranked against the returned set and may resolve to ontology URIs when the server advertises them. Returns a dataset handle when the upstream total exceeds loadLimit.',
|
|
127
|
+
annotations: { readOnlyHint: true, openWorldHint: true },
|
|
128
|
+
input: z.object({
|
|
129
|
+
alias: AliasInput,
|
|
130
|
+
variables: z.array(z.string()).optional().describe('Filter by observationVariableDbIds.'),
|
|
131
|
+
variableNames: z
|
|
132
|
+
.array(z.string())
|
|
133
|
+
.optional()
|
|
134
|
+
.describe('Filter by exact observationVariableNames.'),
|
|
135
|
+
variablePUIs: z.array(z.string()).optional().describe('Filter by persistent ontology URIs.'),
|
|
136
|
+
traitClasses: z.array(z.string()).optional().describe('Filter by trait class.'),
|
|
137
|
+
ontologies: z.array(z.string()).optional().describe('Filter by ontologyDbIds.'),
|
|
138
|
+
studies: z.array(z.string()).optional().describe('Filter by studyDbIds.'),
|
|
139
|
+
methods: z.array(z.string()).optional().describe('Filter by methodDbIds.'),
|
|
140
|
+
scales: z.array(z.string()).optional().describe('Filter by scaleDbIds.'),
|
|
141
|
+
crop: z.string().optional().describe('Filter by common crop name (single value).'),
|
|
142
|
+
text: z
|
|
143
|
+
.string()
|
|
144
|
+
.optional()
|
|
145
|
+
.describe('Free-text query. Ranked client-side against variable names, synonyms, and descriptions.'),
|
|
146
|
+
loadLimit: LoadLimitInput,
|
|
147
|
+
extraFilters: ExtraFiltersInput,
|
|
148
|
+
}),
|
|
149
|
+
output: OutputSchema,
|
|
150
|
+
async handler(input, ctx) {
|
|
151
|
+
const registry = getServerRegistry();
|
|
152
|
+
const capabilities = getCapabilityRegistry();
|
|
153
|
+
const client = getBrapiClient();
|
|
154
|
+
const datasetStore = getDatasetStore();
|
|
155
|
+
const resolver = getOntologyResolver();
|
|
156
|
+
const config = getServerConfig();
|
|
157
|
+
const connection = await registry.get(ctx, input.alias ?? DEFAULT_ALIAS);
|
|
158
|
+
const capabilityLookup = {};
|
|
159
|
+
if (connection.resolvedAuth)
|
|
160
|
+
capabilityLookup.auth = connection.resolvedAuth;
|
|
161
|
+
await capabilities.ensure(connection.baseUrl, { service: 'variables', method: 'GET' }, ctx, capabilityLookup);
|
|
162
|
+
const profile = await capabilities.profile(connection.baseUrl, ctx, capabilityLookup);
|
|
163
|
+
const hasOntologyEndpoint = Boolean(profile.supported.ontologies);
|
|
164
|
+
const warnings = [];
|
|
165
|
+
const filters = mergeFilters({
|
|
166
|
+
observationVariableDbIds: input.variables,
|
|
167
|
+
observationVariableNames: input.variableNames,
|
|
168
|
+
observationVariablePUIs: input.variablePUIs,
|
|
169
|
+
traitClasses: input.traitClasses,
|
|
170
|
+
ontologyDbIds: input.ontologies,
|
|
171
|
+
studyDbId: input.studies?.[0],
|
|
172
|
+
methodDbIds: input.methods,
|
|
173
|
+
scaleDbIds: input.scales,
|
|
174
|
+
commonCropName: input.crop,
|
|
175
|
+
}, input.extraFilters, warnings);
|
|
176
|
+
if ((input.studies?.length ?? 0) > 1) {
|
|
177
|
+
warnings.push('BrAPI /variables accepts only one studyDbId per call; using the first value from `studies`.');
|
|
178
|
+
}
|
|
179
|
+
if (input.text && !hasOntologyEndpoint) {
|
|
180
|
+
warnings.push('Server does not expose /ontologies — free-text matching falls back to local substring + synonym matching on the returned rows.');
|
|
181
|
+
}
|
|
182
|
+
const loadLimit = input.loadLimit ?? config.loadLimit;
|
|
183
|
+
const firstPage = await loadInitialPage(client, connection, '/variables', filters, loadLimit, ctx);
|
|
184
|
+
const { fullRows, dataset: datasetMeta } = await maybeSpill({
|
|
185
|
+
firstPage,
|
|
186
|
+
client,
|
|
187
|
+
connection,
|
|
188
|
+
path: '/variables',
|
|
189
|
+
filters,
|
|
190
|
+
source: 'find_variables',
|
|
191
|
+
loadLimit,
|
|
192
|
+
ctx,
|
|
193
|
+
store: datasetStore,
|
|
194
|
+
});
|
|
195
|
+
let rankedResults = firstPage.rows;
|
|
196
|
+
let candidates = [];
|
|
197
|
+
if (input.text) {
|
|
198
|
+
candidates = resolver.match(input.text, fullRows, { limit: 10 });
|
|
199
|
+
if (candidates.length > 0) {
|
|
200
|
+
const orderedIds = new Set(candidates.map((c) => c.termId).filter(Boolean));
|
|
201
|
+
// Promote matched rows to the top of the in-context set.
|
|
202
|
+
const matched = [];
|
|
203
|
+
const rest = [];
|
|
204
|
+
for (const row of firstPage.rows) {
|
|
205
|
+
const pui = row.observationVariablePUI;
|
|
206
|
+
if (typeof pui === 'string' && orderedIds.has(pui))
|
|
207
|
+
matched.push(row);
|
|
208
|
+
else
|
|
209
|
+
rest.push(row);
|
|
210
|
+
}
|
|
211
|
+
rankedResults = [...matched, ...rest];
|
|
212
|
+
}
|
|
213
|
+
}
|
|
214
|
+
const distributions = {
|
|
215
|
+
ontologyDbId: computeDistribution(fullRows, (r) => asString(r.ontologyDbId)),
|
|
216
|
+
traitClass: computeDistribution(fullRows, (r) => {
|
|
217
|
+
const trait = r.trait;
|
|
218
|
+
if (!trait || typeof trait !== 'object')
|
|
219
|
+
return;
|
|
220
|
+
return asString(trait.traitClass);
|
|
221
|
+
}),
|
|
222
|
+
scaleName: computeDistribution(fullRows, (r) => {
|
|
223
|
+
const scale = r.scale;
|
|
224
|
+
if (!scale || typeof scale !== 'object')
|
|
225
|
+
return;
|
|
226
|
+
return asString(scale.scaleName);
|
|
227
|
+
}),
|
|
228
|
+
};
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229
|
+
const totalCount = firstPage.totalCount ?? firstPage.rows.length;
|
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230
|
+
const refinementHint = buildRefinementHint(totalCount, loadLimit, distributions);
|
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231
|
+
const result = {
|
|
232
|
+
alias: connection.alias,
|
|
233
|
+
results: rankedResults,
|
|
234
|
+
returnedCount: rankedResults.length,
|
|
235
|
+
totalCount,
|
|
236
|
+
hasMore: firstPage.hasMore,
|
|
237
|
+
distributions,
|
|
238
|
+
ontologyCandidates: candidates,
|
|
239
|
+
warnings,
|
|
240
|
+
appliedFilters: filters,
|
|
241
|
+
};
|
|
242
|
+
if (refinementHint)
|
|
243
|
+
result.refinementHint = refinementHint;
|
|
244
|
+
if (datasetMeta)
|
|
245
|
+
result.dataset = datasetMeta;
|
|
246
|
+
return result;
|
|
247
|
+
},
|
|
248
|
+
format: (result) => {
|
|
249
|
+
const lines = [];
|
|
250
|
+
lines.push(`# ${result.returnedCount} of ${result.totalCount} variables — \`${result.alias}\``);
|
|
251
|
+
lines.push('');
|
|
252
|
+
if (result.hasMore) {
|
|
253
|
+
lines.push(`⚠ More rows exist beyond the returned set. ${result.dataset ? `Full set persisted as dataset \`${result.dataset.datasetId}\`.` : 'Narrow filters or raise loadLimit.'}`);
|
|
254
|
+
lines.push('');
|
|
255
|
+
}
|
|
256
|
+
if (result.refinementHint) {
|
|
257
|
+
lines.push(`**Refinement hint:** ${result.refinementHint}`);
|
|
258
|
+
lines.push('');
|
|
259
|
+
}
|
|
260
|
+
lines.push(`Applied filters: \`${JSON.stringify(result.appliedFilters)}\``);
|
|
261
|
+
lines.push('');
|
|
262
|
+
if (result.ontologyCandidates.length > 0) {
|
|
263
|
+
lines.push('## Ontology candidates (ranked)');
|
|
264
|
+
for (const c of result.ontologyCandidates) {
|
|
265
|
+
const parts = [];
|
|
266
|
+
if (c.name)
|
|
267
|
+
parts.push(`**${c.name}**`);
|
|
268
|
+
if (c.termId)
|
|
269
|
+
parts.push(`termId=\`${c.termId}\``);
|
|
270
|
+
if (c.ontologyDbId)
|
|
271
|
+
parts.push(`ontology=${c.ontologyDbId}`);
|
|
272
|
+
parts.push(`source=${c.source}`);
|
|
273
|
+
if (c.description)
|
|
274
|
+
parts.push(`desc=${c.description}`);
|
|
275
|
+
if (c.synonyms?.length)
|
|
276
|
+
parts.push(`synonyms=${c.synonyms.join(',')}`);
|
|
277
|
+
lines.push(`- ${parts.join(' · ')}`);
|
|
278
|
+
}
|
|
279
|
+
lines.push('');
|
|
280
|
+
}
|
|
281
|
+
lines.push('## Distributions');
|
|
282
|
+
lines.push(renderDistributions(result.distributions) || '_No values to summarize._');
|
|
283
|
+
lines.push('');
|
|
284
|
+
lines.push('## Variables');
|
|
285
|
+
if (result.results.length === 0) {
|
|
286
|
+
lines.push('_No rows returned._');
|
|
287
|
+
}
|
|
288
|
+
else {
|
|
289
|
+
for (const v of result.results) {
|
|
290
|
+
const parts = [`**${v.observationVariableName ?? v.observationVariableDbId}**`];
|
|
291
|
+
parts.push(`id=\`${v.observationVariableDbId}\``);
|
|
292
|
+
if (v.observationVariablePUI)
|
|
293
|
+
parts.push(`pui=${v.observationVariablePUI}`);
|
|
294
|
+
if (v.ontologyDbId)
|
|
295
|
+
parts.push(`ontology=${v.ontologyDbId}`);
|
|
296
|
+
if (v.ontologyName)
|
|
297
|
+
parts.push(`ontologyName=${v.ontologyName}`);
|
|
298
|
+
if (v.commonCropName)
|
|
299
|
+
parts.push(`crop=${v.commonCropName}`);
|
|
300
|
+
if (v.trait?.traitName)
|
|
301
|
+
parts.push(`trait=${v.trait.traitName}`);
|
|
302
|
+
if (v.trait?.traitDbId)
|
|
303
|
+
parts.push(`traitDbId=${v.trait.traitDbId}`);
|
|
304
|
+
if (v.trait?.traitClass)
|
|
305
|
+
parts.push(`class=${v.trait.traitClass}`);
|
|
306
|
+
if (v.trait?.description)
|
|
307
|
+
parts.push(`desc=${v.trait.description}`);
|
|
308
|
+
if (v.trait?.synonyms?.length)
|
|
309
|
+
parts.push(`synonyms=${v.trait.synonyms.join(',')}`);
|
|
310
|
+
if (v.scale?.scaleName)
|
|
311
|
+
parts.push(`scale=${v.scale.scaleName}`);
|
|
312
|
+
if (v.scale?.scaleDbId)
|
|
313
|
+
parts.push(`scaleDbId=${v.scale.scaleDbId}`);
|
|
314
|
+
if (v.scale?.dataType)
|
|
315
|
+
parts.push(`dataType=${v.scale.dataType}`);
|
|
316
|
+
if (v.method?.methodName)
|
|
317
|
+
parts.push(`method=${v.method.methodName}`);
|
|
318
|
+
if (v.method?.methodDbId)
|
|
319
|
+
parts.push(`methodDbId=${v.method.methodDbId}`);
|
|
320
|
+
lines.push(`- ${parts.join(' · ')}`);
|
|
321
|
+
}
|
|
322
|
+
}
|
|
323
|
+
if (result.dataset) {
|
|
324
|
+
lines.push('');
|
|
325
|
+
lines.push('## Dataset handle');
|
|
326
|
+
lines.push(...renderDatasetHandle(result.dataset));
|
|
327
|
+
}
|
|
328
|
+
if (result.warnings.length > 0) {
|
|
329
|
+
lines.push('');
|
|
330
|
+
lines.push('## Warnings');
|
|
331
|
+
for (const w of result.warnings)
|
|
332
|
+
lines.push(`- ${w}`);
|
|
333
|
+
}
|
|
334
|
+
return [{ type: 'text', text: lines.join('\n') }];
|
|
335
|
+
},
|
|
336
|
+
});
|
|
337
|
+
//# sourceMappingURL=brapi-find-variables.tool.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
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/**
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* @fileoverview `brapi_find_variants` — find variant records by variant set,
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* reference, or genomic region. Standard find_* pattern — distributions +
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* dataset spillover. Note: the BrAPI filter catalog uses `start` / `end` as
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* single scalars (1-based inclusive / exclusive) per the spec.
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*
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* @module mcp-server/tools/definitions/brapi-find-variants.tool
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*/
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import { z } from '@cyanheads/mcp-ts-core';
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export declare const brapiFindVariants: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
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alias: z.ZodOptional<z.ZodString>;
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variantSets: z.ZodOptional<z.ZodArray<z.ZodString>>;
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variants: z.ZodOptional<z.ZodArray<z.ZodString>>;
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references: z.ZodOptional<z.ZodArray<z.ZodString>>;
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referenceName: z.ZodOptional<z.ZodString>;
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start: z.ZodOptional<z.ZodNumber>;
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end: z.ZodOptional<z.ZodNumber>;
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loadLimit: z.ZodOptional<z.ZodNumber>;
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extraFilters: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
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}, z.core.$strip>, z.ZodObject<{
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alias: z.ZodString;
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results: z.ZodArray<z.ZodObject<{
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variantDbId: z.ZodString;
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24
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variantNames: z.ZodOptional<z.ZodArray<z.ZodString>>;
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+
variantSetDbId: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodArray<z.ZodString>]>>;
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26
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+
variantSetDbIds: z.ZodOptional<z.ZodArray<z.ZodString>>;
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27
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+
variantType: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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28
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+
referenceBases: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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29
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+
alternateBases: z.ZodOptional<z.ZodNullable<z.ZodArray<z.ZodString>>>;
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30
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+
referenceName: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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31
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+
start: z.ZodOptional<z.ZodNullable<z.ZodNumber>>;
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32
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+
end: z.ZodOptional<z.ZodNullable<z.ZodNumber>>;
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33
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+
filtersPassed: z.ZodOptional<z.ZodNullable<z.ZodBoolean>>;
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34
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+
filtersApplied: z.ZodOptional<z.ZodNullable<z.ZodBoolean>>;
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35
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+
filtersFailed: z.ZodOptional<z.ZodNullable<z.ZodArray<z.ZodString>>>;
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36
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+
}, z.core.$loose>>;
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37
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+
returnedCount: z.ZodNumber;
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38
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+
totalCount: z.ZodNumber;
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39
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+
hasMore: z.ZodBoolean;
|
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40
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+
distributions: z.ZodObject<{
|
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41
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+
variantType: z.ZodRecord<z.ZodString, z.ZodNumber>;
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42
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+
referenceName: z.ZodRecord<z.ZodString, z.ZodNumber>;
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43
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+
variantSetDbId: z.ZodRecord<z.ZodString, z.ZodNumber>;
|
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44
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+
}, z.core.$strip>;
|
|
45
|
+
refinementHint: z.ZodOptional<z.ZodString>;
|
|
46
|
+
dataset: z.ZodOptional<z.ZodObject<{
|
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47
|
+
datasetId: z.ZodString;
|
|
48
|
+
rowCount: z.ZodNumber;
|
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49
|
+
sizeBytes: z.ZodNumber;
|
|
50
|
+
columns: z.ZodArray<z.ZodString>;
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51
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+
createdAt: z.ZodString;
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52
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+
expiresAt: z.ZodString;
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53
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+
truncated: z.ZodOptional<z.ZodBoolean>;
|
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54
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+
maxRows: z.ZodOptional<z.ZodNumber>;
|
|
55
|
+
}, z.core.$strip>>;
|
|
56
|
+
warnings: z.ZodArray<z.ZodString>;
|
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57
|
+
appliedFilters: z.ZodRecord<z.ZodString, z.ZodUnknown>;
|
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58
|
+
}, z.core.$strip>, undefined>;
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59
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+
//# sourceMappingURL=brapi-find-variants.tool.d.ts.map
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@@ -0,0 +1 @@
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1
|
+
{"version":3,"file":"brapi-find-variants.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-variants.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA0GjD,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;6BAwJ5B,CAAC"}
|