@cleocode/core 2026.4.13 → 2026.4.15

package/dist/system/archive-stats.js

@@ -1,64 +0,0 @@
-/**
- * Archive statistics core module.
- * @task T4783
- */
-import { getAccessor } from '../store/data-accessor.js';
-/** Get archive statistics. */
-export async function getArchiveStats(opts, accessor) {
-    const periodDays = opts.period ?? 30;
-    const cutoff = new Date(Date.now() - periodDays * 86400000).toISOString();
-    const acc = accessor ?? (await getAccessor(opts.cwd));
-    const archive = await acc.loadArchive();
-    if (!archive?.archivedTasks) {
-        return {
-            totalArchived: 0,
-            byReason: {},
-            averageCycleTimeDays: null,
-            archiveRate: { periodDays, archivedInPeriod: 0 },
-            lastArchived: null,
-        };
-    }
-    // ArchivedTask extends Task with _archive metadata; safe narrowing from Task[]
-    const archived = archive.archivedTasks;
-    // By reason
-    const byReason = {};
-    for (const t of archived) {
-        const reason = t._archive?.archiveReason || 'unknown';
-        byReason[reason] = (byReason[reason] ?? 0) + 1;
-    }
-    // Average cycle time
-    let totalCycleDays = 0;
-    let samples = 0;
-    for (const t of archived) {
-        if (t.createdAt && t.completedAt) {
-            const created = new Date(t.createdAt).getTime();
-            const completed = new Date(t.completedAt).getTime();
-            if (completed > created) {
-                totalCycleDays += (completed - created) / 86400000;
-                samples++;
-            }
-        }
-    }
-    const averageCycleTimeDays = samples > 0 ? Math.round((totalCycleDays / samples) * 100) / 100 : null;
-    // Archive rate
-    const archivedInPeriod = archived.filter((t) => {
-        const archivedAt = t._archive?.archivedAt;
-        return archivedAt && archivedAt >= cutoff;
-    }).length;
-    // Find the most recent archived-at timestamp
-    let lastArchived = null;
-    for (const t of archived) {
-        const at = t._archive?.archivedAt;
-        if (at && (!lastArchived || at > lastArchived)) {
-            lastArchived = at;
-        }
-    }
-    return {
-        totalArchived: archived.length,
-        byReason,
-        averageCycleTimeDays,
-        archiveRate: { periodDays, archivedInPeriod },
-        lastArchived,
-    };
-}
-//# sourceMappingURL=archive-stats.js.map

package/dist/system/archive-stats.js.map

@@ -1 +0,0 @@
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package/dist/system/audit.js

@@ -1,145 +0,0 @@
-/**
- * Data integrity audit core module.
- * @task T4783
- */
-import { existsSync, readFileSync } from 'node:fs';
-import { join } from 'node:path';
-import { getAccessor } from '../store/data-accessor.js';
-/** Audit data integrity. */
-export async function auditData(projectRoot, opts) {
-    const cleoDir = join(projectRoot, '.cleo');
-    const scope = opts?.scope ?? 'all';
-    const issues = [];
-    if (scope === 'all' || scope === 'tasks') {
-        const tasksDbPath = join(cleoDir, 'tasks.db');
-        if (existsSync(tasksDbPath)) {
-            try {
-                const accessor = await getAccessor(projectRoot);
-                const queryResult = await accessor.queryTasks({});
-                const tasks = queryResult.tasks ?? [];
-                const idSet = new Set();
-                for (const t of tasks) {
-                    if (idSet.has(t.id)) {
-                        issues.push({
-                            severity: 'error',
-                            category: 'tasks',
-                            message: `Duplicate task ID: ${t.id}`,
-                        });
-                    }
-                    idSet.add(t.id);
-                }
-                for (const t of tasks) {
-                    if (t.parentId && !idSet.has(t.parentId)) {
-                        issues.push({
-                            severity: 'warning',
-                            category: 'tasks',
-                            message: `Task ${t.id} references non-existent parent: ${t.parentId}`,
-                        });
-                    }
-                }
-                for (const t of tasks) {
-                    if (!t.title)
-                        issues.push({
-                            severity: 'error',
-                            category: 'tasks',
-                            message: `Task ${t.id} missing title`,
-                        });
-                    if (!t.status)
-                        issues.push({
-                            severity: 'error',
-                            category: 'tasks',
-                            message: `Task ${t.id} missing status`,
-                        });
-                }
-                for (const t of tasks) {
-                    if (t.depends) {
-                        for (const dep of t.depends) {
-                            if (!idSet.has(dep)) {
-                                issues.push({
-                                    severity: 'warning',
-                                    category: 'tasks',
-                                    message: `Task ${t.id} depends on non-existent: ${dep}`,
-                                });
-                            }
-                        }
-                    }
-                }
-            }
-            catch (err) {
-                issues.push({
-                    severity: 'error',
-                    category: 'tasks',
-                    message: `Failed to read tasks.db: ${err}`,
-                });
-            }
-        }
-    }
-    if (scope === 'all' || scope === 'sessions') {
-        const sessPath = join(cleoDir, 'sessions.json');
-        if (existsSync(sessPath)) {
-            try {
-                const data = JSON.parse(readFileSync(sessPath, 'utf-8'));
-                const sessions = data.sessions ?? [];
-                const sessionIds = new Set();
-                for (const s of sessions) {
-                    if (sessionIds.has(s.id)) {
-                        issues.push({
-                            severity: 'error',
-                            category: 'sessions',
-                            message: `Duplicate session ID: ${s.id}`,
-                        });
-                    }
-                    sessionIds.add(s.id);
-                }
-                for (const s of sessions) {
-                    if (!s.scope?.rootTaskId) {
-                        issues.push({
-                            severity: 'warning',
-                            category: 'sessions',
-                            message: `Session ${s.id} missing scope rootTaskId`,
-                        });
-                    }
-                }
-            }
-            catch (err) {
-                issues.push({
-                    severity: 'error',
-                    category: 'sessions',
-                    message: `Failed to parse sessions.json: ${err}`,
-                });
-            }
-        }
-    }
-    if (scope === 'all') {
-        const seqPath = join(cleoDir, '.sequence.json');
-        if (existsSync(seqPath)) {
-            try {
-                const seq = JSON.parse(readFileSync(seqPath, 'utf-8'));
-                if (typeof seq.counter !== 'number') {
-                    issues.push({
-                        severity: 'error',
-                        category: 'sequence',
-                        message: 'Sequence counter is not a number',
-                    });
-                }
-            }
-            catch {
-                issues.push({
-                    severity: 'error',
-                    category: 'sequence',
-                    message: 'Failed to parse .sequence.json',
-                });
-            }
-        }
-    }
-    return {
-        scope,
-        issues,
-        summary: {
-            errors: issues.filter((i) => i.severity === 'error').length,
-            warnings: issues.filter((i) => i.severity === 'warning').length,
-            fixed: 0,
-        },
-    };
-}
-//# sourceMappingURL=audit.js.map

package/dist/system/audit.js.map

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package/dist/system/backup.js

@@ -1,280 +0,0 @@
-/**
- * Backup and restore core module.
- *
- * Produces full-`.cleo/` snapshots containing tasks.db, brain.db, config.json
- * and project-info.json using the safest available method for each file type:
- *
- *   - SQLite databases: `VACUUM INTO` via the live native handle (see
- *     {@link ../store/sqlite-backup.ts}). This is the ONLY safe way to
- *     snapshot a WAL-mode SQLite database while it is open — raw filesystem
- *     copies can capture torn writes or stale WAL frames.
- *
- *   - JSON files: atomic tmp-then-rename via {@link atomicWrite} so a partial
- *     write can never corrupt the backup target.
- *
- * Snapshots are recorded under `.cleo/backups/{type}/` with a JSON sidecar
- * (`{backupId}.meta.json`) enumerating which files were captured and how.
- * Restores read the same sidecars and materialize each file back into the
- * live `.cleo/` directory.
- *
- * This is the backing store for the `cleo backup` and `cleo restore backup`
- * CLI verbs (see packages/cleo/src/cli/commands/backup.ts and restore.ts).
- *
- * @task T4783
- * @task T5158 — extended to use VACUUM INTO for .db files and atomicWrite for JSON
- */
-import { copyFileSync, existsSync, mkdirSync, readdirSync, readFileSync, renameSync, unlinkSync, writeFileSync, } from 'node:fs';
-import { dirname, join } from 'node:path';
-import { ExitCode } from '@cleocode/contracts';
-import { CleoError } from '../errors.js';
-import { getBrainNativeDb } from '../store/brain-sqlite.js';
-import { getNativeDb } from '../store/sqlite.js';
-/** Safe wrapper around VACUUM INTO: flushes WAL then clones the DB. */
-function safeSqliteSnapshot(db, destPath) {
-    if (!db)
-        return false;
-    db.exec('PRAGMA wal_checkpoint(TRUNCATE)');
-    const safeDest = destPath.replace(/'/g, "''");
-    db.exec(`VACUUM INTO '${safeDest}'`);
-    return true;
-}
-/**
- * Synchronous atomic write: writes to a sibling `.tmp` file and renames on
- * success. Mirrors the behavior of `write-file-atomic` but in a sync flavor
- * suitable for `createBackup()` which has a sync contract throughout its
- * call chain.
- *
- * On rename failure the tmp file is best-effort cleaned up. Throws on the
- * originating error so callers can decide how to handle the backup partial.
- */
-function atomicWriteSync(destPath, data) {
-    mkdirSync(dirname(destPath), { recursive: true });
-    const tmp = `${destPath}.${process.pid}.${Date.now()}.tmp`;
-    try {
-        writeFileSync(tmp, data);
-        renameSync(tmp, destPath);
-    }
-    catch (err) {
-        try {
-            unlinkSync(tmp);
-        }
-        catch {
-            /* ignore cleanup failure */
-        }
-        throw err;
-    }
-}
-/**
- * Create a backup of the canonical CLEO data files.
- *
- * Produces safe copies via VACUUM INTO (for SQLite) and atomicWrite
- * (for JSON) into `.cleo/backups/{type}/`. Writes a `{backupId}.meta.json`
- * sidecar describing the snapshot.
- *
- * Opens both `tasks.db` and `brain.db` through their canonical drizzle
- * accessors before snapshotting so that the native DB handles are live
- * when `safeSqliteSnapshot` asks for them. This makes the function
- * self-contained — callers do not need to pre-open the DBs.
- *
- * Async because opening the database engines requires async migration
- * reconciliation (ADR-012). The CLI dispatch layer awaits this result.
- */
-export async function createBackup(projectRoot, opts) {
-    const cleoDir = join(projectRoot, '.cleo');
-    const btype = opts?.type || 'snapshot';
-    const timestamp = new Date().toISOString();
-    const backupId = `${btype}-${timestamp.replace(/[:.]/g, '-')}`;
-    const backupDir = join(cleoDir, 'backups', btype);
-    if (!existsSync(backupDir)) {
-        mkdirSync(backupDir, { recursive: true });
-    }
-    // Ensure both SQLite engines are initialized so getNativeDb/
-    // getBrainNativeDb return live handles when we call them below. Both
-    // opens are best-effort — if one fails we still snapshot whatever we
-    // can reach (plus the JSON files). Dynamic imports avoid pulling
-    // drizzle into test suites that mock the store layer.
-    try {
-        const { getDb } = await import('../store/sqlite.js');
-        await getDb(projectRoot);
-    }
-    catch {
-        // tasks.db open failed — will be skipped by the sqlite target below
-    }
-    try {
-        const { getBrainDb } = await import('../store/brain-sqlite.js');
-        await getBrainDb(projectRoot);
-    }
-    catch {
-        // brain.db open failed — will be skipped by the sqlite target below
-    }
-    /**
-     * Per-file backup strategy. SQLite files go through `safeSqliteSnapshot`
-     * (VACUUM INTO), JSON files through `atomicWrite`. Anything not in this
-     * table is skipped.
-     */
-    const sqliteTargets = [
-        { file: 'tasks.db', getDb: getNativeDb },
-        { file: 'brain.db', getDb: getBrainNativeDb },
-    ];
-    const jsonTargets = ['config.json', 'project-info.json'];
-    const backedUp = [];
-    // SQLite via VACUUM INTO.
-    for (const target of sqliteTargets) {
-        const src = join(cleoDir, target.file);
-        if (!existsSync(src))
-            continue;
-        const dest = join(backupDir, `${target.file}.${backupId}`);
-        try {
-            const ok = safeSqliteSnapshot(target.getDb(), dest);
-            if (ok) {
-                backedUp.push(target.file);
-            }
-        }
-        catch {
-            // skip files that fail to snapshot — backup remains partial but usable
-        }
-    }
-    // JSON via atomic write.
-    for (const file of jsonTargets) {
-        const src = join(cleoDir, file);
-        if (!existsSync(src))
-            continue;
-        const dest = join(backupDir, `${file}.${backupId}`);
-        try {
-            const content = readFileSync(src);
-            atomicWriteSync(dest, content);
-            backedUp.push(file);
-        }
-        catch {
-            // skip files that fail to copy
-        }
-    }
-    // Write metadata sidecar.
-    const metaPath = join(backupDir, `${backupId}.meta.json`);
-    try {
-        atomicWriteSync(metaPath, JSON.stringify({
-            backupId,
-            type: btype,
-            timestamp,
-            note: opts?.note,
-            files: backedUp,
-        }, null, 2));
-    }
-    catch {
-        // non-fatal
-    }
-    return { backupId, path: backupDir, timestamp, type: btype, files: backedUp };
-}
-/**
- * List all available system backups (snapshot, safety, migration types).
- * Reads `.meta.json` sidecar files written by createBackup.
- * This is a pure read operation — it does not modify any files.
- * @task T4783
- */
-export function listSystemBackups(projectRoot) {
-    const cleoDir = join(projectRoot, '.cleo');
-    const backupTypes = ['snapshot', 'safety', 'migration'];
-    const entries = [];
-    for (const btype of backupTypes) {
-        const backupDir = join(cleoDir, 'backups', btype);
-        if (!existsSync(backupDir))
-            continue;
-        try {
-            const files = readdirSync(backupDir).filter((f) => f.endsWith('.meta.json'));
-            for (const metaFile of files) {
-                try {
-                    const raw = readFileSync(join(backupDir, metaFile), 'utf-8');
-                    const meta = JSON.parse(raw);
-                    if (meta.backupId && meta.timestamp) {
-                        entries.push({
-                            backupId: meta.backupId,
-                            type: meta.type ?? btype,
-                            timestamp: meta.timestamp,
-                            note: meta.note,
-                            files: meta.files ?? [],
-                        });
-                    }
-                }
-                catch {
-                    // skip malformed meta files
-                }
-            }
-        }
-        catch {
-            // skip unreadable backup directories
-        }
-    }
-    // Sort newest first
-    return entries.sort((a, b) => b.timestamp.localeCompare(a.timestamp));
-}
-/**
- * Restore a backup into the live `.cleo/` directory.
- *
- * This operation overwrites the in-place copies of the files recorded in
- * the backup's sidecar. SQLite files are restored via a plain `copyFileSync`
- * because restore runs BEFORE the next CLEO process opens the database — no
- * WAL is active at that point — so a filesystem copy is safe. Callers must
- * ensure no CLEO process is concurrently writing to the target database.
- *
- * JSON files are restored via `atomicWrite` (tmp-then-rename) so a crash
- * mid-restore cannot produce a truncated config.
- */
-export function restoreBackup(projectRoot, params) {
-    if (!params.backupId) {
-        throw new CleoError(ExitCode.INVALID_INPUT, 'backupId is required');
-    }
-    const cleoDir = join(projectRoot, '.cleo');
-    const backupTypes = ['snapshot', 'safety', 'migration'];
-    let metaPath = null;
-    let backupDir = null;
-    for (const btype of backupTypes) {
-        const candidateMeta = join(cleoDir, 'backups', btype, `${params.backupId}.meta.json`);
-        if (existsSync(candidateMeta)) {
-            metaPath = candidateMeta;
-            backupDir = join(cleoDir, 'backups', btype);
-            break;
-        }
-    }
-    if (!metaPath || !backupDir) {
-        throw new CleoError(ExitCode.NOT_FOUND, `Backup not found: ${params.backupId}`);
-    }
-    let meta;
-    try {
-        meta = JSON.parse(readFileSync(metaPath, 'utf-8'));
-    }
-    catch {
-        throw new CleoError(ExitCode.FILE_ERROR, 'Failed to read backup metadata');
-    }
-    const restored = [];
-    for (const file of meta.files ?? []) {
-        const backupFile = join(backupDir, `${file}.${params.backupId}`);
-        if (!existsSync(backupFile))
-            continue;
-        const destPath = join(cleoDir, file);
-        try {
-            if (file.endsWith('.db')) {
-                // Atomic filesystem copy — target DB must not be in use (caller's
-                // responsibility). Raw copy is safe here because no VACUUM INTO is
-                // applicable (we are writing to the final location, not into a
-                // snapshot).
-                copyFileSync(backupFile, destPath);
-            }
-            else {
-                // JSON via atomic tmp-then-rename.
-                const content = readFileSync(backupFile);
-                atomicWriteSync(destPath, content);
-            }
-            restored.push(file);
-        }
-        catch {
-            // skip files that fail to restore
-        }
-    }
-    return {
-        restored: restored.length > 0,
-        backupId: params.backupId,
-        timestamp: meta.timestamp ?? new Date().toISOString(),
-        filesRestored: restored,
-    };
-}
-//# sourceMappingURL=backup.js.map

package/dist/system/backup.js.map

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package/dist/system/cleanup.js

@@ -1,134 +0,0 @@
-/**
- * System cleanup core module.
- * @task T4783
- */
-import { existsSync, readdirSync, readFileSync, unlinkSync, writeFileSync } from 'node:fs';
-import { join } from 'node:path';
-import { ExitCode } from '@cleocode/contracts';
-import { pruneAuditLog } from '../audit-prune.js';
-import { loadConfig } from '../config.js';
-import { CleoError } from '../errors.js';
-/** Cleanup stale data (sessions, backups, logs). */
-export async function cleanupSystem(projectRoot, params) {
-    if (!params.target) {
-        throw new CleoError(ExitCode.INVALID_INPUT, 'target is required (sessions|backups|logs|archive)');
-    }
-    const cleoDir = join(projectRoot, '.cleo');
-    const dryRun = params.dryRun ?? false;
-    const items = [];
-    let prunedRows;
-    let archivedRows;
-    let archivePath;
-    switch (params.target) {
-        case 'sessions': {
-            const sessPath = join(cleoDir, 'sessions.json');
-            if (existsSync(sessPath)) {
-                try {
-                    const data = JSON.parse(readFileSync(sessPath, 'utf-8'));
-                    const sessions = data.sessions ?? [];
-                    const stale = sessions.filter((s) => {
-                        if (s.status !== 'active')
-                            return false;
-                        if (params.olderThan && s.lastActivity) {
-                            return s.lastActivity < params.olderThan;
-                        }
-                        const cutoff = new Date(Date.now() - 86400000).toISOString();
-                        return s.lastActivity && s.lastActivity < cutoff;
-                    });
-                    for (const s of stale) {
-                        items.push(s.id);
-                    }
-                    if (!dryRun && stale.length > 0) {
-                        const staleIds = new Set(stale.map((s) => s.id));
-                        data.sessions = sessions.filter((s) => !staleIds.has(s.id));
-                        writeFileSync(sessPath, JSON.stringify(data, null, 2), 'utf-8');
-                    }
-                }
-                catch {
-                    // skip
-                }
-            }
-            break;
-        }
-        case 'backups': {
-            const backupBaseDir = join(cleoDir, 'backups');
-            if (existsSync(backupBaseDir)) {
-                for (const typeDir of readdirSync(backupBaseDir)) {
-                    const fullDir = join(backupBaseDir, typeDir);
-                    try {
-                        for (const file of readdirSync(fullDir)) {
-                            if (file.endsWith('.meta.json')) {
-                                const metaFilePath = join(fullDir, file);
-                                try {
-                                    const meta = JSON.parse(readFileSync(metaFilePath, 'utf-8'));
-                                    if (params.olderThan && meta.timestamp < params.olderThan) {
-                                        items.push(file.replace('.meta.json', ''));
-                                        if (!dryRun) {
-                                            unlinkSync(metaFilePath);
-                                            for (const bf of readdirSync(fullDir)) {
-                                                if (bf.includes(meta.backupId)) {
-                                                    try {
-                                                        unlinkSync(join(fullDir, bf));
-                                                    }
-                                                    catch {
-                                                        /* skip */
-                                                    }
-                                                }
-                                            }
-                                        }
-                                    }
-                                }
-                                catch {
-                                    /* skip */
-                                }
-                            }
-                        }
-                    }
-                    catch {
-                        /* skip */
-                    }
-                }
-            }
-            break;
-        }
-        case 'logs': {
-            if (!dryRun) {
-                const config = await loadConfig(projectRoot);
-                const pruneResult = await pruneAuditLog(cleoDir, config.logging);
-                prunedRows = pruneResult.rowsDeleted;
-                archivedRows = pruneResult.rowsArchived;
-                archivePath = pruneResult.archivePath;
-            }
-            // Remove legacy rotated JSON audit files
-            const auditPattern = /^audit-log-.*\.json$/;
-            if (existsSync(cleoDir)) {
-                for (const file of readdirSync(cleoDir)) {
-                    if (auditPattern.test(file)) {
-                        items.push(file);
-                        if (!dryRun) {
-                            try {
-                                unlinkSync(join(cleoDir, file));
-                            }
-                            catch {
-                                /* skip */
-                            }
-                        }
-                    }
-                }
-            }
-            break;
-        }
-        default:
-            throw new CleoError(ExitCode.INVALID_INPUT, `Invalid cleanup target: ${params.target}`);
-    }
-    return {
-        target: params.target,
-        deleted: dryRun ? 0 : items.length,
-        items,
-        dryRun,
-        prunedRows,
-        archivedRows,
-        archivePath,
-    };
-}
-//# sourceMappingURL=cleanup.js.map

package/dist/system/cleanup.js.map

@@ -1 +0,0 @@
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