@apollo-annotation/jbrowse-plugin-apollo 0.3.11 → 0.3.12
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts +6 -0
- package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts.map +1 -0
- package/dist/ApolloInternetAccount/components/LoginButtons.d.ts +5 -0
- package/dist/ApolloInternetAccount/components/LoginButtons.d.ts.map +1 -0
- package/dist/ApolloInternetAccount/components/LoginIcons.d.ts +4 -0
- package/dist/ApolloInternetAccount/components/LoginIcons.d.ts.map +1 -0
- package/dist/ApolloInternetAccount/index.d.ts +3 -0
- package/dist/ApolloInternetAccount/index.d.ts.map +1 -0
- package/dist/ApolloJobModel.d.ts +53 -0
- package/dist/ApolloJobModel.d.ts.map +1 -0
- package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts +12 -0
- package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts.map +1 -0
- package/dist/ApolloRefNameAliasAdapter/index.d.ts +3 -0
- package/dist/ApolloRefNameAliasAdapter/index.d.ts.map +1 -0
- package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts +27 -0
- package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts.map +1 -0
- package/dist/ApolloSequenceAdapter/index.d.ts +3 -0
- package/dist/ApolloSequenceAdapter/index.d.ts.map +1 -0
- package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts +13 -0
- package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts.map +1 -0
- package/dist/ApolloTextSearchAdapter/index.d.ts +3 -0
- package/dist/ApolloTextSearchAdapter/index.d.ts.map +1 -0
- package/dist/BackendDrivers/BackendDriver.d.ts +26 -0
- package/dist/BackendDrivers/BackendDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/CollaborationServerDriver.d.ts +206 -0
- package/dist/BackendDrivers/CollaborationServerDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/DesktopFileDriver.d.ts +160 -0
- package/dist/BackendDrivers/DesktopFileDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/InMemoryFileDriver.d.ts +162 -0
- package/dist/BackendDrivers/InMemoryFileDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/index.d.ts +5 -0
- package/dist/BackendDrivers/index.d.ts.map +1 -0
- package/dist/ChangeManager.d.ts +24 -0
- package/dist/ChangeManager.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts +6 -0
- package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts +12 -0
- package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/AttributeKey.d.ts +4 -0
- package/dist/FeatureDetailsWidget/AttributeKey.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts +6 -0
- package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/Attributes.d.ts +9 -0
- package/dist/FeatureDetailsWidget/Attributes.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/BasicInformation.d.ts +8 -0
- package/dist/FeatureDetailsWidget/BasicInformation.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts +9 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts +5 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts +7 -0
- package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/NumberTextField.d.ts +8 -0
- package/dist/FeatureDetailsWidget/NumberTextField.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/Sequence.d.ts +10 -0
- package/dist/FeatureDetailsWidget/Sequence.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/StringTextField.d.ts +8 -0
- package/dist/FeatureDetailsWidget/StringTextField.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts +10 -0
- package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts +9 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts +6 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/index.d.ts +5 -0
- package/dist/FeatureDetailsWidget/index.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/model.d.ts +123 -0
- package/dist/FeatureDetailsWidget/model.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts +5 -0
- package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts +7 -0
- package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/components/index.d.ts +2 -0
- package/dist/LinearApolloDisplay/components/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts +4 -0
- package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts +3 -0
- package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts +3 -0
- package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts +26 -0
- package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/index.d.ts +4 -0
- package/dist/LinearApolloDisplay/glyphs/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/util.d.ts +12 -0
- package/dist/LinearApolloDisplay/glyphs/util.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/index.d.ts +3 -0
- package/dist/LinearApolloDisplay/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/base.d.ts +254 -0
- package/dist/LinearApolloDisplay/stateModel/base.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/index.d.ts +349 -0
- package/dist/LinearApolloDisplay/stateModel/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/layouts.d.ts +273 -0
- package/dist/LinearApolloDisplay/stateModel/layouts.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts +656 -0
- package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/rendering.d.ts +300 -0
- package/dist/LinearApolloDisplay/stateModel/rendering.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/types.d.ts +2 -0
- package/dist/LinearApolloDisplay/types.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts +7 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts +2 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts +6 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts +5 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts +4 -0
- package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts +236 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts +245 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts +246 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts +7 -0
- package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts +8 -0
- package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/components/index.d.ts +3 -0
- package/dist/LinearApolloSixFrameDisplay/components/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts +3 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts +20 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts +2 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/index.d.ts +3 -0
- package/dist/LinearApolloSixFrameDisplay/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts +257 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts +355 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts +283 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts +668 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts +306 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/types.d.ts +2 -0
- package/dist/LinearApolloSixFrameDisplay/types.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts +8 -0
- package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/fulltext.d.ts +27 -0
- package/dist/OntologyManager/OntologyStore/fulltext.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/index.d.ts +93 -0
- package/dist/OntologyManager/OntologyStore/index.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts +71 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts +11 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts +107 -0
- package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/prefixes.d.ts +20 -0
- package/dist/OntologyManager/OntologyStore/prefixes.d.ts.map +1 -0
- package/dist/OntologyManager/util.d.ts +4 -0
- package/dist/OntologyManager/util.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts +6 -0
- package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/Feature.d.ts +13 -0
- package/dist/TabularEditor/HybridGrid/Feature.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts +6 -0
- package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/Highlight.d.ts +6 -0
- package/dist/TabularEditor/HybridGrid/Highlight.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts +14 -0
- package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/NumberCell.d.ts +8 -0
- package/dist/TabularEditor/HybridGrid/NumberCell.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/ToolBar.d.ts +5 -0
- package/dist/TabularEditor/HybridGrid/ToolBar.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts +11 -0
- package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/index.d.ts +2 -0
- package/dist/TabularEditor/HybridGrid/index.d.ts.map +1 -0
- package/dist/TabularEditor/TabularEditorPane.d.ts +5 -0
- package/dist/TabularEditor/TabularEditorPane.d.ts.map +1 -0
- package/dist/TabularEditor/index.d.ts +3 -0
- package/dist/TabularEditor/index.d.ts.map +1 -0
- package/dist/TabularEditor/model.d.ts +17 -0
- package/dist/TabularEditor/model.d.ts.map +1 -0
- package/dist/TabularEditor/types.d.ts +4 -0
- package/dist/TabularEditor/types.d.ts.map +1 -0
- package/dist/components/AddAssembly.d.ts +10 -0
- package/dist/components/AddAssembly.d.ts.map +1 -0
- package/dist/components/AddAssemblyAliases.d.ts +10 -0
- package/dist/components/AddAssemblyAliases.d.ts.map +1 -0
- package/dist/components/AddChildFeature.d.ts +13 -0
- package/dist/components/AddChildFeature.d.ts.map +1 -0
- package/dist/components/AddFeature.d.ts +12 -0
- package/dist/components/AddFeature.d.ts.map +1 -0
- package/dist/components/AddRefSeqAliases.d.ts +10 -0
- package/dist/components/AddRefSeqAliases.d.ts.map +1 -0
- package/dist/components/CopyFeature.d.ts +13 -0
- package/dist/components/CopyFeature.d.ts.map +1 -0
- package/dist/components/CreateApolloAnnotation.d.ts +20 -0
- package/dist/components/CreateApolloAnnotation.d.ts.map +1 -0
- package/dist/components/DeleteAssembly.d.ts +10 -0
- package/dist/components/DeleteAssembly.d.ts.map +1 -0
- package/dist/components/DeleteFeature.d.ts +15 -0
- package/dist/components/DeleteFeature.d.ts.map +1 -0
- package/dist/components/Dialog.d.ts +7 -0
- package/dist/components/Dialog.d.ts.map +1 -0
- package/dist/components/DownloadGFF3.d.ts +8 -0
- package/dist/components/DownloadGFF3.d.ts.map +1 -0
- package/dist/components/DuplicateTranscript.d.ts +15 -0
- package/dist/components/DuplicateTranscript.d.ts.map +1 -0
- package/dist/components/EditZoomThresholdDialog.d.ts +11 -0
- package/dist/components/EditZoomThresholdDialog.d.ts.map +1 -0
- package/dist/components/FilterFeatures.d.ts +10 -0
- package/dist/components/FilterFeatures.d.ts.map +1 -0
- package/dist/components/FilterTranscripts.d.ts +10 -0
- package/dist/components/FilterTranscripts.d.ts.map +1 -0
- package/dist/components/ImportFeatures.d.ts +10 -0
- package/dist/components/ImportFeatures.d.ts.map +1 -0
- package/dist/components/LogOut.d.ts +8 -0
- package/dist/components/LogOut.d.ts.map +1 -0
- package/dist/components/ManageChecks.d.ts +8 -0
- package/dist/components/ManageChecks.d.ts.map +1 -0
- package/dist/components/ManageUsers.d.ts +10 -0
- package/dist/components/ManageUsers.d.ts.map +1 -0
- package/dist/components/MergeExons.d.ts +15 -0
- package/dist/components/MergeExons.d.ts.map +1 -0
- package/dist/components/MergeTranscripts.d.ts +15 -0
- package/dist/components/MergeTranscripts.d.ts.map +1 -0
- package/dist/components/OntologyTermAutocomplete.d.ts +25 -0
- package/dist/components/OntologyTermAutocomplete.d.ts.map +1 -0
- package/dist/components/OntologyTermMultiSelect.d.ts +12 -0
- package/dist/components/OntologyTermMultiSelect.d.ts.map +1 -0
- package/dist/components/OpenLocalFile.d.ts +15 -0
- package/dist/components/OpenLocalFile.d.ts.map +1 -0
- package/dist/components/SplitExon.d.ts +15 -0
- package/dist/components/SplitExon.d.ts.map +1 -0
- package/dist/components/ViewChangeLog.d.ts +8 -0
- package/dist/components/ViewChangeLog.d.ts.map +1 -0
- package/dist/components/ViewCheckResults.d.ts +8 -0
- package/dist/components/ViewCheckResults.d.ts.map +1 -0
- package/dist/components/index.d.ts +21 -0
- package/dist/components/index.d.ts.map +1 -0
- package/dist/extensions/annotationFromJBrowseFeature.d.ts +6 -0
- package/dist/extensions/annotationFromJBrowseFeature.d.ts.map +1 -0
- package/dist/extensions/annotationFromPileup.d.ts +3 -0
- package/dist/extensions/annotationFromPileup.d.ts.map +1 -0
- package/dist/extensions/index.d.ts +3 -0
- package/dist/extensions/index.d.ts.map +1 -0
- package/dist/index.esm.js +843 -1330
- package/dist/index.esm.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.cjs.development.js +919 -1455
- package/dist/jbrowse-plugin-apollo.cjs.development.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.cjs.production.min.js +1 -1
- package/dist/jbrowse-plugin-apollo.cjs.production.min.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.umd.development.js +46351 -63687
- package/dist/jbrowse-plugin-apollo.umd.development.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.umd.production.min.js +1 -1
- package/dist/jbrowse-plugin-apollo.umd.production.min.js.map +1 -1
- package/dist/makeDisplayComponent.d.ts +9 -0
- package/dist/makeDisplayComponent.d.ts.map +1 -0
- package/dist/menus/index.d.ts +2 -0
- package/dist/menus/index.d.ts.map +1 -0
- package/dist/menus/topLevelMenu.d.ts +3 -0
- package/dist/menus/topLevelMenu.d.ts.map +1 -0
- package/dist/menus/topLevelMenuAdmin.d.ts +3 -0
- package/dist/menus/topLevelMenuAdmin.d.ts.map +1 -0
- package/dist/session/index.d.ts +2 -0
- package/dist/session/index.d.ts.map +1 -0
- package/dist/types.d.ts +10 -0
- package/dist/types.d.ts.map +1 -0
- package/dist/util/annotationFeatureUtils.d.ts +7 -0
- package/dist/util/annotationFeatureUtils.d.ts.map +1 -0
- package/dist/util/copyToClipboard.d.ts +2 -0
- package/dist/util/copyToClipboard.d.ts.map +1 -0
- package/dist/util/glyphUtils.d.ts +31 -0
- package/dist/util/glyphUtils.d.ts.map +1 -0
- package/dist/util/index.d.ts +10 -0
- package/dist/util/index.d.ts.map +1 -0
- package/dist/util/loadAssemblyIntoClient.d.ts +5 -0
- package/dist/util/loadAssemblyIntoClient.d.ts.map +1 -0
- package/dist/util/mouseEventsUtils.d.ts +25 -0
- package/dist/util/mouseEventsUtils.d.ts.map +1 -0
- package/package.json +48 -25
- package/src/ApolloInternetAccount/components/AuthTypeSelector.tsx +7 -2
- package/src/ApolloInternetAccount/components/LoginButtons.tsx +1 -1
- package/src/ApolloInternetAccount/configSchema.ts +1 -1
- package/src/ApolloInternetAccount/model.ts +13 -6
- package/src/ApolloJobModel.ts +3 -3
- package/src/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.ts +2 -2
- package/src/ApolloSequenceAdapter/ApolloSequenceAdapter.ts +2 -2
- package/src/ApolloTextSearchAdapter/ApolloTextSearchAdapter.ts +28 -5
- package/src/BackendDrivers/BackendDriver.ts +8 -8
- package/src/BackendDrivers/CollaborationServerDriver.ts +6 -6
- package/src/BackendDrivers/DesktopFileDriver.ts +4 -4
- package/src/BackendDrivers/InMemoryFileDriver.ts +5 -8
- package/src/ChangeManager.ts +8 -3
- package/src/FeatureDetailsWidget/ApolloFeatureDetailsWidget.tsx +3 -3
- package/src/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.tsx +7 -7
- package/src/FeatureDetailsWidget/AttributeKey.tsx +1 -1
- package/src/FeatureDetailsWidget/AttributeKeySelector.tsx +1 -1
- package/src/FeatureDetailsWidget/Attributes.tsx +4 -4
- package/src/FeatureDetailsWidget/BasicInformation.tsx +3 -3
- package/src/FeatureDetailsWidget/DefaultAttributeEditor.tsx +1 -1
- package/src/FeatureDetailsWidget/FeatureDetailsNavigation.tsx +2 -2
- package/src/FeatureDetailsWidget/Sequence.tsx +3 -3
- package/src/FeatureDetailsWidget/TranscriptSequence.tsx +2 -2
- package/src/FeatureDetailsWidget/TranscriptWidgetEditLocation.tsx +3 -6
- package/src/FeatureDetailsWidget/TranscriptWidgetSummary.tsx +1 -1
- package/src/FeatureDetailsWidget/model.ts +3 -3
- package/src/LinearApolloDisplay/components/CheckResultWarnings.tsx +2 -2
- package/src/LinearApolloDisplay/components/LinearApolloDisplay.tsx +6 -4
- package/src/LinearApolloDisplay/glyphs/BoxGlyph.ts +7 -7
- package/src/LinearApolloDisplay/glyphs/GeneGlyph.ts +56 -30
- package/src/LinearApolloDisplay/glyphs/GenericChildGlyph.ts +6 -6
- package/src/LinearApolloDisplay/glyphs/Glyph.ts +7 -7
- package/src/LinearApolloDisplay/glyphs/util.ts +2 -2
- package/src/LinearApolloDisplay/stateModel/base.ts +17 -8
- package/src/LinearApolloDisplay/stateModel/index.ts +2 -2
- package/src/LinearApolloDisplay/stateModel/layouts.ts +4 -4
- package/src/LinearApolloDisplay/stateModel/mouseEvents.ts +6 -6
- package/src/LinearApolloDisplay/stateModel/rendering.ts +3 -3
- package/src/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.tsx +4 -2
- package/src/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.ts +4 -4
- package/src/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.ts +3 -3
- package/src/LinearApolloReferenceSequenceDisplay/stateModel/base.ts +11 -8
- package/src/LinearApolloReferenceSequenceDisplay/stateModel/index.ts +2 -2
- package/src/LinearApolloReferenceSequenceDisplay/stateModel/rendering.ts +2 -2
- package/src/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.tsx +17 -9
- package/src/LinearApolloSixFrameDisplay/components/TrackLines.tsx +1 -1
- package/src/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.ts +36 -23
- package/src/LinearApolloSixFrameDisplay/glyphs/Glyph.ts +6 -6
- package/src/LinearApolloSixFrameDisplay/stateModel/base.ts +17 -8
- package/src/LinearApolloSixFrameDisplay/stateModel/index.ts +2 -2
- package/src/LinearApolloSixFrameDisplay/stateModel/layouts.ts +12 -8
- package/src/LinearApolloSixFrameDisplay/stateModel/mouseEvents.ts +11 -10
- package/src/LinearApolloSixFrameDisplay/stateModel/rendering.ts +3 -3
- package/src/OntologyManager/OntologyStore/fulltext.test.ts +1 -1
- package/src/OntologyManager/OntologyStore/fulltext.ts +11 -4
- package/src/OntologyManager/OntologyStore/index.test.ts +3 -0
- package/src/OntologyManager/OntologyStore/indexeddb-schema.ts +6 -6
- package/src/OntologyManager/OntologyStore/indexeddb-storage.ts +2 -1
- package/src/OntologyManager/index.ts +4 -4
- package/src/OntologyManager/util.ts +1 -1
- package/src/TabularEditor/HybridGrid/ChangeHandling.ts +2 -2
- package/src/TabularEditor/HybridGrid/Feature.tsx +6 -6
- package/src/TabularEditor/HybridGrid/FeatureAttributes.tsx +2 -2
- package/src/TabularEditor/HybridGrid/Highlight.tsx +1 -1
- package/src/TabularEditor/HybridGrid/HybridGrid.tsx +2 -2
- package/src/TabularEditor/HybridGrid/NumberCell.tsx +1 -1
- package/src/TabularEditor/HybridGrid/ToolBar.tsx +3 -2
- package/src/TabularEditor/HybridGrid/featureContextMenuItems.ts +26 -4
- package/src/TabularEditor/TabularEditorPane.tsx +1 -1
- package/src/TabularEditor/model.ts +2 -2
- package/src/TabularEditor/types.ts +2 -2
- package/src/components/AddAssembly.tsx +61 -42
- package/src/components/AddAssemblyAliases.tsx +5 -5
- package/src/components/AddChildFeature.tsx +3 -3
- package/src/components/AddFeature.tsx +4 -4
- package/src/components/AddRefSeqAliases.tsx +7 -7
- package/src/components/CopyFeature.tsx +8 -8
- package/src/components/CreateApolloAnnotation.tsx +5 -5
- package/src/components/DeleteAssembly.tsx +8 -8
- package/src/components/DeleteFeature.tsx +4 -4
- package/src/components/Dialog.tsx +1 -1
- package/src/components/DownloadGFF3.tsx +8 -8
- package/src/components/DuplicateTranscript.tsx +132 -0
- package/src/components/FilterFeatures.tsx +1 -1
- package/src/components/FilterTranscripts.tsx +1 -1
- package/src/components/ImportFeatures.tsx +51 -33
- package/src/components/LogOut.tsx +4 -4
- package/src/components/ManageChecks.tsx +8 -8
- package/src/components/ManageUsers.tsx +18 -26
- package/src/components/MergeExons.tsx +4 -4
- package/src/components/MergeTranscripts.tsx +4 -4
- package/src/components/OntologyTermAutocomplete.tsx +14 -4
- package/src/components/OntologyTermMultiSelect.tsx +12 -5
- package/src/components/OpenLocalFile.tsx +2 -2
- package/src/components/SplitExon.tsx +6 -6
- package/src/components/ViewChangeLog.tsx +8 -8
- package/src/components/ViewCheckResults.tsx +4 -4
- package/src/components/index.ts +1 -0
- package/src/config.ts +1 -1
- package/src/extensions/annotationFromJBrowseFeature.ts +29 -24
- package/src/extensions/annotationFromPileup.ts +8 -6
- package/src/index.ts +25 -1
- package/src/makeDisplayComponent.tsx +8 -5
- package/src/menus/topLevelMenu.ts +4 -4
- package/src/menus/topLevelMenuAdmin.ts +4 -4
- package/src/session/ClientDataStore.ts +20 -15
- package/src/session/session.ts +30 -19
- package/src/types.ts +10 -4
- package/src/util/annotationFeatureUtils.ts +1 -1
- package/src/util/displayUtils.ts +3 -3
- package/src/util/glyphUtils.ts +10 -10
- package/src/util/index.ts +4 -4
- package/src/util/loadAssemblyIntoClient.ts +4 -4
- package/src/util/mouseEventsUtils.ts +2 -2
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