@cleocode/core 2026.4.13 → 2026.4.15

package/dist/store/sqlite-data-accessor.js.map

@@ -1 +0,0 @@
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package/dist/store/sqlite.js

@@ -1,481 +0,0 @@
-/**
- * SQLite store via drizzle-orm/node-sqlite + node:sqlite (DatabaseSync).
- *
- * Zero native npm dependencies, 100% cross-platform (Windows/Linux/macOS).
- * File-backed SQLite with WAL mode for multi-process concurrent access.
- * Database stored at .cleo/tasks.db.
- *
- * Architecture: node:sqlite provides the synchronous file-backed SQLite engine,
- * wrapped via drizzle-orm/node-sqlite for a fully synchronous interface. All
- * writes go directly to disk through SQLite's native WAL mechanism -- no
- * saveToFile() pattern needed.
- *
- * @epic T4454
- * @task T4817 - node:sqlite engine migration (ADR-006, ADR-010)
- * @task T4810 - Data loss prevention guards
- */
-import { copyFileSync, existsSync, mkdirSync, renameSync, unlinkSync } from 'node:fs';
-import { createRequire } from 'node:module';
-const _require = createRequire(import.meta.url);
-const { DatabaseSync } = _require('node:sqlite');
-import { dirname, join, resolve, sep } from 'node:path';
-import { fileURLToPath } from 'node:url';
-import { eq } from 'drizzle-orm';
-import { drizzle } from 'drizzle-orm/node-sqlite';
-import { getLogger } from '../logger.js';
-import { getCleoDirAbsolute } from '../paths.js';
-import { createSafetyBackup, ensureColumns, migrateWithRetry, reconcileJournal, tableExists, } from './migration-manager.js';
-import { listSqliteBackups } from './sqlite-backup.js';
-import * as schema from './tasks-schema.js';
-/**
- * Open a node:sqlite DatabaseSync with CLEO standard pragmas.
- *
- * CRITICAL: WAL mode is verified, not just requested. If another process holds
- * an EXCLUSIVE lock in DELETE mode, PRAGMA journal_mode=WAL silently returns
- * 'delete'. This caused data loss (T5173) when concurrent processes opened
- * the same database — writes were silently dropped under lock contention.
- */
-export function openNativeDatabase(path, options) {
-    const db = new DatabaseSync(path, {
-        enableForeignKeyConstraints: true,
-        readOnly: options?.readonly ?? false,
-        timeout: options?.timeout ?? 5000,
-        allowExtension: options?.allowExtension ?? false,
-    });
-    // Set busy_timeout FIRST so WAL pragma can wait for locks
-    db.exec('PRAGMA busy_timeout=5000');
-    // Enable WAL for concurrent multi-process access (ADR-006, ADR-010)
-    if (options?.enableWal !== false) {
-        const MAX_WAL_RETRIES = 3;
-        const RETRY_DELAY_MS = 200;
-        let walSet = false;
-        for (let attempt = 1; attempt <= MAX_WAL_RETRIES; attempt++) {
-            db.exec('PRAGMA journal_mode=WAL');
-            // CRITICAL: Verify WAL was actually set — the PRAGMA returns the mode
-            // that was applied, which may be 'delete' if another connection holds a lock
-            const result = db.prepare('PRAGMA journal_mode').get();
-            const currentMode = result?.journal_mode?.toLowerCase?.() ?? 'unknown';
-            if (currentMode === 'wal') {
-                walSet = true;
-                break;
-            }
-            // WAL not set — another connection likely holds an EXCLUSIVE lock
-            if (attempt < MAX_WAL_RETRIES) {
-                // Sync sleep via Atomics for retry delay (node:sqlite is sync-only)
-                const buf = new SharedArrayBuffer(4);
-                Atomics.wait(new Int32Array(buf), 0, 0, RETRY_DELAY_MS * attempt);
-            }
-        }
-        if (!walSet) {
-            // Verify one final time
-            const finalResult = db.prepare('PRAGMA journal_mode').get();
-            const finalMode = finalResult?.journal_mode?.toLowerCase?.() ?? 'unknown';
-            if (finalMode !== 'wal') {
-                db.close();
-                throw new Error(`CRITICAL: Failed to set WAL journal mode after ${MAX_WAL_RETRIES} attempts. ` +
-                    `Database is in '${finalMode}' mode. Another process likely holds an EXCLUSIVE lock ` +
-                    `on ${path}. Refusing to open — concurrent writes in DELETE mode cause data loss. ` +
-                    `Kill other cleo processes and retry. (T5173)`);
-            }
-        }
-    }
-    // FK enforcement enabled in production. Disabled in vitest where test
-    // fixtures insert data without full referential integrity (orphan refs).
-    // VITEST env var is auto-set by vitest — no config needed.
-    if (!process.env.VITEST) {
-        db.exec('PRAGMA foreign_keys=ON');
-    }
-    return db;
-}
-/** Database file name within .cleo/ directory. */
-const DB_FILENAME = 'tasks.db';
-/** Schema version for newly created databases. Single source of truth. */
-export const SQLITE_SCHEMA_VERSION = '2.0.0';
-const SCHEMA_VERSION = SQLITE_SCHEMA_VERSION;
-/** Singleton state for lazy initialization. */
-let _db = null;
-let _nativeDb = null;
-let _dbPath = null;
-/** Guard against concurrent initialization (async migration). */
-let _initPromise = null;
-/** Guard: git-tracking check runs only once per process. */
-let _gitTrackingChecked = false;
-/**
- * Get the path to the SQLite database file.
- */
-export function getDbPath(cwd) {
-    return join(getCleoDirAbsolute(cwd), DB_FILENAME);
-}
-/**
- * Minimum task count in a backup to consider it a valid recovery source.
- * Prevents restoring from a backup that's also empty or nearly empty.
- * @task T5188
- */
-const MIN_BACKUP_TASK_COUNT = 10;
-/**
- * Auto-recover from backup if the database has tables but zero tasks
- * and a backup with data exists.
- *
- * Root cause (T5188): WAL/SHM files were tracked by git. On branch switch,
- * git overwrites the WAL with an empty (committed) version, discarding all
- * pending WAL writes. The main DB file (which may not have been checkpointed)
- * appears empty because all recent writes were in the WAL.
- *
- * This function runs after migrations (so tables exist) and before the
- * singleton is set. It checks if the tasks table is empty and a VACUUM INTO
- * backup exists with real data. If so, it closes the current connection,
- * replaces the DB file from backup, and re-opens.
- *
- * @task T5188
- */
-async function autoRecoverFromBackup(nativeDb, dbPath, cwd) {
-    const log = getLogger('sqlite');
-    try {
-        // Count tasks in current database
-        const countResult = nativeDb.prepare('SELECT COUNT(*) as cnt FROM tasks').get();
-        const taskCount = countResult?.cnt ?? 0;
-        if (taskCount > 0)
-            return; // Database has data, no recovery needed
-        // Database is empty — check for backups
-        const backups = listSqliteBackups(cwd);
-        if (backups.length === 0) {
-            // No backups available — this is a genuinely new database
-            return;
-        }
-        // Check the newest backup for task count
-        const newestBackup = backups[0];
-        // Open backup read-only to verify it has data
-        const backupDb = new DatabaseSync(newestBackup.path, { readOnly: true });
-        let backupTaskCount = 0;
-        try {
-            const backupCount = backupDb.prepare('SELECT COUNT(*) as cnt FROM tasks').get();
-            backupTaskCount = backupCount?.cnt ?? 0;
-        }
-        finally {
-            backupDb.close();
-        }
-        if (backupTaskCount < MIN_BACKUP_TASK_COUNT) {
-            // Backup also has very few tasks — not a reliable recovery source
-            return;
-        }
-        // We have an empty database AND a backup with data — auto-recover
-        log.warn({ dbPath, backupPath: newestBackup.path, backupTasks: backupTaskCount }, `Empty database detected with ${backupTaskCount}-task backup available. ` +
-            'Auto-recovering from backup. This likely happened because git-tracked ' +
-            'WAL/SHM files were overwritten during a branch switch (T5188).');
-        // Close current connection
-        nativeDb.close();
-        // Remove stale WAL/SHM files that may have been corrupted by git
-        const walPath = dbPath + '-wal';
-        const shmPath = dbPath + '-shm';
-        try {
-            unlinkSync(walPath);
-        }
-        catch {
-            /* may not exist */
-        }
-        try {
-            unlinkSync(shmPath);
-        }
-        catch {
-            /* may not exist */
-        }
-        // Restore from backup (atomic: copy to temp, rename)
-        const tempPath = dbPath + '.recovery-tmp';
-        copyFileSync(newestBackup.path, tempPath);
-        // Rename in place — on the same filesystem this is atomic
-        renameSync(tempPath, dbPath);
-        log.info({ dbPath, backupPath: newestBackup.path, restoredTasks: backupTaskCount }, 'Database auto-recovered from backup successfully.');
-        // Re-open the restored database — update the native singleton
-        const restoredNativeDb = openNativeDatabase(dbPath);
-        _nativeDb = restoredNativeDb;
-        // Re-run migrations on restored DB to ensure schema is current
-        const restoredDb = drizzle({ client: restoredNativeDb, schema });
-        runMigrations(restoredNativeDb, restoredDb);
-        // Update the singleton drizzle instance
-        _db = restoredDb;
-    }
-    catch (err) {
-        // Auto-recovery failure is non-fatal — log and continue with empty DB
-        log.error({ err, dbPath }, 'Auto-recovery from backup failed. Continuing with empty database.');
-    }
-}
-/**
- * Initialize the SQLite database (lazy, singleton).
- * Creates the database file and tables if they don't exist.
- * Returns the drizzle ORM instance (node-sqlite driver).
- *
- * Uses a promise guard so concurrent callers wait for the same
- * initialization to complete (migrations are async).
- */
-export async function getDb(cwd) {
-    const requestedPath = getDbPath(cwd);
-    // If singleton exists but points to different path, reset it
-    if (_db && _dbPath !== requestedPath) {
-        resetDbState();
-    }
-    if (_db)
-        return _db;
-    // If already initializing, wait for the in-flight init
-    if (_initPromise)
-        return _initPromise;
-    _initPromise = (async () => {
-        const dbPath = requestedPath;
-        _dbPath = dbPath;
-        // Ensure directory exists
-        mkdirSync(dirname(dbPath), { recursive: true });
-        // Open file-backed SQLite via node:sqlite with WAL mode
-        const nativeDb = openNativeDatabase(dbPath);
-        _nativeDb = nativeDb;
-        // Create drizzle ORM wrapper via node-sqlite
-        const db = drizzle({ client: nativeDb, schema });
-        // Run drizzle migrations (creates/updates tables)
-        runMigrations(nativeDb, db);
-        // Migration SQL contains PRAGMA foreign_keys=ON statements.
-        // In test environments, disable FKs after migration to allow test
-        // fixtures to insert data without full referential integrity.
-        if (process.env.VITEST) {
-            nativeDb.exec('PRAGMA foreign_keys=OFF');
-        }
-        // Seed schema version for new databases (no-op if already set)
-        nativeDb.exec(`INSERT OR IGNORE INTO schema_meta (key, value) VALUES ('schemaVersion', '${SCHEMA_VERSION}')`);
-        nativeDb.exec(`INSERT OR IGNORE INTO schema_meta (key, value) VALUES ('task_id_sequence', '{"counter":0,"lastId":"T000","checksum":"seed"}')`);
-        // Auto-recovery: detect empty database with available backups (T5188)
-        // Root cause: git-tracked WAL/SHM files get overwritten on branch switch,
-        // causing data loss when the WAL contained uncommitted writes.
-        await autoRecoverFromBackup(nativeDb, dbPath, cwd);
-        // Check if tasks.db or its WAL/SHM are dangerously tracked by git (ADR-013, T5158, T5188).
-        //
-        // As of ADR-013 §9 (2026-04-07) the canonical resolution is:
-        //   1. `.cleo/tasks.db` + WAL/SHM and `.cleo/brain.db` + WAL/SHM are
-        //      git-ignored at the project root and untracked via `git rm --cached`.
-        //   2. Recovery is provided by VACUUM INTO snapshots in
-        //      `.cleo/backups/sqlite/` (auto-rotated, 10 per DB, refreshed on
-        //      every `cleo session end` via the backup-session-end hook).
-        //   3. Full 4-file snapshots (including config.json + project-info.json)
-        //      are created on demand via `cleo backup add` / listed via
-        //      `cleo backup list` / restored via `cleo restore backup`.
-        //
-        // The warning below is retained as a regression guard: if someone
-        // accidentally re-stages the DB into project git, this warning fires at
-        // every process startup so they fix it before real data loss occurs.
-        if (!_gitTrackingChecked) {
-            _gitTrackingChecked = true;
-            try {
-                const { execFileSync } = await import('node:child_process');
-                const gitCwd = resolve(dbPath, '..', '..');
-                const filesToCheck = [dbPath, dbPath + '-wal', dbPath + '-shm'];
-                const log = getLogger('sqlite');
-                for (const fileToCheck of filesToCheck) {
-                    try {
-                        execFileSync('git', ['ls-files', '--error-unmatch', fileToCheck], {
-                            cwd: gitCwd,
-                            stdio: 'pipe',
-                        });
-                        // If we get here, the file IS tracked — that's dangerous.
-                        const basename = fileToCheck.split(/[\\/]/).pop();
-                        const relPath = fileToCheck.replace(gitCwd + sep, '');
-                        log.warn({ path: fileToCheck }, `${basename} is tracked by project git — this risks data loss on branch switch. ` +
-                            `Resolution (ADR-013 §9): \`git rm --cached ${relPath}\` and rely on ` +
-                            `\`.cleo/backups/sqlite/\` snapshots + \`cleo backup add\` for recovery.`);
-                    }
-                    catch {
-                        // Exit code 1 = not tracked = good
-                    }
-                }
-            }
-            catch {
-                // git not available, skip check
-            }
-        }
-        // Set singleton only after migrations complete
-        _db = db;
-        return db;
-    })();
-    try {
-        return await _initPromise;
-    }
-    finally {
-        _initPromise = null;
-    }
-}
-/**
- * Resolve the path to the drizzle migrations folder.
- * Works from both src/ (dev via tsx) and dist/ (compiled via esbuild bundle).
- *
- * - Source layout: __dirname = src/store/ → need ../../migrations/drizzle-tasks
- * - Bundled layout: __dirname = dist/     → need ../migrations/drizzle-tasks
- */
-export function resolveMigrationsFolder() {
-    const __filename = fileURLToPath(import.meta.url);
-    const __dirname = dirname(__filename);
-    // When esbuild bundles into dist/index.js, __dirname is dist/ (1 level deep).
-    // When running from source via tsx, __dirname is src/store/ (2 levels deep).
-    const isBundled = __dirname.endsWith('/dist') || __dirname.endsWith('\\dist');
-    const pkgRoot = isBundled ? join(__dirname, '..') : join(__dirname, '..', '..');
-    return join(pkgRoot, 'migrations', 'drizzle-tasks');
-}
-/**
- * Check whether a table exists in the SQLite database.
- */
-// tableExists, isSqliteBusy, retry constants — delegated to migration-manager.ts (T132)
-/** Re-export isSqliteBusy for external consumers. */
-export { isSqliteBusy } from './migration-manager.js';
-const REQUIRED_TASK_COLUMNS = [
-    { name: 'pipeline_stage', ddl: 'text' },
-    { name: 'assignee', ddl: 'text' },
-];
-/**
- * Required columns that MUST exist on the sessions table before the
- * wave0-schema-hardening migration runs.
- *
- * The wave0 migration rebuilds the sessions table via:
- *   INSERT INTO __new_sessions(..., provider_id, stats_json, resume_count, grade_mode)
- *   SELECT ..., provider_id, stats_json, resume_count, grade_mode FROM sessions
- *
- * If an existing sessions table (created before these columns were added) is
- * missing any of them, the SELECT fails with "no such column". ensureColumns()
- * adds them as NULL-able columns before the migration runs, making the SELECT safe.
- *
- * @see https://github.com/anthropics/cleo/issues/83
- */
-const REQUIRED_SESSION_COLUMNS = [
-    { name: 'provider_id', ddl: 'text' },
-    { name: 'stats_json', ddl: 'text' },
-    { name: 'resume_count', ddl: 'integer' },
-    { name: 'grade_mode', ddl: 'integer' },
-];
-/**
- * Run drizzle migrations to create/update tables.
- *
- * Delegates to shared migration-manager.ts for journal reconciliation,
- * retry logic, and column safety. See T132 for consolidation rationale.
- *
- * @task T4837 - ADR-012 drizzle-kit migration system
- * @task T5185 - Retry+backoff for SQLITE_BUSY during migrations
- * @task T132 - Unified migration system
- */
-function runMigrations(nativeDb, db) {
-    const migrationsFolder = resolveMigrationsFolder();
-    // Safety backup before any migration work
-    if (tableExists(nativeDb, 'tasks') && _dbPath) {
-        createSafetyBackup(_dbPath);
-    }
-    // Bootstrap baseline + reconcile stale journal entries
-    reconcileJournal(nativeDb, migrationsFolder, 'tasks', 'sqlite');
-    // Pre-migration column safety: ensure sessions table has the columns that the
-    // wave0-schema-hardening migration SELECTs during its table rebuild. Without
-    // this, upgrading from a pre-wave0 DB fails with "no such column: provider_id".
-    // Must run BEFORE migrateWithRetry so the migration's INSERT...SELECT succeeds.
-    // @see https://github.com/anthropics/cleo/issues/83
-    ensureColumns(nativeDb, 'sessions', REQUIRED_SESSION_COLUMNS, 'sqlite');
-    // Run pending migrations with SQLITE_BUSY retry
-    migrateWithRetry(db, migrationsFolder);
-    // Defensive column safety net
-    ensureColumns(nativeDb, 'tasks', REQUIRED_TASK_COLUMNS, 'sqlite');
-}
-/**
- * Close the database connection and release resources.
- */
-export function closeDb() {
-    if (_nativeDb) {
-        try {
-            if (_nativeDb.isOpen) {
-                _nativeDb.close();
-            }
-        }
-        catch {
-            // Ignore close errors
-        }
-        _nativeDb = null;
-    }
-    _db = null;
-    _dbPath = null;
-    _initPromise = null;
-}
-/**
- * Reset database singleton state without saving.
- * Used during migrations when database file is deleted and recreated.
- * Safe to call multiple times.
- */
-export function resetDbState() {
-    if (_nativeDb) {
-        try {
-            if (_nativeDb.isOpen) {
-                _nativeDb.close();
-            }
-        }
-        catch {
-            // Ignore close errors
-        }
-        _nativeDb = null;
-    }
-    _db = null;
-    _dbPath = null;
-    _initPromise = null;
-}
-/**
- * Get the schema version from the database.
- */
-export async function getSchemaVersion(cwd) {
-    const db = await getDb(cwd);
-    const result = await db
-        .select()
-        .from(schema.schemaMeta)
-        .where(eq(schema.schemaMeta.key, 'schemaVersion'));
-    return result[0]?.value ?? null;
-}
-/**
- * Check if the database file exists.
- */
-export function dbExists(cwd) {
-    return existsSync(getDbPath(cwd));
-}
-/**
- * Get the underlying node:sqlite DatabaseSync instance.
- * Useful for direct PRAGMA calls or raw SQL operations.
- * Returns null if the database hasn't been initialized.
- */
-export function getNativeDb() {
-    return _nativeDb;
-}
-/**
- * Get the underlying node:sqlite DatabaseSync instance for tasks.db.
- * Alias for getNativeDb() — mirrors getBrainNativeDb() naming convention.
- */
-export function getNativeTasksDb() {
-    return _nativeDb;
-}
-/**
- * Re-export schema for external use.
- */
-export { schema };
-/**
- * Close ALL database singletons (tasks.db, brain.db, nexus.db).
- *
- * Must be called before deleting temp directories on Windows, where
- * SQLite holds exclusive file handles on .db, .db-wal, and .db-shm files.
- * Safe to call even if some databases were never opened.
- *
- * @task T5508
- */
-export async function closeAllDatabases() {
-    // Close tasks.db
-    closeDb();
-    // Close brain.db (dynamic import to avoid circular deps)
-    try {
-        const { closeBrainDb } = await import('./brain-sqlite.js');
-        closeBrainDb();
-    }
-    catch {
-        /* module may not be loaded */
-    }
-    // Close nexus.db (dynamic import to avoid circular deps)
-    try {
-        const { closeNexusDb } = await import('./nexus-sqlite.js');
-        closeNexusDb();
-    }
-    catch {
-        /* module may not be loaded */
-    }
-}
-//# sourceMappingURL=sqlite.js.map

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package/dist/store/status-registry.js

@@ -1,8 +0,0 @@
-/**
- * Status Registry — re-exports from @cleocode/contracts.
- *
- * The canonical status definitions now live in @cleocode/contracts.
- * This file exists for backward compatibility within the store layer.
- */
-export { ADR_STATUSES, GATE_STATUSES, isValidStatus, LIFECYCLE_PIPELINE_STATUSES, LIFECYCLE_STAGE_STATUSES, MANIFEST_STATUSES, PIPELINE_STATUS_ICONS, SESSION_STATUSES, STAGE_STATUS_ICONS, STATUS_REGISTRY, TASK_STATUS_SYMBOLS_ASCII, TASK_STATUS_SYMBOLS_UNICODE, TASK_STATUSES, TERMINAL_PIPELINE_STATUSES, TERMINAL_STAGE_STATUSES, TERMINAL_TASK_STATUSES, } from '@cleocode/contracts';
-//# sourceMappingURL=status-registry.js.map

package/dist/store/status-registry.js.map

@@ -1 +0,0 @@
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