@apollo-annotation/jbrowse-plugin-apollo 0.3.11 → 0.3.12

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (395) hide show
  1. package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts +6 -0
  2. package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts.map +1 -0
  3. package/dist/ApolloInternetAccount/components/LoginButtons.d.ts +5 -0
  4. package/dist/ApolloInternetAccount/components/LoginButtons.d.ts.map +1 -0
  5. package/dist/ApolloInternetAccount/components/LoginIcons.d.ts +4 -0
  6. package/dist/ApolloInternetAccount/components/LoginIcons.d.ts.map +1 -0
  7. package/dist/ApolloInternetAccount/index.d.ts +3 -0
  8. package/dist/ApolloInternetAccount/index.d.ts.map +1 -0
  9. package/dist/ApolloJobModel.d.ts +53 -0
  10. package/dist/ApolloJobModel.d.ts.map +1 -0
  11. package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts +12 -0
  12. package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts.map +1 -0
  13. package/dist/ApolloRefNameAliasAdapter/index.d.ts +3 -0
  14. package/dist/ApolloRefNameAliasAdapter/index.d.ts.map +1 -0
  15. package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts +27 -0
  16. package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts.map +1 -0
  17. package/dist/ApolloSequenceAdapter/index.d.ts +3 -0
  18. package/dist/ApolloSequenceAdapter/index.d.ts.map +1 -0
  19. package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts +13 -0
  20. package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts.map +1 -0
  21. package/dist/ApolloTextSearchAdapter/index.d.ts +3 -0
  22. package/dist/ApolloTextSearchAdapter/index.d.ts.map +1 -0
  23. package/dist/BackendDrivers/BackendDriver.d.ts +26 -0
  24. package/dist/BackendDrivers/BackendDriver.d.ts.map +1 -0
  25. package/dist/BackendDrivers/CollaborationServerDriver.d.ts +206 -0
  26. package/dist/BackendDrivers/CollaborationServerDriver.d.ts.map +1 -0
  27. package/dist/BackendDrivers/DesktopFileDriver.d.ts +160 -0
  28. package/dist/BackendDrivers/DesktopFileDriver.d.ts.map +1 -0
  29. package/dist/BackendDrivers/InMemoryFileDriver.d.ts +162 -0
  30. package/dist/BackendDrivers/InMemoryFileDriver.d.ts.map +1 -0
  31. package/dist/BackendDrivers/index.d.ts +5 -0
  32. package/dist/BackendDrivers/index.d.ts.map +1 -0
  33. package/dist/ChangeManager.d.ts +24 -0
  34. package/dist/ChangeManager.d.ts.map +1 -0
  35. package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts +6 -0
  36. package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts.map +1 -0
  37. package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts +12 -0
  38. package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts.map +1 -0
  39. package/dist/FeatureDetailsWidget/AttributeKey.d.ts +4 -0
  40. package/dist/FeatureDetailsWidget/AttributeKey.d.ts.map +1 -0
  41. package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts +6 -0
  42. package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts.map +1 -0
  43. package/dist/FeatureDetailsWidget/Attributes.d.ts +9 -0
  44. package/dist/FeatureDetailsWidget/Attributes.d.ts.map +1 -0
  45. package/dist/FeatureDetailsWidget/BasicInformation.d.ts +8 -0
  46. package/dist/FeatureDetailsWidget/BasicInformation.d.ts.map +1 -0
  47. package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts +9 -0
  48. package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts.map +1 -0
  49. package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts +5 -0
  50. package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts.map +1 -0
  51. package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts +7 -0
  52. package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts.map +1 -0
  53. package/dist/FeatureDetailsWidget/NumberTextField.d.ts +8 -0
  54. package/dist/FeatureDetailsWidget/NumberTextField.d.ts.map +1 -0
  55. package/dist/FeatureDetailsWidget/Sequence.d.ts +10 -0
  56. package/dist/FeatureDetailsWidget/Sequence.d.ts.map +1 -0
  57. package/dist/FeatureDetailsWidget/StringTextField.d.ts +8 -0
  58. package/dist/FeatureDetailsWidget/StringTextField.d.ts.map +1 -0
  59. package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts +10 -0
  60. package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts.map +1 -0
  61. package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts +9 -0
  62. package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts.map +1 -0
  63. package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts +6 -0
  64. package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts.map +1 -0
  65. package/dist/FeatureDetailsWidget/index.d.ts +5 -0
  66. package/dist/FeatureDetailsWidget/index.d.ts.map +1 -0
  67. package/dist/FeatureDetailsWidget/model.d.ts +123 -0
  68. package/dist/FeatureDetailsWidget/model.d.ts.map +1 -0
  69. package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts +5 -0
  70. package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts.map +1 -0
  71. package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts +7 -0
  72. package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts.map +1 -0
  73. package/dist/LinearApolloDisplay/components/index.d.ts +2 -0
  74. package/dist/LinearApolloDisplay/components/index.d.ts.map +1 -0
  75. package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts +4 -0
  76. package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts.map +1 -0
  77. package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts +3 -0
  78. package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
  79. package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts +3 -0
  80. package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts.map +1 -0
  81. package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts +26 -0
  82. package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts.map +1 -0
  83. package/dist/LinearApolloDisplay/glyphs/index.d.ts +4 -0
  84. package/dist/LinearApolloDisplay/glyphs/index.d.ts.map +1 -0
  85. package/dist/LinearApolloDisplay/glyphs/util.d.ts +12 -0
  86. package/dist/LinearApolloDisplay/glyphs/util.d.ts.map +1 -0
  87. package/dist/LinearApolloDisplay/index.d.ts +3 -0
  88. package/dist/LinearApolloDisplay/index.d.ts.map +1 -0
  89. package/dist/LinearApolloDisplay/stateModel/base.d.ts +254 -0
  90. package/dist/LinearApolloDisplay/stateModel/base.d.ts.map +1 -0
  91. package/dist/LinearApolloDisplay/stateModel/index.d.ts +349 -0
  92. package/dist/LinearApolloDisplay/stateModel/index.d.ts.map +1 -0
  93. package/dist/LinearApolloDisplay/stateModel/layouts.d.ts +273 -0
  94. package/dist/LinearApolloDisplay/stateModel/layouts.d.ts.map +1 -0
  95. package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts +656 -0
  96. package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts.map +1 -0
  97. package/dist/LinearApolloDisplay/stateModel/rendering.d.ts +300 -0
  98. package/dist/LinearApolloDisplay/stateModel/rendering.d.ts.map +1 -0
  99. package/dist/LinearApolloDisplay/types.d.ts +2 -0
  100. package/dist/LinearApolloDisplay/types.d.ts.map +1 -0
  101. package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts +7 -0
  102. package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts.map +1 -0
  103. package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts +2 -0
  104. package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts.map +1 -0
  105. package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts +6 -0
  106. package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts.map +1 -0
  107. package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts +5 -0
  108. package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts.map +1 -0
  109. package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts +4 -0
  110. package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts.map +1 -0
  111. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts +236 -0
  112. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts.map +1 -0
  113. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts +245 -0
  114. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts.map +1 -0
  115. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts +246 -0
  116. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts.map +1 -0
  117. package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts +7 -0
  118. package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts.map +1 -0
  119. package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts +8 -0
  120. package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts.map +1 -0
  121. package/dist/LinearApolloSixFrameDisplay/components/index.d.ts +3 -0
  122. package/dist/LinearApolloSixFrameDisplay/components/index.d.ts.map +1 -0
  123. package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts +3 -0
  124. package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
  125. package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts +20 -0
  126. package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts.map +1 -0
  127. package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts +2 -0
  128. package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts.map +1 -0
  129. package/dist/LinearApolloSixFrameDisplay/index.d.ts +3 -0
  130. package/dist/LinearApolloSixFrameDisplay/index.d.ts.map +1 -0
  131. package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts +257 -0
  132. package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts.map +1 -0
  133. package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts +355 -0
  134. package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts.map +1 -0
  135. package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts +283 -0
  136. package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts.map +1 -0
  137. package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts +668 -0
  138. package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts.map +1 -0
  139. package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts +306 -0
  140. package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts.map +1 -0
  141. package/dist/LinearApolloSixFrameDisplay/types.d.ts +2 -0
  142. package/dist/LinearApolloSixFrameDisplay/types.d.ts.map +1 -0
  143. package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts +8 -0
  144. package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts.map +1 -0
  145. package/dist/OntologyManager/OntologyStore/fulltext.d.ts +27 -0
  146. package/dist/OntologyManager/OntologyStore/fulltext.d.ts.map +1 -0
  147. package/dist/OntologyManager/OntologyStore/index.d.ts +93 -0
  148. package/dist/OntologyManager/OntologyStore/index.d.ts.map +1 -0
  149. package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts +71 -0
  150. package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts.map +1 -0
  151. package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts +11 -0
  152. package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts.map +1 -0
  153. package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts +107 -0
  154. package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts.map +1 -0
  155. package/dist/OntologyManager/OntologyStore/prefixes.d.ts +20 -0
  156. package/dist/OntologyManager/OntologyStore/prefixes.d.ts.map +1 -0
  157. package/dist/OntologyManager/util.d.ts +4 -0
  158. package/dist/OntologyManager/util.d.ts.map +1 -0
  159. package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts +6 -0
  160. package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts.map +1 -0
  161. package/dist/TabularEditor/HybridGrid/Feature.d.ts +13 -0
  162. package/dist/TabularEditor/HybridGrid/Feature.d.ts.map +1 -0
  163. package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts +6 -0
  164. package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts.map +1 -0
  165. package/dist/TabularEditor/HybridGrid/Highlight.d.ts +6 -0
  166. package/dist/TabularEditor/HybridGrid/Highlight.d.ts.map +1 -0
  167. package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts +14 -0
  168. package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts.map +1 -0
  169. package/dist/TabularEditor/HybridGrid/NumberCell.d.ts +8 -0
  170. package/dist/TabularEditor/HybridGrid/NumberCell.d.ts.map +1 -0
  171. package/dist/TabularEditor/HybridGrid/ToolBar.d.ts +5 -0
  172. package/dist/TabularEditor/HybridGrid/ToolBar.d.ts.map +1 -0
  173. package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts +11 -0
  174. package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts.map +1 -0
  175. package/dist/TabularEditor/HybridGrid/index.d.ts +2 -0
  176. package/dist/TabularEditor/HybridGrid/index.d.ts.map +1 -0
  177. package/dist/TabularEditor/TabularEditorPane.d.ts +5 -0
  178. package/dist/TabularEditor/TabularEditorPane.d.ts.map +1 -0
  179. package/dist/TabularEditor/index.d.ts +3 -0
  180. package/dist/TabularEditor/index.d.ts.map +1 -0
  181. package/dist/TabularEditor/model.d.ts +17 -0
  182. package/dist/TabularEditor/model.d.ts.map +1 -0
  183. package/dist/TabularEditor/types.d.ts +4 -0
  184. package/dist/TabularEditor/types.d.ts.map +1 -0
  185. package/dist/components/AddAssembly.d.ts +10 -0
  186. package/dist/components/AddAssembly.d.ts.map +1 -0
  187. package/dist/components/AddAssemblyAliases.d.ts +10 -0
  188. package/dist/components/AddAssemblyAliases.d.ts.map +1 -0
  189. package/dist/components/AddChildFeature.d.ts +13 -0
  190. package/dist/components/AddChildFeature.d.ts.map +1 -0
  191. package/dist/components/AddFeature.d.ts +12 -0
  192. package/dist/components/AddFeature.d.ts.map +1 -0
  193. package/dist/components/AddRefSeqAliases.d.ts +10 -0
  194. package/dist/components/AddRefSeqAliases.d.ts.map +1 -0
  195. package/dist/components/CopyFeature.d.ts +13 -0
  196. package/dist/components/CopyFeature.d.ts.map +1 -0
  197. package/dist/components/CreateApolloAnnotation.d.ts +20 -0
  198. package/dist/components/CreateApolloAnnotation.d.ts.map +1 -0
  199. package/dist/components/DeleteAssembly.d.ts +10 -0
  200. package/dist/components/DeleteAssembly.d.ts.map +1 -0
  201. package/dist/components/DeleteFeature.d.ts +15 -0
  202. package/dist/components/DeleteFeature.d.ts.map +1 -0
  203. package/dist/components/Dialog.d.ts +7 -0
  204. package/dist/components/Dialog.d.ts.map +1 -0
  205. package/dist/components/DownloadGFF3.d.ts +8 -0
  206. package/dist/components/DownloadGFF3.d.ts.map +1 -0
  207. package/dist/components/DuplicateTranscript.d.ts +15 -0
  208. package/dist/components/DuplicateTranscript.d.ts.map +1 -0
  209. package/dist/components/EditZoomThresholdDialog.d.ts +11 -0
  210. package/dist/components/EditZoomThresholdDialog.d.ts.map +1 -0
  211. package/dist/components/FilterFeatures.d.ts +10 -0
  212. package/dist/components/FilterFeatures.d.ts.map +1 -0
  213. package/dist/components/FilterTranscripts.d.ts +10 -0
  214. package/dist/components/FilterTranscripts.d.ts.map +1 -0
  215. package/dist/components/ImportFeatures.d.ts +10 -0
  216. package/dist/components/ImportFeatures.d.ts.map +1 -0
  217. package/dist/components/LogOut.d.ts +8 -0
  218. package/dist/components/LogOut.d.ts.map +1 -0
  219. package/dist/components/ManageChecks.d.ts +8 -0
  220. package/dist/components/ManageChecks.d.ts.map +1 -0
  221. package/dist/components/ManageUsers.d.ts +10 -0
  222. package/dist/components/ManageUsers.d.ts.map +1 -0
  223. package/dist/components/MergeExons.d.ts +15 -0
  224. package/dist/components/MergeExons.d.ts.map +1 -0
  225. package/dist/components/MergeTranscripts.d.ts +15 -0
  226. package/dist/components/MergeTranscripts.d.ts.map +1 -0
  227. package/dist/components/OntologyTermAutocomplete.d.ts +25 -0
  228. package/dist/components/OntologyTermAutocomplete.d.ts.map +1 -0
  229. package/dist/components/OntologyTermMultiSelect.d.ts +12 -0
  230. package/dist/components/OntologyTermMultiSelect.d.ts.map +1 -0
  231. package/dist/components/OpenLocalFile.d.ts +15 -0
  232. package/dist/components/OpenLocalFile.d.ts.map +1 -0
  233. package/dist/components/SplitExon.d.ts +15 -0
  234. package/dist/components/SplitExon.d.ts.map +1 -0
  235. package/dist/components/ViewChangeLog.d.ts +8 -0
  236. package/dist/components/ViewChangeLog.d.ts.map +1 -0
  237. package/dist/components/ViewCheckResults.d.ts +8 -0
  238. package/dist/components/ViewCheckResults.d.ts.map +1 -0
  239. package/dist/components/index.d.ts +21 -0
  240. package/dist/components/index.d.ts.map +1 -0
  241. package/dist/extensions/annotationFromJBrowseFeature.d.ts +6 -0
  242. package/dist/extensions/annotationFromJBrowseFeature.d.ts.map +1 -0
  243. package/dist/extensions/annotationFromPileup.d.ts +3 -0
  244. package/dist/extensions/annotationFromPileup.d.ts.map +1 -0
  245. package/dist/extensions/index.d.ts +3 -0
  246. package/dist/extensions/index.d.ts.map +1 -0
  247. package/dist/index.esm.js +843 -1330
  248. package/dist/index.esm.js.map +1 -1
  249. package/dist/jbrowse-plugin-apollo.cjs.development.js +919 -1455
  250. package/dist/jbrowse-plugin-apollo.cjs.development.js.map +1 -1
  251. package/dist/jbrowse-plugin-apollo.cjs.production.min.js +1 -1
  252. package/dist/jbrowse-plugin-apollo.cjs.production.min.js.map +1 -1
  253. package/dist/jbrowse-plugin-apollo.umd.development.js +46351 -63687
  254. package/dist/jbrowse-plugin-apollo.umd.development.js.map +1 -1
  255. package/dist/jbrowse-plugin-apollo.umd.production.min.js +1 -1
  256. package/dist/jbrowse-plugin-apollo.umd.production.min.js.map +1 -1
  257. package/dist/makeDisplayComponent.d.ts +9 -0
  258. package/dist/makeDisplayComponent.d.ts.map +1 -0
  259. package/dist/menus/index.d.ts +2 -0
  260. package/dist/menus/index.d.ts.map +1 -0
  261. package/dist/menus/topLevelMenu.d.ts +3 -0
  262. package/dist/menus/topLevelMenu.d.ts.map +1 -0
  263. package/dist/menus/topLevelMenuAdmin.d.ts +3 -0
  264. package/dist/menus/topLevelMenuAdmin.d.ts.map +1 -0
  265. package/dist/session/index.d.ts +2 -0
  266. package/dist/session/index.d.ts.map +1 -0
  267. package/dist/types.d.ts +10 -0
  268. package/dist/types.d.ts.map +1 -0
  269. package/dist/util/annotationFeatureUtils.d.ts +7 -0
  270. package/dist/util/annotationFeatureUtils.d.ts.map +1 -0
  271. package/dist/util/copyToClipboard.d.ts +2 -0
  272. package/dist/util/copyToClipboard.d.ts.map +1 -0
  273. package/dist/util/glyphUtils.d.ts +31 -0
  274. package/dist/util/glyphUtils.d.ts.map +1 -0
  275. package/dist/util/index.d.ts +10 -0
  276. package/dist/util/index.d.ts.map +1 -0
  277. package/dist/util/loadAssemblyIntoClient.d.ts +5 -0
  278. package/dist/util/loadAssemblyIntoClient.d.ts.map +1 -0
  279. package/dist/util/mouseEventsUtils.d.ts +25 -0
  280. package/dist/util/mouseEventsUtils.d.ts.map +1 -0
  281. package/package.json +48 -25
  282. package/src/ApolloInternetAccount/components/AuthTypeSelector.tsx +7 -2
  283. package/src/ApolloInternetAccount/components/LoginButtons.tsx +1 -1
  284. package/src/ApolloInternetAccount/configSchema.ts +1 -1
  285. package/src/ApolloInternetAccount/model.ts +13 -6
  286. package/src/ApolloJobModel.ts +3 -3
  287. package/src/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.ts +2 -2
  288. package/src/ApolloSequenceAdapter/ApolloSequenceAdapter.ts +2 -2
  289. package/src/ApolloTextSearchAdapter/ApolloTextSearchAdapter.ts +28 -5
  290. package/src/BackendDrivers/BackendDriver.ts +8 -8
  291. package/src/BackendDrivers/CollaborationServerDriver.ts +6 -6
  292. package/src/BackendDrivers/DesktopFileDriver.ts +4 -4
  293. package/src/BackendDrivers/InMemoryFileDriver.ts +5 -8
  294. package/src/ChangeManager.ts +8 -3
  295. package/src/FeatureDetailsWidget/ApolloFeatureDetailsWidget.tsx +3 -3
  296. package/src/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.tsx +7 -7
  297. package/src/FeatureDetailsWidget/AttributeKey.tsx +1 -1
  298. package/src/FeatureDetailsWidget/AttributeKeySelector.tsx +1 -1
  299. package/src/FeatureDetailsWidget/Attributes.tsx +4 -4
  300. package/src/FeatureDetailsWidget/BasicInformation.tsx +3 -3
  301. package/src/FeatureDetailsWidget/DefaultAttributeEditor.tsx +1 -1
  302. package/src/FeatureDetailsWidget/FeatureDetailsNavigation.tsx +2 -2
  303. package/src/FeatureDetailsWidget/Sequence.tsx +3 -3
  304. package/src/FeatureDetailsWidget/TranscriptSequence.tsx +2 -2
  305. package/src/FeatureDetailsWidget/TranscriptWidgetEditLocation.tsx +3 -6
  306. package/src/FeatureDetailsWidget/TranscriptWidgetSummary.tsx +1 -1
  307. package/src/FeatureDetailsWidget/model.ts +3 -3
  308. package/src/LinearApolloDisplay/components/CheckResultWarnings.tsx +2 -2
  309. package/src/LinearApolloDisplay/components/LinearApolloDisplay.tsx +6 -4
  310. package/src/LinearApolloDisplay/glyphs/BoxGlyph.ts +7 -7
  311. package/src/LinearApolloDisplay/glyphs/GeneGlyph.ts +56 -30
  312. package/src/LinearApolloDisplay/glyphs/GenericChildGlyph.ts +6 -6
  313. package/src/LinearApolloDisplay/glyphs/Glyph.ts +7 -7
  314. package/src/LinearApolloDisplay/glyphs/util.ts +2 -2
  315. package/src/LinearApolloDisplay/stateModel/base.ts +17 -8
  316. package/src/LinearApolloDisplay/stateModel/index.ts +2 -2
  317. package/src/LinearApolloDisplay/stateModel/layouts.ts +4 -4
  318. package/src/LinearApolloDisplay/stateModel/mouseEvents.ts +6 -6
  319. package/src/LinearApolloDisplay/stateModel/rendering.ts +3 -3
  320. package/src/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.tsx +4 -2
  321. package/src/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.ts +4 -4
  322. package/src/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.ts +3 -3
  323. package/src/LinearApolloReferenceSequenceDisplay/stateModel/base.ts +11 -8
  324. package/src/LinearApolloReferenceSequenceDisplay/stateModel/index.ts +2 -2
  325. package/src/LinearApolloReferenceSequenceDisplay/stateModel/rendering.ts +2 -2
  326. package/src/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.tsx +17 -9
  327. package/src/LinearApolloSixFrameDisplay/components/TrackLines.tsx +1 -1
  328. package/src/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.ts +36 -23
  329. package/src/LinearApolloSixFrameDisplay/glyphs/Glyph.ts +6 -6
  330. package/src/LinearApolloSixFrameDisplay/stateModel/base.ts +17 -8
  331. package/src/LinearApolloSixFrameDisplay/stateModel/index.ts +2 -2
  332. package/src/LinearApolloSixFrameDisplay/stateModel/layouts.ts +12 -8
  333. package/src/LinearApolloSixFrameDisplay/stateModel/mouseEvents.ts +11 -10
  334. package/src/LinearApolloSixFrameDisplay/stateModel/rendering.ts +3 -3
  335. package/src/OntologyManager/OntologyStore/fulltext.test.ts +1 -1
  336. package/src/OntologyManager/OntologyStore/fulltext.ts +11 -4
  337. package/src/OntologyManager/OntologyStore/index.test.ts +3 -0
  338. package/src/OntologyManager/OntologyStore/indexeddb-schema.ts +6 -6
  339. package/src/OntologyManager/OntologyStore/indexeddb-storage.ts +2 -1
  340. package/src/OntologyManager/index.ts +4 -4
  341. package/src/OntologyManager/util.ts +1 -1
  342. package/src/TabularEditor/HybridGrid/ChangeHandling.ts +2 -2
  343. package/src/TabularEditor/HybridGrid/Feature.tsx +6 -6
  344. package/src/TabularEditor/HybridGrid/FeatureAttributes.tsx +2 -2
  345. package/src/TabularEditor/HybridGrid/Highlight.tsx +1 -1
  346. package/src/TabularEditor/HybridGrid/HybridGrid.tsx +2 -2
  347. package/src/TabularEditor/HybridGrid/NumberCell.tsx +1 -1
  348. package/src/TabularEditor/HybridGrid/ToolBar.tsx +3 -2
  349. package/src/TabularEditor/HybridGrid/featureContextMenuItems.ts +26 -4
  350. package/src/TabularEditor/TabularEditorPane.tsx +1 -1
  351. package/src/TabularEditor/model.ts +2 -2
  352. package/src/TabularEditor/types.ts +2 -2
  353. package/src/components/AddAssembly.tsx +61 -42
  354. package/src/components/AddAssemblyAliases.tsx +5 -5
  355. package/src/components/AddChildFeature.tsx +3 -3
  356. package/src/components/AddFeature.tsx +4 -4
  357. package/src/components/AddRefSeqAliases.tsx +7 -7
  358. package/src/components/CopyFeature.tsx +8 -8
  359. package/src/components/CreateApolloAnnotation.tsx +5 -5
  360. package/src/components/DeleteAssembly.tsx +8 -8
  361. package/src/components/DeleteFeature.tsx +4 -4
  362. package/src/components/Dialog.tsx +1 -1
  363. package/src/components/DownloadGFF3.tsx +8 -8
  364. package/src/components/DuplicateTranscript.tsx +132 -0
  365. package/src/components/FilterFeatures.tsx +1 -1
  366. package/src/components/FilterTranscripts.tsx +1 -1
  367. package/src/components/ImportFeatures.tsx +51 -33
  368. package/src/components/LogOut.tsx +4 -4
  369. package/src/components/ManageChecks.tsx +8 -8
  370. package/src/components/ManageUsers.tsx +18 -26
  371. package/src/components/MergeExons.tsx +4 -4
  372. package/src/components/MergeTranscripts.tsx +4 -4
  373. package/src/components/OntologyTermAutocomplete.tsx +14 -4
  374. package/src/components/OntologyTermMultiSelect.tsx +12 -5
  375. package/src/components/OpenLocalFile.tsx +2 -2
  376. package/src/components/SplitExon.tsx +6 -6
  377. package/src/components/ViewChangeLog.tsx +8 -8
  378. package/src/components/ViewCheckResults.tsx +4 -4
  379. package/src/components/index.ts +1 -0
  380. package/src/config.ts +1 -1
  381. package/src/extensions/annotationFromJBrowseFeature.ts +29 -24
  382. package/src/extensions/annotationFromPileup.ts +8 -6
  383. package/src/index.ts +25 -1
  384. package/src/makeDisplayComponent.tsx +8 -5
  385. package/src/menus/topLevelMenu.ts +4 -4
  386. package/src/menus/topLevelMenuAdmin.ts +4 -4
  387. package/src/session/ClientDataStore.ts +20 -15
  388. package/src/session/session.ts +30 -19
  389. package/src/types.ts +10 -4
  390. package/src/util/annotationFeatureUtils.ts +1 -1
  391. package/src/util/displayUtils.ts +3 -3
  392. package/src/util/glyphUtils.ts +10 -10
  393. package/src/util/index.ts +4 -4
  394. package/src/util/loadAssemblyIntoClient.ts +4 -4
  395. package/src/util/mouseEventsUtils.ts +2 -2
@@ -0,0 +1 @@
1
+ {"version":3,"file":"GenericChildGlyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/GenericChildGlyph.ts"],"names":[],"mappings":"AAeA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,SAAS,CAAA;AAiMpC,eAAO,MAAM,iBAAiB,EAAE,KAc/B,CAAA"}
@@ -0,0 +1,26 @@
1
+ import type { AnnotationFeature } from '@apollo-annotation/mst';
2
+ import type { MenuItem } from '@jbrowse/core/ui';
3
+ import type { OntologyRecord } from '../../OntologyManager';
4
+ import type { MousePositionWithFeature } from '../../util';
5
+ import type { LinearApolloDisplayMouseEvents } from '../stateModel/mouseEvents';
6
+ import type { LinearApolloDisplayRendering } from '../stateModel/rendering';
7
+ import type { CanvasMouseEvent } from '../types';
8
+ export interface Glyph {
9
+ /** @returns number of layout rows used by this glyph with this feature and zoom level */
10
+ getRowCount(feature: AnnotationFeature, featureTypeOntology: OntologyRecord, bpPerPx: number): number;
11
+ /** draw the feature's primary rendering on the canvas */
12
+ draw(ctx: CanvasRenderingContext2D, feature: AnnotationFeature, row: number, stateModel: LinearApolloDisplayRendering, displayedRegionIndex: number): void;
13
+ /** @returns the feature or subfeature at the given bp and row number in this glyph's layout */
14
+ getFeatureFromLayout(feature: AnnotationFeature, bp: number, row: number, featureTypeOntology: OntologyRecord): AnnotationFeature | undefined;
15
+ getRowForFeature(feature: AnnotationFeature, childFeature: AnnotationFeature, featureTypeOntology: OntologyRecord): number | undefined;
16
+ drawHover(display: LinearApolloDisplayMouseEvents, overlayCtx: CanvasRenderingContext2D): void;
17
+ drawDragPreview(display: LinearApolloDisplayMouseEvents, ctx: CanvasRenderingContext2D): void;
18
+ onMouseDown(display: LinearApolloDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;
19
+ onMouseMove(display: LinearApolloDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;
20
+ onMouseLeave(display: LinearApolloDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;
21
+ onMouseUp(display: LinearApolloDisplayMouseEvents, currentMousePosition: MousePositionWithFeature, event: CanvasMouseEvent): void;
22
+ drawTooltip(display: LinearApolloDisplayMouseEvents, context: CanvasRenderingContext2D): void;
23
+ getContextMenuItemsForFeature(display: LinearApolloDisplayMouseEvents, sourceFeature: AnnotationFeature): MenuItem[];
24
+ getContextMenuItems(display: LinearApolloDisplayMouseEvents, currentMousePosition: MousePositionWithFeature): MenuItem[];
25
+ }
26
+ //# sourceMappingURL=Glyph.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"Glyph.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/Glyph.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC/D,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAA;AAEhD,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,uBAAuB,CAAA;AAC3D,OAAO,KAAK,EAAE,wBAAwB,EAAE,MAAM,YAAY,CAAA;AAC1D,OAAO,KAAK,EAAE,8BAA8B,EAAE,MAAM,2BAA2B,CAAA;AAC/E,OAAO,KAAK,EAAE,4BAA4B,EAAE,MAAM,yBAAyB,CAAA;AAC3E,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,UAAU,CAAA;AAEhD,MAAM,WAAW,KAAK;IACpB,yFAAyF;IACzF,WAAW,CACT,OAAO,EAAE,iBAAiB,EAC1B,mBAAmB,EAAE,cAAc,EACnC,OAAO,EAAE,MAAM,GACd,MAAM,CAAA;IACT,yDAAyD;IACzD,IAAI,CACF,GAAG,EAAE,wBAAwB,EAC7B,OAAO,EAAE,iBAAiB,EAC1B,GAAG,EAAE,MAAM,EACX,UAAU,EAAE,4BAA4B,EACxC,oBAAoB,EAAE,MAAM,GAC3B,IAAI,CAAA;IACP,+FAA+F;IAC/F,oBAAoB,CAClB,OAAO,EAAE,iBAAiB,EAC1B,EAAE,EAAE,MAAM,EACV,GAAG,EAAE,MAAM,EACX,mBAAmB,EAAE,cAAc,GAClC,iBAAiB,GAAG,SAAS,CAAA;IAChC,gBAAgB,CACd,OAAO,EAAE,iBAAiB,EAC1B,YAAY,EAAE,iBAAiB,EAC/B,mBAAmB,EAAE,cAAc,GAClC,MAAM,GAAG,SAAS,CAAA;IAErB,SAAS,CACP,OAAO,EAAE,8BAA8B,EACvC,UAAU,EAAE,wBAAwB,GACnC,IAAI,CAAA;IAEP,eAAe,CACb,OAAO,EAAE,8BAA8B,EACvC,GAAG,EAAE,wBAAwB,GAC5B,IAAI,CAAA;IAEP,WAAW,CACT,OAAO,EAAE,8BAA8B,EACvC,oBAAoB,EAAE,wBAAwB,EAC9C,KAAK,EAAE,gBAAgB,GACtB,IAAI,CAAA;IAEP,WAAW,CACT,OAAO,EAAE,8BAA8B,EACvC,oBAAoB,EAAE,wBAAwB,EAC9C,KAAK,EAAE,gBAAgB,GACtB,IAAI,CAAA;IAEP,YAAY,CACV,OAAO,EAAE,8BAA8B,EACvC,oBAAoB,EAAE,wBAAwB,EAC9C,KAAK,EAAE,gBAAgB,GACtB,IAAI,CAAA;IAEP,SAAS,CACP,OAAO,EAAE,8BAA8B,EACvC,oBAAoB,EAAE,wBAAwB,EAC9C,KAAK,EAAE,gBAAgB,GACtB,IAAI,CAAA;IAEP,WAAW,CACT,OAAO,EAAE,8BAA8B,EACvC,OAAO,EAAE,wBAAwB,GAChC,IAAI,CAAA;IAEP,6BAA6B,CAC3B,OAAO,EAAE,8BAA8B,EACvC,aAAa,EAAE,iBAAiB,GAC/B,QAAQ,EAAE,CAAA;IAEb,mBAAmB,CACjB,OAAO,EAAE,8BAA8B,EACvC,oBAAoB,EAAE,wBAAwB,GAC7C,QAAQ,EAAE,CAAA;CACd"}
@@ -0,0 +1,4 @@
1
+ export * from './BoxGlyph';
2
+ export * from './GeneGlyph';
3
+ export * from './GenericChildGlyph';
4
+ //# sourceMappingURL=index.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/index.ts"],"names":[],"mappings":"AAAA,cAAc,YAAY,CAAA;AAC1B,cAAc,aAAa,CAAA;AAC3B,cAAc,qBAAqB,CAAA"}
@@ -0,0 +1,12 @@
1
+ import type { ContentBlock } from '@jbrowse/core/util/blockTypes';
2
+ import type { LinearApolloDisplay } from '../stateModel';
3
+ export declare function getLeftPx(display: LinearApolloDisplay, feature: {
4
+ max: number;
5
+ min: number;
6
+ }, block: ContentBlock): number;
7
+ /**
8
+ * Perform a canvas strokeRect, but have the stroke be contained within the
9
+ * given rect instead of centered on it.
10
+ */
11
+ export declare function strokeRectInner(ctx: CanvasRenderingContext2D, left: number, top: number, width: number, height: number, color: string): void;
12
+ //# sourceMappingURL=util.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"util.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/glyphs/util.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,+BAA+B,CAAA;AAEjE,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,eAAe,CAAA;AAExD,wBAAgB,SAAS,CACvB,OAAO,EAAE,mBAAmB,EAC5B,OAAO,EAAE;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAA;CAAE,EACrC,KAAK,EAAE,YAAY,UAWpB;AAED;;;GAGG;AACH,wBAAgB,eAAe,CAC7B,GAAG,EAAE,wBAAwB,EAC7B,IAAI,EAAE,MAAM,EACZ,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,MAAM,EACb,MAAM,EAAE,MAAM,EACd,KAAK,EAAE,MAAM,QAKd"}
@@ -0,0 +1,3 @@
1
+ export { configSchema } from './configSchema';
2
+ export { stateModelFactory } from './stateModel';
3
+ //# sourceMappingURL=index.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/LinearApolloDisplay/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,MAAM,gBAAgB,CAAA;AAC7C,OAAO,EAAE,iBAAiB,EAAE,MAAM,cAAc,CAAA"}
@@ -0,0 +1,254 @@
1
+ import type { AnnotationFeature } from '@apollo-annotation/mst';
2
+ import type PluginManager from '@jbrowse/core/PluginManager';
3
+ import { type AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
4
+ import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
5
+ import type { ApolloInternetAccountModel } from '../../ApolloInternetAccount/model';
6
+ import type { ApolloSessionModel, HoveredFeature } from '../../session';
7
+ export declare function baseModelFactory(_pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("@jbrowse/mobx-state-tree").IModelType<{
8
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
9
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
10
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
11
+ } & {
12
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearApolloDisplay">;
13
+ configuration: AnyConfigurationSchemaType;
14
+ graphical: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
15
+ table: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
16
+ showCheckResults: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
17
+ zoomThreshold: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
18
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
19
+ filteredFeatureTypes: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
20
+ loadingState: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
21
+ }, {
22
+ rendererTypeName: string;
23
+ error: unknown;
24
+ statusMessage: string | undefined;
25
+ } & {
26
+ readonly RenderingComponent: import("react").FC<{
27
+ model: {
28
+ id: string;
29
+ type: string;
30
+ rpcDriverName: string | undefined;
31
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
32
+ rendererTypeName: string;
33
+ error: unknown;
34
+ statusMessage: string | undefined;
35
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
36
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
37
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
38
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
39
+ }, {
40
+ rendererTypeName: string;
41
+ error: unknown;
42
+ statusMessage: string | undefined;
43
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
44
+ onHorizontalScroll?: () => void;
45
+ blockState?: Record<string, any>;
46
+ }>;
47
+ readonly DisplayBlurb: import("react").FC<{
48
+ model: {
49
+ id: string;
50
+ type: string;
51
+ rpcDriverName: string | undefined;
52
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
53
+ rendererTypeName: string;
54
+ error: unknown;
55
+ statusMessage: string | undefined;
56
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
57
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
58
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
59
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
60
+ }, {
61
+ rendererTypeName: string;
62
+ error: unknown;
63
+ statusMessage: string | undefined;
64
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
65
+ }> | null;
66
+ readonly adapterConfig: any;
67
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
68
+ readonly isMinimized: boolean;
69
+ readonly parentDisplay: any;
70
+ readonly effectiveRpcDriverName: any;
71
+ } & {
72
+ renderProps(): any;
73
+ renderingProps(): {
74
+ displayModel: {
75
+ id: string;
76
+ type: string;
77
+ rpcDriverName: string | undefined;
78
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
79
+ rendererTypeName: string;
80
+ error: unknown;
81
+ statusMessage: string | undefined;
82
+ } & {
83
+ readonly RenderingComponent: import("react").FC<{
84
+ model: {
85
+ id: string;
86
+ type: string;
87
+ rpcDriverName: string | undefined;
88
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
89
+ rendererTypeName: string;
90
+ error: unknown;
91
+ statusMessage: string | undefined;
92
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
93
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
94
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
95
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
96
+ }, {
97
+ rendererTypeName: string;
98
+ error: unknown;
99
+ statusMessage: string | undefined;
100
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
101
+ onHorizontalScroll?: () => void;
102
+ blockState?: Record<string, any>;
103
+ }>;
104
+ readonly DisplayBlurb: import("react").FC<{
105
+ model: {
106
+ id: string;
107
+ type: string;
108
+ rpcDriverName: string | undefined;
109
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
110
+ rendererTypeName: string;
111
+ error: unknown;
112
+ statusMessage: string | undefined;
113
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
114
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
115
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
116
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
117
+ }, {
118
+ rendererTypeName: string;
119
+ error: unknown;
120
+ statusMessage: string | undefined;
121
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
122
+ }> | null;
123
+ readonly adapterConfig: any;
124
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
125
+ readonly isMinimized: boolean;
126
+ readonly parentDisplay: any;
127
+ readonly effectiveRpcDriverName: any;
128
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
129
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
130
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
131
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
132
+ }, {
133
+ rendererTypeName: string;
134
+ error: unknown;
135
+ statusMessage: string | undefined;
136
+ } & {
137
+ readonly RenderingComponent: import("react").FC<{
138
+ model: {
139
+ id: string;
140
+ type: string;
141
+ rpcDriverName: string | undefined;
142
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
143
+ rendererTypeName: string;
144
+ error: unknown;
145
+ statusMessage: string | undefined;
146
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
147
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
148
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
149
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
150
+ }, {
151
+ rendererTypeName: string;
152
+ error: unknown;
153
+ statusMessage: string | undefined;
154
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
155
+ onHorizontalScroll?: () => void;
156
+ blockState?: Record<string, any>;
157
+ }>;
158
+ readonly DisplayBlurb: import("react").FC<{
159
+ model: {
160
+ id: string;
161
+ type: string;
162
+ rpcDriverName: string | undefined;
163
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
164
+ rendererTypeName: string;
165
+ error: unknown;
166
+ statusMessage: string | undefined;
167
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
168
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
169
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
170
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
171
+ }, {
172
+ rendererTypeName: string;
173
+ error: unknown;
174
+ statusMessage: string | undefined;
175
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
176
+ }> | null;
177
+ readonly adapterConfig: any;
178
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
179
+ readonly isMinimized: boolean;
180
+ readonly parentDisplay: any;
181
+ readonly effectiveRpcDriverName: any;
182
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
183
+ };
184
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
185
+ readonly DisplayMessageComponent: undefined | import("react").FC<any>;
186
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
187
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
188
+ regionCannotBeRendered(): null;
189
+ } & {
190
+ setStatusMessage(arg?: string): void;
191
+ setError(error?: unknown): void;
192
+ setRpcDriverName(rpcDriverName: string): void;
193
+ reload(): void;
194
+ } & {
195
+ renderProps(): any;
196
+ } & {
197
+ scrollTop: number;
198
+ } & {
199
+ readonly lgv: LinearGenomeViewModel;
200
+ readonly height: number;
201
+ readonly loading: boolean;
202
+ readonly zoomThresholdSetting: number;
203
+ } & {
204
+ readonly rendererTypeName: any;
205
+ readonly session: ApolloSessionModel;
206
+ readonly regions: {
207
+ assemblyName: string;
208
+ refName: string;
209
+ start: number;
210
+ end: number;
211
+ }[];
212
+ regionCannotBeRendered(): "Zoom in to see annotations" | undefined;
213
+ } & {
214
+ readonly apolloInternetAccount: ApolloInternetAccountModel | undefined;
215
+ readonly changeManager: import("../../ChangeManager").ChangeManager;
216
+ getAssemblyId(assemblyName: string): string;
217
+ readonly selectedFeature: AnnotationFeature | undefined;
218
+ readonly hoveredFeature: HoveredFeature | undefined;
219
+ } & {
220
+ setScrollTop(scrollTop: number): void;
221
+ setHeight(displayHeight: number): number;
222
+ resizeHeight(distance: number): number;
223
+ showGraphicalOnly(): void;
224
+ showTableOnly(): void;
225
+ showGraphicalAndTable(): void;
226
+ toggleShowCheckResults(): void;
227
+ updateFilteredFeatureTypes(types: string[]): void;
228
+ setLoading(loading: boolean): void;
229
+ setZoomThresholdSetting({ zoomThreshold }: {
230
+ zoomThreshold: number;
231
+ }): void;
232
+ } & {
233
+ trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
234
+ type: string;
235
+ label: string;
236
+ subMenu: ({
237
+ label: string;
238
+ type: string;
239
+ checked: boolean;
240
+ onClick: () => void;
241
+ } | {
242
+ label: string;
243
+ onClick: () => void;
244
+ type?: undefined;
245
+ checked?: undefined;
246
+ })[];
247
+ })[];
248
+ } & {
249
+ setSelectedFeature(feature?: AnnotationFeature): void;
250
+ setHoveredFeature(hoveredFeature?: HoveredFeature): void;
251
+ showFeatureDetailsWidget(feature: AnnotationFeature, customWidgetNameAndId?: [string, string]): void;
252
+ afterAttach(): void;
253
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
254
+ //# sourceMappingURL=base.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"base.d.ts","sourceRoot":"","sources":["../../../src/LinearApolloDisplay/stateModel/base.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC/D,OAAO,KAAK,aAAa,MAAM,6BAA6B,CAAA;AAC5D,OAAO,EACL,KAAK,0BAA0B,EAGhC,MAAM,6BAA6B,CAAA;AAiBpC,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,oCAAoC,CAAA;AAG/E,OAAO,KAAK,EAAE,0BAA0B,EAAE,MAAM,mCAAmC,CAAA;AAEnF,OAAO,KAAK,EAAE,kBAAkB,EAAE,cAAc,EAAE,MAAM,eAAe,CAAA;AAMvE,wBAAgB,gBAAgB,CAC9B,cAAc,EAAE,aAAa,EAC7B,YAAY,EAAE,0BAA0B;eArCzC,0BAA0B,wBAAwB,0BACvC;iBACV,0BAA0B;0BAErB,0BAA0B,gBACnB,0BAEX;;;;;;;;;;;;;;;;;;;;;mBASK,wCAAwC;;;;mBAQ5B,0BAA0B,wBAAwB,0BACtD;uBAEM,0BAA0B,wBAAwB,0BAC1D;yBACF,0BAAyB;kCACf,0BAA0B,gBACnC,0BAA0B;;;;;kBAOvC,0BACsB,yBAAyB,0BAEzC;0BACA,CAAH;kBAAgC,CAAC;;;;;;;mBAOlB,wCAEX;;;;mBAMI,0BACG,wBAAwB,0BAA0B;uBAE7C,0BAEjB,wBAAwB,0BACT;yBACmB,0BAE9B;kCAIQ,0BAEF,gBACN,0BACM;;;;;kBAKJ,0BACS,yBAAyB,0BAEvC;;;iCAMG,oBACF;;;;;;;;;;;mBAW+B,wCAEnC;;;;;;;;;;2BAYS,wCAAwC;;;;2BAQ7B,0BACZ,wBAAyB,0BAAyB;+BACtB,0BACd,wBACZ,0BAA0B;iCACY,0BACjC;0CACwC,0BAC/C,gBACM,0BAA0B;;;;;0BAKY,0BAA0B,yBACvD,0BAA0B;kCAGlC,CAAA;0BAAwC,CAAC;;;;;;;2BAOhD,wCACW;;;;2BAKC,0BAA0B,wBACpC,0BACV;+BACqC,0BAC/B,wBAAwB,0BAA0B;iCAI1C,0BACA;0CAER,0BACe,gBAAgB,0BACf;;;;;0BAKsB,0BACvC,yBAAyB,0BAEpB;;;yCAKO,oBACV;;;;mBAOU,0BAA0B,wBAErC,0BAAuB;uBACd,0BAA0B,wBAEjC,0BAA0B;yBAGpB,0BAA0B;kCACrB,0BACjB,gBAEE,0BACA;;;;;;;;;;;2BAWwB,wCACX;;;;2BAMD,0BACP,wBAAwB,0BACrB;+BACa,0BACtB,wBAAwB,0BACT;iCAGF,0BACD;0CACG,0BACX,gBAAgB,0BACrB;;;;;0BAMwB,0BACV,yBAAyB,0BACnB;kCACmB,CAAC;0BAE1B,CAAJ;;;;;;;2BAMqB,wCACZ;;;;2BAQH,0BAA0B,wBAAwB,0BACpD;+BAA8C,0BACtD,wBAAyB,0BACb;iCAGE,0BAAK;0CAEL,0BACX,gBAAgB,0BAA0B;;;;;0BAMrC,0BACL,yBAED,0BAEH;;;yCAKiB,oBAAqB;;;;kBAKL,0BAC9B,yBAAyB,0BAEjC;;kCAC6B,qCACvB;;;;;;;;;;;;;;;kBAzN6C,qBAAqB;;;;;;sBA0B5B,kBAAkB;;;;;;;;;oCAqCnD,0BAA0B,GAAG,SAAS;;gCAMjB,MAAM;;;;4BAmBV,MAAM;6BAGL,MAAM;2BAIR,MAAM;;;;;sCAoBK,MAAM,EAAE;wBAGtB,OAAO;+CAGgB;QAAE,aAAa,EAAE,MAAM,CAAA;KAAE;;;;;;;;;;;;;;;;;;iCAoFvC,iBAAiB;uCAKX,cAAc;sCAMtC,iBAAiB,0BACF,CAAC,MAAM,EAAE,MAAM,CAAC;;yGAkD/C"}