@apollo-annotation/jbrowse-plugin-apollo 0.3.11 → 0.3.12
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts +6 -0
- package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts.map +1 -0
- package/dist/ApolloInternetAccount/components/LoginButtons.d.ts +5 -0
- package/dist/ApolloInternetAccount/components/LoginButtons.d.ts.map +1 -0
- package/dist/ApolloInternetAccount/components/LoginIcons.d.ts +4 -0
- package/dist/ApolloInternetAccount/components/LoginIcons.d.ts.map +1 -0
- package/dist/ApolloInternetAccount/index.d.ts +3 -0
- package/dist/ApolloInternetAccount/index.d.ts.map +1 -0
- package/dist/ApolloJobModel.d.ts +53 -0
- package/dist/ApolloJobModel.d.ts.map +1 -0
- package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts +12 -0
- package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts.map +1 -0
- package/dist/ApolloRefNameAliasAdapter/index.d.ts +3 -0
- package/dist/ApolloRefNameAliasAdapter/index.d.ts.map +1 -0
- package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts +27 -0
- package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts.map +1 -0
- package/dist/ApolloSequenceAdapter/index.d.ts +3 -0
- package/dist/ApolloSequenceAdapter/index.d.ts.map +1 -0
- package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts +13 -0
- package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts.map +1 -0
- package/dist/ApolloTextSearchAdapter/index.d.ts +3 -0
- package/dist/ApolloTextSearchAdapter/index.d.ts.map +1 -0
- package/dist/BackendDrivers/BackendDriver.d.ts +26 -0
- package/dist/BackendDrivers/BackendDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/CollaborationServerDriver.d.ts +206 -0
- package/dist/BackendDrivers/CollaborationServerDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/DesktopFileDriver.d.ts +160 -0
- package/dist/BackendDrivers/DesktopFileDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/InMemoryFileDriver.d.ts +162 -0
- package/dist/BackendDrivers/InMemoryFileDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/index.d.ts +5 -0
- package/dist/BackendDrivers/index.d.ts.map +1 -0
- package/dist/ChangeManager.d.ts +24 -0
- package/dist/ChangeManager.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts +6 -0
- package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts +12 -0
- package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/AttributeKey.d.ts +4 -0
- package/dist/FeatureDetailsWidget/AttributeKey.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts +6 -0
- package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/Attributes.d.ts +9 -0
- package/dist/FeatureDetailsWidget/Attributes.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/BasicInformation.d.ts +8 -0
- package/dist/FeatureDetailsWidget/BasicInformation.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts +9 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts +5 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts +7 -0
- package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/NumberTextField.d.ts +8 -0
- package/dist/FeatureDetailsWidget/NumberTextField.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/Sequence.d.ts +10 -0
- package/dist/FeatureDetailsWidget/Sequence.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/StringTextField.d.ts +8 -0
- package/dist/FeatureDetailsWidget/StringTextField.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts +10 -0
- package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts +9 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts +6 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/index.d.ts +5 -0
- package/dist/FeatureDetailsWidget/index.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/model.d.ts +123 -0
- package/dist/FeatureDetailsWidget/model.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts +5 -0
- package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts +7 -0
- package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/components/index.d.ts +2 -0
- package/dist/LinearApolloDisplay/components/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts +4 -0
- package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts +3 -0
- package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts +3 -0
- package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts +26 -0
- package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/index.d.ts +4 -0
- package/dist/LinearApolloDisplay/glyphs/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/util.d.ts +12 -0
- package/dist/LinearApolloDisplay/glyphs/util.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/index.d.ts +3 -0
- package/dist/LinearApolloDisplay/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/base.d.ts +254 -0
- package/dist/LinearApolloDisplay/stateModel/base.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/index.d.ts +349 -0
- package/dist/LinearApolloDisplay/stateModel/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/layouts.d.ts +273 -0
- package/dist/LinearApolloDisplay/stateModel/layouts.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts +656 -0
- package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/rendering.d.ts +300 -0
- package/dist/LinearApolloDisplay/stateModel/rendering.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/types.d.ts +2 -0
- package/dist/LinearApolloDisplay/types.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts +7 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts +2 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts +6 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts +5 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts +4 -0
- package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts +236 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts +245 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts +246 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts +7 -0
- package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts +8 -0
- package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/components/index.d.ts +3 -0
- package/dist/LinearApolloSixFrameDisplay/components/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts +3 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts +20 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts +2 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/index.d.ts +3 -0
- package/dist/LinearApolloSixFrameDisplay/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts +257 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts +355 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts +283 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts +668 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts +306 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/types.d.ts +2 -0
- package/dist/LinearApolloSixFrameDisplay/types.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts +8 -0
- package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/fulltext.d.ts +27 -0
- package/dist/OntologyManager/OntologyStore/fulltext.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/index.d.ts +93 -0
- package/dist/OntologyManager/OntologyStore/index.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts +71 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts +11 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts +107 -0
- package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/prefixes.d.ts +20 -0
- package/dist/OntologyManager/OntologyStore/prefixes.d.ts.map +1 -0
- package/dist/OntologyManager/util.d.ts +4 -0
- package/dist/OntologyManager/util.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts +6 -0
- package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/Feature.d.ts +13 -0
- package/dist/TabularEditor/HybridGrid/Feature.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts +6 -0
- package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/Highlight.d.ts +6 -0
- package/dist/TabularEditor/HybridGrid/Highlight.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts +14 -0
- package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/NumberCell.d.ts +8 -0
- package/dist/TabularEditor/HybridGrid/NumberCell.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/ToolBar.d.ts +5 -0
- package/dist/TabularEditor/HybridGrid/ToolBar.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts +11 -0
- package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/index.d.ts +2 -0
- package/dist/TabularEditor/HybridGrid/index.d.ts.map +1 -0
- package/dist/TabularEditor/TabularEditorPane.d.ts +5 -0
- package/dist/TabularEditor/TabularEditorPane.d.ts.map +1 -0
- package/dist/TabularEditor/index.d.ts +3 -0
- package/dist/TabularEditor/index.d.ts.map +1 -0
- package/dist/TabularEditor/model.d.ts +17 -0
- package/dist/TabularEditor/model.d.ts.map +1 -0
- package/dist/TabularEditor/types.d.ts +4 -0
- package/dist/TabularEditor/types.d.ts.map +1 -0
- package/dist/components/AddAssembly.d.ts +10 -0
- package/dist/components/AddAssembly.d.ts.map +1 -0
- package/dist/components/AddAssemblyAliases.d.ts +10 -0
- package/dist/components/AddAssemblyAliases.d.ts.map +1 -0
- package/dist/components/AddChildFeature.d.ts +13 -0
- package/dist/components/AddChildFeature.d.ts.map +1 -0
- package/dist/components/AddFeature.d.ts +12 -0
- package/dist/components/AddFeature.d.ts.map +1 -0
- package/dist/components/AddRefSeqAliases.d.ts +10 -0
- package/dist/components/AddRefSeqAliases.d.ts.map +1 -0
- package/dist/components/CopyFeature.d.ts +13 -0
- package/dist/components/CopyFeature.d.ts.map +1 -0
- package/dist/components/CreateApolloAnnotation.d.ts +20 -0
- package/dist/components/CreateApolloAnnotation.d.ts.map +1 -0
- package/dist/components/DeleteAssembly.d.ts +10 -0
- package/dist/components/DeleteAssembly.d.ts.map +1 -0
- package/dist/components/DeleteFeature.d.ts +15 -0
- package/dist/components/DeleteFeature.d.ts.map +1 -0
- package/dist/components/Dialog.d.ts +7 -0
- package/dist/components/Dialog.d.ts.map +1 -0
- package/dist/components/DownloadGFF3.d.ts +8 -0
- package/dist/components/DownloadGFF3.d.ts.map +1 -0
- package/dist/components/DuplicateTranscript.d.ts +15 -0
- package/dist/components/DuplicateTranscript.d.ts.map +1 -0
- package/dist/components/EditZoomThresholdDialog.d.ts +11 -0
- package/dist/components/EditZoomThresholdDialog.d.ts.map +1 -0
- package/dist/components/FilterFeatures.d.ts +10 -0
- package/dist/components/FilterFeatures.d.ts.map +1 -0
- package/dist/components/FilterTranscripts.d.ts +10 -0
- package/dist/components/FilterTranscripts.d.ts.map +1 -0
- package/dist/components/ImportFeatures.d.ts +10 -0
- package/dist/components/ImportFeatures.d.ts.map +1 -0
- package/dist/components/LogOut.d.ts +8 -0
- package/dist/components/LogOut.d.ts.map +1 -0
- package/dist/components/ManageChecks.d.ts +8 -0
- package/dist/components/ManageChecks.d.ts.map +1 -0
- package/dist/components/ManageUsers.d.ts +10 -0
- package/dist/components/ManageUsers.d.ts.map +1 -0
- package/dist/components/MergeExons.d.ts +15 -0
- package/dist/components/MergeExons.d.ts.map +1 -0
- package/dist/components/MergeTranscripts.d.ts +15 -0
- package/dist/components/MergeTranscripts.d.ts.map +1 -0
- package/dist/components/OntologyTermAutocomplete.d.ts +25 -0
- package/dist/components/OntologyTermAutocomplete.d.ts.map +1 -0
- package/dist/components/OntologyTermMultiSelect.d.ts +12 -0
- package/dist/components/OntologyTermMultiSelect.d.ts.map +1 -0
- package/dist/components/OpenLocalFile.d.ts +15 -0
- package/dist/components/OpenLocalFile.d.ts.map +1 -0
- package/dist/components/SplitExon.d.ts +15 -0
- package/dist/components/SplitExon.d.ts.map +1 -0
- package/dist/components/ViewChangeLog.d.ts +8 -0
- package/dist/components/ViewChangeLog.d.ts.map +1 -0
- package/dist/components/ViewCheckResults.d.ts +8 -0
- package/dist/components/ViewCheckResults.d.ts.map +1 -0
- package/dist/components/index.d.ts +21 -0
- package/dist/components/index.d.ts.map +1 -0
- package/dist/extensions/annotationFromJBrowseFeature.d.ts +6 -0
- package/dist/extensions/annotationFromJBrowseFeature.d.ts.map +1 -0
- package/dist/extensions/annotationFromPileup.d.ts +3 -0
- package/dist/extensions/annotationFromPileup.d.ts.map +1 -0
- package/dist/extensions/index.d.ts +3 -0
- package/dist/extensions/index.d.ts.map +1 -0
- package/dist/index.esm.js +843 -1330
- package/dist/index.esm.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.cjs.development.js +919 -1455
- package/dist/jbrowse-plugin-apollo.cjs.development.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.cjs.production.min.js +1 -1
- package/dist/jbrowse-plugin-apollo.cjs.production.min.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.umd.development.js +46351 -63687
- package/dist/jbrowse-plugin-apollo.umd.development.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.umd.production.min.js +1 -1
- package/dist/jbrowse-plugin-apollo.umd.production.min.js.map +1 -1
- package/dist/makeDisplayComponent.d.ts +9 -0
- package/dist/makeDisplayComponent.d.ts.map +1 -0
- package/dist/menus/index.d.ts +2 -0
- package/dist/menus/index.d.ts.map +1 -0
- package/dist/menus/topLevelMenu.d.ts +3 -0
- package/dist/menus/topLevelMenu.d.ts.map +1 -0
- package/dist/menus/topLevelMenuAdmin.d.ts +3 -0
- package/dist/menus/topLevelMenuAdmin.d.ts.map +1 -0
- package/dist/session/index.d.ts +2 -0
- package/dist/session/index.d.ts.map +1 -0
- package/dist/types.d.ts +10 -0
- package/dist/types.d.ts.map +1 -0
- package/dist/util/annotationFeatureUtils.d.ts +7 -0
- package/dist/util/annotationFeatureUtils.d.ts.map +1 -0
- package/dist/util/copyToClipboard.d.ts +2 -0
- package/dist/util/copyToClipboard.d.ts.map +1 -0
- package/dist/util/glyphUtils.d.ts +31 -0
- package/dist/util/glyphUtils.d.ts.map +1 -0
- package/dist/util/index.d.ts +10 -0
- package/dist/util/index.d.ts.map +1 -0
- package/dist/util/loadAssemblyIntoClient.d.ts +5 -0
- package/dist/util/loadAssemblyIntoClient.d.ts.map +1 -0
- package/dist/util/mouseEventsUtils.d.ts +25 -0
- package/dist/util/mouseEventsUtils.d.ts.map +1 -0
- package/package.json +48 -25
- package/src/ApolloInternetAccount/components/AuthTypeSelector.tsx +7 -2
- package/src/ApolloInternetAccount/components/LoginButtons.tsx +1 -1
- package/src/ApolloInternetAccount/configSchema.ts +1 -1
- package/src/ApolloInternetAccount/model.ts +13 -6
- package/src/ApolloJobModel.ts +3 -3
- package/src/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.ts +2 -2
- package/src/ApolloSequenceAdapter/ApolloSequenceAdapter.ts +2 -2
- package/src/ApolloTextSearchAdapter/ApolloTextSearchAdapter.ts +28 -5
- package/src/BackendDrivers/BackendDriver.ts +8 -8
- package/src/BackendDrivers/CollaborationServerDriver.ts +6 -6
- package/src/BackendDrivers/DesktopFileDriver.ts +4 -4
- package/src/BackendDrivers/InMemoryFileDriver.ts +5 -8
- package/src/ChangeManager.ts +8 -3
- package/src/FeatureDetailsWidget/ApolloFeatureDetailsWidget.tsx +3 -3
- package/src/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.tsx +7 -7
- package/src/FeatureDetailsWidget/AttributeKey.tsx +1 -1
- package/src/FeatureDetailsWidget/AttributeKeySelector.tsx +1 -1
- package/src/FeatureDetailsWidget/Attributes.tsx +4 -4
- package/src/FeatureDetailsWidget/BasicInformation.tsx +3 -3
- package/src/FeatureDetailsWidget/DefaultAttributeEditor.tsx +1 -1
- package/src/FeatureDetailsWidget/FeatureDetailsNavigation.tsx +2 -2
- package/src/FeatureDetailsWidget/Sequence.tsx +3 -3
- package/src/FeatureDetailsWidget/TranscriptSequence.tsx +2 -2
- package/src/FeatureDetailsWidget/TranscriptWidgetEditLocation.tsx +3 -6
- package/src/FeatureDetailsWidget/TranscriptWidgetSummary.tsx +1 -1
- package/src/FeatureDetailsWidget/model.ts +3 -3
- package/src/LinearApolloDisplay/components/CheckResultWarnings.tsx +2 -2
- package/src/LinearApolloDisplay/components/LinearApolloDisplay.tsx +6 -4
- package/src/LinearApolloDisplay/glyphs/BoxGlyph.ts +7 -7
- package/src/LinearApolloDisplay/glyphs/GeneGlyph.ts +56 -30
- package/src/LinearApolloDisplay/glyphs/GenericChildGlyph.ts +6 -6
- package/src/LinearApolloDisplay/glyphs/Glyph.ts +7 -7
- package/src/LinearApolloDisplay/glyphs/util.ts +2 -2
- package/src/LinearApolloDisplay/stateModel/base.ts +17 -8
- package/src/LinearApolloDisplay/stateModel/index.ts +2 -2
- package/src/LinearApolloDisplay/stateModel/layouts.ts +4 -4
- package/src/LinearApolloDisplay/stateModel/mouseEvents.ts +6 -6
- package/src/LinearApolloDisplay/stateModel/rendering.ts +3 -3
- package/src/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.tsx +4 -2
- package/src/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.ts +4 -4
- package/src/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.ts +3 -3
- package/src/LinearApolloReferenceSequenceDisplay/stateModel/base.ts +11 -8
- package/src/LinearApolloReferenceSequenceDisplay/stateModel/index.ts +2 -2
- package/src/LinearApolloReferenceSequenceDisplay/stateModel/rendering.ts +2 -2
- package/src/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.tsx +17 -9
- package/src/LinearApolloSixFrameDisplay/components/TrackLines.tsx +1 -1
- package/src/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.ts +36 -23
- package/src/LinearApolloSixFrameDisplay/glyphs/Glyph.ts +6 -6
- package/src/LinearApolloSixFrameDisplay/stateModel/base.ts +17 -8
- package/src/LinearApolloSixFrameDisplay/stateModel/index.ts +2 -2
- package/src/LinearApolloSixFrameDisplay/stateModel/layouts.ts +12 -8
- package/src/LinearApolloSixFrameDisplay/stateModel/mouseEvents.ts +11 -10
- package/src/LinearApolloSixFrameDisplay/stateModel/rendering.ts +3 -3
- package/src/OntologyManager/OntologyStore/fulltext.test.ts +1 -1
- package/src/OntologyManager/OntologyStore/fulltext.ts +11 -4
- package/src/OntologyManager/OntologyStore/index.test.ts +3 -0
- package/src/OntologyManager/OntologyStore/indexeddb-schema.ts +6 -6
- package/src/OntologyManager/OntologyStore/indexeddb-storage.ts +2 -1
- package/src/OntologyManager/index.ts +4 -4
- package/src/OntologyManager/util.ts +1 -1
- package/src/TabularEditor/HybridGrid/ChangeHandling.ts +2 -2
- package/src/TabularEditor/HybridGrid/Feature.tsx +6 -6
- package/src/TabularEditor/HybridGrid/FeatureAttributes.tsx +2 -2
- package/src/TabularEditor/HybridGrid/Highlight.tsx +1 -1
- package/src/TabularEditor/HybridGrid/HybridGrid.tsx +2 -2
- package/src/TabularEditor/HybridGrid/NumberCell.tsx +1 -1
- package/src/TabularEditor/HybridGrid/ToolBar.tsx +3 -2
- package/src/TabularEditor/HybridGrid/featureContextMenuItems.ts +26 -4
- package/src/TabularEditor/TabularEditorPane.tsx +1 -1
- package/src/TabularEditor/model.ts +2 -2
- package/src/TabularEditor/types.ts +2 -2
- package/src/components/AddAssembly.tsx +61 -42
- package/src/components/AddAssemblyAliases.tsx +5 -5
- package/src/components/AddChildFeature.tsx +3 -3
- package/src/components/AddFeature.tsx +4 -4
- package/src/components/AddRefSeqAliases.tsx +7 -7
- package/src/components/CopyFeature.tsx +8 -8
- package/src/components/CreateApolloAnnotation.tsx +5 -5
- package/src/components/DeleteAssembly.tsx +8 -8
- package/src/components/DeleteFeature.tsx +4 -4
- package/src/components/Dialog.tsx +1 -1
- package/src/components/DownloadGFF3.tsx +8 -8
- package/src/components/DuplicateTranscript.tsx +132 -0
- package/src/components/FilterFeatures.tsx +1 -1
- package/src/components/FilterTranscripts.tsx +1 -1
- package/src/components/ImportFeatures.tsx +51 -33
- package/src/components/LogOut.tsx +4 -4
- package/src/components/ManageChecks.tsx +8 -8
- package/src/components/ManageUsers.tsx +18 -26
- package/src/components/MergeExons.tsx +4 -4
- package/src/components/MergeTranscripts.tsx +4 -4
- package/src/components/OntologyTermAutocomplete.tsx +14 -4
- package/src/components/OntologyTermMultiSelect.tsx +12 -5
- package/src/components/OpenLocalFile.tsx +2 -2
- package/src/components/SplitExon.tsx +6 -6
- package/src/components/ViewChangeLog.tsx +8 -8
- package/src/components/ViewCheckResults.tsx +4 -4
- package/src/components/index.ts +1 -0
- package/src/config.ts +1 -1
- package/src/extensions/annotationFromJBrowseFeature.ts +29 -24
- package/src/extensions/annotationFromPileup.ts +8 -6
- package/src/index.ts +25 -1
- package/src/makeDisplayComponent.tsx +8 -5
- package/src/menus/topLevelMenu.ts +4 -4
- package/src/menus/topLevelMenuAdmin.ts +4 -4
- package/src/session/ClientDataStore.ts +20 -15
- package/src/session/session.ts +30 -19
- package/src/types.ts +10 -4
- package/src/util/annotationFeatureUtils.ts +1 -1
- package/src/util/displayUtils.ts +3 -3
- package/src/util/glyphUtils.ts +10 -10
- package/src/util/index.ts +4 -4
- package/src/util/loadAssemblyIntoClient.ts +4 -4
- package/src/util/mouseEventsUtils.ts +2 -2
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/** TS types for OBO Graph JSON (https://github.com/geneontology/obographs) */
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export interface GraphDocument {
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'@context'?: unknown;
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meta?: Meta;
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graphs?: Graph[];
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[k: string]: unknown;
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}
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export interface Meta {
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definition?: MetaDefinitionPropertyValue;
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comments?: string[];
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subsets?: string[];
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synonyms?: MetaSynonymPropertyValue[];
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xrefs?: MetaXrefPropertyValue[];
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basicPropertyValues?: MetaBasicPropertyValue[];
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version?: string;
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deprecated?: boolean;
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[k: string]: unknown;
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}
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export interface MetaDefinitionPropertyValue {
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pred?: string;
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val?: string;
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xrefs?: string[];
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meta?: Meta;
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[k: string]: unknown;
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}
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export interface MetaSynonymPropertyValue {
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synonymType?: string;
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pred?: string;
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val?: string;
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xrefs?: string[];
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meta?: Meta;
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[k: string]: unknown;
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}
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export interface MetaXrefPropertyValue {
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lbl?: string;
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pred?: string;
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val?: string;
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xrefs?: string[];
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meta?: Meta;
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[k: string]: unknown;
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}
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export interface MetaBasicPropertyValue {
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pred?: string;
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val?: string;
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xrefs?: string[];
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meta?: Meta;
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[k: string]: unknown;
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}
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export interface Graph {
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id?: string;
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lbl?: string;
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meta?: Meta;
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nodes?: Node[];
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edges?: Edge[];
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equivalentNodesSets?: AxiomEquivalentNodesSet[];
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logicalDefinitionAxioms?: LogicalDefinitionAxiom[];
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domainRangeAxioms?: DomainRangeAxiom[];
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}
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export interface Node {
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id?: string;
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lbl?: string;
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type?: 'CLASS' | 'INDIVIDUAL' | 'PROPERTY';
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meta?: Meta;
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[k: string]: unknown;
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}
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export interface Edge {
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sub?: string;
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pred?: string;
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obj?: string;
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meta?: Meta;
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[k: string]: unknown;
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}
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export interface AxiomEquivalentNodesSet {
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representativeNodeId?: string;
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nodeIds?: string[];
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meta?: Meta;
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[k: string]: unknown;
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}
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export interface LogicalDefinitionAxiom {
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definedClassId?: string;
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genusIds?: string[];
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restrictions?: AxiomExistentialRestrictionExpression[];
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meta?: Meta;
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[k: string]: unknown;
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}
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export interface AxiomExistentialRestrictionExpression {
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propertyId?: string;
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fillerId?: string;
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[k: string]: unknown;
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}
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export interface DomainRangeAxiom {
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predicateId?: string;
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domainClassIds?: string[];
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rangeClassIds?: string[];
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allValuesFromEdges?: Edge[];
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meta?: Meta;
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[k: string]: unknown;
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}
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export interface PropertyChainAxiom {
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predicateId?: string;
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chainPredicateIds?: string[];
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meta?: Meta;
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[k: string]: unknown;
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}
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//# sourceMappingURL=obo-graph-json-schema.d.ts.map
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{"version":3,"file":"obo-graph-json-schema.d.ts","sourceRoot":"","sources":["../../../src/OntologyManager/OntologyStore/obo-graph-json-schema.ts"],"names":[],"mappings":"AAAA,8EAA8E;AAE9E,MAAM,WAAW,aAAa;IAC5B,UAAU,CAAC,EAAE,OAAO,CAAA;IACpB,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,MAAM,CAAC,EAAE,KAAK,EAAE,CAAA;IAChB,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AAED,MAAM,WAAW,IAAI;IACnB,UAAU,CAAC,EAAE,2BAA2B,CAAA;IACxC,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAA;IACnB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAA;IAClB,QAAQ,CAAC,EAAE,wBAAwB,EAAE,CAAA;IACrC,KAAK,CAAC,EAAE,qBAAqB,EAAE,CAAA;IAC/B,mBAAmB,CAAC,EAAE,sBAAsB,EAAE,CAAA;IAC9C,OAAO,CAAC,EAAE,MAAM,CAAA;IAChB,UAAU,CAAC,EAAE,OAAO,CAAA;IACpB,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,2BAA2B;IAC1C,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,KAAK,CAAC,EAAE,MAAM,EAAE,CAAA;IAChB,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,wBAAwB;IACvC,WAAW,CAAC,EAAE,MAAM,CAAA;IACpB,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,KAAK,CAAC,EAAE,MAAM,EAAE,CAAA;IAChB,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,qBAAqB;IACpC,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,KAAK,CAAC,EAAE,MAAM,EAAE,CAAA;IAChB,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,sBAAsB;IACrC,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,KAAK,CAAC,EAAE,MAAM,EAAE,CAAA;IAChB,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AAED,MAAM,WAAW,KAAK;IACpB,EAAE,CAAC,EAAE,MAAM,CAAA;IACX,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,KAAK,CAAC,EAAE,IAAI,EAAE,CAAA;IACd,KAAK,CAAC,EAAE,IAAI,EAAE,CAAA;IAEd,mBAAmB,CAAC,EAAE,uBAAuB,EAAE,CAAA;IAC/C,uBAAuB,CAAC,EAAE,sBAAsB,EAAE,CAAA;IAClD,iBAAiB,CAAC,EAAE,gBAAgB,EAAE,CAAA;IACtC,mBAAmB,CAAC,EAAE,kBAAkB,EAAE,CAAA;IAC1C,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,IAAI;IACnB,EAAE,CAAC,EAAE,MAAM,CAAA;IACX,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,IAAI,CAAC,EAAE,OAAO,GAAG,YAAY,GAAG,UAAU,CAAA;IAC1C,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,IAAI;IACnB,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,uBAAuB;IACtC,oBAAoB,CAAC,EAAE,MAAM,CAAA;IAC7B,OAAO,CAAC,EAAE,MAAM,EAAE,CAAA;IAClB,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,sBAAsB;IACrC,cAAc,CAAC,EAAE,MAAM,CAAA;IACvB,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAA;IACnB,YAAY,CAAC,EAAE,qCAAqC,EAAE,CAAA;IACtD,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,qCAAqC;IACpD,UAAU,CAAC,EAAE,MAAM,CAAA;IACnB,QAAQ,CAAC,EAAE,MAAM,CAAA;IACjB,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,gBAAgB;IAC/B,WAAW,CAAC,EAAE,MAAM,CAAA;IACpB,cAAc,CAAC,EAAE,MAAM,EAAE,CAAA;IACzB,aAAa,CAAC,EAAE,MAAM,EAAE,CAAA;IACxB,kBAAkB,CAAC,EAAE,IAAI,EAAE,CAAA;IAC3B,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB;AACD,MAAM,WAAW,kBAAkB;IACjC,WAAW,CAAC,EAAE,MAAM,CAAA;IACpB,iBAAiB,CAAC,EAAE,MAAM,EAAE,CAAA;IAC5B,IAAI,CAAC,EAAE,IAAI,CAAA;IACX,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAAA;CACrB"}
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/**
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* This file contains stuff dealing with IRI prefixes used in ontologies.
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*
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* ```
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* const prefixes = new Map(['GO:', 'http://long.url/GO_'])
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*
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* applyPrefixes('http://long.url/GO_1234345') // returns 'GO:1234345'
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*
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* expandPrefixes('GO:1234345') // returns 'http://long.url/GO_1234345'
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* ```
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*/
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/**
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* compact the given URI using the given prefixes
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*/
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export declare function applyPrefixes(uri: string, prefixes: Map<string | number, string>): string;
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/**
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* expand the given compacted URI using given prefixes
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*/
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export declare function expandPrefixes(uri: string, prefixes: Map<string | number, string>): string;
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{"version":3,"file":"prefixes.d.ts","sourceRoot":"","sources":["../../../src/OntologyManager/OntologyStore/prefixes.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH;;GAEG;AACH,wBAAgB,aAAa,CAC3B,GAAG,EAAE,MAAM,EACX,QAAQ,EAAE,GAAG,CAAC,MAAM,GAAG,MAAM,EAAE,MAAM,CAAC,UAQvC;AAED;;GAEG;AACH,wBAAgB,cAAc,CAC5B,GAAG,EAAE,MAAM,EACX,QAAQ,EAAE,GAAG,CAAC,MAAM,GAAG,MAAM,EAAE,MAAM,CAAC,UAQvC"}
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import type { AnnotationFeature } from '@apollo-annotation/mst';
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import type OntologyStore from './OntologyStore';
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export declare function fetchValidDescendantTerms(parentFeature: AnnotationFeature | undefined, ontologyStore: OntologyStore, _signal: AbortSignal): Promise<import(".").OntologyClass[] | undefined>;
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//# sourceMappingURL=util.d.ts.map
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{"version":3,"file":"util.d.ts","sourceRoot":"","sources":["../../src/OntologyManager/util.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAE/D,OAAO,KAAK,aAAa,MAAM,iBAAiB,CAAA;AAIhD,wBAAsB,yBAAyB,CAC7C,aAAa,EAAE,iBAAiB,GAAG,SAAS,EAC5C,aAAa,EAAE,aAAa,EAC5B,OAAO,EAAE,WAAW,oDAwBrB"}
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import type { AnnotationFeature } from '@apollo-annotation/mst';
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import type { ChangeManager } from '../../ChangeManager';
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export declare function handleFeatureTypeChange(changeManager: ChangeManager, feature: AnnotationFeature, oldType: string, newType: string): Promise<void>;
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export declare function handleFeatureStartChange(changeManager: ChangeManager, feature: AnnotationFeature, oldStart: number, newStart: number): Promise<void>;
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export declare function handleFeatureEndChange(changeManager: ChangeManager, feature: AnnotationFeature, oldEnd: number, newEnd: number): Promise<void>;
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//# sourceMappingURL=ChangeHandling.d.ts.map
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{"version":3,"file":"ChangeHandling.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/ChangeHandling.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAO/D,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAA;AAExD,wBAAgB,uBAAuB,CACrC,aAAa,EAAE,aAAa,EAC5B,OAAO,EAAE,iBAAiB,EAC1B,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,MAAM,iBAYhB;AAED,wBAAgB,wBAAwB,CACtC,aAAa,EAAE,aAAa,EAC5B,OAAO,EAAE,iBAAiB,EAC1B,QAAQ,EAAE,MAAM,EAChB,QAAQ,EAAE,MAAM,iBAajB;AAED,wBAAgB,sBAAsB,CACpC,aAAa,EAAE,aAAa,EAC5B,OAAO,EAAE,iBAAiB,EAC1B,MAAM,EAAE,MAAM,EACd,MAAM,EAAE,MAAM,iBAYf"}
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import type { AnnotationFeature } from '@apollo-annotation/mst';
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import type { DisplayStateModel } from '../types';
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import type { ContextMenuState } from './HybridGrid';
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|
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export declare const Feature: ({ depth, feature, isHovered, isSelected, model: displayState, selectedFeatureClass, setContextMenu, }: {
|
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model: DisplayStateModel;
|
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feature: AnnotationFeature;
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depth: number;
|
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isHovered: boolean;
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9
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isSelected: boolean;
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selectedFeatureClass: string;
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setContextMenu: (menu: ContextMenuState) => void;
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}) => import("react/jsx-runtime").JSX.Element;
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//# sourceMappingURL=Feature.d.ts.map
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{"version":3,"file":"Feature.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/Feature.tsx"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAU/D,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,UAAU,CAAA;AAQjD,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,cAAc,CAAA;AA2EpD,eAAO,MAAM,OAAO,0GAQjB;IACD,KAAK,EAAE,iBAAiB,CAAA;IACxB,OAAO,EAAE,iBAAiB,CAAA;IAC1B,KAAK,EAAE,MAAM,CAAA;IACb,SAAS,EAAE,OAAO,CAAA;IAClB,UAAU,EAAE,OAAO,CAAA;IACnB,oBAAoB,EAAE,MAAM,CAAA;IAC5B,cAAc,EAAE,CAAC,IAAI,EAAE,gBAAgB,KAAK,IAAI,CAAA;CACjD,4CAwKC,CAAA"}
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@@ -0,0 +1,6 @@
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1
|
+
import type { AnnotationFeature } from '@apollo-annotation/mst';
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|
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export declare const FeatureAttributes: ({ feature, filterText, }: {
|
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|
+
feature: AnnotationFeature;
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filterText: string;
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|
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}) => import("react/jsx-runtime").JSX.Element;
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//# sourceMappingURL=FeatureAttributes.d.ts.map
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1
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+
{"version":3,"file":"FeatureAttributes.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/FeatureAttributes.tsx"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAO/D,eAAO,MAAM,iBAAiB,6BAG3B;IACD,OAAO,EAAE,iBAAiB,CAAA;IAC1B,UAAU,EAAE,MAAM,CAAA;CACnB,4CAqBC,CAAA"}
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@@ -0,0 +1 @@
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1
|
+
{"version":3,"file":"Highlight.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/Highlight.tsx"],"names":[],"mappings":"AASA,QAAA,MAAM,SAAS,yBAGZ;IACD,IAAI,EAAE,MAAM,CAAA;IACZ,SAAS,EAAE,MAAM,CAAA;CAClB,4CAsBA,CAAA;AAED,eAAe,SAAS,CAAA"}
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@@ -0,0 +1,14 @@
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1
|
+
import { type MenuItem } from '@jbrowse/core/ui';
|
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2
|
+
import type { DisplayStateModel } from '../types';
|
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|
+
export type ContextMenuState = null | {
|
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position: {
|
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top: number;
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left: number;
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};
|
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items: MenuItem[];
|
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|
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};
|
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|
+
declare const HybridGrid: ({ model, }: {
|
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|
+
model: DisplayStateModel;
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|
+
}) => import("react/jsx-runtime").JSX.Element;
|
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export default HybridGrid;
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//# sourceMappingURL=HybridGrid.d.ts.map
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+
{"version":3,"file":"HybridGrid.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/HybridGrid.tsx"],"names":[],"mappings":"AAAA,OAAO,EAAQ,KAAK,QAAQ,EAAE,MAAM,kBAAkB,CAAA;AAMtD,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,UAAU,CAAA;AAuBjD,MAAM,MAAM,gBAAgB,GAAG,IAAI,GAAG;IACpC,QAAQ,EAAE;QAAE,GAAG,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAA;KAAE,CAAA;IACvC,KAAK,EAAE,QAAQ,EAAE,CAAA;CAClB,CAAA;AAED,QAAA,MAAM,UAAU,eAEb;IACD,KAAK,EAAE,iBAAiB,CAAA;CACzB,4CAmGC,CAAA;AAEF,eAAe,UAAU,CAAA"}
|
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@@ -0,0 +1,8 @@
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1
|
+
interface NumberCellProps {
|
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2
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+
initialValue: number;
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|
+
notifyError(error: Error): void;
|
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|
+
onChangeCommitted(newValue: number): Promise<void>;
|
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|
+
}
|
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6
|
+
export declare const NumberCell: ({ initialValue, notifyError, onChangeCommitted, }: NumberCellProps) => import("react/jsx-runtime").JSX.Element;
|
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|
+
export {};
|
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//# sourceMappingURL=NumberCell.d.ts.map
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1
|
+
{"version":3,"file":"NumberCell.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/NumberCell.tsx"],"names":[],"mappings":"AAuBA,UAAU,eAAe;IACvB,YAAY,EAAE,MAAM,CAAA;IACpB,WAAW,CAAC,KAAK,EAAE,KAAK,GAAG,IAAI,CAAA;IAC/B,iBAAiB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAAA;CACnD;AAED,eAAO,MAAM,UAAU,sDAIpB,eAAe,4CAsDhB,CAAA"}
|
|
@@ -0,0 +1 @@
|
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|
1
|
+
{"version":3,"file":"ToolBar.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/ToolBar.tsx"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,UAAU,CAAA;AAcjD,eAAO,MAAM,OAAO,6BAEjB;IACD,KAAK,EAAE,iBAAiB,CAAA;CACzB,4CAyCC,CAAA"}
|
|
@@ -0,0 +1,11 @@
|
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1
|
+
import type { AnnotationFeature } from '@apollo-annotation/mst';
|
|
2
|
+
import type { MenuItem } from '@jbrowse/core/ui';
|
|
3
|
+
import type { ChangeManager } from '../../ChangeManager';
|
|
4
|
+
import type { ApolloSessionModel } from '../../session';
|
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|
+
export declare function featureContextMenuItems(feature: AnnotationFeature | undefined, region: {
|
|
6
|
+
assemblyName: string;
|
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7
|
+
refName: string;
|
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|
+
start: number;
|
|
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|
+
end: number;
|
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|
+
}, getAssemblyId: (assemblyName: string) => string, selectedFeature: AnnotationFeature | undefined, setSelectedFeature: (f: AnnotationFeature | undefined) => void, session: ApolloSessionModel, changeManager: ChangeManager, filteredTranscripts: string[], updateFilteredTranscripts: (forms: string[]) => void): MenuItem[];
|
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11
|
+
//# sourceMappingURL=featureContextMenuItems.d.ts.map
|
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@@ -0,0 +1 @@
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1
|
+
{"version":3,"file":"featureContextMenuItems.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/featureContextMenuItems.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC/D,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAA;AAOhD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAA;AAUxD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAA;AAGvD,wBAAgB,uBAAuB,CACrC,OAAO,EAAE,iBAAiB,GAAG,SAAS,EACtC,MAAM,EAAE;IAAE,YAAY,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAA;CAAE,EAC7E,aAAa,EAAE,CAAC,YAAY,EAAE,MAAM,KAAK,MAAM,EAC/C,eAAe,EAAE,iBAAiB,GAAG,SAAS,EAC9C,kBAAkB,EAAE,CAAC,CAAC,EAAE,iBAAiB,GAAG,SAAS,KAAK,IAAI,EAC9D,OAAO,EAAE,kBAAkB,EAC3B,aAAa,EAAE,aAAa,EAC5B,mBAAmB,EAAE,MAAM,EAAE,EAC7B,yBAAyB,EAAE,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,IAAI,cAkOrD"}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/TabularEditor/HybridGrid/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,cAAc,CAAA"}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"TabularEditorPane.d.ts","sourceRoot":"","sources":["../../src/TabularEditor/TabularEditorPane.tsx"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,SAAS,CAAA;AAMhD,eAAO,MAAM,iBAAiB,6BAE3B;IACD,KAAK,EAAE,iBAAiB,CAAA;CACzB,mDAkBC,CAAA"}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/TabularEditor/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAA;AAEvD,OAAO,EAAE,2BAA2B,EAAE,MAAM,SAAS,CAAA"}
|
|
@@ -0,0 +1,17 @@
|
|
|
1
|
+
import { type Instance } from '@jbrowse/mobx-state-tree';
|
|
2
|
+
export declare const TabularEditorStateModelType: import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3
|
+
isShown: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
4
|
+
featureCollapsed: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
5
|
+
filterText: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
|
|
6
|
+
}, {
|
|
7
|
+
setFeatureCollapsed(id: string, state: boolean): void;
|
|
8
|
+
setFilterText(text: string): void;
|
|
9
|
+
clearFilterText(): void;
|
|
10
|
+
collapseAllFeatures(): void;
|
|
11
|
+
togglePane(): void;
|
|
12
|
+
hidePane(): void;
|
|
13
|
+
showPane(): void;
|
|
14
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
|
|
15
|
+
export interface TabularEditorStateModel extends Instance<typeof TabularEditorStateModelType> {
|
|
16
|
+
}
|
|
17
|
+
//# sourceMappingURL=model.d.ts.map
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|
@@ -0,0 +1 @@
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|
1
|
+
{"version":3,"file":"model.d.ts","sourceRoot":"","sources":["../../src/TabularEditor/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,QAAQ,EAAoB,MAAM,0BAA0B,CAAA;AAI1E,eAAO,MAAM,2BAA2B;;;;;4BAOZ,MAAM,SAAS,OAAO;wBAG1B,MAAM;;;;;;wGAyBzB,CAAA;AAKL,MAAM,WAAW,uBACf,SAAQ,QAAQ,CAAC,OAAO,2BAA2B,CAAC;CAAG"}
|
|
@@ -0,0 +1,4 @@
|
|
|
1
|
+
import type { LinearApolloDisplay } from '../LinearApolloDisplay/stateModel';
|
|
2
|
+
import type { LinearApolloSixFrameDisplay } from '../LinearApolloSixFrameDisplay/stateModel';
|
|
3
|
+
export type DisplayStateModel = LinearApolloDisplay | LinearApolloSixFrameDisplay;
|
|
4
|
+
//# sourceMappingURL=types.d.ts.map
|
|
@@ -0,0 +1 @@
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|
1
|
+
{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../src/TabularEditor/types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,mCAAmC,CAAA;AAC5E,OAAO,KAAK,EAAE,2BAA2B,EAAE,MAAM,2CAA2C,CAAA;AAE5F,MAAM,MAAM,iBAAiB,GACzB,mBAAmB,GACnB,2BAA2B,CAAA"}
|
|
@@ -0,0 +1,10 @@
|
|
|
1
|
+
import type { ChangeManager } from '../ChangeManager';
|
|
2
|
+
import type { ApolloSessionModel } from '../session';
|
|
3
|
+
interface AddAssemblyProps {
|
|
4
|
+
session: ApolloSessionModel;
|
|
5
|
+
handleClose(): void;
|
|
6
|
+
changeManager: ChangeManager;
|
|
7
|
+
}
|
|
8
|
+
export declare function AddAssembly({ changeManager, handleClose, session, }: AddAssemblyProps): import("react/jsx-runtime").JSX.Element;
|
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9
|
+
export {};
|
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10
|
+
//# sourceMappingURL=AddAssembly.d.ts.map
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|
@@ -0,0 +1 @@
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1
|
+
{"version":3,"file":"AddAssembly.d.ts","sourceRoot":"","sources":["../../src/components/AddAssembly.tsx"],"names":[],"mappings":"AA8CA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAMpD,UAAU,gBAAgB;IACxB,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,aAAa,CAAA;CAC7B;AAgED,wBAAgB,WAAW,CAAC,EAC1B,aAAa,EACb,WAAW,EACX,OAAO,GACR,EAAE,gBAAgB,2CA+qBlB"}
|
|
@@ -0,0 +1,10 @@
|
|
|
1
|
+
import type { ChangeManager } from '../ChangeManager';
|
|
2
|
+
import type { ApolloSessionModel } from '../session';
|
|
3
|
+
interface AddAssemblyAliasProps {
|
|
4
|
+
session: ApolloSessionModel;
|
|
5
|
+
handleClose: () => void;
|
|
6
|
+
changeManager: ChangeManager;
|
|
7
|
+
}
|
|
8
|
+
export declare function AddAssemblyAliases({ changeManager, handleClose, session, }: AddAssemblyAliasProps): import("react/jsx-runtime").JSX.Element;
|
|
9
|
+
export {};
|
|
10
|
+
//# sourceMappingURL=AddAssemblyAliases.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"AddAssemblyAliases.d.ts","sourceRoot":"","sources":["../../src/components/AddAssemblyAliases.tsx"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAIpD,UAAU,qBAAqB;IAC7B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,EAAE,MAAM,IAAI,CAAA;IACvB,aAAa,EAAE,aAAa,CAAA;CAC7B;AAuBD,wBAAgB,kBAAkB,CAAC,EACjC,aAAa,EACb,WAAW,EACX,OAAO,GACR,EAAE,qBAAqB,2CAoEvB"}
|
|
@@ -0,0 +1,13 @@
|
|
|
1
|
+
import type { AnnotationFeature } from '@apollo-annotation/mst';
|
|
2
|
+
import type { ChangeManager } from '../ChangeManager';
|
|
3
|
+
import type { ApolloSessionModel } from '../session';
|
|
4
|
+
interface AddChildFeatureProps {
|
|
5
|
+
session: ApolloSessionModel;
|
|
6
|
+
handleClose(): void;
|
|
7
|
+
sourceFeature: AnnotationFeature;
|
|
8
|
+
sourceAssemblyId: string;
|
|
9
|
+
changeManager: ChangeManager;
|
|
10
|
+
}
|
|
11
|
+
export declare function AddChildFeature({ changeManager, handleClose, session, sourceAssemblyId, sourceFeature, }: AddChildFeatureProps): import("react/jsx-runtime").JSX.Element;
|
|
12
|
+
export {};
|
|
13
|
+
//# sourceMappingURL=AddChildFeature.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"AddChildFeature.d.ts","sourceRoot":"","sources":["../../src/components/AddChildFeature.tsx"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAY/D,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AAIrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAKpD,UAAU,oBAAoB;IAC5B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,iBAAiB,CAAA;IAChC,gBAAgB,EAAE,MAAM,CAAA;IACxB,aAAa,EAAE,aAAa,CAAA;CAC7B;AAED,wBAAgB,eAAe,CAAC,EAC9B,aAAa,EACb,WAAW,EACX,OAAO,EACP,gBAAgB,EAChB,aAAa,GACd,EAAE,oBAAoB,2CAsItB"}
|
|
@@ -0,0 +1,12 @@
|
|
|
1
|
+
import type { Region } from '@jbrowse/core/util/types';
|
|
2
|
+
import type { ChangeManager } from '../ChangeManager';
|
|
3
|
+
import type { ApolloSessionModel } from '../session';
|
|
4
|
+
interface AddFeatureProps {
|
|
5
|
+
session: ApolloSessionModel;
|
|
6
|
+
handleClose(): void;
|
|
7
|
+
region: Region;
|
|
8
|
+
changeManager: ChangeManager;
|
|
9
|
+
}
|
|
10
|
+
export declare function AddFeature({ changeManager, handleClose, region, session, }: AddFeatureProps): import("react/jsx-runtime").JSX.Element;
|
|
11
|
+
export {};
|
|
12
|
+
//# sourceMappingURL=AddFeature.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"AddFeature.d.ts","sourceRoot":"","sources":["../../src/components/AddFeature.tsx"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,0BAA0B,CAAA;AAwBtD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AAErD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAKpD,UAAU,eAAe;IACvB,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,MAAM,EAAE,MAAM,CAAA;IACd,aAAa,EAAE,aAAa,CAAA;CAC7B;AAiDD,wBAAgB,UAAU,CAAC,EACzB,aAAa,EACb,WAAW,EACX,MAAM,EACN,OAAO,GACR,EAAE,eAAe,2CAiSjB"}
|
|
@@ -0,0 +1,10 @@
|
|
|
1
|
+
import type { ChangeManager } from '../ChangeManager';
|
|
2
|
+
import type { ApolloSessionModel } from '../session';
|
|
3
|
+
interface AddChildFeatureProps {
|
|
4
|
+
session: ApolloSessionModel;
|
|
5
|
+
handleClose(): void;
|
|
6
|
+
changeManager: ChangeManager;
|
|
7
|
+
}
|
|
8
|
+
export declare const AddRefSeqAliases: ({ changeManager, handleClose, session, }: AddChildFeatureProps) => import("react/jsx-runtime").JSX.Element;
|
|
9
|
+
export {};
|
|
10
|
+
//# sourceMappingURL=AddRefSeqAliases.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"AddRefSeqAliases.d.ts","sourceRoot":"","sources":["../../src/components/AddRefSeqAliases.tsx"],"names":[],"mappings":"AAgCA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AASpD,UAAU,oBAAoB;IAC5B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,aAAa,CAAA;CAC7B;AAOD,eAAO,MAAM,gBAAgB,6CAI1B,oBAAoB,4CAmPrB,CAAA"}
|
|
@@ -0,0 +1,13 @@
|
|
|
1
|
+
import type { AnnotationFeature } from '@apollo-annotation/mst';
|
|
2
|
+
import type { ChangeManager } from '../ChangeManager';
|
|
3
|
+
import type { ApolloSessionModel } from '../session';
|
|
4
|
+
interface CopyFeatureProps {
|
|
5
|
+
session: ApolloSessionModel;
|
|
6
|
+
handleClose(): void;
|
|
7
|
+
sourceFeature: AnnotationFeature;
|
|
8
|
+
sourceAssemblyId: string;
|
|
9
|
+
changeManager: ChangeManager;
|
|
10
|
+
}
|
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11
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+
export declare function CopyFeature({ changeManager, handleClose, session, sourceAssemblyId, sourceFeature, }: CopyFeatureProps): import("react/jsx-runtime").JSX.Element;
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export {};
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//# sourceMappingURL=CopyFeature.d.ts.map
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{"version":3,"file":"CopyFeature.d.ts","sourceRoot":"","sources":["../../src/components/CopyFeature.tsx"],"names":[],"mappings":"AAKA,OAAO,KAAK,EACV,iBAAiB,EAElB,MAAM,wBAAwB,CAAA;AAmB/B,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAIpD,UAAU,gBAAgB;IACxB,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,iBAAiB,CAAA;IAChC,gBAAgB,EAAE,MAAM,CAAA;IACxB,aAAa,EAAE,aAAa,CAAA;CAC7B;AAwCD,wBAAgB,WAAW,CAAC,EAC1B,aAAa,EACb,WAAW,EACX,OAAO,EACP,gBAAgB,EAChB,aAAa,GACd,EAAE,gBAAgB,2CA4OlB"}
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@@ -0,0 +1,20 @@
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1
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+
import type { AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
|
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2
|
+
import type { Assembly } from '@jbrowse/core/assemblyManager/assembly';
|
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3
|
+
import type { AbstractSessionModel } from '@jbrowse/core/util';
|
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4
|
+
interface CreateApolloAnnotationProps {
|
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5
|
+
session: AbstractSessionModel;
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6
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+
handleClose(): void;
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7
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+
annotationFeature: AnnotationFeatureSnapshot;
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assembly: Assembly;
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9
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+
refSeqId: string;
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+
region: {
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+
start: number;
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12
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+
end: number;
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13
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+
};
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14
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+
}
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15
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+
export declare function getFeatureName(feature: AnnotationFeatureSnapshot): string;
|
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16
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+
export declare function getGeneNameOrId(feature: AnnotationFeatureSnapshot): string;
|
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17
|
+
export declare function getFeatureId(feature: AnnotationFeatureSnapshot): string;
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18
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+
export declare function CreateApolloAnnotation({ annotationFeature, assembly, handleClose, refSeqId, session, region, }: CreateApolloAnnotationProps): import("react/jsx-runtime").JSX.Element;
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+
export {};
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+
//# sourceMappingURL=CreateApolloAnnotation.d.ts.map
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@@ -0,0 +1 @@
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1
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+
{"version":3,"file":"CreateApolloAnnotation.d.ts","sourceRoot":"","sources":["../../src/components/CreateApolloAnnotation.tsx"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,yBAAyB,EAAE,MAAM,wBAAwB,CAAA;AAMvE,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,wCAAwC,CAAA;AACtE,OAAO,KAAK,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAA;AAwB9D,UAAU,2BAA2B;IACnC,OAAO,EAAE,oBAAoB,CAAA;IAC7B,WAAW,IAAI,IAAI,CAAA;IACnB,iBAAiB,EAAE,yBAAyB,CAAA;IAC5C,QAAQ,EAAE,QAAQ,CAAA;IAClB,QAAQ,EAAE,MAAM,CAAA;IAChB,MAAM,EAAE;QACN,KAAK,EAAE,MAAM,CAAA;QACb,GAAG,EAAE,MAAM,CAAA;KACZ,CAAA;CACF;AAuDD,wBAAgB,cAAc,CAAC,OAAO,EAAE,yBAAyB,UAUhE;AAED,wBAAgB,eAAe,CAAC,OAAO,EAAE,yBAAyB,UAUjE;AAED,wBAAgB,YAAY,CAAC,OAAO,EAAE,yBAAyB,UAiB9D;AAcD,wBAAgB,sBAAsB,CAAC,EACrC,iBAAiB,EACjB,QAAQ,EACR,WAAW,EACX,QAAQ,EACR,OAAO,EACP,MAAM,GACP,EAAE,2BAA2B,2CA6b7B"}
|
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@@ -0,0 +1,10 @@
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|
1
|
+
import type { ChangeManager } from '../ChangeManager';
|
|
2
|
+
import type { ApolloSessionModel } from '../session';
|
|
3
|
+
interface DeleteAssemblyProps {
|
|
4
|
+
session: ApolloSessionModel;
|
|
5
|
+
handleClose(): void;
|
|
6
|
+
changeManager: ChangeManager;
|
|
7
|
+
}
|
|
8
|
+
export declare function DeleteAssembly({ changeManager, handleClose, session, }: DeleteAssemblyProps): import("react/jsx-runtime").JSX.Element;
|
|
9
|
+
export {};
|
|
10
|
+
//# sourceMappingURL=DeleteAssembly.d.ts.map
|
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@@ -0,0 +1 @@
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|
1
|
+
{"version":3,"file":"DeleteAssembly.d.ts","sourceRoot":"","sources":["../../src/components/DeleteAssembly.tsx"],"names":[],"mappings":"AAuBA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAKpD,UAAU,mBAAmB;IAC3B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,aAAa,CAAA;CAC7B;AAED,wBAAgB,cAAc,CAAC,EAC7B,aAAa,EACb,WAAW,EACX,OAAO,GACR,EAAE,mBAAmB,2CA+IrB"}
|
|
@@ -0,0 +1,15 @@
|
|
|
1
|
+
import type { AnnotationFeature } from '@apollo-annotation/mst';
|
|
2
|
+
import type { ChangeManager } from '../ChangeManager';
|
|
3
|
+
import type { ApolloSessionModel } from '../session';
|
|
4
|
+
interface DeleteFeatureProps {
|
|
5
|
+
session: ApolloSessionModel;
|
|
6
|
+
handleClose(): void;
|
|
7
|
+
sourceFeature: AnnotationFeature;
|
|
8
|
+
sourceAssemblyId: string;
|
|
9
|
+
changeManager: ChangeManager;
|
|
10
|
+
selectedFeature?: AnnotationFeature;
|
|
11
|
+
setSelectedFeature(feature?: AnnotationFeature): void;
|
|
12
|
+
}
|
|
13
|
+
export declare function DeleteFeature({ changeManager, handleClose, selectedFeature, session, setSelectedFeature, sourceAssemblyId, sourceFeature, }: DeleteFeatureProps): import("react/jsx-runtime").JSX.Element;
|
|
14
|
+
export {};
|
|
15
|
+
//# sourceMappingURL=DeleteFeature.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"DeleteFeature.d.ts","sourceRoot":"","sources":["../../src/components/DeleteFeature.tsx"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAe/D,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAYpD,UAAU,kBAAkB;IAC1B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,iBAAiB,CAAA;IAChC,gBAAgB,EAAE,MAAM,CAAA;IACxB,aAAa,EAAE,aAAa,CAAA;IAC5B,eAAe,CAAC,EAAE,iBAAiB,CAAA;IACnC,kBAAkB,CAAC,OAAO,CAAC,EAAE,iBAAiB,GAAG,IAAI,CAAA;CACtD;AAwDD,wBAAgB,aAAa,CAAC,EAC5B,aAAa,EACb,WAAW,EACX,eAAe,EACf,OAAO,EACP,kBAAkB,EAClB,gBAAgB,EAChB,aAAa,GACd,EAAE,kBAAkB,2CAiVpB"}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"Dialog.d.ts","sourceRoot":"","sources":["../../src/components/Dialog.tsx"],"names":[],"mappings":"AAIA,OAAO,EAAE,KAAK,WAAW,EAA2B,MAAM,eAAe,CAAA;AAkBzE,UAAU,KAAM,SAAQ,WAAW;IACjC,WAAW,IAAI,IAAI,CAAA;CACpB;AAED,eAAO,MAAM,MAAM,UAA0C,KAAK,4CAqBhE,CAAA"}
|
|
@@ -0,0 +1,8 @@
|
|
|
1
|
+
import type { ApolloSessionModel } from '../session';
|
|
2
|
+
interface DownloadGFF3Props {
|
|
3
|
+
session: ApolloSessionModel;
|
|
4
|
+
handleClose(): void;
|
|
5
|
+
}
|
|
6
|
+
export declare function DownloadGFF3({ handleClose, session }: DownloadGFF3Props): import("react/jsx-runtime").JSX.Element;
|
|
7
|
+
export {};
|
|
8
|
+
//# sourceMappingURL=DownloadGFF3.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"DownloadGFF3.d.ts","sourceRoot":"","sources":["../../src/components/DownloadGFF3.tsx"],"names":[],"mappings":"AA+BA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAKpD,UAAU,iBAAiB;IACzB,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;CACpB;AAED,wBAAgB,YAAY,CAAC,EAAE,WAAW,EAAE,OAAO,EAAE,EAAE,iBAAiB,2CAwMvE"}
|
|
@@ -0,0 +1,15 @@
|
|
|
1
|
+
import type { AnnotationFeature } from '@apollo-annotation/mst';
|
|
2
|
+
import type { ChangeManager } from '../ChangeManager';
|
|
3
|
+
import type { ApolloSessionModel } from '../session';
|
|
4
|
+
interface DuplicateTranscriptProps {
|
|
5
|
+
session: ApolloSessionModel;
|
|
6
|
+
handleClose(): void;
|
|
7
|
+
sourceFeature: AnnotationFeature;
|
|
8
|
+
sourceAssemblyId: string;
|
|
9
|
+
changeManager: ChangeManager;
|
|
10
|
+
selectedFeature?: AnnotationFeature;
|
|
11
|
+
setSelectedFeature(feature?: AnnotationFeature): void;
|
|
12
|
+
}
|
|
13
|
+
export declare function DuplicateTranscript({ changeManager, handleClose, session, sourceAssemblyId, sourceFeature, setSelectedFeature, }: DuplicateTranscriptProps): import("react/jsx-runtime").JSX.Element;
|
|
14
|
+
export {};
|
|
15
|
+
//# sourceMappingURL=DuplicateTranscript.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"DuplicateTranscript.d.ts","sourceRoot":"","sources":["../../src/components/DuplicateTranscript.tsx"],"names":[],"mappings":"AACA,OAAO,KAAK,EACV,iBAAiB,EAElB,MAAM,wBAAwB,CAAA;AAa/B,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAIpD,UAAU,wBAAwB;IAChC,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,iBAAiB,CAAA;IAChC,gBAAgB,EAAE,MAAM,CAAA;IACxB,aAAa,EAAE,aAAa,CAAA;IAC5B,eAAe,CAAC,EAAE,iBAAiB,CAAA;IACnC,kBAAkB,CAAC,OAAO,CAAC,EAAE,iBAAiB,GAAG,IAAI,CAAA;CACtD;AAED,wBAAgB,mBAAmB,CAAC,EAClC,aAAa,EACb,WAAW,EACX,OAAO,EACP,gBAAgB,EAChB,aAAa,EACb,kBAAkB,GACnB,EAAE,wBAAwB,2CA4F1B"}
|
|
@@ -0,0 +1,11 @@
|
|
|
1
|
+
declare const EditZoomThresholdDialog: ({ model, handleClose, }: {
|
|
2
|
+
model: {
|
|
3
|
+
zoomThresholdSetting: number;
|
|
4
|
+
setZoomThresholdSetting: (a: {
|
|
5
|
+
zoomThreshold: number;
|
|
6
|
+
}) => void;
|
|
7
|
+
};
|
|
8
|
+
handleClose: () => void;
|
|
9
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
10
|
+
export default EditZoomThresholdDialog;
|
|
11
|
+
//# sourceMappingURL=EditZoomThresholdDialog.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"EditZoomThresholdDialog.d.ts","sourceRoot":"","sources":["../../src/components/EditZoomThresholdDialog.tsx"],"names":[],"mappings":"AAWA,QAAA,MAAM,uBAAuB,4BAG1B;IACD,KAAK,EAAE;QACL,oBAAoB,EAAE,MAAM,CAAA;QAC5B,uBAAuB,EAAE,CAAC,CAAC,EAAE;YAAE,aAAa,EAAE,MAAM,CAAA;SAAE,KAAK,IAAI,CAAA;KAChE,CAAA;IACD,WAAW,EAAE,MAAM,IAAI,CAAA;CACxB,4CA8CC,CAAA;AAEF,eAAe,uBAAuB,CAAA"}
|
|
@@ -0,0 +1,10 @@
|
|
|
1
|
+
import type { ApolloSessionModel } from '../session';
|
|
2
|
+
interface FilterFeaturesProps {
|
|
3
|
+
onUpdate: (types: string[]) => void;
|
|
4
|
+
featureTypes: string[];
|
|
5
|
+
handleClose: () => void;
|
|
6
|
+
session: ApolloSessionModel;
|
|
7
|
+
}
|
|
8
|
+
export declare const FilterFeatures: ({ featureTypes, handleClose, onUpdate, session, }: FilterFeaturesProps) => import("react/jsx-runtime").JSX.Element;
|
|
9
|
+
export {};
|
|
10
|
+
//# sourceMappingURL=FilterFeatures.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"FilterFeatures.d.ts","sourceRoot":"","sources":["../../src/components/FilterFeatures.tsx"],"names":[],"mappings":"AAaA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAKpD,UAAU,mBAAmB;IAC3B,QAAQ,EAAE,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,IAAI,CAAA;IACnC,YAAY,EAAE,MAAM,EAAE,CAAA;IACtB,WAAW,EAAE,MAAM,IAAI,CAAA;IACvB,OAAO,EAAE,kBAAkB,CAAA;CAC5B;AAED,eAAO,MAAM,cAAc,sDAKxB,mBAAmB,4CA2FpB,CAAA"}
|
|
@@ -0,0 +1,10 @@
|
|
|
1
|
+
import type { AnnotationFeature } from '@apollo-annotation/mst';
|
|
2
|
+
interface FilterTranscriptsProps {
|
|
3
|
+
onUpdate: (forms: string[]) => void;
|
|
4
|
+
sourceFeature: AnnotationFeature;
|
|
5
|
+
filteredTranscripts: string[];
|
|
6
|
+
handleClose: () => void;
|
|
7
|
+
}
|
|
8
|
+
export declare const FilterTranscripts: ({ sourceFeature, filteredTranscripts, handleClose, onUpdate, }: FilterTranscriptsProps) => import("react/jsx-runtime").JSX.Element;
|
|
9
|
+
export {};
|
|
10
|
+
//# sourceMappingURL=FilterTranscripts.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"FilterTranscripts.d.ts","sourceRoot":"","sources":["../../src/components/FilterTranscripts.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAc/D,UAAU,sBAAsB;IAC9B,QAAQ,EAAE,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,IAAI,CAAA;IACnC,aAAa,EAAE,iBAAiB,CAAA;IAChC,mBAAmB,EAAE,MAAM,EAAE,CAAA;IAC7B,WAAW,EAAE,MAAM,IAAI,CAAA;CACxB;AAED,eAAO,MAAM,iBAAiB,mEAK3B,sBAAsB,4CA2DvB,CAAA"}
|
|
@@ -0,0 +1,10 @@
|
|
|
1
|
+
import type { ChangeManager } from '../ChangeManager';
|
|
2
|
+
import type { ApolloSessionModel } from '../session';
|
|
3
|
+
interface ImportFeaturesProps {
|
|
4
|
+
session: ApolloSessionModel;
|
|
5
|
+
handleClose(): void;
|
|
6
|
+
changeManager: ChangeManager;
|
|
7
|
+
}
|
|
8
|
+
export declare function ImportFeatures({ changeManager, handleClose, session, }: ImportFeaturesProps): import("react/jsx-runtime").JSX.Element;
|
|
9
|
+
export {};
|
|
10
|
+
//# sourceMappingURL=ImportFeatures.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"ImportFeatures.d.ts","sourceRoot":"","sources":["../../src/components/ImportFeatures.tsx"],"names":[],"mappings":"AA6BA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAKpD,UAAU,mBAAmB;IAC3B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,aAAa,CAAA;CAC7B;AAED,wBAAgB,cAAc,CAAC,EAC7B,aAAa,EACb,WAAW,EACX,OAAO,GACR,EAAE,mBAAmB,2CAqRrB"}
|