@cyanheads/brapi-mcp-server 0.3.5

package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.js

@@ -0,0 +1,574 @@
+/**
+ * @fileoverview `brapi_submit_observations` — submit new or updated
+ * observations for a study. Two-phase write: `mode: 'preview'` validates rows
+ * against the study's observation variables and returns a routing breakdown
+ * (POST for new rows, PUT for rows carrying `observationDbId`); `mode: 'apply'`
+ * elicits confirmation when supported, fans the rows out to POST + PUT in
+ * parallel, then verifies the post-state with a cheap `pageSize=0` count.
+ * Additive write — no observation is destroyed by this tool.
+ *
+ * @module mcp-server/tools/definitions/brapi-submit-observations.tool
+ */
+import { tool, z } from '@cyanheads/mcp-ts-core';
+import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
+import { getBrapiClient } from '../../../services/brapi-client/index.js';
+import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
+import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
+import { AliasInput, buildRequestOptions, extractRows, isUpstreamNotFound, } from '../shared/find-helpers.js';
+const ObservationRowSchema = z
+    .object({
+    observationDbId: z
+        .string()
+        .min(1)
+        .optional()
+        .describe('Server-assigned identifier of an existing observation. When present, the row updates that observation; when absent, the row creates a new one.'),
+    observationUnitDbId: z
+        .string()
+        .min(1)
+        .describe('FK to the observation unit (plot / plant / sample) the value applies to. Required.'),
+    observationVariableDbId: z
+        .string()
+        .min(1)
+        .describe('FK to the observation variable (trait) being measured. Required.'),
+    value: z
+        .string()
+        .describe('Recorded measurement value, stringified per BrAPI convention. Empty strings are flagged as warnings.'),
+    collector: z.string().optional().describe('Name or ID of the person who collected the value.'),
+    observationTimeStamp: z
+        .string()
+        .optional()
+        .describe('ISO 8601 timestamp the observation was taken.'),
+    season: z
+        .object({
+        seasonDbId: z.string().optional().describe('Server-side season identifier.'),
+        year: z.string().optional().describe('Calendar year (e.g. "2024").'),
+        season: z.string().optional().describe('Season label (e.g. "wet", "dry", "Q1").'),
+    })
+        .optional()
+        .describe('Season block. Most servers tolerate either seasonDbId or year+label.'),
+    geoCoordinates: z
+        .object({
+        type: z.literal('Feature').describe('GeoJSON feature type (always "Feature").'),
+        geometry: z
+            .object({
+            type: z.literal('Point').describe('GeoJSON geometry type (always "Point").'),
+            coordinates: z
+                .array(z.number())
+                .length(2)
+                .describe('[longitude, latitude] in WGS84 decimal degrees.'),
+        })
+            .describe('GeoJSON point geometry.'),
+    })
+        .optional()
+        .describe('Optional GeoJSON Feature carrying lon/lat for this observation.'),
+})
+    .describe('One observation row. observationDbId presence routes to PUT vs POST.');
+const PerRowWarningSchema = z
+    .object({
+    rowIndex: z.number().int().nonnegative().describe('Zero-based index of the row in the input.'),
+    observationVariableDbId: z
+        .string()
+        .optional()
+        .describe('Variable DbId on the row, when present.'),
+    observationUnitDbId: z.string().optional().describe('Unit DbId on the row, when present.'),
+    warning: z.string().describe('What was unusual about this row.'),
+})
+    .describe('Per-row validation warning — does not abort the batch.');
+const PreviewBranchSchema = z
+    .object({
+    mode: z.literal('preview').describe('Discriminator — `preview` reports validation only.'),
+    studyDbId: z.string().describe('Study the rows belong to.'),
+    studyName: z.string().optional().describe('Display name of the study, when available.'),
+    valid: z.number().int().nonnegative().describe('Rows that pass per-row validation.'),
+    invalid: z
+        .number()
+        .int()
+        .nonnegative()
+        .describe('Rows with structural problems severe enough to skip on apply (missing required FKs, etc.).'),
+    routing: z
+        .object({
+        postCount: z
+            .number()
+            .int()
+            .nonnegative()
+            .describe('Rows that would be POSTed (no observationDbId).'),
+        putCount: z
+            .number()
+            .int()
+            .nonnegative()
+            .describe('Rows that would be PUT (observationDbId present).'),
+    })
+        .describe('How rows would split across POST vs PUT.'),
+    perRowWarnings: z
+        .array(PerRowWarningSchema)
+        .describe('Per-row notes — unknown variables, empty values, missing IDs.'),
+    knownVariableCount: z
+        .number()
+        .int()
+        .nonnegative()
+        .describe('Count of variables exposed by the study (used to validate rows).'),
+})
+    .describe('Preview output — no writes have occurred.');
+const ApplyBranchSchema = z
+    .object({
+    mode: z.literal('apply').describe('Discriminator — `apply` reports post-write state.'),
+    studyDbId: z.string().describe('Study the rows belong to.'),
+    studyName: z.string().optional().describe('Display name of the study, when available.'),
+    posted: z
+        .array(z
+        .object({
+        observationDbId: z
+            .string()
+            .optional()
+            .describe('Server-assigned observationDbId (when echoed in the response).'),
+        observationUnitDbId: z.string().optional().describe('FK echoed from the server.'),
+        observationVariableDbId: z.string().optional().describe('FK echoed from the server.'),
+        value: z.string().optional().describe('Value echoed from the server.'),
+    })
+        .describe('One created observation as echoed by the server.'))
+        .describe('Observations created by the call (POST results).'),
+    updated: z
+        .array(z
+        .object({
+        observationDbId: z.string().describe('Existing observationDbId that was updated.'),
+        observationUnitDbId: z.string().optional().describe('FK echoed from the server.'),
+        observationVariableDbId: z.string().optional().describe('FK echoed from the server.'),
+        value: z.string().optional().describe('New value echoed from the server.'),
+    })
+        .describe('One updated observation as echoed by the server.'))
+        .describe('Observations updated by the call (PUT results).'),
+    studyObservationCount: z
+        .number()
+        .int()
+        .nonnegative()
+        .optional()
+        .describe('Total observations recorded against the study after the write (cheap probe).'),
+    latestObservationTimestamp: z
+        .string()
+        .optional()
+        .describe('Most recent `observationTimeStamp` across the rows accepted in this call.'),
+    perRowWarnings: z
+        .array(PerRowWarningSchema)
+        .describe('Per-row notes — unknown variables, empty values, missing IDs.'),
+})
+    .describe('Apply output — writes succeeded, post-state attached.');
+const OutputSchema = z.object({
+    alias: z.string().describe('Alias of the registered BrAPI connection the call used.'),
+    result: z
+        .discriminatedUnion('mode', [PreviewBranchSchema, ApplyBranchSchema])
+        .describe('Mode-specific result — discriminated by `mode`.'),
+});
+const SUBMIT_ERRORS = [
+    {
+        reason: 'observations_unsupported',
+        code: JsonRpcErrorCode.ValidationError,
+        when: 'BrAPI server does not advertise /observations',
+        recovery: 'Run brapi_server_info to inspect the advertised endpoints, or call brapi_connect with a different alias for a server that exposes /observations.',
+    },
+    {
+        reason: 'study_not_found',
+        code: JsonRpcErrorCode.NotFound,
+        when: 'Upstream returned no study record for the requested studyDbId',
+        recovery: 'Verify the studyDbId on the target server, or run brapi_find_studies to discover valid IDs before retrying.',
+    },
+    {
+        reason: 'post_unsupported',
+        code: JsonRpcErrorCode.ValidationError,
+        when: 'Server does not advertise POST on /observations but new rows were submitted',
+        recovery: 'Remove the rows that lack observationDbId (those are the new rows) before retrying, or connect to a different server that supports POST on /observations.',
+    },
+    {
+        reason: 'put_unsupported',
+        code: JsonRpcErrorCode.ValidationError,
+        when: 'Server does not advertise PUT on /observations but update rows were submitted',
+        recovery: 'Connect to a different server that supports PUT on /observations — dropping observationDbId would route as POST and create duplicates instead of updating the existing rows.',
+    },
+    {
+        reason: 'elicit_unavailable',
+        code: JsonRpcErrorCode.Forbidden,
+        when: 'Apply mode invoked but client does not expose ctx.elicit and force was false',
+        recovery: 'Set force=true only with explicit user authorization, or use a client that supports elicitation.',
+    },
+    {
+        reason: 'user_declined',
+        code: JsonRpcErrorCode.Forbidden,
+        when: 'User declined the elicitation prompt for the apply write',
+        recovery: 'Re-run the tool when the user is ready to confirm the write.',
+    },
+];
+export const brapiSubmitObservations = tool('brapi_submit_observations', {
+    description: 'Submit observations for a study. Default mode `preview` validates rows against the study variables and returns a routing breakdown without writing. Mode `apply` elicits confirmation when supported, then creates new rows or updates existing ones based on observationDbId presence. Additive only — no observation is destroyed.',
+    annotations: {
+        readOnlyHint: false,
+        destructiveHint: false,
+        idempotentHint: true,
+        openWorldHint: true,
+    },
+    errors: SUBMIT_ERRORS,
+    input: z.object({
+        alias: AliasInput,
+        studyDbId: z.string().min(1).describe('Study the observations are submitted against.'),
+        observations: z
+            .array(ObservationRowSchema)
+            .min(1)
+            .max(5_000)
+            .describe('1 – 5000 observation rows. Mixed POST + PUT routing is supported.'),
+        mode: z
+            .enum(['preview', 'apply'])
+            .default('preview')
+            .describe('`preview` (default) validates only; `apply` writes after eliciting confirmation when supported.'),
+        force: z
+            .boolean()
+            .default(false)
+            .describe('Bypass elicitation in apply mode. Use only when the client lacks ctx.elicit support; the agent must have explicit user authorization to apply.'),
+    }),
+    output: OutputSchema,
+    auth: ['brapi:write:observations'],
+    async handler(input, ctx) {
+        const registry = getServerRegistry();
+        const capabilities = getCapabilityRegistry();
+        const client = getBrapiClient();
+        const connection = await registry.get(ctx, input.alias ?? DEFAULT_ALIAS);
+        const capabilityLookup = {};
+        if (connection.resolvedAuth)
+            capabilityLookup.auth = connection.resolvedAuth;
+        const profile = await capabilities.profile(connection.baseUrl, ctx, capabilityLookup);
+        const obsDescriptor = profile.supported.observations;
+        const supportsPost = obsDescriptor?.methods?.includes('POST') ?? false;
+        const supportsPut = obsDescriptor?.methods?.includes('PUT') ?? false;
+        if (!obsDescriptor) {
+            throw ctx.fail('observations_unsupported', `BrAPI server at ${connection.baseUrl} does not advertise '/observations' in /calls. Cannot submit observations.`, { baseUrl: connection.baseUrl, ...ctx.recoveryFor('observations_unsupported') });
+        }
+        const studyLookup = await fetchStudyExistence(input.studyDbId, connection, client, ctx);
+        if (!studyLookup.exists) {
+            throw ctx.fail('study_not_found', `Study '${input.studyDbId}' not found on ${connection.baseUrl}.`, {
+                studyDbId: input.studyDbId,
+                baseUrl: connection.baseUrl,
+                ...ctx.recoveryFor('study_not_found'),
+            });
+        }
+        const studyName = studyLookup.studyName;
+        const knownVariables = await fetchStudyVariables(input.studyDbId, connection, client, ctx);
+        const decisions = [];
+        const perRowWarnings = [];
+        let valid = 0;
+        let invalid = 0;
+        let postCount = 0;
+        let putCount = 0;
+        for (const [i, row] of input.observations.entries()) {
+            const rowWarnings = [];
+            let structurallyValid = true;
+            if (!row.observationUnitDbId) {
+                rowWarnings.push('observationUnitDbId is required.');
+                structurallyValid = false;
+            }
+            if (!row.observationVariableDbId) {
+                rowWarnings.push('observationVariableDbId is required.');
+                structurallyValid = false;
+            }
+            if (row.value === '') {
+                rowWarnings.push('value is empty — submitted as an empty string.');
+            }
+            if (row.observationVariableDbId &&
+                knownVariables.size > 0 &&
+                !knownVariables.has(row.observationVariableDbId)) {
+                rowWarnings.push(`observationVariableDbId '${row.observationVariableDbId}' is not exposed by study '${input.studyDbId}'. The server may reject the row.`);
+            }
+            const decision = {
+                rowIndex: i,
+                observationDbId: row.observationDbId,
+                warnings: rowWarnings,
+            };
+            decisions.push(decision);
+            if (structurallyValid) {
+                valid++;
+                if (row.observationDbId)
+                    putCount++;
+                else
+                    postCount++;
+            }
+            else {
+                invalid++;
+            }
+            for (const warning of rowWarnings) {
+                const entry = { rowIndex: i, warning };
+                if (row.observationVariableDbId)
+                    entry.observationVariableDbId = row.observationVariableDbId;
+                if (row.observationUnitDbId)
+                    entry.observationUnitDbId = row.observationUnitDbId;
+                perRowWarnings.push(entry);
+            }
+        }
+        if (input.mode === 'preview') {
+            const branch = {
+                mode: 'preview',
+                studyDbId: input.studyDbId,
+                valid,
+                invalid,
+                routing: { postCount, putCount },
+                perRowWarnings,
+                knownVariableCount: knownVariables.size,
+            };
+            if (studyName)
+                branch.studyName = studyName;
+            return { alias: connection.alias, result: branch };
+        }
+        if (postCount > 0 && !supportsPost) {
+            throw ctx.fail('post_unsupported', `Server does not advertise POST on /observations. ${postCount} new row(s) cannot be created.`, { baseUrl: connection.baseUrl, postCount, ...ctx.recoveryFor('post_unsupported') });
+        }
+        if (putCount > 0 && !supportsPut) {
+            throw ctx.fail('put_unsupported', `Server does not advertise PUT on /observations. ${putCount} update row(s) cannot be applied.`, { baseUrl: connection.baseUrl, putCount, ...ctx.recoveryFor('put_unsupported') });
+        }
+        await confirmApply(ctx, {
+            studyDbId: input.studyDbId,
+            studyName,
+            valid,
+            invalid,
+            postCount,
+            putCount,
+            force: input.force,
+        });
+        const validRows = decisions.flatMap((d) => {
+            if (d.warnings.some(isStructural))
+                return [];
+            const row = input.observations[d.rowIndex];
+            return row ? [row] : [];
+        });
+        const postRows = validRows.filter((r) => !r.observationDbId);
+        const putRows = validRows.filter((r) => r.observationDbId);
+        const [postedEnv, updatedEnv] = await Promise.all([
+            postRows.length > 0
+                ? client.post(connection.baseUrl, '/observations', postRows, ctx, buildRequestOptions(connection))
+                : Promise.resolve(undefined),
+            putRows.length > 0
+                ? client.put(connection.baseUrl, '/observations', buildPutBody(putRows), ctx, buildRequestOptions(connection))
+                : Promise.resolve(undefined),
+        ]);
+        const posted = postedEnv ? extractObservationRows(postedEnv.result) : [];
+        const updated = updatedEnv
+            ? extractObservationRows(updatedEnv.result).filter((r) => typeof r.observationDbId === 'string')
+            : [];
+        const studyObservationCount = await fetchStudyObservationCount(input.studyDbId, connection, client, ctx);
+        const latestTimestamp = pickLatestTimestamp(input.observations);
+        const branch = {
+            mode: 'apply',
+            studyDbId: input.studyDbId,
+            posted,
+            updated,
+            perRowWarnings,
+        };
+        if (studyName)
+            branch.studyName = studyName;
+        if (studyObservationCount !== undefined)
+            branch.studyObservationCount = studyObservationCount;
+        if (latestTimestamp)
+            branch.latestObservationTimestamp = latestTimestamp;
+        return { alias: connection.alias, result: branch };
+    },
+    format: (output) => {
+        const lines = [];
+        if (output.result.mode === 'preview') {
+            const r = output.result;
+            lines.push(`# Preview · study \`${r.studyDbId}\`${r.studyName ? ` (${r.studyName})` : ''} — \`${output.alias}\``);
+            lines.push('');
+            lines.push(`- valid: ${r.valid}`);
+            lines.push(`- invalid: ${r.invalid}`);
+            lines.push(`- routing: POST ${r.routing.postCount} · PUT ${r.routing.putCount}`);
+            lines.push(`- knownVariableCount: ${r.knownVariableCount}`);
+            lines.push('- mode: preview · no writes performed');
+            if (r.perRowWarnings.length > 0) {
+                lines.push('');
+                lines.push('## Per-row warnings');
+                for (const w of r.perRowWarnings) {
+                    const id = w.observationVariableDbId ? ` var=\`${w.observationVariableDbId}\`` : '';
+                    const unit = w.observationUnitDbId ? ` unit=\`${w.observationUnitDbId}\`` : '';
+                    lines.push(`- row ${w.rowIndex}:${id}${unit} — ${w.warning}`);
+                }
+            }
+        }
+        else {
+            const r = output.result;
+            lines.push(`# Apply · study \`${r.studyDbId}\`${r.studyName ? ` (${r.studyName})` : ''} — \`${output.alias}\``);
+            lines.push('');
+            lines.push(`- posted: ${r.posted.length}`);
+            lines.push(`- updated: ${r.updated.length}`);
+            lines.push(`- studyObservationCount: ${r.studyObservationCount ?? '—'}`);
+            lines.push(`- latestObservationTimestamp: ${r.latestObservationTimestamp ?? '—'}`);
+            lines.push('- mode: apply');
+            if (r.posted.length > 0) {
+                lines.push('');
+                lines.push('## Posted (new observations)');
+                for (const p of r.posted) {
+                    const parts = [];
+                    if (p.observationDbId)
+                        parts.push(`id=\`${p.observationDbId}\``);
+                    if (p.observationVariableDbId)
+                        parts.push(`var=${p.observationVariableDbId}`);
+                    if (p.observationUnitDbId)
+                        parts.push(`unit=${p.observationUnitDbId}`);
+                    if (p.value !== undefined)
+                        parts.push(`value=${p.value}`);
+                    lines.push(`- ${parts.join(' · ') || '_(server returned no fields)_'}`);
+                }
+            }
+            if (r.updated.length > 0) {
+                lines.push('');
+                lines.push('## Updated');
+                for (const u of r.updated) {
+                    const parts = [`id=\`${u.observationDbId}\``];
+                    if (u.observationVariableDbId)
+                        parts.push(`var=${u.observationVariableDbId}`);
+                    if (u.observationUnitDbId)
+                        parts.push(`unit=${u.observationUnitDbId}`);
+                    if (u.value !== undefined)
+                        parts.push(`value=${u.value}`);
+                    lines.push(`- ${parts.join(' · ')}`);
+                }
+            }
+            if (r.perRowWarnings.length > 0) {
+                lines.push('');
+                lines.push('## Per-row warnings');
+                for (const w of r.perRowWarnings) {
+                    const id = w.observationVariableDbId ? ` var=\`${w.observationVariableDbId}\`` : '';
+                    const unit = w.observationUnitDbId ? ` unit=\`${w.observationUnitDbId}\`` : '';
+                    lines.push(`- row ${w.rowIndex}:${id}${unit} — ${w.warning}`);
+                }
+            }
+        }
+        return [{ type: 'text', text: lines.join('\n') }];
+    },
+});
+function isStructural(warning) {
+    return warning.endsWith('is required.');
+}
+async function confirmApply(ctx, input) {
+    if (input.force)
+        return;
+    if (!ctx.elicit) {
+        throw ctx.fail('elicit_unavailable', 'Apply mode requires user confirmation. The MCP client does not expose elicitation, so set `force: true` to bypass — but only with explicit user authorization for this write.', {
+            studyDbId: input.studyDbId,
+            valid: input.valid,
+            invalid: input.invalid,
+            ...ctx.recoveryFor('elicit_unavailable'),
+        });
+    }
+    const message = [
+        `Apply ${input.valid} observation row(s) to study \`${input.studyDbId}\`${input.studyName ? ` (${input.studyName})` : ''}?`,
+        `POST ${input.postCount} new · PUT ${input.putCount} update · ${input.invalid} skipped (structural errors).`,
+    ].join('\n');
+    const result = await ctx.elicit(message, z.object({
+        confirm: z
+            .boolean()
+            .describe('Set to true to commit the writes; false to abort with no side effects.'),
+    }));
+    const confirmed = typeof result.data === 'object' &&
+        result.data !== null &&
+        result.data.confirm === true;
+    if (result.action !== 'accept' || !confirmed) {
+        throw ctx.fail('user_declined', 'User declined to apply observation writes.', {
+            studyDbId: input.studyDbId,
+            action: result.action,
+            ...ctx.recoveryFor('user_declined'),
+        });
+    }
+}
+async function fetchStudyVariables(studyDbId, connection, client, ctx) {
+    try {
+        const env = await client.get(connection.baseUrl, '/variables', ctx, buildRequestOptions(connection, { studyDbId, pageSize: 1000 }));
+        const known = new Set();
+        const rows = extractRows(env.result);
+        for (const row of rows) {
+            const id = row.observationVariableDbId;
+            if (typeof id === 'string' && id.length > 0)
+                known.add(id);
+        }
+        return known;
+    }
+    catch (err) {
+        ctx.log.debug('Could not load study variables for validation', {
+            studyDbId,
+            error: err instanceof Error ? err.message : String(err),
+        });
+        return new Set();
+    }
+}
+async function fetchStudyExistence(studyDbId, connection, client, ctx) {
+    try {
+        const env = await client.get(connection.baseUrl, `/studies/${encodeURIComponent(studyDbId)}`, ctx, buildRequestOptions(connection));
+        const study = env.result;
+        if (!study || typeof study !== 'object' || !study.studyDbId) {
+            return { exists: false };
+        }
+        const name = study.studyName;
+        return typeof name === 'string' && name.length > 0
+            ? { exists: true, studyName: name }
+            : { exists: true };
+    }
+    catch (err) {
+        if (isUpstreamNotFound(err))
+            return { exists: false };
+        // Transient errors (timeouts, 5xx) — propagate so the user sees the real cause.
+        throw err;
+    }
+}
+async function fetchStudyObservationCount(studyDbId, connection, client, ctx) {
+    try {
+        const env = await client.get(connection.baseUrl, '/observations', ctx, buildRequestOptions(connection, { studyDbIds: [studyDbId], pageSize: 1 }));
+        const total = env.metadata?.pagination?.totalCount;
+        return typeof total === 'number' ? total : undefined;
+    }
+    catch {
+        return;
+    }
+}
+function buildPutBody(rows) {
+    const map = {};
+    for (const row of rows) {
+        if (!row.observationDbId)
+            continue;
+        map[row.observationDbId] = row;
+    }
+    return map;
+}
+function extractObservationRows(result) {
+    if (!result)
+        return [];
+    let rows;
+    if (Array.isArray(result)) {
+        rows = result;
+    }
+    else if (typeof result === 'object' && Array.isArray(result.data)) {
+        rows = result.data;
+    }
+    else {
+        return [];
+    }
+    const out = [];
+    for (const entry of rows) {
+        if (typeof entry !== 'object' || entry === null)
+            continue;
+        const record = entry;
+        const item = {};
+        if (typeof record.observationDbId === 'string')
+            item.observationDbId = record.observationDbId;
+        if (typeof record.observationUnitDbId === 'string')
+            item.observationUnitDbId = record.observationUnitDbId;
+        if (typeof record.observationVariableDbId === 'string')
+            item.observationVariableDbId = record.observationVariableDbId;
+        if (typeof record.value === 'string')
+            item.value = record.value;
+        out.push(item);
+    }
+    return out;
+}
+function pickLatestTimestamp(rows) {
+    let best;
+    for (const row of rows) {
+        if (typeof row.observationTimeStamp !== 'string')
+            continue;
+        if (!best || row.observationTimeStamp > best)
+            best = row.observationTimeStamp;
+    }
+    return best;
+}
+//# sourceMappingURL=brapi-submit-observations.tool.js.map

package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.js.map

@@ -0,0 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.d.ts

@@ -0,0 +1,52 @@
+/**
+ * @fileoverview `brapi_walk_pedigree` — walk germplasm ancestry or
+ * descendancy as a DAG. BrAPI only exposes direct parents / direct progeny
+ * per call, so we BFS outward from each root up to `maxDepth`, deduplicate
+ * nodes (cultivars may appear on multiple paths), and break cycles.
+ * Response includes traversal stats so the agent can see how the walk
+ * terminated without re-running the tool.
+ *
+ * @module mcp-server/tools/definitions/brapi-walk-pedigree.tool
+ */
+import { z } from '@cyanheads/mcp-ts-core';
+export declare const brapiWalkPedigree: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
+    germplasmDbIds: z.ZodArray<z.ZodString>;
+    direction: z.ZodDefault<z.ZodEnum<{
+        ancestors: "ancestors";
+        descendants: "descendants";
+        both: "both";
+    }>>;
+    maxDepth: z.ZodDefault<z.ZodNumber>;
+    alias: z.ZodOptional<z.ZodString>;
+}, z.core.$strip>, z.ZodObject<{
+    alias: z.ZodString;
+    direction: z.ZodEnum<{
+        ancestors: "ancestors";
+        descendants: "descendants";
+        both: "both";
+    }>;
+    maxDepth: z.ZodNumber;
+    nodes: z.ZodArray<z.ZodObject<{
+        germplasmDbId: z.ZodString;
+        germplasmName: z.ZodOptional<z.ZodString>;
+        depth: z.ZodNumber;
+        isRoot: z.ZodBoolean;
+    }, z.core.$strip>>;
+    edges: z.ZodArray<z.ZodObject<{
+        from: z.ZodString;
+        to: z.ZodString;
+        relationship: z.ZodEnum<{
+            parent: "parent";
+            child: "child";
+        }>;
+        parentType: z.ZodOptional<z.ZodString>;
+    }, z.core.$strip>>;
+    depthReached: z.ZodNumber;
+    rootCount: z.ZodNumber;
+    leafCount: z.ZodNumber;
+    cycleCount: z.ZodNumber;
+    deadEndCount: z.ZodNumber;
+    truncated: z.ZodBoolean;
+    warnings: z.ZodArray<z.ZodString>;
+}, z.core.$strip>, undefined>;
+//# sourceMappingURL=brapi-walk-pedigree.tool.d.ts.map

package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.d.ts.map

@@ -0,0 +1 @@
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