@complat/react-spectra-editor 1.0.0-rc2 → 1.0.0-rc20.patch-1

package/dist/helpers/chem_bk.js

@@ -1,787 +0,0 @@
-"use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.convertTopic = exports.Topic2Seed = exports.ToThresEndPts = exports.ToShiftPeaks = exports.ToFrequency = exports.GetCyclicVoltaRatio = exports.GetCyclicVoltaPeakSeparate = exports.GetComparisons = exports.Feature2Peak = exports.Feature2MaxMinPeak = exports.ExtractJcamp = exports.Convert2Thres = exports.Convert2Scan = exports.Convert2Peak = exports.Convert2MaxMinPeak = exports.Convert2DValue = void 0;
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
-var _jcampconverter = _interopRequireDefault(require("jcampconverter"));
-var _reselect = require("reselect");
-var _shift = require("./shift");
-var _cfg = _interopRequireDefault(require("./cfg"));
-var _format = _interopRequireDefault(require("./format"));
-var _list_layout = require("../constants/list_layout");
-var _integration = require("./integration");
-var getTopic = function getTopic(_, props) {
-  return props.topic;
-};
-var getFeature = function getFeature(_, props) {
-  return props.feature;
-};
-var getLayout = function getLayout(state, _) {
-  return state.layout;
-}; // eslint-disable-line
-
-var getShiftOffset = function getShiftOffset(state, _) {
-  // eslint-disable-line
-  var shift = state.shift;
-  var ref = shift.ref,
-    peak = shift.peak;
-  return (0, _shift.FromManualToOffset)(ref, peak);
-};
-var calcXYK = function calcXYK(xs, ys, maxY, offset) {
-  var sp = [];
-  var k = 0;
-  for (var i = 0; i < ys.length; i += 1) {
-    // no-downsample
-    var x = xs[i] - offset;
-    var y = ys[i];
-    var cy = y / maxY;
-    if (cy > 0.0) {
-      k += cy;
-    }
-    sp.push({
-      x: x,
-      y: y,
-      k: k
-    });
-  }
-  return sp;
-};
-var calcXY = function calcXY(xs, ys, maxY, offset) {
-  var sp = [];
-  for (var i = 0; i < ys.length; i += 1) {
-    // no-downsample
-    var x = xs[i] - offset;
-    var y = ys[i];
-    sp.push({
-      x: x,
-      y: y
-    });
-  }
-  return sp;
-};
-var convertTopic = function convertTopic(topic, layout, feature, offset) {
-  var maxY = feature.maxY;
-  var xs = topic.x;
-  var ys = topic.y;
-  var isItgDisable = _cfg.default.btnCmdIntg(layout);
-  if (!isItgDisable) return calcXYK(xs, ys, maxY, offset);
-  return calcXY(xs, ys, maxY, offset);
-};
-exports.convertTopic = convertTopic;
-var Topic2Seed = (0, _reselect.createSelector)(getTopic, getLayout, getFeature, getShiftOffset, convertTopic);
-exports.Topic2Seed = Topic2Seed;
-var getOthers = function getOthers(_, props) {
-  return props.comparisons;
-};
-var calcRescaleXY = function calcRescaleXY(xs, ys, minY, maxY, show) {
-  var sp = [];
-  if (xs.length < 1) return sp;
-  var _ref = [Math.min.apply(Math, (0, _toConsumableArray2.default)(ys)), Math.max.apply(Math, (0, _toConsumableArray2.default)(ys))],
-    lowerY = _ref[0],
-    upperY = _ref[1];
-  var faktor = (maxY - minY) / (upperY - lowerY);
-  for (var i = 0; i < ys.length; i += 2) {
-    // downsample
-    var x = xs[i];
-    var y = (ys[i] - lowerY) * faktor + minY;
-    sp.push({
-      x: x,
-      y: y
-    });
-  }
-  return {
-    data: sp,
-    show: show
-  };
-};
-var convertComparisons = function convertComparisons(layout, comparisons, feature) {
-  var minY = feature.minY,
-    maxY = feature.maxY;
-  if (!comparisons || !(_format.default.isIrLayout(layout) || _format.default.isHplcUvVisLayout(layout) || _format.default.isXRDLayout(layout))) return [];
-  return comparisons.map(function (c) {
-    var spectra = c.spectra,
-      show = c.show;
-    var topic = spectra[0].data[0];
-    var xs = topic.x;
-    var ys = topic.y;
-    return calcRescaleXY(xs, ys, minY, maxY, show);
-  });
-};
-var GetComparisons = (0, _reselect.createSelector)(getLayout, getOthers, getFeature, convertComparisons);
-exports.GetComparisons = GetComparisons;
-var convertFrequency = function convertFrequency(layout, feature) {
-  if (['1H', '13C', '19F', '31P', '15N', '29Si'].indexOf(layout) < 0) return false;
-  var observeFrequency = feature.observeFrequency;
-  var freq = Array.isArray(observeFrequency) ? observeFrequency[0] : observeFrequency;
-  return parseFloat(freq) || false;
-};
-var ToFrequency = (0, _reselect.createSelector)(getLayout, getFeature, convertFrequency);
-exports.ToFrequency = ToFrequency;
-var getThreshold = function getThreshold(state) {
-  return state.threshold ? state.threshold.value * 1.0 : false;
-};
-var Convert2Peak = function Convert2Peak(feature, threshold, offset) {
-  var upThreshold = arguments.length > 3 && arguments[3] !== undefined ? arguments[3] : false;
-  var lowThreshold = arguments.length > 4 && arguments[4] !== undefined ? arguments[4] : false;
-  var peak = [];
-  if (!feature || !feature.data) return peak;
-  var data = feature.data[0];
-  var maxY = feature.maxY,
-    peakUp = feature.peakUp,
-    thresRef = feature.thresRef,
-    minY = feature.minY,
-    upperThres = feature.upperThres,
-    lowerThres = feature.lowerThres;
-  if (upperThres || lowerThres) {
-    var upperThresVal = upThreshold || upperThres;
-    if (!upperThresVal) {
-      upperThresVal = 1.0;
-    }
-    var lowerThresVal = lowThreshold || lowerThres;
-    if (!lowerThresVal) {
-      lowerThresVal = 1.0;
-    }
-    var yUpperThres = parseFloat(upperThresVal) / 100.0 * maxY;
-    var yLowerThres = parseFloat(lowerThresVal) / 100.0 * minY;
-    var corrOffset = offset || 0.0;
-    for (var i = 0; i < data.y.length; i += 1) {
-      var y = data.y[i];
-      var overUpperThres = y >= yUpperThres;
-      var belowThres = y <= yLowerThres;
-      if (overUpperThres || belowThres) {
-        var x = data.x[i] - corrOffset;
-        peak.push({
-          x: x,
-          y: y
-        });
-      }
-    }
-    return peak;
-  } else {
-    var thresVal = threshold || thresRef;
-    var yThres = thresVal * maxY / 100.0;
-    var _corrOffset = offset || 0.0;
-    for (var _i = 0; _i < data.y.length; _i += 1) {
-      var _y = data.y[_i];
-      var overThres = peakUp && Math.abs(_y) >= yThres || !peakUp && Math.abs(_y) <= yThres;
-      if (overThres) {
-        var _x = data.x[_i] - _corrOffset;
-        peak.push({
-          x: _x,
-          y: _y
-        });
-      }
-    }
-    return peak;
-  }
-};
-exports.Convert2Peak = Convert2Peak;
-var Feature2Peak = (0, _reselect.createSelector)(getFeature, getThreshold, getShiftOffset, Convert2Peak);
-exports.Feature2Peak = Feature2Peak;
-var Convert2MaxMinPeak = function Convert2MaxMinPeak(layout, feature, offset) {
-  var peaks = {
-    max: [],
-    min: [],
-    pecker: []
-  };
-  if (!_format.default.isCyclicVoltaLayout(layout) || !feature || !feature.data) return null;
-  var data = feature.data[0];
-  var maxY = feature.maxY,
-    minY = feature.minY,
-    upperThres = feature.upperThres,
-    lowerThres = feature.lowerThres,
-    volammetryData = feature.volammetryData;
-  if (volammetryData && volammetryData.length > 0) {
-    var maxArr = volammetryData.map(function (peakData) {
-      if (peakData.max.x === '') return null;
-      return {
-        x: Number(peakData.max.x),
-        y: Number(peakData.max.y)
-      };
-    });
-    var minArr = volammetryData.map(function (peakData) {
-      if (peakData.min.x === '') return null;
-      return {
-        x: Number(peakData.min.x),
-        y: Number(peakData.min.y)
-      };
-    });
-    var peckerArr = volammetryData.map(function (peakData) {
-      if (peakData.pecker.x === '') return null;
-      return {
-        x: Number(peakData.pecker.x),
-        y: Number(peakData.pecker.y)
-      };
-    });
-    peaks.max = maxArr;
-    peaks.min = minArr;
-    peaks.pecker = peckerArr;
-    return peaks;
-  }
-  var upperThresVal = upperThres;
-  if (!upperThresVal) {
-    upperThresVal = 1.0;
-  }
-  var lowerThresVal = lowerThres;
-  if (!lowerThresVal) {
-    lowerThresVal = 1.0;
-  }
-  var yUpperThres = parseFloat(upperThresVal) / 100.0 * maxY;
-  var yLowerThres = parseFloat(lowerThresVal) / 100.0 * minY;
-  var corrOffset = offset || 0.0;
-  for (var i = 0; i < data.y.length; i += 1) {
-    var y = data.y[i];
-    var overUpperThres = y >= yUpperThres;
-    var belowThres = y <= yLowerThres;
-    var x = data.x[i] - corrOffset;
-    if (overUpperThres) {
-      peaks.max.push({
-        x: x,
-        y: y
-      });
-    } else if (belowThres) {
-      peaks.min.push({
-        x: x,
-        y: y
-      });
-    }
-  }
-  return peaks;
-};
-exports.Convert2MaxMinPeak = Convert2MaxMinPeak;
-var Feature2MaxMinPeak = (0, _reselect.createSelector)(getLayout, getFeature, getShiftOffset, Convert2MaxMinPeak);
-exports.Feature2MaxMinPeak = Feature2MaxMinPeak;
-var convertThresEndPts = function convertThresEndPts(feature, threshold) {
-  var maxY = feature.maxY,
-    maxX = feature.maxX,
-    minX = feature.minX,
-    thresRef = feature.thresRef;
-  var thresVal = threshold || thresRef || 0;
-  if (!thresVal || !feature.data) return [];
-  var yThres = thresVal * maxY / 100.0;
-  var endPts = [{
-    x: minX - 200,
-    y: yThres
-  }, {
-    x: maxX + 200,
-    y: yThres
-  }];
-  return endPts;
-};
-var ToThresEndPts = (0, _reselect.createSelector)(getFeature, getThreshold, convertThresEndPts);
-exports.ToThresEndPts = ToThresEndPts;
-var getShiftPeak = function getShiftPeak(state) {
-  return state.shift.peak;
-};
-var convertSfPeaks = function convertSfPeaks(peak, offset) {
-  if (!peak || !peak.x) return [];
-  return [{
-    x: peak.x - offset,
-    y: peak.y
-  }];
-};
-var ToShiftPeaks = (0, _reselect.createSelector)(getShiftPeak, getShiftOffset, convertSfPeaks);
-
-// - - - - - - - - - - - - - - - - - - - - - -
-// ExtractJcamp
-// - - - - - - - - - - - - - - - - - - - - - -
-exports.ToShiftPeaks = ToShiftPeaks;
-var readLayout = function readLayout(jcamp) {
-  var xType = jcamp.xType,
-    spectra = jcamp.spectra;
-  if (xType && _format.default.isNmrLayout(xType)) return xType;
-  var dataType = spectra[0].dataType;
-  if (dataType) {
-    if (dataType.includes('INFRARED SPECTRUM')) {
-      return _list_layout.LIST_LAYOUT.IR;
-    }
-    if (dataType.includes('RAMAN SPECTRUM')) {
-      return _list_layout.LIST_LAYOUT.RAMAN;
-    }
-    if (dataType.includes('UV/VIS SPECTRUM')) {
-      if (dataType.includes('HPLC')) {
-        return _list_layout.LIST_LAYOUT.HPLC_UVVIS;
-      }
-      return _list_layout.LIST_LAYOUT.UVVIS;
-    }
-    if (dataType.includes('THERMOGRAVIMETRIC ANALYSIS')) {
-      return _list_layout.LIST_LAYOUT.TGA;
-    }
-    if (dataType.includes('X-RAY DIFFRACTION')) {
-      return _list_layout.LIST_LAYOUT.XRD;
-    }
-    if (dataType.includes('MASS SPECTRUM')) {
-      return _list_layout.LIST_LAYOUT.MS;
-    }
-    if (dataType.includes('CYCLIC VOLTAMMETRY')) {
-      return _list_layout.LIST_LAYOUT.CYCLIC_VOLTAMMETRY;
-    }
-    if (dataType.includes('CIRCULAR DICHROISM SPECTROSCOPY')) {
-      return _list_layout.LIST_LAYOUT.CDS;
-    }
-  }
-  return false;
-};
-var extrSpectraShare = function extrSpectraShare(spectra, layout) {
-  return spectra.map(function (s) {
-    return Object.assign({
-      layout: layout
-    }, s);
-  }).filter(function (r) {
-    return r != null;
-  });
-};
-var extrSpectraMs = function extrSpectraMs(jcamp, layout) {
-  var scanCount = jcamp.info.$CSSCANCOUNT || 1;
-  var spc = extrSpectraShare(jcamp.spectra.slice(0, scanCount), layout);
-  return spc || [];
-};
-var extrSpectraNi = function extrSpectraNi(jcamp, layout) {
-  var categorys = jcamp.info.$CSCATEGORY || ['SPECTRUM'];
-  var targetIdx = categorys.indexOf('SPECTRUM');
-  var spectrum = extrSpectraShare(jcamp.spectra, layout)[targetIdx];
-  return [spectrum] || [jcamp.spectra[0]];
-};
-var calcThresRef = function calcThresRef(s, peakUp) {
-  var ys = s && s.data[0].y;
-  if (!ys) return null;
-  var ref = peakUp ? Math.min.apply(Math, (0, _toConsumableArray2.default)(ys.map(function (a) {
-    return Math.abs(a);
-  }))) : Math.max.apply(Math, (0, _toConsumableArray2.default)(ys));
-  return peakUp ? Math.floor(ref * 100 * 100 / s.maxY) / 100 : Math.ceil(ref * 100 * 100 / s.maxY) / 100;
-};
-var calcUpperThres = function calcUpperThres(s) {
-  var ys = s && s.data[0].y;
-  if (!ys) return null;
-  var ref = Math.max.apply(Math, (0, _toConsumableArray2.default)(ys));
-  return Math.floor(ref * 100 * 100 / s.maxY) / 100;
-};
-var calcLowerThres = function calcLowerThres(s) {
-  var ys = s && s.data[0].y;
-  if (!ys) return null;
-  var ref = Math.min.apply(Math, (0, _toConsumableArray2.default)(ys));
-  return Math.ceil(ref * 100 * 100 / s.minY) / 100;
-};
-var extractShift = function extractShift(s, jcamp) {
-  var shift = {
-    selectX: false,
-    solventName: false,
-    solventValue: false
-  };
-  if (!s) return shift;
-  if (s && s.sampleDescription) {
-    var desc = s.sampleDescription;
-    var info = desc.split(/;|=/);
-    return {
-      selectX: parseFloat(info[1]),
-      solventName: info[3],
-      solventValue: parseFloat(info[5])
-    };
-  }
-  return {
-    selectX: parseFloat(jcamp.info.$CSSOLVENTX) || false,
-    solventName: jcamp.info.$CSSOLVENTNAME || false,
-    solventValue: parseFloat(jcamp.info.$CSSOLVENTVALUE) || false
-  };
-};
-var extractVoltammetryData = function extractVoltammetryData(jcamp) {
-  var info = jcamp.info;
-  if (!info.$CSCYCLICVOLTAMMETRYDATA) return null;
-  var regx = /[^0-9.,E,e,-]/g;
-  var rawData = info.$CSCYCLICVOLTAMMETRYDATA.split('\n');
-  var peakStack = rawData.map(function (line) {
-    var splittedLine = line.replace(regx, '').split(',');
-    return {
-      max: {
-        x: splittedLine[0],
-        y: splittedLine[1]
-      },
-      min: {
-        x: splittedLine[2],
-        y: splittedLine[3]
-      },
-      ratio: splittedLine[4],
-      delta: splittedLine[5],
-      pecker: {
-        x: splittedLine[6],
-        y: splittedLine[7]
-      }
-    };
-  });
-  return peakStack;
-};
-var buildPeakFeature = function buildPeakFeature(jcamp, layout, peakUp, s, thresRef) {
-  var upperThres = arguments.length > 5 && arguments[5] !== undefined ? arguments[5] : false;
-  var lowerThres = arguments.length > 6 && arguments[6] !== undefined ? arguments[6] : false;
-  var xType = jcamp.xType,
-    info = jcamp.info;
-  var subTyp = xType ? " - ".concat(xType) : '';
-  return Object.assign({
-    typ: s.dataType + subTyp,
-    peakUp: peakUp,
-    thresRef: thresRef,
-    scanCount: +info.$CSSCANCOUNT,
-    scanAutoTarget: +info.$CSSCANAUTOTARGET,
-    scanEditTarget: +info.$CSSCANEDITTARGET,
-    shift: extractShift(s, jcamp),
-    operation: {
-      layout: layout,
-      nucleus: xType || ''
-    },
-    observeFrequency: info['.OBSERVEFREQUENCY'],
-    solventName: info['.SOLVENTNAME'],
-    upperThres: upperThres,
-    lowerThres: lowerThres,
-    volammetryData: extractVoltammetryData(jcamp)
-  }, s);
-};
-var calcIntgRefArea = function calcIntgRefArea(spectra, stack) {
-  if (stack.length === 0) return 1;
-  var data = spectra[0].data[0];
-  var xs = data.x;
-  var ys = data.y;
-  var maxY = maxArray(ys);
-  var xyk = calcXYK(xs, ys, maxY, 0);
-  var _stack$ = stack[0],
-    xL = _stack$.xL,
-    xU = _stack$.xU,
-    area = _stack$.area;
-  var rawArea = (0, _integration.getArea)(xL, xU, xyk);
-  var raw2realRatio = rawArea / area;
-  return {
-    raw2realRatio: raw2realRatio
-  };
-};
-var maxArray = function maxArray(arr) {
-  var len = arr.length;
-  var max = -Infinity;
-  while (len--) {
-    max = arr[len] > max ? arr[len] : max;
-  }
-  return max;
-};
-var buildIntegFeature = function buildIntegFeature(jcamp, spectra) {
-  var _jcamp$info = jcamp.info,
-    $OBSERVEDINTEGRALS = _jcamp$info.$OBSERVEDINTEGRALS,
-    $OBSERVEDMULTIPLETS = _jcamp$info.$OBSERVEDMULTIPLETS;
-  var regx = /[^0-9.,-]/g;
-  var stack = [];
-  if ($OBSERVEDINTEGRALS) {
-    var its = $OBSERVEDINTEGRALS.split('\n').slice(1);
-    var itStack = its.map(function (t) {
-      var ts = t.replace(regx, '').split(',');
-      return {
-        xL: parseFloat(ts[0]),
-        xU: parseFloat(ts[1]),
-        area: parseFloat(ts[2]),
-        absoluteArea: parseFloat(ts[3])
-      };
-    });
-    stack = [].concat((0, _toConsumableArray2.default)(stack), (0, _toConsumableArray2.default)(itStack));
-  }
-  if ($OBSERVEDMULTIPLETS) {
-    var mps = $OBSERVEDMULTIPLETS.split('\n');
-    var mpStack = mps.map(function (m) {
-      var ms = m.replace(regx, '').split(',');
-      return {
-        xL: parseFloat(ms[1]),
-        xU: parseFloat(ms[2]),
-        area: parseFloat(ms[4])
-      };
-    });
-    stack = [].concat((0, _toConsumableArray2.default)(stack), (0, _toConsumableArray2.default)(mpStack));
-  }
-  var _calcIntgRefArea = calcIntgRefArea(spectra, stack),
-    raw2realRatio = _calcIntgRefArea.raw2realRatio;
-  var mStack = stack.map(function (st) {
-    return Object.assign({}, st, {
-      area: st.area * raw2realRatio
-    });
-  });
-  return {
-    refArea: raw2realRatio,
-    refFactor: 1,
-    shift: 0,
-    stack: mStack,
-    originStack: stack
-  };
-};
-
-/*
-const range = (head, tail, length) => {
-  const actTail = tail || length - 1;
-  return (
-    Array(actTail - head + 1).fill().map((_, idx) => head + idx)
-  );
-};
-*/
-
-var buildSimFeature = function buildSimFeature(jcamp) {
-  var $CSSIMULATIONPEAKS = jcamp.info.$CSSIMULATIONPEAKS;
-  var nmrSimPeaks = $CSSIMULATIONPEAKS ? $CSSIMULATIONPEAKS.split('\n') : [];
-  nmrSimPeaks = nmrSimPeaks.map(function (x) {
-    return parseFloat(x).toFixed(2);
-  });
-  return {
-    nmrSimPeaks: nmrSimPeaks
-  };
-};
-var buildMpyFeature = function buildMpyFeature(jcamp) {
-  var _jcamp$info2 = jcamp.info,
-    $OBSERVEDMULTIPLETS = _jcamp$info2.$OBSERVEDMULTIPLETS,
-    $OBSERVEDMULTIPLETSPEAKS = _jcamp$info2.$OBSERVEDMULTIPLETSPEAKS;
-  var regx = /[^A-Za-z0-9.,-]/g;
-  var regxNum = /[^0-9.]/g;
-  var stack = [];
-  if (!$OBSERVEDMULTIPLETSPEAKS) return {
-    stack: []
-  };
-  var allPeaks = $OBSERVEDMULTIPLETSPEAKS.split('\n').map(function (p) {
-    return p.replace(regx, '').split(',');
-  });
-  if ($OBSERVEDMULTIPLETS) {
-    var mp = $OBSERVEDMULTIPLETS.split('\n');
-    var mpStack = mp.map(function (m) {
-      var ms = m.replace(regx, '').split(',');
-      var idx = ms[0];
-      var ys = [];
-      var peaks = allPeaks.map(function (p) {
-        if (p[0] === idx) {
-          ys = [].concat((0, _toConsumableArray2.default)(ys), [parseFloat(p[2])]);
-          return {
-            x: parseFloat(p[1]),
-            y: parseFloat(p[2])
-          };
-        }
-        return null;
-      }).filter(function (r) {
-        return r != null;
-      });
-      var js = m.split(',');
-      js = js[js.length - 1].split(' ').map(function (j) {
-        return parseFloat(j.replace(regxNum, ''));
-      }).filter(Boolean);
-      return {
-        js: js,
-        mpyType: ms[6],
-        xExtent: {
-          xL: parseFloat(ms[1]),
-          xU: parseFloat(ms[2])
-        },
-        yExtent: {
-          yL: Math.min.apply(Math, (0, _toConsumableArray2.default)(ys)),
-          yU: Math.max.apply(Math, (0, _toConsumableArray2.default)(ys))
-        },
-        peaks: peaks
-      };
-    });
-    stack = [].concat((0, _toConsumableArray2.default)(stack), (0, _toConsumableArray2.default)(mpStack));
-  }
-  return {
-    stack: stack,
-    shift: 0,
-    smExtext: false
-  };
-};
-var isPeakTable = function isPeakTable(s) {
-  return s.dataType && (s.dataType.includes('PEAKTABLE') || s.dataType.includes('PEAK ASSIGNMENTS'));
-};
-var extrFeaturesNi = function extrFeaturesNi(jcamp, layout, peakUp, spectra) {
-  var nfs = {};
-  var category = jcamp.info.$CSCATEGORY;
-  if (category) {
-    var idxEditPeak = category.indexOf('EDIT_PEAK');
-    if (idxEditPeak >= 0) {
-      var sEP = jcamp.spectra[idxEditPeak];
-      var thresRef = calcThresRef(sEP, peakUp);
-      nfs.editPeak = buildPeakFeature(jcamp, layout, peakUp, sEP, thresRef);
-    }
-    var idxAutoPeak = category.indexOf('AUTO_PEAK');
-    if (idxAutoPeak >= 0) {
-      var sAP = jcamp.spectra[idxAutoPeak];
-      var _thresRef = calcThresRef(sAP, peakUp);
-      nfs.autoPeak = buildPeakFeature(jcamp, layout, peakUp, sAP, _thresRef);
-    }
-    nfs.integration = buildIntegFeature(jcamp, spectra);
-    nfs.multiplicity = buildMpyFeature(jcamp);
-    nfs.simulation = buildSimFeature(jcamp);
-    return nfs;
-  }
-  // workaround for legacy design
-  var features = jcamp.spectra.map(function (s) {
-    var thresRef = calcThresRef(s, peakUp);
-    return isPeakTable(s) ? buildPeakFeature(jcamp, layout, peakUp, s, thresRef) : null;
-  }).filter(function (r) {
-    return r != null;
-  });
-  var integration = buildIntegFeature(jcamp, spectra);
-  var multiplicity = buildMpyFeature(jcamp);
-  var simulation = buildSimFeature(jcamp);
-  return {
-    editPeak: features[0],
-    autoPeak: features[1],
-    integration: integration,
-    multiplicity: multiplicity,
-    simulation: simulation
-  };
-};
-var extrFeaturesXrd = function extrFeaturesXrd(jcamp, layout, peakUp) {
-  var base = jcamp.spectra[0];
-  var features = jcamp.spectra.map(function (s) {
-    var upperThres = _format.default.isXRDLayout(layout) ? 100 : calcUpperThres(s);
-    var lowerThres = _format.default.isXRDLayout(layout) ? 100 : calcLowerThres(s);
-    var cpo = buildPeakFeature(jcamp, layout, peakUp, s, 100, upperThres, lowerThres);
-    var bnd = getBoundary(s);
-    return Object.assign({}, base, cpo, bnd);
-  }).filter(function (r) {
-    return r != null;
-  });
-  var category = jcamp.info.$CSCATEGORY;
-  if (category) {
-    var idxEditPeak = category.indexOf('EDIT_PEAK');
-    if (idxEditPeak >= 0) {
-      var sEP = jcamp.spectra[idxEditPeak];
-      var thresRef = calcThresRef(sEP, peakUp);
-      features.editPeak = buildPeakFeature(jcamp, layout, peakUp, sEP, thresRef);
-    }
-    var idxAutoPeak = category.indexOf('AUTO_PEAK');
-    if (idxAutoPeak >= 0) {
-      var sAP = jcamp.spectra[idxAutoPeak];
-      var _thresRef2 = calcThresRef(sAP, peakUp);
-      features.autoPeak = buildPeakFeature(jcamp, layout, peakUp, sAP, _thresRef2);
-    }
-  }
-  return features;
-};
-var extrFeaturesCylicVolta = function extrFeaturesCylicVolta(jcamp, layout, peakUp) {
-  var base = jcamp.spectra[0];
-  var features = jcamp.spectra.map(function (s) {
-    var upperThres = _format.default.isXRDLayout(layout) ? 100 : calcUpperThres(s);
-    var lowerThres = _format.default.isXRDLayout(layout) ? 100 : calcLowerThres(s);
-    var cpo = buildPeakFeature(jcamp, layout, peakUp, s, 100, upperThres, lowerThres);
-    var bnd = getBoundary(s);
-    return Object.assign({}, base, cpo, bnd);
-  }).filter(function (r) {
-    return r != null;
-  });
-  return features;
-};
-var getBoundary = function getBoundary(s) {
-  var _s$data$ = s.data[0],
-    x = _s$data$.x,
-    y = _s$data$.y;
-  var maxX = Math.max.apply(Math, (0, _toConsumableArray2.default)(x));
-  var minX = Math.min.apply(Math, (0, _toConsumableArray2.default)(x));
-  var maxY = Math.max.apply(Math, (0, _toConsumableArray2.default)(y));
-  var minY = Math.min.apply(Math, (0, _toConsumableArray2.default)(y));
-  return {
-    maxX: maxX,
-    minX: minX,
-    maxY: maxY,
-    minY: minY
-  };
-};
-var extrFeaturesMs = function extrFeaturesMs(jcamp, layout, peakUp) {
-  // const nfs = {};
-  // const category = jcamp.info.$CSCATEGORY;
-  // const scanCount = parseInt(jcamp.info.$CSSCANCOUNT, 10) - 1;
-  // if (category) {
-  //   const idxEditPeak = category.indexOf('EDIT_PEAK');
-  //   if (idxEditPeak >= 0) {
-  //     const sEP = jcamp.spectra[idxEditPeak + scanCount];
-  //     const thresRef = calcThresRef(sEP, peakUp);
-  //     nfs.editPeak = buildPeakFeature(jcamp, layout, peakUp, sEP, thresRef);
-  //   }
-  //   const idxAutoPeak = category.indexOf('AUTO_PEAK');
-  //   if (idxAutoPeak >= 0) {
-  //     const sAP = jcamp.spectra[idxAutoPeak + scanCount];
-  //     const thresRef = calcThresRef(sAP, peakUp);
-  //     nfs.autoPeak = buildPeakFeature(jcamp, layout, peakUp, sAP, thresRef);
-  //   }
-  //   return nfs;
-  // }
-  // // workaround for legacy design
-  var thresRef = jcamp.info && jcamp.info.$CSTHRESHOLD * 100 || 5;
-  var base = jcamp.spectra[0];
-  var features = jcamp.spectra.map(function (s) {
-    var cpo = buildPeakFeature(jcamp, layout, peakUp, s, +thresRef.toFixed(4));
-    var bnd = getBoundary(s);
-    return Object.assign({}, base, cpo, bnd);
-  }).filter(function (r) {
-    return r != null;
-  });
-  return features;
-};
-var ExtractJcamp = function ExtractJcamp(source) {
-  var jcamp = _jcampconverter.default.convert(source, {
-    xy: true,
-    keepRecordsRegExp: /(\$CSTHRESHOLD|\$CSSCANAUTOTARGET|\$CSSCANEDITTARGET|\$CSSCANCOUNT|\$CSSOLVENTNAME|\$CSSOLVENTVALUE|\$CSSOLVENTX|\$CSCATEGORY|\$CSITAREA|\$CSITFACTOR|\$OBSERVEDINTEGRALS|\$OBSERVEDMULTIPLETS|\$OBSERVEDMULTIPLETSPEAKS|\.SOLVENTNAME|\.OBSERVEFREQUENCY|\$CSSIMULATIONPEAKS|\$CSUPPERTHRESHOLD|\$CSLOWERTHRESHOLD|\$CSCYCLICVOLTAMMETRYDATA)/ // eslint-disable-line
-  });
-
-  var layout = readLayout(jcamp);
-  var peakUp = !_format.default.isIrLayout(layout);
-  var spectra = _format.default.isMsLayout(layout) ? extrSpectraMs(jcamp, layout) : extrSpectraNi(jcamp, layout);
-  var features = {};
-  if (_format.default.isMsLayout(layout)) {
-    features = extrFeaturesMs(jcamp, layout, peakUp);
-  } else if (_format.default.isXRDLayout(layout) || _format.default.isCDSLayout(layout)) {
-    features = extrFeaturesXrd(jcamp, layout, peakUp);
-  } else if (_format.default.isCyclicVoltaLayout(layout)) {
-    features = extrFeaturesCylicVolta(jcamp, layout, peakUp);
-  } else {
-    features = extrFeaturesNi(jcamp, layout, peakUp, spectra);
-  }
-  // const features = Format.isMsLayout(layout)
-  //   ? extrFeaturesMs(jcamp, layout, peakUp)
-  //   : ((Format.isXRDLayout(layout) || Format.isCyclicVoltaLayout(layout))
-  //     ? extrFeaturesXrd(jcamp, layout, peakUp) : extrFeaturesNi(jcamp, layout, peakUp, spectra));
-
-  return {
-    spectra: spectra,
-    features: features,
-    layout: layout
-  };
-};
-exports.ExtractJcamp = ExtractJcamp;
-var Convert2Scan = function Convert2Scan(feature, scanSt) {
-  var scanAutoTarget = feature.scanAutoTarget,
-    scanEditTarget = feature.scanEditTarget;
-  var target = scanSt.target,
-    isAuto = scanSt.isAuto;
-  var hasEdit = !!scanEditTarget;
-  var defaultIdx = isAuto || !hasEdit ? scanAutoTarget : scanEditTarget;
-  return target || defaultIdx;
-};
-exports.Convert2Scan = Convert2Scan;
-var Convert2Thres = function Convert2Thres(feature, thresSt) {
-  var value = thresSt.value || feature.thresRef;
-  return value;
-};
-exports.Convert2Thres = Convert2Thres;
-var Convert2DValue = function Convert2DValue(doubleTheta) {
-  var lambda = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : 0.15406;
-  var isRadian = arguments.length > 2 && arguments[2] !== undefined ? arguments[2] : true;
-  var theta = doubleTheta / 2;
-  if (isRadian) {
-    theta = theta / 180 * Math.PI;
-  }
-  var sinTheta = Math.sin(theta);
-  var dValue = lambda / (2 * sinTheta);
-  return dValue;
-};
-exports.Convert2DValue = Convert2DValue;
-var GetCyclicVoltaRatio = function GetCyclicVoltaRatio(y_max_peak, y_min_peak, y_pecker) {
-  var firstExpr = Math.abs(y_min_peak) / Math.abs(y_max_peak);
-  var secondExpr = 0.485 * Math.abs(y_pecker) / Math.abs(y_max_peak);
-  var ratio = firstExpr + secondExpr + 0.086;
-  return ratio;
-};
-exports.GetCyclicVoltaRatio = GetCyclicVoltaRatio;
-var GetCyclicVoltaPeakSeparate = function GetCyclicVoltaPeakSeparate(x_max_peak, x_min_peak) {
-  var delta = Math.abs(x_max_peak - x_min_peak);
-  return delta;
-};
-exports.GetCyclicVoltaPeakSeparate = GetCyclicVoltaPeakSeparate;