@cleocode/core 2026.4.13 → 2026.4.15

package/dist/store/db-helpers.js

@@ -1,224 +0,0 @@
-/**
- * Shared database helper functions for SQLite store modules.
- *
- * Consolidates upsert and dependency patterns used across
- * sqlite-data-accessor.ts, task-store.ts, and session-store.ts.
- *
- * @epic T4454
- */
-import { eq, inArray } from 'drizzle-orm';
-import * as schema from './tasks-schema.js';
-/**
- * Upsert a single task row into the tasks table.
- * Handles both active task upsert and archived task upsert via optional archiveFields.
- *
- * Defensively nulls out parentId if it references a non-existent task,
- * preventing orphaned FK violations from blocking bulk operations (T5034).
- */
-export async function upsertTask(db, row, archiveFields) {
-    // Defensive: null out parentId if it references a non-existent task (T5034)
-    if (row.parentId) {
-        const parent = await db
-            .select({ id: schema.tasks.id })
-            .from(schema.tasks)
-            .where(eq(schema.tasks.id, row.parentId))
-            .limit(1)
-            .all();
-        if (parent.length === 0) {
-            row = { ...row, parentId: null };
-        }
-    }
-    const values = archiveFields ? { ...row, ...archiveFields, status: 'archived' } : row;
-    const set = {
-        title: row.title,
-        description: row.description,
-        status: archiveFields ? 'archived' : row.status,
-        priority: row.priority,
-        type: row.type,
-        parentId: row.parentId,
-        phase: row.phase,
-        size: row.size,
-        position: row.position,
-        positionVersion: row.positionVersion,
-        labelsJson: row.labelsJson,
-        notesJson: row.notesJson,
-        acceptanceJson: row.acceptanceJson,
-        filesJson: row.filesJson,
-        origin: row.origin,
-        blockedBy: row.blockedBy,
-        epicLifecycle: row.epicLifecycle,
-        noAutoComplete: row.noAutoComplete,
-        createdAt: row.createdAt,
-        updatedAt: row.updatedAt,
-        completedAt: row.completedAt,
-        cancelledAt: row.cancelledAt,
-        cancellationReason: row.cancellationReason,
-        verificationJson: row.verificationJson,
-        createdBy: row.createdBy,
-        modifiedBy: row.modifiedBy,
-        sessionId: row.sessionId,
-        // T060: pipeline stage name (RCASD-IVTR+C)
-        pipelineStage: row.pipelineStage ?? null,
-        assignee: row.assignee ?? null,
-        // Always include archive metadata so unarchive clears stale values (T5034)
-        archivedAt: archiveFields?.archivedAt ?? null,
-        archiveReason: archiveFields?.archiveReason ?? null,
-        cycleTimeDays: archiveFields?.cycleTimeDays ?? null,
-    };
-    await db
-        .insert(schema.tasks)
-        .values(values)
-        .onConflictDoUpdate({ target: schema.tasks.id, set })
-        .run();
-}
-/**
- * Upsert a single session row into the sessions table.
- */
-export async function upsertSession(db, session) {
-    const sessionName = session.name || `session-${session.id}`;
-    const values = {
-        id: session.id,
-        name: sessionName,
-        status: session.status,
-        scopeJson: JSON.stringify(session.scope ?? { type: 'global' }),
-        currentTask: session.taskWork?.taskId ?? null,
-        taskStartedAt: session.taskWork?.setAt ?? null,
-        agent: session.agent ?? null,
-        notesJson: session.notes ? JSON.stringify(session.notes) : '[]',
-        tasksCompletedJson: session.tasksCompleted ? JSON.stringify(session.tasksCompleted) : '[]',
-        tasksCreatedJson: session.tasksCreated ? JSON.stringify(session.tasksCreated) : '[]',
-        handoffJson: session.handoffJson ?? null,
-        startedAt: session.startedAt,
-        endedAt: session.endedAt ?? null,
-        // Session chain fields (T4959)
-        previousSessionId: session.previousSessionId ?? null,
-        nextSessionId: session.nextSessionId ?? null,
-        agentIdentifier: session.agentIdentifier ?? null,
-        handoffConsumedAt: session.handoffConsumedAt ?? null,
-        handoffConsumedBy: session.handoffConsumedBy ?? null,
-        debriefJson: session.debriefJson ?? null,
-        // Session stats fields
-        statsJson: session.stats ? JSON.stringify(session.stats) : null,
-        resumeCount: session.resumeCount ?? null,
-        gradeMode: session.gradeMode ? 1 : null,
-    };
-    const { id: _id, ...setFields } = values;
-    await db
-        .insert(schema.sessions)
-        .values(values)
-        .onConflictDoUpdate({ target: schema.sessions.id, set: setFields })
-        .run();
-}
-/**
- * Update dependencies for a task: delete existing, then re-insert.
- * Optionally filters by a set of valid IDs.
- */
-export async function updateDependencies(db, taskId, depends, validIds) {
-    await db.delete(schema.taskDependencies).where(eq(schema.taskDependencies.taskId, taskId)).run();
-    for (const depId of depends) {
-        if (!validIds || validIds.has(depId)) {
-            await db
-                .insert(schema.taskDependencies)
-                .values({ taskId, dependsOn: depId })
-                .onConflictDoNothing()
-                .run();
-        }
-    }
-}
-/**
- * Batch-update dependencies for multiple tasks in two bulk SQL operations.
- * Replaces per-task updateDependencies() loops with:
- * 1. Single DELETE for all task IDs
- * 2. Single INSERT for all dependency rows
- *
- * Callers are responsible for wrapping this in a transaction if needed.
- */
-export async function batchUpdateDependencies(db, tasks, validIds) {
-    if (tasks.length === 0)
-        return;
-    const allTaskIds = tasks.map((t) => t.taskId);
-    // Single DELETE: remove all existing dependencies for these tasks
-    await db
-        .delete(schema.taskDependencies)
-        .where(inArray(schema.taskDependencies.taskId, allTaskIds))
-        .run();
-    // Collect all valid dependency rows
-    const allDepRows = [];
-    for (const { taskId, deps } of tasks) {
-        for (const depId of deps) {
-            if (!validIds || validIds.has(depId)) {
-                allDepRows.push({ taskId, dependsOn: depId });
-            }
-        }
-    }
-    // Single INSERT for all dependency rows
-    if (allDepRows.length > 0) {
-        await db.insert(schema.taskDependencies).values(allDepRows).onConflictDoNothing().run();
-    }
-}
-/**
- * Batch-load dependencies for a list of tasks and apply them in-place.
- * Uses inArray for efficient querying. Optionally filters by a set of valid IDs.
- */
-export async function loadDependenciesForTasks(db, tasks, validationIds) {
-    if (tasks.length === 0)
-        return;
-    const taskIds = tasks.map((t) => t.id);
-    const taskIdSet = validationIds ?? new Set(taskIds);
-    const allDeps = await db
-        .select()
-        .from(schema.taskDependencies)
-        .where(inArray(schema.taskDependencies.taskId, taskIds))
-        .all();
-    const depMap = new Map();
-    for (const dep of allDeps) {
-        if (taskIdSet.has(dep.dependsOn)) {
-            let arr = depMap.get(dep.taskId);
-            if (!arr) {
-                arr = [];
-                depMap.set(dep.taskId, arr);
-            }
-            arr.push(dep.dependsOn);
-        }
-    }
-    for (const task of tasks) {
-        const deps = depMap.get(task.id);
-        if (deps && deps.length > 0) {
-            task.depends = deps;
-        }
-    }
-}
-/**
- * Batch-load relations for a list of tasks and apply them in-place.
- * Mirrors loadDependenciesForTasks pattern for task_relations table (T5168).
- */
-export async function loadRelationsForTasks(db, tasks) {
-    if (tasks.length === 0)
-        return;
-    const taskIds = tasks.map((t) => t.id);
-    const allRels = await db
-        .select()
-        .from(schema.taskRelations)
-        .where(inArray(schema.taskRelations.taskId, taskIds))
-        .all();
-    const relMap = new Map();
-    for (const rel of allRels) {
-        let arr = relMap.get(rel.taskId);
-        if (!arr) {
-            arr = [];
-            relMap.set(rel.taskId, arr);
-        }
-        arr.push({
-            taskId: rel.relatedTo,
-            type: rel.relationType,
-            reason: rel.reason ?? undefined,
-        });
-    }
-    for (const task of tasks) {
-        const relations = relMap.get(task.id);
-        if (relations && relations.length > 0) {
-            task.relates = relations;
-        }
-    }
-}
-//# sourceMappingURL=db-helpers.js.map

package/dist/store/db-helpers.js.map

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package/dist/store/export.js

@@ -1,155 +0,0 @@
-/**
- * Export package generation for task data interchange.
- * Ported from lib/data/export.sh
- *
- * @epic T4454
- * @task T4530
- */
-import { createHash } from 'node:crypto';
-/** Export format version. */
-const EXPORT_FORMAT_VERSION = '1.0.0';
-/**
- * Calculate SHA-256 checksum for export integrity (truncated to 16 hex chars).
- */
-export function calculateExportChecksum(tasksJson) {
-    const canonical = JSON.stringify(JSON.parse(tasksJson));
-    return createHash('sha256').update(canonical).digest('hex').slice(0, 16);
-}
-/**
- * Verify export package checksum.
- */
-export function verifyExportChecksum(pkg) {
-    const tasksJson = JSON.stringify(pkg.tasks);
-    const calculated = calculateExportChecksum(tasksJson);
-    return pkg._meta.checksum === calculated;
-}
-/**
- * Build ID map from tasks.
- */
-export function buildIdMap(tasks) {
-    const map = {};
-    for (const task of tasks) {
-        map[task.id] = {
-            type: task.type ?? 'task',
-            title: task.title,
-            status: task.status,
-            parentId: task.parentId ?? null,
-            depends: task.depends ?? [],
-        };
-    }
-    return map;
-}
-/**
- * Build relationship graph from tasks.
- */
-export function buildRelationshipGraph(tasks) {
-    const exportedIds = new Set(tasks.map((t) => t.id));
-    const hierarchy = {};
-    const dependencies = {};
-    for (const task of tasks) {
-        // Hierarchy
-        if (task.parentId && exportedIds.has(task.parentId)) {
-            if (!hierarchy[task.parentId])
-                hierarchy[task.parentId] = [];
-            hierarchy[task.parentId].push(task.id);
-        }
-        // Dependencies
-        if (task.depends?.length) {
-            const internalDeps = task.depends.filter((d) => exportedIds.has(d));
-            if (internalDeps.length > 0) {
-                dependencies[task.id] = internalDeps;
-            }
-        }
-    }
-    // Roots: tasks with no parent in export and no deps in export
-    const roots = tasks
-        .filter((t) => {
-        const hasParentInExport = t.parentId && exportedIds.has(t.parentId);
-        const hasDepsInExport = t.depends?.some((d) => exportedIds.has(d));
-        return !hasParentInExport && !hasDepsInExport;
-    })
-        .map((t) => t.id);
-    return { hierarchy, dependencies, roots };
-}
-/**
- * Build a complete export package.
- */
-export function buildExportPackage(tasks, options) {
-    const now = new Date().toISOString();
-    const projectName = options.projectName ?? 'unknown';
-    const maxId = tasks.reduce((max, t) => {
-        const num = parseInt(t.id.replace('T', ''), 10);
-        return num > max ? num : max;
-    }, 0);
-    const idMap = buildIdMap(tasks);
-    const relationshipGraph = buildRelationshipGraph(tasks);
-    const tasksJson = JSON.stringify(tasks);
-    const checksum = calculateExportChecksum(tasksJson);
-    return {
-        $schema: 'https://cleo-dev.com/schemas/v1/export-package.schema.json',
-        _meta: {
-            format: 'cleo-export',
-            version: EXPORT_FORMAT_VERSION,
-            exportedAt: now,
-            source: {
-                project: projectName,
-                cleo_version: options.cleoVersion ?? '0.95.0',
-                nextId: maxId + 1,
-            },
-            checksum,
-            taskCount: tasks.length,
-            exportMode: options.mode,
-        },
-        selection: {
-            mode: options.mode,
-            rootTaskIds: options.rootTaskIds,
-            includeChildren: options.includeChildren,
-            filters: options.filters,
-        },
-        idMap,
-        tasks,
-        relationshipGraph,
-    };
-}
-/**
- * Export a single task.
- */
-export function exportSingle(taskId, allTasks, projectName) {
-    const task = allTasks.find((t) => t.id === taskId);
-    if (!task)
-        return null;
-    return buildExportPackage([task], {
-        mode: 'single',
-        rootTaskIds: [taskId],
-        includeChildren: false,
-        projectName,
-    });
-}
-/**
- * Export a subtree (task + all descendants).
- */
-export function exportSubtree(rootId, allTasks, projectName) {
-    const root = allTasks.find((t) => t.id === rootId);
-    if (!root)
-        return null;
-    // Collect all descendants via BFS
-    const collected = new Map();
-    const queue = [rootId];
-    while (queue.length > 0) {
-        const id = queue.shift();
-        const task = allTasks.find((t) => t.id === id);
-        if (!task || collected.has(id))
-            continue;
-        collected.set(id, task);
-        const children = allTasks.filter((t) => t.parentId === id);
-        queue.push(...children.map((c) => c.id));
-    }
-    const tasks = [...collected.values()];
-    return buildExportPackage(tasks, {
-        mode: 'subtree',
-        rootTaskIds: [rootId],
-        includeChildren: true,
-        projectName,
-    });
-}
-//# sourceMappingURL=export.js.map

package/dist/store/export.js.map

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package/dist/store/file-utils.js

@@ -1,270 +0,0 @@
-/**
- * File utility helpers for CLEO data access.
- *
- * File utility helpers for CLEO data access including atomic writes,
- * file locking, and backup rotation.
- *
- * @task T4833
- * @epic T4654
- */
-import { randomBytes } from 'node:crypto';
-import { existsSync, mkdirSync, readdirSync, readFileSync, renameSync, unlinkSync, writeFileSync, } from 'node:fs';
-import { basename, dirname, join } from 'node:path';
-import * as lockfile from 'proper-lockfile';
-/**
- * Maximum number of operational backups to keep.
- */
-const MAX_BACKUPS = 10;
-/**
- * Create a numbered backup of a file (Tier 1 operational backup).
- */
-function rotateBackup(filePath) {
-    const dir = dirname(filePath);
-    const name = basename(filePath);
-    const backupDir = join(dir, '.backups');
-    if (!existsSync(backupDir)) {
-        mkdirSync(backupDir, { recursive: true });
-    }
-    for (let i = MAX_BACKUPS; i >= 1; i--) {
-        const current = join(backupDir, `${name}.${i}`);
-        if (i === MAX_BACKUPS) {
-            try {
-                unlinkSync(current);
-            }
-            catch {
-                /* May not exist */
-            }
-        }
-        else {
-            const next = join(backupDir, `${name}.${i + 1}`);
-            try {
-                if (existsSync(current))
-                    renameSync(current, next);
-            }
-            catch {
-                /* Ignore rename errors */
-            }
-        }
-    }
-    try {
-        const content = readFileSync(filePath, 'utf-8');
-        writeFileSync(join(backupDir, `${name}.1`), content, 'utf-8');
-    }
-    catch {
-        /* Non-fatal */
-    }
-}
-/**
- * Write a JSON file atomically with backup rotation.
- *
- * Pattern: write temp -> backup original -> rename temp to target
- *
- * @param filePath - Target file path
- * @param data - Data to serialize as JSON
- * @param indent - JSON indentation (default: 2 spaces)
- */
-export function writeJsonFileAtomic(filePath, data, indent = 2) {
-    const dir = dirname(filePath);
-    const tempPath = join(dir, `.${basename(filePath)}.${randomBytes(6).toString('hex')}.tmp`);
-    const content = JSON.stringify(data, null, indent) + '\n';
-    writeFileSync(tempPath, content, 'utf-8');
-    try {
-        if (existsSync(filePath)) {
-            rotateBackup(filePath);
-        }
-        renameSync(tempPath, filePath);
-    }
-    catch (error) {
-        try {
-            unlinkSync(tempPath);
-        }
-        catch {
-            /* Ignore cleanup errors */
-        }
-        throw error;
-    }
-}
-/**
- * Read a JSON file, returning parsed content or null if not found.
- *
- * @param filePath - Path to the JSON file
- */
-export function readJsonFile(filePath) {
-    try {
-        const content = readFileSync(filePath, 'utf-8');
-        return JSON.parse(content);
-    }
-    catch (error) {
-        if (error.code === 'ENOENT') {
-            return null;
-        }
-        throw error;
-    }
-}
-/**
- * Get the path to a CLEO data file within a project root.
- *
- * @param projectRoot - Root directory of the project
- * @param filename - Filename within .cleo/ directory
- */
-export function getDataPath(projectRoot, filename) {
-    return join(projectRoot, '.cleo', filename);
-}
-/**
- * Resolve the project root directory.
- * Checks CLEO_ROOT env, then falls back to cwd.
- */
-export function resolveProjectRoot() {
-    return process.env['CLEO_ROOT'] || process.cwd();
-}
-/**
- * Default lock options matching bash flock behavior
- */
-const LOCK_OPTIONS = {
-    retries: {
-        retries: 5,
-        factor: 2,
-        minTimeout: 100,
-        maxTimeout: 5000,
-    },
-    stale: 30000, // 30s stale lock timeout
-};
-/**
- * Lock ordering to prevent deadlocks.
- * Always acquire locks in this order.
- */
-const LOCK_ORDER = {
-    'tasks.db': 1,
-    'config.json': 2,
-};
-function getLockPriority(filePath) {
-    const name = basename(filePath);
-    return LOCK_ORDER[name] ?? 99;
-}
-/**
- * Read and write a JSON file with exclusive locking.
- *
- * Acquires a cross-process lock, reads current state, applies the
- * transform function, validates, and writes back atomically.
- *
- * @param filePath - File to lock and modify
- * @param transform - Function that receives current data and returns new data
- * @returns The transformed data
- */
-export async function withLock(filePath, transform) {
-    const dir = dirname(filePath);
-    if (!existsSync(dir)) {
-        mkdirSync(dir, { recursive: true });
-    }
-    // Ensure file exists for locking (proper-lockfile needs the file to exist)
-    if (!existsSync(filePath)) {
-        writeFileSync(filePath, '', 'utf-8');
-    }
-    let release;
-    try {
-        release = await lockfile.lock(filePath, LOCK_OPTIONS);
-        const current = readJsonFile(filePath);
-        const updated = transform(current);
-        writeJsonFileAtomic(filePath, updated);
-        return updated;
-    }
-    finally {
-        if (release) {
-            await release();
-        }
-    }
-}
-/**
- * Acquire a file lock and execute an operation.
- * Unlike withLock, this doesn't read/write the file - caller manages I/O.
- * The return type R is independent of the file content type.
- */
-export async function withFileLock(filePath, operation) {
-    const dir = dirname(filePath);
-    if (!existsSync(dir)) {
-        mkdirSync(dir, { recursive: true });
-    }
-    if (!existsSync(filePath)) {
-        writeFileSync(filePath, '', 'utf-8');
-    }
-    let release;
-    try {
-        release = await lockfile.lock(filePath, LOCK_OPTIONS);
-        return await operation();
-    }
-    finally {
-        if (release) {
-            await release();
-        }
-    }
-}
-/**
- * Acquire locks on multiple files in correct order.
- * Used for operations that need to modify multiple files atomically
- * (e.g., coordinated updates across task data and config).
- *
- * @param filePaths - Files to lock
- * @param operation - Function to execute while locks are held
- */
-export async function withMultiLock(filePaths, operation) {
-    // Sort by lock priority to prevent deadlocks
-    const sorted = [...filePaths].sort((a, b) => getLockPriority(a) - getLockPriority(b));
-    const releases = [];
-    try {
-        // Acquire locks in order
-        for (const fp of sorted) {
-            if (!existsSync(dirname(fp))) {
-                mkdirSync(dirname(fp), { recursive: true });
-            }
-            if (!existsSync(fp)) {
-                writeFileSync(fp, '', 'utf-8');
-            }
-            const release = await lockfile.lock(fp, LOCK_OPTIONS);
-            releases.push(release);
-        }
-        return await operation();
-    }
-    finally {
-        // Release in reverse order
-        for (const release of releases.reverse()) {
-            try {
-                await release();
-            }
-            catch {
-                // Ignore release errors
-            }
-        }
-    }
-}
-/**
- * Check if a CLEO project directory exists at the given path
- */
-export function isProjectInitialized(projectRoot) {
-    const cleoDir = join(projectRoot, '.cleo');
-    return existsSync(cleoDir) && existsSync(join(cleoDir, 'tasks.db'));
-}
-/**
- * List backup files for a given data file
- */
-export function listBackups(filePath) {
-    const dir = dirname(filePath);
-    const name = basename(filePath);
-    const backupDir = join(dir, '.backups');
-    if (!existsSync(backupDir)) {
-        return [];
-    }
-    try {
-        return readdirSync(backupDir)
-            .filter((f) => f.startsWith(`${name}.`) && /\.\d+$/.test(f))
-            .sort((a, b) => {
-            const numA = parseInt(a.split('.').pop(), 10);
-            const numB = parseInt(b.split('.').pop(), 10);
-            return numA - numB;
-        })
-            .map((f) => join(backupDir, f));
-    }
-    catch {
-        return [];
-    }
-}
-//# sourceMappingURL=file-utils.js.map

package/dist/store/file-utils.js.map

@@ -1 +0,0 @@
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