@apollo-annotation/jbrowse-plugin-apollo 0.3.11 → 0.3.12

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (395) hide show
  1. package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts +6 -0
  2. package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts.map +1 -0
  3. package/dist/ApolloInternetAccount/components/LoginButtons.d.ts +5 -0
  4. package/dist/ApolloInternetAccount/components/LoginButtons.d.ts.map +1 -0
  5. package/dist/ApolloInternetAccount/components/LoginIcons.d.ts +4 -0
  6. package/dist/ApolloInternetAccount/components/LoginIcons.d.ts.map +1 -0
  7. package/dist/ApolloInternetAccount/index.d.ts +3 -0
  8. package/dist/ApolloInternetAccount/index.d.ts.map +1 -0
  9. package/dist/ApolloJobModel.d.ts +53 -0
  10. package/dist/ApolloJobModel.d.ts.map +1 -0
  11. package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts +12 -0
  12. package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts.map +1 -0
  13. package/dist/ApolloRefNameAliasAdapter/index.d.ts +3 -0
  14. package/dist/ApolloRefNameAliasAdapter/index.d.ts.map +1 -0
  15. package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts +27 -0
  16. package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts.map +1 -0
  17. package/dist/ApolloSequenceAdapter/index.d.ts +3 -0
  18. package/dist/ApolloSequenceAdapter/index.d.ts.map +1 -0
  19. package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts +13 -0
  20. package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts.map +1 -0
  21. package/dist/ApolloTextSearchAdapter/index.d.ts +3 -0
  22. package/dist/ApolloTextSearchAdapter/index.d.ts.map +1 -0
  23. package/dist/BackendDrivers/BackendDriver.d.ts +26 -0
  24. package/dist/BackendDrivers/BackendDriver.d.ts.map +1 -0
  25. package/dist/BackendDrivers/CollaborationServerDriver.d.ts +206 -0
  26. package/dist/BackendDrivers/CollaborationServerDriver.d.ts.map +1 -0
  27. package/dist/BackendDrivers/DesktopFileDriver.d.ts +160 -0
  28. package/dist/BackendDrivers/DesktopFileDriver.d.ts.map +1 -0
  29. package/dist/BackendDrivers/InMemoryFileDriver.d.ts +162 -0
  30. package/dist/BackendDrivers/InMemoryFileDriver.d.ts.map +1 -0
  31. package/dist/BackendDrivers/index.d.ts +5 -0
  32. package/dist/BackendDrivers/index.d.ts.map +1 -0
  33. package/dist/ChangeManager.d.ts +24 -0
  34. package/dist/ChangeManager.d.ts.map +1 -0
  35. package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts +6 -0
  36. package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts.map +1 -0
  37. package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts +12 -0
  38. package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts.map +1 -0
  39. package/dist/FeatureDetailsWidget/AttributeKey.d.ts +4 -0
  40. package/dist/FeatureDetailsWidget/AttributeKey.d.ts.map +1 -0
  41. package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts +6 -0
  42. package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts.map +1 -0
  43. package/dist/FeatureDetailsWidget/Attributes.d.ts +9 -0
  44. package/dist/FeatureDetailsWidget/Attributes.d.ts.map +1 -0
  45. package/dist/FeatureDetailsWidget/BasicInformation.d.ts +8 -0
  46. package/dist/FeatureDetailsWidget/BasicInformation.d.ts.map +1 -0
  47. package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts +9 -0
  48. package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts.map +1 -0
  49. package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts +5 -0
  50. package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts.map +1 -0
  51. package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts +7 -0
  52. package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts.map +1 -0
  53. package/dist/FeatureDetailsWidget/NumberTextField.d.ts +8 -0
  54. package/dist/FeatureDetailsWidget/NumberTextField.d.ts.map +1 -0
  55. package/dist/FeatureDetailsWidget/Sequence.d.ts +10 -0
  56. package/dist/FeatureDetailsWidget/Sequence.d.ts.map +1 -0
  57. package/dist/FeatureDetailsWidget/StringTextField.d.ts +8 -0
  58. package/dist/FeatureDetailsWidget/StringTextField.d.ts.map +1 -0
  59. package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts +10 -0
  60. package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts.map +1 -0
  61. package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts +9 -0
  62. package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts.map +1 -0
  63. package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts +6 -0
  64. package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts.map +1 -0
  65. package/dist/FeatureDetailsWidget/index.d.ts +5 -0
  66. package/dist/FeatureDetailsWidget/index.d.ts.map +1 -0
  67. package/dist/FeatureDetailsWidget/model.d.ts +123 -0
  68. package/dist/FeatureDetailsWidget/model.d.ts.map +1 -0
  69. package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts +5 -0
  70. package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts.map +1 -0
  71. package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts +7 -0
  72. package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts.map +1 -0
  73. package/dist/LinearApolloDisplay/components/index.d.ts +2 -0
  74. package/dist/LinearApolloDisplay/components/index.d.ts.map +1 -0
  75. package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts +4 -0
  76. package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts.map +1 -0
  77. package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts +3 -0
  78. package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
  79. package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts +3 -0
  80. package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts.map +1 -0
  81. package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts +26 -0
  82. package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts.map +1 -0
  83. package/dist/LinearApolloDisplay/glyphs/index.d.ts +4 -0
  84. package/dist/LinearApolloDisplay/glyphs/index.d.ts.map +1 -0
  85. package/dist/LinearApolloDisplay/glyphs/util.d.ts +12 -0
  86. package/dist/LinearApolloDisplay/glyphs/util.d.ts.map +1 -0
  87. package/dist/LinearApolloDisplay/index.d.ts +3 -0
  88. package/dist/LinearApolloDisplay/index.d.ts.map +1 -0
  89. package/dist/LinearApolloDisplay/stateModel/base.d.ts +254 -0
  90. package/dist/LinearApolloDisplay/stateModel/base.d.ts.map +1 -0
  91. package/dist/LinearApolloDisplay/stateModel/index.d.ts +349 -0
  92. package/dist/LinearApolloDisplay/stateModel/index.d.ts.map +1 -0
  93. package/dist/LinearApolloDisplay/stateModel/layouts.d.ts +273 -0
  94. package/dist/LinearApolloDisplay/stateModel/layouts.d.ts.map +1 -0
  95. package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts +656 -0
  96. package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts.map +1 -0
  97. package/dist/LinearApolloDisplay/stateModel/rendering.d.ts +300 -0
  98. package/dist/LinearApolloDisplay/stateModel/rendering.d.ts.map +1 -0
  99. package/dist/LinearApolloDisplay/types.d.ts +2 -0
  100. package/dist/LinearApolloDisplay/types.d.ts.map +1 -0
  101. package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts +7 -0
  102. package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts.map +1 -0
  103. package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts +2 -0
  104. package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts.map +1 -0
  105. package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts +6 -0
  106. package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts.map +1 -0
  107. package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts +5 -0
  108. package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts.map +1 -0
  109. package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts +4 -0
  110. package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts.map +1 -0
  111. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts +236 -0
  112. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts.map +1 -0
  113. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts +245 -0
  114. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts.map +1 -0
  115. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts +246 -0
  116. package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts.map +1 -0
  117. package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts +7 -0
  118. package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts.map +1 -0
  119. package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts +8 -0
  120. package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts.map +1 -0
  121. package/dist/LinearApolloSixFrameDisplay/components/index.d.ts +3 -0
  122. package/dist/LinearApolloSixFrameDisplay/components/index.d.ts.map +1 -0
  123. package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts +3 -0
  124. package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
  125. package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts +20 -0
  126. package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts.map +1 -0
  127. package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts +2 -0
  128. package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts.map +1 -0
  129. package/dist/LinearApolloSixFrameDisplay/index.d.ts +3 -0
  130. package/dist/LinearApolloSixFrameDisplay/index.d.ts.map +1 -0
  131. package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts +257 -0
  132. package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts.map +1 -0
  133. package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts +355 -0
  134. package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts.map +1 -0
  135. package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts +283 -0
  136. package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts.map +1 -0
  137. package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts +668 -0
  138. package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts.map +1 -0
  139. package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts +306 -0
  140. package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts.map +1 -0
  141. package/dist/LinearApolloSixFrameDisplay/types.d.ts +2 -0
  142. package/dist/LinearApolloSixFrameDisplay/types.d.ts.map +1 -0
  143. package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts +8 -0
  144. package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts.map +1 -0
  145. package/dist/OntologyManager/OntologyStore/fulltext.d.ts +27 -0
  146. package/dist/OntologyManager/OntologyStore/fulltext.d.ts.map +1 -0
  147. package/dist/OntologyManager/OntologyStore/index.d.ts +93 -0
  148. package/dist/OntologyManager/OntologyStore/index.d.ts.map +1 -0
  149. package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts +71 -0
  150. package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts.map +1 -0
  151. package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts +11 -0
  152. package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts.map +1 -0
  153. package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts +107 -0
  154. package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts.map +1 -0
  155. package/dist/OntologyManager/OntologyStore/prefixes.d.ts +20 -0
  156. package/dist/OntologyManager/OntologyStore/prefixes.d.ts.map +1 -0
  157. package/dist/OntologyManager/util.d.ts +4 -0
  158. package/dist/OntologyManager/util.d.ts.map +1 -0
  159. package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts +6 -0
  160. package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts.map +1 -0
  161. package/dist/TabularEditor/HybridGrid/Feature.d.ts +13 -0
  162. package/dist/TabularEditor/HybridGrid/Feature.d.ts.map +1 -0
  163. package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts +6 -0
  164. package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts.map +1 -0
  165. package/dist/TabularEditor/HybridGrid/Highlight.d.ts +6 -0
  166. package/dist/TabularEditor/HybridGrid/Highlight.d.ts.map +1 -0
  167. package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts +14 -0
  168. package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts.map +1 -0
  169. package/dist/TabularEditor/HybridGrid/NumberCell.d.ts +8 -0
  170. package/dist/TabularEditor/HybridGrid/NumberCell.d.ts.map +1 -0
  171. package/dist/TabularEditor/HybridGrid/ToolBar.d.ts +5 -0
  172. package/dist/TabularEditor/HybridGrid/ToolBar.d.ts.map +1 -0
  173. package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts +11 -0
  174. package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts.map +1 -0
  175. package/dist/TabularEditor/HybridGrid/index.d.ts +2 -0
  176. package/dist/TabularEditor/HybridGrid/index.d.ts.map +1 -0
  177. package/dist/TabularEditor/TabularEditorPane.d.ts +5 -0
  178. package/dist/TabularEditor/TabularEditorPane.d.ts.map +1 -0
  179. package/dist/TabularEditor/index.d.ts +3 -0
  180. package/dist/TabularEditor/index.d.ts.map +1 -0
  181. package/dist/TabularEditor/model.d.ts +17 -0
  182. package/dist/TabularEditor/model.d.ts.map +1 -0
  183. package/dist/TabularEditor/types.d.ts +4 -0
  184. package/dist/TabularEditor/types.d.ts.map +1 -0
  185. package/dist/components/AddAssembly.d.ts +10 -0
  186. package/dist/components/AddAssembly.d.ts.map +1 -0
  187. package/dist/components/AddAssemblyAliases.d.ts +10 -0
  188. package/dist/components/AddAssemblyAliases.d.ts.map +1 -0
  189. package/dist/components/AddChildFeature.d.ts +13 -0
  190. package/dist/components/AddChildFeature.d.ts.map +1 -0
  191. package/dist/components/AddFeature.d.ts +12 -0
  192. package/dist/components/AddFeature.d.ts.map +1 -0
  193. package/dist/components/AddRefSeqAliases.d.ts +10 -0
  194. package/dist/components/AddRefSeqAliases.d.ts.map +1 -0
  195. package/dist/components/CopyFeature.d.ts +13 -0
  196. package/dist/components/CopyFeature.d.ts.map +1 -0
  197. package/dist/components/CreateApolloAnnotation.d.ts +20 -0
  198. package/dist/components/CreateApolloAnnotation.d.ts.map +1 -0
  199. package/dist/components/DeleteAssembly.d.ts +10 -0
  200. package/dist/components/DeleteAssembly.d.ts.map +1 -0
  201. package/dist/components/DeleteFeature.d.ts +15 -0
  202. package/dist/components/DeleteFeature.d.ts.map +1 -0
  203. package/dist/components/Dialog.d.ts +7 -0
  204. package/dist/components/Dialog.d.ts.map +1 -0
  205. package/dist/components/DownloadGFF3.d.ts +8 -0
  206. package/dist/components/DownloadGFF3.d.ts.map +1 -0
  207. package/dist/components/DuplicateTranscript.d.ts +15 -0
  208. package/dist/components/DuplicateTranscript.d.ts.map +1 -0
  209. package/dist/components/EditZoomThresholdDialog.d.ts +11 -0
  210. package/dist/components/EditZoomThresholdDialog.d.ts.map +1 -0
  211. package/dist/components/FilterFeatures.d.ts +10 -0
  212. package/dist/components/FilterFeatures.d.ts.map +1 -0
  213. package/dist/components/FilterTranscripts.d.ts +10 -0
  214. package/dist/components/FilterTranscripts.d.ts.map +1 -0
  215. package/dist/components/ImportFeatures.d.ts +10 -0
  216. package/dist/components/ImportFeatures.d.ts.map +1 -0
  217. package/dist/components/LogOut.d.ts +8 -0
  218. package/dist/components/LogOut.d.ts.map +1 -0
  219. package/dist/components/ManageChecks.d.ts +8 -0
  220. package/dist/components/ManageChecks.d.ts.map +1 -0
  221. package/dist/components/ManageUsers.d.ts +10 -0
  222. package/dist/components/ManageUsers.d.ts.map +1 -0
  223. package/dist/components/MergeExons.d.ts +15 -0
  224. package/dist/components/MergeExons.d.ts.map +1 -0
  225. package/dist/components/MergeTranscripts.d.ts +15 -0
  226. package/dist/components/MergeTranscripts.d.ts.map +1 -0
  227. package/dist/components/OntologyTermAutocomplete.d.ts +25 -0
  228. package/dist/components/OntologyTermAutocomplete.d.ts.map +1 -0
  229. package/dist/components/OntologyTermMultiSelect.d.ts +12 -0
  230. package/dist/components/OntologyTermMultiSelect.d.ts.map +1 -0
  231. package/dist/components/OpenLocalFile.d.ts +15 -0
  232. package/dist/components/OpenLocalFile.d.ts.map +1 -0
  233. package/dist/components/SplitExon.d.ts +15 -0
  234. package/dist/components/SplitExon.d.ts.map +1 -0
  235. package/dist/components/ViewChangeLog.d.ts +8 -0
  236. package/dist/components/ViewChangeLog.d.ts.map +1 -0
  237. package/dist/components/ViewCheckResults.d.ts +8 -0
  238. package/dist/components/ViewCheckResults.d.ts.map +1 -0
  239. package/dist/components/index.d.ts +21 -0
  240. package/dist/components/index.d.ts.map +1 -0
  241. package/dist/extensions/annotationFromJBrowseFeature.d.ts +6 -0
  242. package/dist/extensions/annotationFromJBrowseFeature.d.ts.map +1 -0
  243. package/dist/extensions/annotationFromPileup.d.ts +3 -0
  244. package/dist/extensions/annotationFromPileup.d.ts.map +1 -0
  245. package/dist/extensions/index.d.ts +3 -0
  246. package/dist/extensions/index.d.ts.map +1 -0
  247. package/dist/index.esm.js +843 -1330
  248. package/dist/index.esm.js.map +1 -1
  249. package/dist/jbrowse-plugin-apollo.cjs.development.js +919 -1455
  250. package/dist/jbrowse-plugin-apollo.cjs.development.js.map +1 -1
  251. package/dist/jbrowse-plugin-apollo.cjs.production.min.js +1 -1
  252. package/dist/jbrowse-plugin-apollo.cjs.production.min.js.map +1 -1
  253. package/dist/jbrowse-plugin-apollo.umd.development.js +46351 -63687
  254. package/dist/jbrowse-plugin-apollo.umd.development.js.map +1 -1
  255. package/dist/jbrowse-plugin-apollo.umd.production.min.js +1 -1
  256. package/dist/jbrowse-plugin-apollo.umd.production.min.js.map +1 -1
  257. package/dist/makeDisplayComponent.d.ts +9 -0
  258. package/dist/makeDisplayComponent.d.ts.map +1 -0
  259. package/dist/menus/index.d.ts +2 -0
  260. package/dist/menus/index.d.ts.map +1 -0
  261. package/dist/menus/topLevelMenu.d.ts +3 -0
  262. package/dist/menus/topLevelMenu.d.ts.map +1 -0
  263. package/dist/menus/topLevelMenuAdmin.d.ts +3 -0
  264. package/dist/menus/topLevelMenuAdmin.d.ts.map +1 -0
  265. package/dist/session/index.d.ts +2 -0
  266. package/dist/session/index.d.ts.map +1 -0
  267. package/dist/types.d.ts +10 -0
  268. package/dist/types.d.ts.map +1 -0
  269. package/dist/util/annotationFeatureUtils.d.ts +7 -0
  270. package/dist/util/annotationFeatureUtils.d.ts.map +1 -0
  271. package/dist/util/copyToClipboard.d.ts +2 -0
  272. package/dist/util/copyToClipboard.d.ts.map +1 -0
  273. package/dist/util/glyphUtils.d.ts +31 -0
  274. package/dist/util/glyphUtils.d.ts.map +1 -0
  275. package/dist/util/index.d.ts +10 -0
  276. package/dist/util/index.d.ts.map +1 -0
  277. package/dist/util/loadAssemblyIntoClient.d.ts +5 -0
  278. package/dist/util/loadAssemblyIntoClient.d.ts.map +1 -0
  279. package/dist/util/mouseEventsUtils.d.ts +25 -0
  280. package/dist/util/mouseEventsUtils.d.ts.map +1 -0
  281. package/package.json +48 -25
  282. package/src/ApolloInternetAccount/components/AuthTypeSelector.tsx +7 -2
  283. package/src/ApolloInternetAccount/components/LoginButtons.tsx +1 -1
  284. package/src/ApolloInternetAccount/configSchema.ts +1 -1
  285. package/src/ApolloInternetAccount/model.ts +13 -6
  286. package/src/ApolloJobModel.ts +3 -3
  287. package/src/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.ts +2 -2
  288. package/src/ApolloSequenceAdapter/ApolloSequenceAdapter.ts +2 -2
  289. package/src/ApolloTextSearchAdapter/ApolloTextSearchAdapter.ts +28 -5
  290. package/src/BackendDrivers/BackendDriver.ts +8 -8
  291. package/src/BackendDrivers/CollaborationServerDriver.ts +6 -6
  292. package/src/BackendDrivers/DesktopFileDriver.ts +4 -4
  293. package/src/BackendDrivers/InMemoryFileDriver.ts +5 -8
  294. package/src/ChangeManager.ts +8 -3
  295. package/src/FeatureDetailsWidget/ApolloFeatureDetailsWidget.tsx +3 -3
  296. package/src/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.tsx +7 -7
  297. package/src/FeatureDetailsWidget/AttributeKey.tsx +1 -1
  298. package/src/FeatureDetailsWidget/AttributeKeySelector.tsx +1 -1
  299. package/src/FeatureDetailsWidget/Attributes.tsx +4 -4
  300. package/src/FeatureDetailsWidget/BasicInformation.tsx +3 -3
  301. package/src/FeatureDetailsWidget/DefaultAttributeEditor.tsx +1 -1
  302. package/src/FeatureDetailsWidget/FeatureDetailsNavigation.tsx +2 -2
  303. package/src/FeatureDetailsWidget/Sequence.tsx +3 -3
  304. package/src/FeatureDetailsWidget/TranscriptSequence.tsx +2 -2
  305. package/src/FeatureDetailsWidget/TranscriptWidgetEditLocation.tsx +3 -6
  306. package/src/FeatureDetailsWidget/TranscriptWidgetSummary.tsx +1 -1
  307. package/src/FeatureDetailsWidget/model.ts +3 -3
  308. package/src/LinearApolloDisplay/components/CheckResultWarnings.tsx +2 -2
  309. package/src/LinearApolloDisplay/components/LinearApolloDisplay.tsx +6 -4
  310. package/src/LinearApolloDisplay/glyphs/BoxGlyph.ts +7 -7
  311. package/src/LinearApolloDisplay/glyphs/GeneGlyph.ts +56 -30
  312. package/src/LinearApolloDisplay/glyphs/GenericChildGlyph.ts +6 -6
  313. package/src/LinearApolloDisplay/glyphs/Glyph.ts +7 -7
  314. package/src/LinearApolloDisplay/glyphs/util.ts +2 -2
  315. package/src/LinearApolloDisplay/stateModel/base.ts +17 -8
  316. package/src/LinearApolloDisplay/stateModel/index.ts +2 -2
  317. package/src/LinearApolloDisplay/stateModel/layouts.ts +4 -4
  318. package/src/LinearApolloDisplay/stateModel/mouseEvents.ts +6 -6
  319. package/src/LinearApolloDisplay/stateModel/rendering.ts +3 -3
  320. package/src/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.tsx +4 -2
  321. package/src/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.ts +4 -4
  322. package/src/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.ts +3 -3
  323. package/src/LinearApolloReferenceSequenceDisplay/stateModel/base.ts +11 -8
  324. package/src/LinearApolloReferenceSequenceDisplay/stateModel/index.ts +2 -2
  325. package/src/LinearApolloReferenceSequenceDisplay/stateModel/rendering.ts +2 -2
  326. package/src/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.tsx +17 -9
  327. package/src/LinearApolloSixFrameDisplay/components/TrackLines.tsx +1 -1
  328. package/src/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.ts +36 -23
  329. package/src/LinearApolloSixFrameDisplay/glyphs/Glyph.ts +6 -6
  330. package/src/LinearApolloSixFrameDisplay/stateModel/base.ts +17 -8
  331. package/src/LinearApolloSixFrameDisplay/stateModel/index.ts +2 -2
  332. package/src/LinearApolloSixFrameDisplay/stateModel/layouts.ts +12 -8
  333. package/src/LinearApolloSixFrameDisplay/stateModel/mouseEvents.ts +11 -10
  334. package/src/LinearApolloSixFrameDisplay/stateModel/rendering.ts +3 -3
  335. package/src/OntologyManager/OntologyStore/fulltext.test.ts +1 -1
  336. package/src/OntologyManager/OntologyStore/fulltext.ts +11 -4
  337. package/src/OntologyManager/OntologyStore/index.test.ts +3 -0
  338. package/src/OntologyManager/OntologyStore/indexeddb-schema.ts +6 -6
  339. package/src/OntologyManager/OntologyStore/indexeddb-storage.ts +2 -1
  340. package/src/OntologyManager/index.ts +4 -4
  341. package/src/OntologyManager/util.ts +1 -1
  342. package/src/TabularEditor/HybridGrid/ChangeHandling.ts +2 -2
  343. package/src/TabularEditor/HybridGrid/Feature.tsx +6 -6
  344. package/src/TabularEditor/HybridGrid/FeatureAttributes.tsx +2 -2
  345. package/src/TabularEditor/HybridGrid/Highlight.tsx +1 -1
  346. package/src/TabularEditor/HybridGrid/HybridGrid.tsx +2 -2
  347. package/src/TabularEditor/HybridGrid/NumberCell.tsx +1 -1
  348. package/src/TabularEditor/HybridGrid/ToolBar.tsx +3 -2
  349. package/src/TabularEditor/HybridGrid/featureContextMenuItems.ts +26 -4
  350. package/src/TabularEditor/TabularEditorPane.tsx +1 -1
  351. package/src/TabularEditor/model.ts +2 -2
  352. package/src/TabularEditor/types.ts +2 -2
  353. package/src/components/AddAssembly.tsx +61 -42
  354. package/src/components/AddAssemblyAliases.tsx +5 -5
  355. package/src/components/AddChildFeature.tsx +3 -3
  356. package/src/components/AddFeature.tsx +4 -4
  357. package/src/components/AddRefSeqAliases.tsx +7 -7
  358. package/src/components/CopyFeature.tsx +8 -8
  359. package/src/components/CreateApolloAnnotation.tsx +5 -5
  360. package/src/components/DeleteAssembly.tsx +8 -8
  361. package/src/components/DeleteFeature.tsx +4 -4
  362. package/src/components/Dialog.tsx +1 -1
  363. package/src/components/DownloadGFF3.tsx +8 -8
  364. package/src/components/DuplicateTranscript.tsx +132 -0
  365. package/src/components/FilterFeatures.tsx +1 -1
  366. package/src/components/FilterTranscripts.tsx +1 -1
  367. package/src/components/ImportFeatures.tsx +51 -33
  368. package/src/components/LogOut.tsx +4 -4
  369. package/src/components/ManageChecks.tsx +8 -8
  370. package/src/components/ManageUsers.tsx +18 -26
  371. package/src/components/MergeExons.tsx +4 -4
  372. package/src/components/MergeTranscripts.tsx +4 -4
  373. package/src/components/OntologyTermAutocomplete.tsx +14 -4
  374. package/src/components/OntologyTermMultiSelect.tsx +12 -5
  375. package/src/components/OpenLocalFile.tsx +2 -2
  376. package/src/components/SplitExon.tsx +6 -6
  377. package/src/components/ViewChangeLog.tsx +8 -8
  378. package/src/components/ViewCheckResults.tsx +4 -4
  379. package/src/components/index.ts +1 -0
  380. package/src/config.ts +1 -1
  381. package/src/extensions/annotationFromJBrowseFeature.ts +29 -24
  382. package/src/extensions/annotationFromPileup.ts +8 -6
  383. package/src/index.ts +25 -1
  384. package/src/makeDisplayComponent.tsx +8 -5
  385. package/src/menus/topLevelMenu.ts +4 -4
  386. package/src/menus/topLevelMenuAdmin.ts +4 -4
  387. package/src/session/ClientDataStore.ts +20 -15
  388. package/src/session/session.ts +30 -19
  389. package/src/types.ts +10 -4
  390. package/src/util/annotationFeatureUtils.ts +1 -1
  391. package/src/util/displayUtils.ts +3 -3
  392. package/src/util/glyphUtils.ts +10 -10
  393. package/src/util/index.ts +4 -4
  394. package/src/util/loadAssemblyIntoClient.ts +4 -4
  395. package/src/util/mouseEventsUtils.ts +2 -2
@@ -0,0 +1,8 @@
1
+ import type { ApolloSessionModel } from '../session';
2
+ interface DeleteAssemblyProps {
3
+ session: ApolloSessionModel;
4
+ handleClose(): void;
5
+ }
6
+ export declare function LogOut({ handleClose, session }: DeleteAssemblyProps): import("react/jsx-runtime").JSX.Element;
7
+ export {};
8
+ //# sourceMappingURL=LogOut.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"LogOut.d.ts","sourceRoot":"","sources":["../../src/components/LogOut.tsx"],"names":[],"mappings":"AAcA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAKpD,UAAU,mBAAmB;IAC3B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;CACpB;AAED,wBAAgB,MAAM,CAAC,EAAE,WAAW,EAAE,OAAO,EAAE,EAAE,mBAAmB,2CAkFnE"}
@@ -0,0 +1,8 @@
1
+ import type { ApolloSessionModel } from '../session';
2
+ interface ManageChecksProps {
3
+ session: ApolloSessionModel;
4
+ handleClose(): void;
5
+ }
6
+ export declare function ManageChecks({ handleClose, session }: ManageChecksProps): import("react/jsx-runtime").JSX.Element;
7
+ export {};
8
+ //# sourceMappingURL=ManageChecks.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"ManageChecks.d.ts","sourceRoot":"","sources":["../../src/components/ManageChecks.tsx"],"names":[],"mappings":"AA6BA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAMpD,UAAU,iBAAiB;IACzB,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;CACpB;AAaD,wBAAgB,YAAY,CAAC,EAAE,WAAW,EAAE,OAAO,EAAE,EAAE,iBAAiB,2CAqOvE"}
@@ -0,0 +1,10 @@
1
+ import type { ChangeManager } from '../ChangeManager';
2
+ import type { ApolloSessionModel } from '../session';
3
+ interface ManageUsersProps {
4
+ session: ApolloSessionModel;
5
+ handleClose(): void;
6
+ changeManager: ChangeManager;
7
+ }
8
+ export declare function ManageUsers({ changeManager, handleClose, session, }: ManageUsersProps): import("react/jsx-runtime").JSX.Element;
9
+ export {};
10
+ //# sourceMappingURL=ManageUsers.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"ManageUsers.d.ts","sourceRoot":"","sources":["../../src/components/ManageUsers.tsx"],"names":[],"mappings":"AAgCA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAapD,UAAU,gBAAgB;IACxB,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,aAAa,CAAA;CAC7B;AAED,wBAAgB,WAAW,CAAC,EAC1B,aAAa,EACb,WAAW,EACX,OAAO,GACR,EAAE,gBAAgB,2CAyLlB"}
@@ -0,0 +1,15 @@
1
+ import type { AnnotationFeature } from '@apollo-annotation/mst';
2
+ import type { ChangeManager } from '../ChangeManager';
3
+ import type { ApolloSessionModel } from '../session';
4
+ interface MergeExonsProps {
5
+ session: ApolloSessionModel;
6
+ handleClose(): void;
7
+ sourceFeature: AnnotationFeature;
8
+ sourceAssemblyId: string;
9
+ changeManager: ChangeManager;
10
+ selectedFeature?: AnnotationFeature;
11
+ setSelectedFeature(feature?: AnnotationFeature): void;
12
+ }
13
+ export declare function MergeExons({ changeManager, handleClose, selectedFeature, setSelectedFeature, sourceAssemblyId, sourceFeature, }: MergeExonsProps): import("react/jsx-runtime").JSX.Element;
14
+ export {};
15
+ //# sourceMappingURL=MergeExons.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"MergeExons.d.ts","sourceRoot":"","sources":["../../src/components/MergeExons.tsx"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAiB/D,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAIpD,UAAU,eAAe;IACvB,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,iBAAiB,CAAA;IAChC,gBAAgB,EAAE,MAAM,CAAA;IACxB,aAAa,EAAE,aAAa,CAAA;IAC5B,eAAe,CAAC,EAAE,iBAAiB,CAAA;IACnC,kBAAkB,CAAC,OAAO,CAAC,EAAE,iBAAiB,GAAG,IAAI,CAAA;CACtD;AA2DD,wBAAgB,UAAU,CAAC,EACzB,aAAa,EACb,WAAW,EACX,eAAe,EACf,kBAAkB,EAClB,gBAAgB,EAChB,aAAa,GACd,EAAE,eAAe,2CA8FjB"}
@@ -0,0 +1,15 @@
1
+ import type { AnnotationFeature } from '@apollo-annotation/mst';
2
+ import type { ChangeManager } from '../ChangeManager';
3
+ import type { ApolloSessionModel } from '../session';
4
+ interface MergeTranscriptsProps {
5
+ session: ApolloSessionModel;
6
+ handleClose(): void;
7
+ sourceFeature: AnnotationFeature;
8
+ sourceAssemblyId: string;
9
+ changeManager: ChangeManager;
10
+ selectedFeature?: AnnotationFeature;
11
+ setSelectedFeature(feature?: AnnotationFeature): void;
12
+ }
13
+ export declare function MergeTranscripts({ changeManager, handleClose, selectedFeature, session, setSelectedFeature, sourceAssemblyId, sourceFeature, }: MergeTranscriptsProps): import("react/jsx-runtime").JSX.Element;
14
+ export {};
15
+ //# sourceMappingURL=MergeTranscripts.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"MergeTranscripts.d.ts","sourceRoot":"","sources":["../../src/components/MergeTranscripts.tsx"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAiB/D,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAIpD,UAAU,qBAAqB;IAC7B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,iBAAiB,CAAA;IAChC,gBAAgB,EAAE,MAAM,CAAA;IACxB,aAAa,EAAE,aAAa,CAAA;IAC5B,eAAe,CAAC,EAAE,iBAAiB,CAAA;IACnC,kBAAkB,CAAC,OAAO,CAAC,EAAE,iBAAiB,GAAG,IAAI,CAAA;CACtD;AA0CD,wBAAgB,gBAAgB,CAAC,EAC/B,aAAa,EACb,WAAW,EACX,eAAe,EACf,OAAO,EACP,kBAAkB,EAClB,gBAAgB,EAChB,aAAa,GACd,EAAE,qBAAqB,2CAoGvB"}
@@ -0,0 +1,25 @@
1
+ import { type AutocompleteRenderInputParams } from '@mui/material';
2
+ import React from 'react';
3
+ import { type OntologyTerm } from '../OntologyManager';
4
+ import type OntologyStore from '../OntologyManager/OntologyStore';
5
+ import type { ApolloSessionModel } from '../session';
6
+ interface OntologyTermAutocompleteProps {
7
+ session: ApolloSessionModel;
8
+ ontologyName: string;
9
+ ontologyVersion?: string;
10
+ value: string;
11
+ error?: boolean;
12
+ filterTerms?: (term: OntologyTerm) => boolean;
13
+ fetchValidTerms?: (ontologyStore: OntologyStore, signal: AbortSignal) => Promise<OntologyTerm[] | undefined>;
14
+ style?: React.CSSProperties;
15
+ renderInput?: (params: AutocompleteRenderInputParams & {
16
+ error?: boolean;
17
+ errorMessage?: string;
18
+ }) => React.ReactNode;
19
+ onChange: (oldValue: string, newValue: string | null | undefined) => void;
20
+ /** if true, include deprecated/obsolete terms */
21
+ includeDeprecated?: boolean;
22
+ }
23
+ export declare function OntologyTermAutocomplete({ fetchValidTerms, filterTerms: filterTermsProp, includeDeprecated, onChange, ontologyName, ontologyVersion, renderInput, session, style, value: valueString, }: OntologyTermAutocompleteProps): import("react/jsx-runtime").JSX.Element;
24
+ export {};
25
+ //# sourceMappingURL=OntologyTermAutocomplete.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"OntologyTermAutocomplete.d.ts","sourceRoot":"","sources":["../../src/components/OntologyTermAutocomplete.tsx"],"names":[],"mappings":"AAIA,OAAO,EAEL,KAAK,6BAA6B,EAEnC,MAAM,eAAe,CAAA;AACtB,OAAO,KAA2C,MAAM,OAAO,CAAA;AAE/D,OAAO,EAAE,KAAK,YAAY,EAAgB,MAAM,oBAAoB,CAAA;AACpE,OAAO,KAAK,aAAa,MAAM,kCAAkC,CAAA;AACjE,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAEpD,UAAU,6BAA6B;IACrC,OAAO,EAAE,kBAAkB,CAAA;IAC3B,YAAY,EAAE,MAAM,CAAA;IACpB,eAAe,CAAC,EAAE,MAAM,CAAA;IACxB,KAAK,EAAE,MAAM,CAAA;IACb,KAAK,CAAC,EAAE,OAAO,CAAA;IACf,WAAW,CAAC,EAAE,CAAC,IAAI,EAAE,YAAY,KAAK,OAAO,CAAA;IAC7C,eAAe,CAAC,EAAE,CAChB,aAAa,EAAE,aAAa,EAC5B,MAAM,EAAE,WAAW,KAChB,OAAO,CAAC,YAAY,EAAE,GAAG,SAAS,CAAC,CAAA;IACxC,KAAK,CAAC,EAAE,KAAK,CAAC,aAAa,CAAA;IAC3B,WAAW,CAAC,EAAE,CACZ,MAAM,EAAE,6BAA6B,GAAG;QACtC,KAAK,CAAC,EAAE,OAAO,CAAA;QACf,YAAY,CAAC,EAAE,MAAM,CAAA;KACtB,KACE,KAAK,CAAC,SAAS,CAAA;IACpB,QAAQ,EAAE,CAAC,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,KAAK,IAAI,CAAA;IACzE,iDAAiD;IACjD,iBAAiB,CAAC,EAAE,OAAO,CAAA;CAC5B;AAED,wBAAgB,wBAAwB,CAAC,EACvC,eAAe,EACf,WAAW,EAAE,eAAe,EAC5B,iBAAiB,EACjB,QAAQ,EACR,YAAY,EACZ,eAAe,EACf,WAAW,EACX,OAAO,EACP,KAAK,EACL,KAAK,EAAE,WAAW,GACnB,EAAE,6BAA6B,2CAqJ/B"}
@@ -0,0 +1,12 @@
1
+ import type { ApolloSessionModel } from '../session';
2
+ export declare function OntologyTermMultiSelect({ includeDeprecated, onChange, ontologyName, ontologyVersion, session, value: initialValue, label, }: {
3
+ session: ApolloSessionModel;
4
+ value: string[];
5
+ ontologyName: string;
6
+ ontologyVersion?: string;
7
+ /** if true, include deprecated/obsolete terms */
8
+ includeDeprecated?: boolean;
9
+ onChange(newValue: string[]): void;
10
+ label?: string;
11
+ }): import("react/jsx-runtime").JSX.Element | null;
12
+ //# sourceMappingURL=OntologyTermMultiSelect.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"OntologyTermMultiSelect.d.ts","sourceRoot":"","sources":["../../src/components/OntologyTermMultiSelect.tsx"],"names":[],"mappings":"AA2BA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAuFpD,wBAAgB,uBAAuB,CAAC,EACtC,iBAAiB,EACjB,QAAQ,EACR,YAAY,EACZ,eAAe,EACf,OAAO,EACP,KAAK,EAAE,YAAY,EACnB,KAAK,GACN,EAAE;IACD,OAAO,EAAE,kBAAkB,CAAA;IAC3B,KAAK,EAAE,MAAM,EAAE,CAAA;IACf,YAAY,EAAE,MAAM,CAAA;IACpB,eAAe,CAAC,EAAE,MAAM,CAAA;IACxB,iDAAiD;IACjD,iBAAiB,CAAC,EAAE,OAAO,CAAA;IAC3B,QAAQ,CAAC,QAAQ,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;IAClC,KAAK,CAAC,EAAE,MAAM,CAAA;CACf,kDAiKA"}
@@ -0,0 +1,15 @@
1
+ import type { InMemoryFileDriver } from '../BackendDrivers';
2
+ import type { ApolloSessionModel } from '../session';
3
+ interface OpenLocalFileProps {
4
+ session: ApolloSessionModel;
5
+ handleClose(): void;
6
+ inMemoryFileDriver: InMemoryFileDriver;
7
+ }
8
+ export interface RefSeqInterface {
9
+ refName: string;
10
+ uniqueId: string;
11
+ aliases?: string[];
12
+ }
13
+ export declare function OpenLocalFile({ handleClose, session }: OpenLocalFileProps): import("react/jsx-runtime").JSX.Element;
14
+ export {};
15
+ //# sourceMappingURL=OpenLocalFile.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"OpenLocalFile.d.ts","sourceRoot":"","sources":["../../src/components/OpenLocalFile.tsx"],"names":[],"mappings":"AAkBA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,mBAAmB,CAAA;AAC3D,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAKpD,UAAU,kBAAkB;IAC1B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,kBAAkB,EAAE,kBAAkB,CAAA;CACvC;AAED,MAAM,WAAW,eAAe;IAC9B,OAAO,EAAE,MAAM,CAAA;IACf,QAAQ,EAAE,MAAM,CAAA;IAChB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAA;CACnB;AAED,wBAAgB,aAAa,CAAC,EAAE,WAAW,EAAE,OAAO,EAAE,EAAE,kBAAkB,2CAwJzE"}
@@ -0,0 +1,15 @@
1
+ import type { AnnotationFeature } from '@apollo-annotation/mst';
2
+ import type { ChangeManager } from '../ChangeManager';
3
+ import type { ApolloSessionModel } from '../session';
4
+ interface SplitExonProps {
5
+ session: ApolloSessionModel;
6
+ handleClose(): void;
7
+ sourceFeature: AnnotationFeature;
8
+ sourceAssemblyId: string;
9
+ changeManager: ChangeManager;
10
+ selectedFeature?: AnnotationFeature;
11
+ setSelectedFeature(feature?: AnnotationFeature): void;
12
+ }
13
+ export declare function SplitExon({ changeManager, handleClose, selectedFeature, setSelectedFeature, sourceAssemblyId, sourceFeature, }: SplitExonProps): import("react/jsx-runtime").JSX.Element;
14
+ export {};
15
+ //# sourceMappingURL=SplitExon.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"SplitExon.d.ts","sourceRoot":"","sources":["../../src/components/SplitExon.tsx"],"names":[],"mappings":"AAEA,OAAO,KAAK,EACV,iBAAiB,EAElB,MAAM,wBAAwB,CAAA;AAY/B,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAIpD,UAAU,cAAc;IACtB,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,iBAAiB,CAAA;IAChC,gBAAgB,EAAE,MAAM,CAAA;IACxB,aAAa,EAAE,aAAa,CAAA;IAC5B,eAAe,CAAC,EAAE,iBAAiB,CAAA;IACnC,kBAAkB,CAAC,OAAO,CAAC,EAAE,iBAAiB,GAAG,IAAI,CAAA;CACtD;AA2BD,wBAAgB,SAAS,CAAC,EACxB,aAAa,EACb,WAAW,EACX,eAAe,EACf,kBAAkB,EAClB,gBAAgB,EAChB,aAAa,GACd,EAAE,cAAc,2CAqEhB"}
@@ -0,0 +1,8 @@
1
+ import type { ApolloSessionModel } from '../session';
2
+ interface ViewChangeLogProps {
3
+ session: ApolloSessionModel;
4
+ handleClose(): void;
5
+ }
6
+ export declare function ViewChangeLog({ handleClose, session }: ViewChangeLogProps): import("react/jsx-runtime").JSX.Element;
7
+ export {};
8
+ //# sourceMappingURL=ViewChangeLog.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"ViewChangeLog.d.ts","sourceRoot":"","sources":["../../src/components/ViewChangeLog.tsx"],"names":[],"mappings":"AAgCA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAMpD,UAAU,kBAAkB;IAC1B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;CACpB;AAYD,wBAAgB,aAAa,CAAC,EAAE,WAAW,EAAE,OAAO,EAAE,EAAE,kBAAkB,2CA+IzE"}
@@ -0,0 +1,8 @@
1
+ import type { ApolloSessionModel } from '../session';
2
+ interface ViewCheckResultsProps {
3
+ session: ApolloSessionModel;
4
+ handleClose(): void;
5
+ }
6
+ export declare function ViewCheckResults({ handleClose, session, }: ViewCheckResultsProps): import("react/jsx-runtime").JSX.Element;
7
+ export {};
8
+ //# sourceMappingURL=ViewCheckResults.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"ViewCheckResults.d.ts","sourceRoot":"","sources":["../../src/components/ViewCheckResults.tsx"],"names":[],"mappings":"AAyBA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAMpD,UAAU,qBAAqB;IAC7B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;CACpB;AAED,wBAAgB,gBAAgB,CAAC,EAC/B,WAAW,EACX,OAAO,GACR,EAAE,qBAAqB,2CAkHvB"}
@@ -0,0 +1,21 @@
1
+ export * from './AddAssembly';
2
+ export * from './AddAssemblyAliases';
3
+ export * from './AddChildFeature';
4
+ export * from './AddFeature';
5
+ export * from './CopyFeature';
6
+ export * from './DeleteAssembly';
7
+ export * from './DeleteFeature';
8
+ export * from './DownloadGFF3';
9
+ export * from './ImportFeatures';
10
+ export * from './LogOut';
11
+ export * from './ManageChecks';
12
+ export * from './ManageUsers';
13
+ export * from './MergeExons';
14
+ export * from './MergeTranscripts';
15
+ export * from './OpenLocalFile';
16
+ export * from './ViewChangeLog';
17
+ export * from './AddRefSeqAliases';
18
+ export * from './ViewCheckResults';
19
+ export * from './SplitExon';
20
+ export * from './DuplicateTranscript';
21
+ //# sourceMappingURL=index.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/components/index.ts"],"names":[],"mappings":"AAAA,cAAc,eAAe,CAAA;AAC7B,cAAc,sBAAsB,CAAA;AACpC,cAAc,mBAAmB,CAAA;AACjC,cAAc,cAAc,CAAA;AAC5B,cAAc,eAAe,CAAA;AAC7B,cAAc,kBAAkB,CAAA;AAChC,cAAc,iBAAiB,CAAA;AAC/B,cAAc,gBAAgB,CAAA;AAC9B,cAAc,kBAAkB,CAAA;AAChC,cAAc,UAAU,CAAA;AACxB,cAAc,gBAAgB,CAAA;AAC9B,cAAc,eAAe,CAAA;AAC7B,cAAc,cAAc,CAAA;AAC5B,cAAc,oBAAoB,CAAA;AAClC,cAAc,iBAAiB,CAAA;AAC/B,cAAc,iBAAiB,CAAA;AAC/B,cAAc,oBAAoB,CAAA;AAClC,cAAc,oBAAoB,CAAA;AAClC,cAAc,aAAa,CAAA;AAC3B,cAAc,uBAAuB,CAAA"}
@@ -0,0 +1,6 @@
1
+ import type { AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
2
+ import type { PluggableElementType } from '@jbrowse/core/pluggableElementTypes';
3
+ import type { Feature } from '@jbrowse/core/util/simpleFeature';
4
+ export declare function jbrowseFeatureToAnnotationFeature(feature: Feature, refSeqId: string): AnnotationFeatureSnapshot;
5
+ export declare function annotationFromJBrowseFeature(pluggableElement: PluggableElementType): PluggableElementType;
6
+ //# sourceMappingURL=annotationFromJBrowseFeature.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"annotationFromJBrowseFeature.d.ts","sourceRoot":"","sources":["../../src/extensions/annotationFromJBrowseFeature.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,yBAAyB,EAAE,MAAM,wBAAwB,CAAA;AAIvE,OAAO,KAAK,EAAE,oBAAoB,EAAE,MAAM,qCAAqC,CAAA;AAO/E,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,kCAAkC,CAAA;AAuC/D,wBAAgB,iCAAiC,CAC/C,OAAO,EAAE,OAAO,EAChB,QAAQ,EAAE,MAAM,GACf,yBAAyB,CAE3B;AAyBD,wBAAgB,4BAA4B,CAC1C,gBAAgB,EAAE,oBAAoB,wBA6FvC"}
@@ -0,0 +1,3 @@
1
+ import type { PluggableElementType } from '@jbrowse/core/pluggableElementTypes';
2
+ export declare function annotationFromPileup(pluggableElement: PluggableElementType): PluggableElementType;
3
+ //# sourceMappingURL=annotationFromPileup.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"annotationFromPileup.d.ts","sourceRoot":"","sources":["../../src/extensions/annotationFromPileup.ts"],"names":[],"mappings":"AAOA,OAAO,KAAK,EAEV,oBAAoB,EACrB,MAAM,qCAAqC,CAAA;AAwB5C,wBAAgB,oBAAoB,CAAC,gBAAgB,EAAE,oBAAoB,wBAwL1E"}
@@ -0,0 +1,3 @@
1
+ export * from './annotationFromPileup';
2
+ export * from './annotationFromJBrowseFeature';
3
+ //# sourceMappingURL=index.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/extensions/index.ts"],"names":[],"mappings":"AAAA,cAAc,wBAAwB,CAAA;AACtC,cAAc,gCAAgC,CAAA"}