xml_jats_resolver 0.1.0 → 0.2.0

data/lib/dtd/atypon/3.0.5/dtd/atypon-archivecustom-classes3.ent

@@ -0,0 +1,178 @@
+<!-- ============================================================= -->
+<!--  MODULE:    Journal Archiving DTD Customize Classes Module    -->
+<!--  VERSION:   3.0                                             -->
+<!--  DATE:      Apr 2009                                          -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!--                    PUBLIC DOCUMENT TYPE DEFINITION            -->
+<!--                        TYPICAL INVOCATION                     -->
+<!--
+"-//Atypon//DTD Atypon Systems Archival NLM DTD Customize Classes Module v3.0.5 20110520//EN"
+Delivered as file "atypon-archivecustom-classes3.ent"              -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!-- SYSTEM:     Journal Archiving and Interchange DTD of the      -->
+<!--             Archiving and Interchange DTD Suite               -->
+<!--                                                               -->
+<!-- PURPOSE:    To declare the Parameter Entities (PEs) used to   -->
+<!--             over-ride the named element classes               -->
+<!--                                                               -->
+<!--             Note: Since PEs must be declared before they      -->
+<!--             are used, this module must be called before the   -->
+<!--             content modules that declare elements, and before -->
+<!--             the default classes module.                       -->
+<!--                                                               -->
+<!-- CONTAINS:   1) PEs for changing the contents of the default   -->
+<!--                element classes                                -->
+<!--                                                               -->
+<!-- CREATED FOR:                                                  -->
+<!--             Digital Archive of Journal Articles               -->
+<!--             National Center for Biotechnology Information     -->
+<!--                (NCBI)                                         -->
+<!--             National Library of Medicine (NLM)                -->
+<!--                                                               -->
+<!-- ORIGINAL CREATION DATE:                                       -->
+<!--             August 2004                                       -->
+<!--                                                               -->
+<!-- CREATED BY: Deborah Lapeyre (Mulberry Technologies, Inc.)     -->
+<!--             B. Tommie Usdin (Mulberry Technologies, Inc.)     -->
+<!--                                                               -->
+<!--             Suggestions for refinements and enhancements to   -->
+<!--             this DTD should be sent in email to:              -->
+<!--                 archive-dtd@ncbi.nlm.nih.gov                  -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    DTD VERSION/CHANGE HISTORY                 -->
+<!-- ============================================================= -->
+<!--
+
+Version  Reason/Occasion                   (who) vx.x (yyyy-mm-dd)
+
+     =============================================================
+     Version 3.0                       (DAL/BTU) v3.0 (2007-10-31)
+     
+     Version 3.0 is the first non-backward-compatible release.
+     In addition to the usual incremental changes, some
+     elements and attributes have been renamed and/or remodeled
+     to better meet user needs and to increase tag set consistency.
+     All module change histories are available through the Tag Suite 
+     web site at http://dtd.nlm.nih.gov. 
+
+     Details on version 3.0 are available at 
+           http://dtd.nlm.nih.gov/3.0.
+  
+  1. Updated public identifier to "v3.0 20080202//EN"              -->
+
+
+<!-- ============================================================= -->
+<!--                    METADATA CLASSES (articlemeta.ent)         -->
+<!-- ============================================================= -->
+
+
+<!--                    CITATION CLASS ELEMENTS                    -->
+<!--                    Reference to an external document, as used 
+                        within, for example, the text of a 
+                        paragraph                                  -->
+<!ENTITY % citation.class   
+                        "element-citation | mixed-citation | 
+                         nlm-citation"                               >
+                               
+
+<!--                    CONTRIBUTOR INFORMATION CLASS              -->
+<!--                    Metadata about a contributor               
+                        Added <fn>                                 -->
+<!ENTITY % contrib-info.class
+                        "address | aff | author-comment | bio | 
+                         email |  etal | ext-link | fn | 
+                         on-behalf-of | role | uri | xref"           >
+
+
+<!-- ============================================================= -->
+<!--                    CITATION CLASSES (references.ent)          -->
+<!-- ============================================================= -->
+
+
+<!ENTITY % citation-additions.class 
+                        "string-date"                                >
+
+
+<!-- ============================================================= -->
+<!--                    DEFAULT CLASSES (default-classes3.ent)     -->
+<!-- ============================================================= -->
+                        
+                        
+<!--                    CONTRIBUTOR INFORMATION FOR REFERENCES     -->
+<!--                    The additions and alternatives to a person's
+                        name that may be used inside the element
+                        <person-group>                             -->
+<!ENTITY % person-group-info.class
+                        "aff | etal | role"                          >
+
+
+<!--                    TABLE CLASS ELEMENTS                       -->
+<!--                    Elements that will be used to contain the
+                        rows and columns inside the Table Wrapper 
+                        element <table-wrap>.  The following elements 
+                        can be set up for inclusion:
+                          XHTML Table Model    table               -->
+<!ENTITY % table.class  "table | oasis:table"                        >
+ 
+
+<!--                    ALTERNATIVES DISPLAY CLASS ELEMENTS        -->
+<!--                    Display elements that can be alternatives to
+                        each  other inside an alternatives element.
+                                                                   -->
+<!ENTITY % alternatives-display.class
+                        "array | chem-struct | graphic |
+                         inline-graphic |
+                         inline-supplementary-material |
+                         media | textual-form | preformat |
+                         private-char | supplementary-material |
+                         %table.class;"                              >
+
+<!-- ============================================================= -->
+<!--                    PRESENTATION INFO CLASSES                  -->
+<!-- ============================================================= -->
+                        
+                        
+<!--                    X-GENERATED PUNCTUATION CLASS              -->
+<!--                    Class containing a single element that will
+                        hold generated punctuation or other 
+                        generatable text, for example, the commas or
+                        semicolons between keywords.               -->
+<!ENTITY % x.class      "x"                                          >
+                         
+
+<!-- ============================================================= -->
+<!--                    STRUCTURAL ELEMENT CLASSES                 -->
+<!-- ============================================================= -->
+
+
+<!--                    REST OF PARAGRAPH CLASS                    -->
+<!--                    Information for the reader that is at the
+                        same structural level as a Paragraph.      -->
+<!ENTITY % rest-of-para.class   
+                        "ack | disp-quote | speech | statement | 
+                         verse-group"                                >
+
+
+<!-- ============================================================= -->
+<!--                    SECTION CLASS (%section.ent;)              -->
+<!-- ============================================================= -->
+
+
+<!--                    SECTION CLASS ELEMENTS                     -->
+<!--                    Information for the reader that is at the
+                        same structural level as a Section, which is
+                        a headed structure full of smaller elements
+                        such as paragraphs.                        -->
+<!ENTITY % sec.class    "sec | question"                             >
+
+
+<!-- ================== End Archiving Classes Customization ====== -->

data/lib/dtd/atypon/3.0.5/dtd/atypon-archivecustom-mixes3.ent

@@ -0,0 +1,253 @@
+<!-- ============================================================= -->
+<!--  MODULE:    Journal Archiving DTD Customize Mixes Module      -->
+<!--  VERSION:   3.0                                             -->
+<!--  DATE:      Apr 2009                                          -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!--                    PUBLIC DOCUMENT TYPE DEFINITION            -->
+<!--                        TYPICAL INVOCATION                     -->
+<!--
+"-//Atypon//DTD Atypon Systems Archival NLM DTD Customize Mixes Module v3.0.5 20110520//EN"
+Delivered as file "atypon-archivecustom-mixes3.ent"                -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!-- SYSTEM:     Journal Archiving and Interchange DTD of the      -->
+<!--             Archiving and Interchange DTD Suite               -->
+<!--                                                               -->
+<!-- PURPOSE:    Declares over-ride values for the default element -->
+<!--             mixes in the Suite. These over-rides are specific -->
+<!--             to the Journal Archiving and Interchange DTD.     -->
+<!--                                                               -->
+<!--             Note: Since PEs must be declared before they      -->
+<!--             are used, this module must be called before the   -->
+<!--             default mixes modules (%default-mixes;)           -->
+<!--                                                               -->
+<!-- CONTAINS:   1) PEs that define the element mixes to be        -->
+<!--                over-ridden                                    -->
+<!--                                                               -->
+<!-- CREATED FOR:                                                  -->
+<!--             Digital Archive of Journal Articles               -->
+<!--             National Center for Biotechnology Information     -->
+<!--                (NCBI)                                         -->
+<!--             National Library of Medicine (NLM)                -->
+<!--                                                               -->
+<!-- ORIGINAL CREATION DATE:                                       -->
+<!--             August 2004                                       -->
+<!--                                                               -->
+<!-- CREATED BY: Deborah Lapeyre (Mulberry Technologies, Inc.)     -->
+<!--             B. Tommie Usdin (Mulberry Technologies, Inc.)     -->
+<!--                                                               -->
+<!--             Suggestions for refinements and enhancements to   -->
+<!--             this DTD should be sent in email to:              -->
+<!--                 archive-dtd@ncbi.nlm.nih.gov                  -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    DTD VERSION/CHANGE HISTORY                 -->
+<!-- ============================================================= -->
+<!--
+
+Version  Reason/Occasion                   (who) vx.x (yyyy-mm-dd)
+
+     =============================================================
+     Version 3.0                       (DAL/BTU) v3.0 (2007-10-31)
+     
+     Version 3.0 is the first non-backward-compatible release.
+     In addition to the usual incremental changes, some
+     elements and attributes have been renamed and/or remodeled
+     to better meet user needs and to increase tag set consistency.
+     All module change histories are available through the Tag Suite 
+     web site at http://dtd.nlm.nih.gov. 
+
+     Details on version 3.0 are available at 
+           http://dtd.nlm.nih.gov/3.0.
+  
+  1. Updated public identifier to "v3.0 20080202//EN"              -->
+                          
+                        
+<!-- ============================================================= -->
+<!--                    ELEMENT MIXES FOR USE IN CONTENT MODELS    -->
+<!--                    (MIXES ARE COMPOSED USING CLASSES)         -->
+<!-- ============================================================= -->
+                         
+
+<!-- ============================================================= -->
+<!--                    EXCEPTION: A MIX USED IN OTHER MIXES       -->
+<!-- ============================================================= -->
+
+
+<!--                    ALL PHRASE-LEVEL ELEMENTS                  -->
+<!--                    This Parameter Entity contains all of the
+                        phrase-level elements in the entire
+                        Archival Tag Set EXCEPT THE <break> element.
+                        MAINTENANCE NOTE: 
+                        Since this is used inside other mixes
+                        (like a class and unlike all other mixes) 
+                        all-phrase must 
+                          - be declared first in this module. 
+                          - does not start with an OR bar, as all 
+                            other inline mixes do                  -->
+<!ENTITY % all-phrase   "%address-link.class; | %article-link.class; |
+                         %appearance.class; | %emphasis.class;  |
+                         %inline-display.class; | 
+                         %inline-math.class; | %math.class; |  
+                         %phrase.class; | %simple-link.class; |
+                         %subsup.class; | %x.class;"                 >
+
+                         
+<!-- ============================================================= -->
+<!--                    TABLE ELEMENT MIXES                        -->
+<!-- ============================================================= -->
+                          
+
+<!--                    INSIDE TABLE CELL ELEMENTS                 -->
+<!--                    Mixed with #PCDATA inside a table cell, such
+                        as a <td> or <th> element in the XHTML table
+                        model, the <entry> element in the OASIS CALS
+                        table model, etc.  This PE will be used as the
+                        value of %Flow.mix;, %paracon;, etc.
+                        MAINTENANCE NOTE: Inside cell is an exception,
+                        an inline mix that does not start with an OR
+                        bar. This is because is used within the
+                        PE -%Flow.mix;, which is an inline mix
+                        defined in the course of the XHTML Table DTD,
+                        a DTD not under control of this DTD Suite. -->
+<!ENTITY % inside-cell  "%all-phrase;  | %block-math.class; |
+                         %break.class; | %chem-struct-wrap.class; | 
+                         %citation.class; | 
+                         %list.class;  | 
+                         %simple-display-noalt.class;"               >
+                         
+
+<!-- ============================================================= -->
+<!--                    BACK MATTER ELEMENT MIXES(%backmatter.ent;)-->
+<!-- ============================================================= -->
+
+
+<!--                    DOCUMENT BACK MATTER ELEMENTS              -->
+<!--                    Back Matter Elements used by a full document
+                        such as a journal article. This is an element
+                        grouping rather than a class. These 
+                        elements may also appear in the content models 
+                        of structural elements, such as back matter.
+                                                                   -->
+<!ENTITY % doc-back-matter-mix
+                        "%back.class; | %front-back.class; | 
+                         %sec.class;"                                >
+
+
+<!-- ============================================================= -->
+<!--                    PARAGRAPH-LEVEL ELEMENT MIXES              -->
+<!-- ============================================================= -->
+
+
+<!--                    PARAGRAPH-LEVEL ELEMENTS                   -->
+<!--                    Elements that may be used at the same
+                        structural level as a paragraph, for 
+                        example inside a Section
+                        Note: There a major overlap between this
+                        parameter entity and that for the elements
+                        that are at the same level as a paragraph.
+                        Inline elements appear only inside a 
+                        paragraph, but block elements such as quotes 
+                        and lists may appear either within a 
+                        paragraph or at the same level as a 
+                        paragraph. This serves a requirement in a 
+                        repository DTD, since some incoming material 
+                        will have restricted such elements to only 
+                        inside a paragraph,  some incoming material 
+                        will have restricted them to only outside a 
+                        paragraph and some may allow them in both
+                        places. Thus the DTD must allow for them to
+                        be in either or both.                      -->
+<!ENTITY % para-level   "%block-display.class; | %block-math.class; | 
+                         %just-para.class; | %list.class; | 
+                         %math.class; | %related-article.class; |
+                         %rest-of-para.class; | %x.class;"           >
+                         
+
+<!-- ============================================================= -->
+<!--                    INLINE ELEMENT MIXES                       -->
+<!-- ============================================================= -->
+
+
+<!--                    EMPHASIS MIX ELEMENTS                      -->
+<!--                    Elements that may be used inside most of the
+                        emphasis class elements                    -->
+<!ENTITY % emphasized-text  
+                        "| %all-phrase; | %break.class;"             >
+                         
+
+<!--                    JUST RENDITION                             -->
+<!--                    Only the simplest of the typographic 
+                        emphasis elements, as well as subscript and
+                        superscript.  Usually used in a model that
+                        allows #PCDATA and this restricted mixture.
+                        This mix may be stripped down to only
+                        subscript and superscript by some, more
+                        restrictive DTDs.                         
+                        MAINTENANCE NOTE:  This Parameter Entity
+                        and the related PE "rendition-plus" have
+                        been put in place to restrict the amount of
+                        variability that a person modifying the DTD
+                        through PE redefinition can achieve. Some
+                        elements have been set #PCDATA plus one PE
+                        and some have been set to #PCDATA plus the
+                        other in an effort to allow designers to
+                        modify entire groups of elements, but not
+                        to change similar models individually .    -->
+<!ENTITY % just-rendition
+                        "| %all-phrase;"                             >
+                         
+
+<!--                    RENDITION MARKUP PLUS                      -->
+<!--                    Only the simplest of the typographic 
+                        emphasis elements, as well as subscript and
+                        superscript.  Usually used in a model that
+                        allows #PCDATA and this restricted mixture.
+                        This mix may be enhanced slightly in some
+                        more permissive DTDs, and should always
+                        contain at least typographic emphasis, 
+                        subscript, and superscript.  
+                        MAINTENANCE NOTE: This Parameter Entity
+                        and the related PE "just-rendition" have
+                        been put in place to restrict the amount of
+                        variability that a person modifying the DTD
+                        through PE redefinition can achieve. Some
+                        elements have been set #PCDATA plus one PE
+                        and some have been set to #PCDATA plus the
+                        other in an effort to allow designers to
+                        modify entire groups of elements, but not
+                        to individually change similar models. 
+                        modify entire groups of elements, but not
+                        to change similar models individually .    -->
+<!ENTITY % rendition-plus                             
+                        "| %all-phrase;"                             >
+                        
+
+<!--                    SIMPLE PHRASE-LEVEL TEXTUAL ELEMENTS       -->
+<!--                    Elements that may be used almost anywhere
+                        text is used, for example, inside a title.
+                        Simple text plus inline display and math 
+                        elements.                                  -->
+<!ENTITY % simple-phrase
+                        "| %all-phrase;"                             >
+
+
+<!--                    SIMPLE TEXTUAL CONTENT                     -->
+<!--                    Elements that may be used inside elements
+                        that are really expected to be #PCDATA and
+                        not to contain any of these things.
+                        Note that in the original, this contained
+                        no math and no links, thus is was even
+                        simpler than %simple-phrase; (As of v2 2004)
+                        the two are the same.                      -->
+<!ENTITY % simple-text  "| %all-phrase;"                             >
+
+
+<!-- ================== End Archiving DTD Mixes Customization ==== -->