@cyanheads/brapi-mcp-server 0.3.5

package/dist/services/capability-registry/capability-registry.js

@@ -0,0 +1,234 @@
+/**
+ * @fileoverview Capability profile loader + cache for BrAPI servers. Pulls
+ * `/serverinfo`, `/calls`, and `/commoncropnames` on first use (or refresh),
+ * normalizes the shape, and stores the result in tenant-scoped state. Tools
+ * consult this before routing requests — if a required endpoint isn't in the
+ * server's capability set, the service surfaces a clear `ValidationError`
+ * instead of letting the call fail downstream.
+ *
+ * @module services/capability-registry/capability-registry
+ */
+import { validationError } from '@cyanheads/mcp-ts-core/errors';
+import { getBrapiClient, } from '../../services/brapi-client/index.js';
+const STATE_KEY_PREFIX = 'brapi/capability/';
+export class CapabilityRegistry {
+    serverConfig;
+    client;
+    constructor(serverConfig, client = getBrapiClient) {
+        this.serverConfig = serverConfig;
+        this.client = client;
+    }
+    /**
+     * Load the capability profile for a base URL. Returns the cached profile
+     * when present and not expired; otherwise fetches fresh and caches it.
+     */
+    async profile(baseUrl, ctx, options = {}) {
+        const key = this.cacheKey(baseUrl);
+        if (!options.forceRefresh) {
+            const cached = await ctx.state.get(key);
+            if (cached)
+                return cached;
+        }
+        const fresh = await this.fetchProfile(baseUrl, ctx, options);
+        await ctx.state.set(key, fresh, {
+            ttl: this.serverConfig.referenceCacheTtlSeconds,
+        });
+        return fresh;
+    }
+    /**
+     * Throw a `ValidationError` if the requested endpoint (service + optional
+     * HTTP method) is not in the server's capability set. Tools call this
+     * before routing requests so missing-capability errors surface early with
+     * a clear recovery hint.
+     */
+    async ensure(baseUrl, probe, ctx, options = {}) {
+        const profile = await this.profile(baseUrl, ctx, options);
+        const descriptor = profile.supported[probe.service];
+        if (!descriptor) {
+            throw validationError(`BrAPI server at ${baseUrl} does not advertise '${probe.service}' in /calls. Check brapi_server_info for the full capability list.`, {
+                baseUrl,
+                missingService: probe.service,
+                supportedCount: Object.keys(profile.supported).length,
+            });
+        }
+        if (probe.method && descriptor.methods && !descriptor.methods.includes(probe.method)) {
+            throw validationError(`BrAPI server at ${baseUrl} supports '${probe.service}' but not the ${probe.method} method.`, {
+                baseUrl,
+                service: probe.service,
+                requestedMethod: probe.method,
+                supportedMethods: descriptor.methods,
+            });
+        }
+        return descriptor;
+    }
+    /** Drop the cached profile for a base URL (e.g. on explicit reconnect). */
+    async invalidate(baseUrl, ctx) {
+        await ctx.state.delete(this.cacheKey(baseUrl));
+    }
+    async fetchProfile(baseUrl, ctx, options) {
+        const client = this.client();
+        const requestOptions = buildRequestOptions(options.auth);
+        const serverInfoEnv = await client.get(baseUrl, '/serverinfo', ctx, requestOptions);
+        const embeddedCalls = serverInfoEnv.result?.calls;
+        const calls = embeddedCalls?.length
+            ? embeddedCalls
+            : await this.fetchCallsFallback(baseUrl, ctx, options.auth);
+        const crops = await this.fetchCrops(baseUrl, ctx, options.auth);
+        const supported = indexCalls(calls);
+        const server = normalizeIdentity(serverInfoEnv.result, calls);
+        return {
+            baseUrl,
+            server,
+            supported,
+            crops,
+            fetchedAt: new Date().toISOString(),
+        };
+    }
+    /**
+     * `/calls` fallback — some servers don't embed calls in `/serverinfo` and
+     * expect clients to hit the dedicated endpoint. Degrades to an empty list
+     * if the server lacks this too; downstream `ensure()` will surface the
+     * missing-capability error with a useful message.
+     */
+    async fetchCallsFallback(baseUrl, ctx, auth) {
+        try {
+            const env = await this.client().get(baseUrl, '/calls', ctx, buildRequestOptions(auth, { pageSize: 1000 }));
+            return extractDataArray(env) ?? [];
+        }
+        catch (err) {
+            ctx.log.warning('Failed to fetch /calls fallback', {
+                baseUrl,
+                error: err instanceof Error ? err.message : String(err),
+            });
+            return [];
+        }
+    }
+    async fetchCrops(baseUrl, ctx, auth) {
+        try {
+            const env = await this.client().get(baseUrl, '/commoncropnames', ctx, buildRequestOptions(auth, { pageSize: 1000 }));
+            return extractDataArray(env) ?? [];
+        }
+        catch (err) {
+            ctx.log.warning('Failed to fetch /commoncropnames', {
+                baseUrl,
+                error: err instanceof Error ? err.message : String(err),
+            });
+            return [];
+        }
+    }
+    cacheKey(baseUrl) {
+        return `${STATE_KEY_PREFIX}${sanitizeKey(baseUrl)}`;
+    }
+}
+function buildRequestOptions(auth, params) {
+    const options = {};
+    if (auth)
+        options.auth = auth;
+    if (params)
+        options.params = params;
+    return options;
+}
+function indexCalls(calls) {
+    const indexed = {};
+    for (const call of calls) {
+        if (!call?.service)
+            continue;
+        const existing = indexed[call.service];
+        if (!existing) {
+            indexed[call.service] = call;
+            continue;
+        }
+        indexed[call.service] = mergeCallDescriptors(existing, call);
+    }
+    return indexed;
+}
+function mergeCallDescriptors(a, b) {
+    const merged = { service: a.service };
+    const methods = unionArrays(a.methods, b.methods);
+    if (methods)
+        merged.methods = methods;
+    const dataTypes = unionArrays(a.dataTypes, b.dataTypes);
+    if (dataTypes)
+        merged.dataTypes = dataTypes;
+    const versions = unionArrays(a.versions, b.versions);
+    if (versions)
+        merged.versions = versions;
+    return merged;
+}
+function unionArrays(a, b) {
+    if (!a && !b)
+        return;
+    return Array.from(new Set([...(a ?? []), ...(b ?? [])]));
+}
+function normalizeIdentity(info, calls) {
+    const brapiVersion = highestVersion(calls);
+    const identity = {};
+    if (info?.serverName)
+        identity.name = info.serverName;
+    if (info?.serverDescription)
+        identity.description = info.serverDescription;
+    if (info?.organizationName)
+        identity.organizationName = info.organizationName;
+    if (info?.organizationURL)
+        identity.organizationURL = info.organizationURL;
+    if (info?.documentationURL)
+        identity.documentationURL = info.documentationURL;
+    if (info?.contactEmail)
+        identity.contactEmail = info.contactEmail;
+    if (brapiVersion)
+        identity.brapiVersion = brapiVersion;
+    return identity;
+}
+function highestVersion(calls) {
+    let best;
+    for (const call of calls) {
+        for (const version of call.versions ?? []) {
+            if (!best || compareSemver(version, best) > 0)
+                best = version;
+        }
+    }
+    return best;
+}
+/** Loose semver compare — treats missing segments as zero. */
+function compareSemver(a, b) {
+    const parse = (s) => s.split('.').map((p) => Number.parseInt(p, 10) || 0);
+    const pa = parse(a);
+    const pb = parse(b);
+    const len = Math.max(pa.length, pb.length);
+    for (let i = 0; i < len; i++) {
+        const diff = (pa[i] ?? 0) - (pb[i] ?? 0);
+        if (diff !== 0)
+            return diff;
+    }
+    return 0;
+}
+/**
+ * BrAPI envelopes wrap list payloads as either `result: T[]` or
+ * `result: { data: T[] }` depending on the endpoint and server. Handle both.
+ */
+function extractDataArray(envelope) {
+    const result = envelope.result;
+    if (Array.isArray(result))
+        return result;
+    if (result && typeof result === 'object' && 'data' in result && Array.isArray(result.data)) {
+        return result.data;
+    }
+    return;
+}
+function sanitizeKey(value) {
+    return value.replace(/[^a-zA-Z0-9]/g, '-');
+}
+let _registry;
+export function initCapabilityRegistry(serverConfig) {
+    _registry = new CapabilityRegistry(serverConfig);
+}
+export function getCapabilityRegistry() {
+    if (!_registry) {
+        throw new Error('CapabilityRegistry not initialized — call initCapabilityRegistry() in setup()');
+    }
+    return _registry;
+}
+export function resetCapabilityRegistry() {
+    _registry = undefined;
+}
+//# sourceMappingURL=capability-registry.js.map

package/dist/services/capability-registry/capability-registry.js.map

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package/dist/services/capability-registry/index.d.ts

@@ -0,0 +1,9 @@
+/**
+ * @fileoverview Public API barrel for the CapabilityRegistry service.
+ *
+ * @module services/capability-registry
+ */
+export type { CapabilityLookupOptions } from './capability-registry.js';
+export { CapabilityRegistry, getCapabilityRegistry, initCapabilityRegistry, resetCapabilityRegistry, } from './capability-registry.js';
+export type { CallDescriptor, CapabilityProfile, EndpointProbe, ServerIdentity, ServerInfoPayload, } from './types.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/services/capability-registry/index.d.ts.map

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package/dist/services/capability-registry/index.js

@@ -0,0 +1,7 @@
+/**
+ * @fileoverview Public API barrel for the CapabilityRegistry service.
+ *
+ * @module services/capability-registry
+ */
+export { CapabilityRegistry, getCapabilityRegistry, initCapabilityRegistry, resetCapabilityRegistry, } from './capability-registry.js';
+//# sourceMappingURL=index.js.map

package/dist/services/capability-registry/index.js.map

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package/dist/services/capability-registry/types.d.ts

@@ -0,0 +1,67 @@
+/**
+ * @fileoverview Types for the capability profile pulled from a BrAPI server
+ * on connect — what calls it supports, which crops it covers, and any
+ * notable quirks that affect downstream tooling.
+ *
+ * @module services/capability-registry/types
+ */
+/**
+ * One entry in the BrAPI `/calls` response — declares a supported endpoint
+ * with the HTTP methods, data types, and spec versions the server honors.
+ */
+export interface CallDescriptor {
+    dataTypes?: string[];
+    methods?: ('GET' | 'POST' | 'PUT' | 'DELETE' | 'PATCH')[];
+    service: string;
+    versions?: string[];
+}
+/** Raw shape of `GET /serverinfo`. Fields vary wildly across implementations. */
+export interface ServerInfoPayload {
+    calls?: CallDescriptor[];
+    contactEmail?: string;
+    documentationURL?: string;
+    location?: string;
+    organizationName?: string;
+    organizationURL?: string;
+    serverDescription?: string;
+    serverName?: string;
+}
+/**
+ * Normalized server-identity fields extracted from `/serverinfo`. Every field
+ * is optional — BrAPI servers in the wild vary in what they populate.
+ */
+export interface ServerIdentity {
+    /** Highest BrAPI version reported across any call (e.g. "2.1"). */
+    brapiVersion?: string;
+    contactEmail?: string;
+    description?: string;
+    documentationURL?: string;
+    name?: string;
+    organizationName?: string;
+    organizationURL?: string;
+}
+/**
+ * Capability profile for one connected BrAPI server, cached per-connection.
+ * Shape is fully JSON-serializable so it can live in `ctx.state`.
+ */
+export interface CapabilityProfile {
+    baseUrl: string;
+    crops: string[];
+    /** ISO 8601 timestamp of when this profile was fetched. */
+    fetchedAt: string;
+    server: ServerIdentity;
+    /**
+     * Map of canonical service name → descriptor. The service name is the path
+     * segment (e.g. "studies", "search/observations") per BrAPI convention.
+     */
+    supported: Record<string, CallDescriptor>;
+}
+/**
+ * Loose probe of a single endpoint. Most handlers only care whether the
+ * endpoint is supported at all and optionally for a specific HTTP method.
+ */
+export interface EndpointProbe {
+    method?: 'GET' | 'POST' | 'PUT' | 'DELETE' | 'PATCH';
+    service: string;
+}
+//# sourceMappingURL=types.d.ts.map

package/dist/services/capability-registry/types.d.ts.map

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package/dist/services/capability-registry/types.js

@@ -0,0 +1,9 @@
+/**
+ * @fileoverview Types for the capability profile pulled from a BrAPI server
+ * on connect — what calls it supports, which crops it covers, and any
+ * notable quirks that affect downstream tooling.
+ *
+ * @module services/capability-registry/types
+ */
+export {};
+//# sourceMappingURL=types.js.map

package/dist/services/capability-registry/types.js.map

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package/dist/services/dataset-store/dataset-store.d.ts

@@ -0,0 +1,35 @@
+/**
+ * @fileoverview Tenant-scoped dataset lifecycle. Stores metadata and row
+ * payloads in `ctx.state` with TTL from `BRAPI_DATASET_TTL_SECONDS`. Datasets
+ * back the `brapi_manage_dataset` tool (list/summary/load/delete) and act as
+ * the spillover target for `find_*` tools when result sets exceed
+ * `BRAPI_LOAD_LIMIT`. Provenance (source, baseUrl, query) is mandatory on
+ * create — research workflows require reproducibility.
+ *
+ * @module services/dataset-store/dataset-store
+ */
+import type { Context } from '@cyanheads/mcp-ts-core';
+import type { ServerConfig } from '../../config/server-config.js';
+import type { CreateDatasetInput, DatasetListOptions, DatasetListPage, DatasetLoadOptions, DatasetMetadata, DatasetPage } from './types.js';
+export declare class DatasetStore {
+    private readonly serverConfig;
+    constructor(serverConfig: ServerConfig);
+    /**
+     * Persist a new dataset and return its metadata. Rows and metadata are
+     * written under separate keys so `summary` / `list` can avoid paying the
+     * row-payload read cost.
+     */
+    create(ctx: Context, input: CreateDatasetInput): Promise<DatasetMetadata>;
+    /** Return just the metadata for a dataset. Throws `NotFound` when missing. */
+    summary(ctx: Context, datasetId: string): Promise<DatasetMetadata>;
+    /** Return a paginated slice of rows, optionally projected to a subset of columns. */
+    load(ctx: Context, datasetId: string, options?: DatasetLoadOptions): Promise<DatasetPage>;
+    /** Enumerate datasets for this tenant, paginated via opaque cursor. */
+    list(ctx: Context, options?: DatasetListOptions): Promise<DatasetListPage>;
+    /** Delete a dataset's metadata and row payload. Idempotent. */
+    delete(ctx: Context, datasetId: string): Promise<void>;
+}
+export declare function initDatasetStore(serverConfig: ServerConfig): void;
+export declare function getDatasetStore(): DatasetStore;
+export declare function resetDatasetStore(): void;
+//# sourceMappingURL=dataset-store.d.ts.map

package/dist/services/dataset-store/dataset-store.d.ts.map

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package/dist/services/dataset-store/dataset-store.js

@@ -0,0 +1,190 @@
+/**
+ * @fileoverview Tenant-scoped dataset lifecycle. Stores metadata and row
+ * payloads in `ctx.state` with TTL from `BRAPI_DATASET_TTL_SECONDS`. Datasets
+ * back the `brapi_manage_dataset` tool (list/summary/load/delete) and act as
+ * the spillover target for `find_*` tools when result sets exceed
+ * `BRAPI_LOAD_LIMIT`. Provenance (source, baseUrl, query) is mandatory on
+ * create — research workflows require reproducibility.
+ *
+ * @module services/dataset-store/dataset-store
+ */
+import { notFound, validationError } from '@cyanheads/mcp-ts-core/errors';
+const META_PREFIX = 'brapi/ds/meta/';
+const ROWS_PREFIX = 'brapi/ds/rows/';
+const DEFAULT_PAGE_SIZE = 100;
+const MAX_PAGE_SIZE = 1_000;
+export class DatasetStore {
+    serverConfig;
+    constructor(serverConfig) {
+        this.serverConfig = serverConfig;
+    }
+    /**
+     * Persist a new dataset and return its metadata. Rows and metadata are
+     * written under separate keys so `summary` / `list` can avoid paying the
+     * row-payload read cost.
+     */
+    async create(ctx, input) {
+        if (!input.source)
+            throw validationError('Dataset source is required.');
+        if (!input.baseUrl)
+            throw validationError('Dataset baseUrl is required.');
+        const datasetId = crypto.randomUUID();
+        const columns = input.columns?.length ? [...input.columns] : inferColumns(input.rows);
+        const payloadJson = JSON.stringify(input.rows);
+        const sizeBytes = byteLength(payloadJson);
+        const ttl = this.serverConfig.datasetTtlSeconds;
+        const now = new Date();
+        const expiresAt = new Date(now.getTime() + ttl * 1000);
+        const metadata = {
+            datasetId,
+            source: input.source,
+            baseUrl: input.baseUrl,
+            query: input.query,
+            rowCount: input.rows.length,
+            columns,
+            sizeBytes,
+            createdAt: now.toISOString(),
+            expiresAt: expiresAt.toISOString(),
+        };
+        if (input.truncated)
+            metadata.truncated = true;
+        if (typeof input.maxRows === 'number')
+            metadata.maxRows = input.maxRows;
+        await Promise.all([
+            ctx.state.set(metaKey(datasetId), metadata, { ttl }),
+            ctx.state.set(rowsKey(datasetId), input.rows, { ttl }),
+        ]);
+        return metadata;
+    }
+    /** Return just the metadata for a dataset. Throws `NotFound` when missing. */
+    async summary(ctx, datasetId) {
+        const meta = await ctx.state.get(metaKey(datasetId));
+        if (!meta) {
+            throw notFound(`Dataset ${datasetId} not found or expired.`, {
+                datasetId,
+                reason: 'dataset_not_found',
+                ...ctx.recoveryFor('dataset_not_found'),
+            });
+        }
+        return meta;
+    }
+    /** Return a paginated slice of rows, optionally projected to a subset of columns. */
+    async load(ctx, datasetId, options = {}) {
+        const meta = await this.summary(ctx, datasetId);
+        const rows = await ctx.state.get(rowsKey(datasetId));
+        if (!rows) {
+            throw notFound(`Dataset ${datasetId} metadata exists but rows are missing (storage inconsistency or partial expiry).`, {
+                datasetId,
+                reason: 'dataset_rows_missing',
+                ...ctx.recoveryFor('dataset_rows_missing'),
+            });
+        }
+        const pageSize = clampPageSize(options.pageSize);
+        const page = Math.max(1, options.page ?? 1);
+        const totalRows = rows.length;
+        const totalPages = Math.max(1, Math.ceil(totalRows / pageSize));
+        if (page > totalPages && totalRows > 0) {
+            throw validationError(`Dataset ${datasetId} has ${totalPages} page(s) at pageSize=${pageSize}; requested page ${page} is out of range.`, { datasetId, requestedPage: page, totalPages });
+        }
+        const start = (page - 1) * pageSize;
+        const end = start + pageSize;
+        const slice = rows.slice(start, end);
+        if (options.columns?.length) {
+            validateColumns(options.columns, meta.columns);
+        }
+        return {
+            datasetId,
+            rows: options.columns?.length ? projectColumns(slice, options.columns) : slice,
+            page,
+            pageSize,
+            totalRows,
+            totalPages,
+        };
+    }
+    /** Enumerate datasets for this tenant, paginated via opaque cursor. */
+    async list(ctx, options = {}) {
+        const listOpts = {
+            limit: options.limit ?? 50,
+        };
+        if (options.cursor !== undefined)
+            listOpts.cursor = options.cursor;
+        const page = await ctx.state.list(META_PREFIX, listOpts);
+        const datasets = [];
+        for (const item of page.items) {
+            if (isDatasetMetadata(item.value))
+                datasets.push(item.value);
+        }
+        const result = { datasets };
+        if (page.cursor !== undefined)
+            result.cursor = page.cursor;
+        return result;
+    }
+    /** Delete a dataset's metadata and row payload. Idempotent. */
+    async delete(ctx, datasetId) {
+        await ctx.state.deleteMany([metaKey(datasetId), rowsKey(datasetId)]);
+    }
+}
+function metaKey(id) {
+    return `${META_PREFIX}${id}`;
+}
+function rowsKey(id) {
+    return `${ROWS_PREFIX}${id}`;
+}
+function inferColumns(rows) {
+    const seen = new Set();
+    for (const row of rows) {
+        for (const key of Object.keys(row))
+            seen.add(key);
+        if (seen.size > 256)
+            break;
+    }
+    return Array.from(seen);
+}
+function projectColumns(rows, columns) {
+    return rows.map((row) => {
+        const projected = {};
+        for (const col of columns) {
+            if (col in row)
+                projected[col] = row[col];
+        }
+        return projected;
+    });
+}
+function validateColumns(requested, available) {
+    const availableSet = new Set(available);
+    const unknown = requested.filter((c) => !availableSet.has(c));
+    if (unknown.length > 0) {
+        throw validationError(`Unknown column(s): ${unknown.join(', ')}. Available columns: ${available.join(', ')}.`, { unknownColumns: unknown, availableColumns: available });
+    }
+}
+function clampPageSize(value) {
+    if (typeof value !== 'number' || !Number.isFinite(value) || value <= 0) {
+        return DEFAULT_PAGE_SIZE;
+    }
+    return Math.min(Math.floor(value), MAX_PAGE_SIZE);
+}
+function byteLength(value) {
+    if (typeof Buffer !== 'undefined')
+        return Buffer.byteLength(value, 'utf8');
+    return new TextEncoder().encode(value).byteLength;
+}
+function isDatasetMetadata(value) {
+    return (typeof value === 'object' &&
+        value !== null &&
+        'datasetId' in value &&
+        typeof value.datasetId === 'string');
+}
+let _store;
+export function initDatasetStore(serverConfig) {
+    _store = new DatasetStore(serverConfig);
+}
+export function getDatasetStore() {
+    if (!_store) {
+        throw new Error('DatasetStore not initialized — call initDatasetStore() in setup()');
+    }
+    return _store;
+}
+export function resetDatasetStore() {
+    _store = undefined;
+}
+//# sourceMappingURL=dataset-store.js.map

package/dist/services/dataset-store/dataset-store.js.map

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package/dist/services/dataset-store/index.d.ts

@@ -0,0 +1,8 @@
+/**
+ * @fileoverview Public API barrel for the DatasetStore service.
+ *
+ * @module services/dataset-store
+ */
+export { DatasetStore, getDatasetStore, initDatasetStore, resetDatasetStore, } from './dataset-store.js';
+export type { CreateDatasetInput, DatasetListOptions, DatasetListPage, DatasetLoadOptions, DatasetMetadata, DatasetPage, } from './types.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/services/dataset-store/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/services/dataset-store/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EACL,YAAY,EACZ,eAAe,EACf,gBAAgB,EAChB,iBAAiB,GAClB,MAAM,oBAAoB,CAAC;AAC5B,YAAY,EACV,kBAAkB,EAClB,kBAAkB,EAClB,eAAe,EACf,kBAAkB,EAClB,eAAe,EACf,WAAW,GACZ,MAAM,YAAY,CAAC"}

package/dist/services/dataset-store/index.js

@@ -0,0 +1,7 @@
+/**
+ * @fileoverview Public API barrel for the DatasetStore service.
+ *
+ * @module services/dataset-store
+ */
+export { DatasetStore, getDatasetStore, initDatasetStore, resetDatasetStore, } from './dataset-store.js';
+//# sourceMappingURL=index.js.map

package/dist/services/dataset-store/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/services/dataset-store/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EACL,YAAY,EACZ,eAAe,EACf,gBAAgB,EAChB,iBAAiB,GAClB,MAAM,oBAAoB,CAAC"}