xml_jats_resolver 0.1.0 → 0.2.0

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Files changed (203) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +4 -0
  3. data/lib/dtd/atypon/3.0.1/dtd/XHTMLtablesetup3.ent +284 -0
  4. data/lib/dtd/atypon/3.0.1/dtd/annotation3.ent +266 -0
  5. data/lib/dtd/atypon/3.0.1/dtd/articlemeta3.ent +1368 -0
  6. data/lib/dtd/atypon/3.0.1/dtd/atypon-archivearticle3.dtd +636 -0
  7. data/lib/dtd/atypon/3.0.1/dtd/atypon-archivecustom-classes3.ent +178 -0
  8. data/lib/dtd/atypon/3.0.1/dtd/atypon-archivecustom-mixes3.ent +253 -0
  9. data/lib/dtd/atypon/3.0.1/dtd/atypon-archivecustom-models3.ent +987 -0
  10. data/lib/dtd/atypon/3.0.1/dtd/atypon-archivecustom-modules3.ent +140 -0
  11. data/lib/dtd/atypon/3.0.1/dtd/atypon-elements.ent +207 -0
  12. data/lib/dtd/atypon/3.0.1/dtd/backmatter3.ent +275 -0
  13. data/lib/dtd/atypon/3.0.1/dtd/base-test3.dtd +714 -0
  14. data/lib/dtd/atypon/3.0.1/dtd/catalog-v3.xml +618 -0
  15. data/lib/dtd/atypon/3.0.1/dtd/catalog.ent +163 -0
  16. data/lib/dtd/atypon/3.0.1/dtd/chars3.ent +365 -0
  17. data/lib/dtd/atypon/3.0.1/dtd/common3.ent +2771 -0
  18. data/lib/dtd/atypon/3.0.1/dtd/default-classes3.ent +785 -0
  19. data/lib/dtd/atypon/3.0.1/dtd/default-mixes3.ent +292 -0
  20. data/lib/dtd/atypon/3.0.1/dtd/display3.ent +799 -0
  21. data/lib/dtd/atypon/3.0.1/dtd/format3.ent +384 -0
  22. data/lib/dtd/atypon/3.0.1/dtd/funding3.ent +342 -0
  23. data/lib/dtd/atypon/3.0.1/dtd/htmltable.dtd +334 -0
  24. data/lib/dtd/atypon/3.0.1/dtd/iso8879/isobox.ent +61 -0
  25. data/lib/dtd/atypon/3.0.1/dtd/iso8879/isocyr1.ent +88 -0
  26. data/lib/dtd/atypon/3.0.1/dtd/iso8879/isocyr2.ent +47 -0
  27. data/lib/dtd/atypon/3.0.1/dtd/iso8879/isodia.ent +35 -0
  28. data/lib/dtd/atypon/3.0.1/dtd/iso8879/isolat1.ent +83 -0
  29. data/lib/dtd/atypon/3.0.1/dtd/iso8879/isolat2.ent +142 -0
  30. data/lib/dtd/atypon/3.0.1/dtd/iso8879/isonum.ent +97 -0
  31. data/lib/dtd/atypon/3.0.1/dtd/iso8879/isopub.ent +105 -0
  32. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isoamsa.ent +167 -0
  33. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isoamsb.ent +143 -0
  34. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isoamsc.ent +43 -0
  35. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isoamsn.ent +114 -0
  36. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isoamso.ent +73 -0
  37. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isoamsr.ent +204 -0
  38. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isogrk3.ent +64 -0
  39. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isomfrk.ent +75 -0
  40. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isomopf.ent +49 -0
  41. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isomscr.ent +75 -0
  42. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isotech.ent +182 -0
  43. data/lib/dtd/atypon/3.0.1/dtd/issuexml.dtd +262 -0
  44. data/lib/dtd/atypon/3.0.1/dtd/journalmeta3.ent +278 -0
  45. data/lib/dtd/atypon/3.0.1/dtd/link3.ent +301 -0
  46. data/lib/dtd/atypon/3.0.1/dtd/list3.ent +314 -0
  47. data/lib/dtd/atypon/3.0.1/dtd/math3.ent +269 -0
  48. data/lib/dtd/atypon/3.0.1/dtd/mathml/mmlalias.ent +564 -0
  49. data/lib/dtd/atypon/3.0.1/dtd/mathml/mmlextra.ent +122 -0
  50. data/lib/dtd/atypon/3.0.1/dtd/mathml2-qname-1.mod +286 -0
  51. data/lib/dtd/atypon/3.0.1/dtd/mathml2.dtd +2206 -0
  52. data/lib/dtd/atypon/3.0.1/dtd/mathmlsetup3.ent +238 -0
  53. data/lib/dtd/atypon/3.0.1/dtd/modules3.ent +414 -0
  54. data/lib/dtd/atypon/3.0.1/dtd/nlmcitation3.ent +120 -0
  55. data/lib/dtd/atypon/3.0.1/dtd/notat3.ent +164 -0
  56. data/lib/dtd/atypon/3.0.1/dtd/oasis-exchange.ent +387 -0
  57. data/lib/dtd/atypon/3.0.1/dtd/oasis-tablesetup3.ent +261 -0
  58. data/lib/dtd/atypon/3.0.1/dtd/para3.ent +354 -0
  59. data/lib/dtd/atypon/3.0.1/dtd/phrase3.ent +332 -0
  60. data/lib/dtd/atypon/3.0.1/dtd/references3.ent +758 -0
  61. data/lib/dtd/atypon/3.0.1/dtd/related-object3.ent +130 -0
  62. data/lib/dtd/atypon/3.0.1/dtd/section3.ent +198 -0
  63. data/lib/dtd/atypon/3.0.1/dtd/xhtml-inlstyle-1.mod +34 -0
  64. data/lib/dtd/atypon/3.0.1/dtd/xhtml-table-1.mod +333 -0
  65. data/lib/dtd/atypon/3.0.1/dtd/xmlchars/isogrk1.ent +70 -0
  66. data/lib/dtd/atypon/3.0.1/dtd/xmlchars/isogrk2.ent +41 -0
  67. data/lib/dtd/atypon/3.0.1/dtd/xmlchars/isogrk4.ent +66 -0
  68. data/lib/dtd/atypon/3.0.1/dtd/xmlspecchars3.ent +300 -0
  69. data/lib/dtd/atypon/3.0.4/dtd/XHTMLtablesetup3.ent +284 -0
  70. data/lib/dtd/atypon/3.0.4/dtd/annotation3.ent +266 -0
  71. data/lib/dtd/atypon/3.0.4/dtd/articlemeta3.ent +1368 -0
  72. data/lib/dtd/atypon/3.0.4/dtd/atypon-archivearticle3.dtd +645 -0
  73. data/lib/dtd/atypon/3.0.4/dtd/atypon-archivecustom-classes3.ent +178 -0
  74. data/lib/dtd/atypon/3.0.4/dtd/atypon-archivecustom-mixes3.ent +253 -0
  75. data/lib/dtd/atypon/3.0.4/dtd/atypon-archivecustom-models3.ent +996 -0
  76. data/lib/dtd/atypon/3.0.4/dtd/atypon-archivecustom-modules3.ent +140 -0
  77. data/lib/dtd/atypon/3.0.4/dtd/atypon-elements.ent +201 -0
  78. data/lib/dtd/atypon/3.0.4/dtd/backmatter3.ent +275 -0
  79. data/lib/dtd/atypon/3.0.4/dtd/base-test3.dtd +714 -0
  80. data/lib/dtd/atypon/3.0.4/dtd/catalog-v3.xml +618 -0
  81. data/lib/dtd/atypon/3.0.4/dtd/catalog.ent +98 -0
  82. data/lib/dtd/atypon/3.0.4/dtd/chars3.ent +365 -0
  83. data/lib/dtd/atypon/3.0.4/dtd/common3.ent +2771 -0
  84. data/lib/dtd/atypon/3.0.4/dtd/default-classes3.ent +785 -0
  85. data/lib/dtd/atypon/3.0.4/dtd/default-mixes3.ent +292 -0
  86. data/lib/dtd/atypon/3.0.4/dtd/display3.ent +799 -0
  87. data/lib/dtd/atypon/3.0.4/dtd/format3.ent +384 -0
  88. data/lib/dtd/atypon/3.0.4/dtd/funding3.ent +342 -0
  89. data/lib/dtd/atypon/3.0.4/dtd/htmltable.dtd +334 -0
  90. data/lib/dtd/atypon/3.0.4/dtd/iso8879/isobox.ent +61 -0
  91. data/lib/dtd/atypon/3.0.4/dtd/iso8879/isocyr1.ent +88 -0
  92. data/lib/dtd/atypon/3.0.4/dtd/iso8879/isocyr2.ent +47 -0
  93. data/lib/dtd/atypon/3.0.4/dtd/iso8879/isodia.ent +35 -0
  94. data/lib/dtd/atypon/3.0.4/dtd/iso8879/isolat1.ent +83 -0
  95. data/lib/dtd/atypon/3.0.4/dtd/iso8879/isolat2.ent +142 -0
  96. data/lib/dtd/atypon/3.0.4/dtd/iso8879/isonum.ent +97 -0
  97. data/lib/dtd/atypon/3.0.4/dtd/iso8879/isopub.ent +105 -0
  98. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isoamsa.ent +167 -0
  99. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isoamsb.ent +143 -0
  100. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isoamsc.ent +43 -0
  101. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isoamsn.ent +114 -0
  102. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isoamso.ent +73 -0
  103. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isoamsr.ent +204 -0
  104. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isogrk3.ent +64 -0
  105. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isomfrk.ent +75 -0
  106. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isomopf.ent +49 -0
  107. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isomscr.ent +75 -0
  108. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isotech.ent +182 -0
  109. data/lib/dtd/atypon/3.0.4/dtd/issuexml.dtd +266 -0
  110. data/lib/dtd/atypon/3.0.4/dtd/journalmeta3.ent +278 -0
  111. data/lib/dtd/atypon/3.0.4/dtd/link3.ent +301 -0
  112. data/lib/dtd/atypon/3.0.4/dtd/list3.ent +314 -0
  113. data/lib/dtd/atypon/3.0.4/dtd/math3.ent +269 -0
  114. data/lib/dtd/atypon/3.0.4/dtd/mathml/mmlalias.ent +564 -0
  115. data/lib/dtd/atypon/3.0.4/dtd/mathml/mmlextra.ent +122 -0
  116. data/lib/dtd/atypon/3.0.4/dtd/mathml2-qname-1.mod +286 -0
  117. data/lib/dtd/atypon/3.0.4/dtd/mathml2.dtd +2206 -0
  118. data/lib/dtd/atypon/3.0.4/dtd/mathmlsetup3.ent +238 -0
  119. data/lib/dtd/atypon/3.0.4/dtd/modules3.ent +414 -0
  120. data/lib/dtd/atypon/3.0.4/dtd/nlmcitation3.ent +120 -0
  121. data/lib/dtd/atypon/3.0.4/dtd/notat3.ent +164 -0
  122. data/lib/dtd/atypon/3.0.4/dtd/oasis-exchange.ent +387 -0
  123. data/lib/dtd/atypon/3.0.4/dtd/oasis-tablesetup3.ent +261 -0
  124. data/lib/dtd/atypon/3.0.4/dtd/para3.ent +354 -0
  125. data/lib/dtd/atypon/3.0.4/dtd/phrase3.ent +332 -0
  126. data/lib/dtd/atypon/3.0.4/dtd/references3.ent +758 -0
  127. data/lib/dtd/atypon/3.0.4/dtd/related-object3.ent +130 -0
  128. data/lib/dtd/atypon/3.0.4/dtd/section3.ent +198 -0
  129. data/lib/dtd/atypon/3.0.4/dtd/xhtml-inlstyle-1.mod +34 -0
  130. data/lib/dtd/atypon/3.0.4/dtd/xhtml-table-1.mod +333 -0
  131. data/lib/dtd/atypon/3.0.4/dtd/xmlchars/isogrk1.ent +70 -0
  132. data/lib/dtd/atypon/3.0.4/dtd/xmlchars/isogrk2.ent +41 -0
  133. data/lib/dtd/atypon/3.0.4/dtd/xmlchars/isogrk4.ent +66 -0
  134. data/lib/dtd/atypon/3.0.4/dtd/xmlspecchars3.ent +300 -0
  135. data/lib/dtd/atypon/3.0.5/dtd/XHTMLtablesetup3.ent +284 -0
  136. data/lib/dtd/atypon/3.0.5/dtd/annotation3.ent +266 -0
  137. data/lib/dtd/atypon/3.0.5/dtd/articlemeta3.ent +1368 -0
  138. data/lib/dtd/atypon/3.0.5/dtd/atypon-archivearticle3.dtd +645 -0
  139. data/lib/dtd/atypon/3.0.5/dtd/atypon-archivecustom-classes3.ent +178 -0
  140. data/lib/dtd/atypon/3.0.5/dtd/atypon-archivecustom-mixes3.ent +253 -0
  141. data/lib/dtd/atypon/3.0.5/dtd/atypon-archivecustom-models3.ent +996 -0
  142. data/lib/dtd/atypon/3.0.5/dtd/atypon-archivecustom-modules3.ent +140 -0
  143. data/lib/dtd/atypon/3.0.5/dtd/atypon-elements.ent +201 -0
  144. data/lib/dtd/atypon/3.0.5/dtd/backmatter3.ent +275 -0
  145. data/lib/dtd/atypon/3.0.5/dtd/base-test3.dtd +714 -0
  146. data/lib/dtd/atypon/3.0.5/dtd/catalog-v3.xml +618 -0
  147. data/lib/dtd/atypon/3.0.5/dtd/catalog.ent +98 -0
  148. data/lib/dtd/atypon/3.0.5/dtd/chars3.ent +365 -0
  149. data/lib/dtd/atypon/3.0.5/dtd/common3.ent +2771 -0
  150. data/lib/dtd/atypon/3.0.5/dtd/default-classes3.ent +785 -0
  151. data/lib/dtd/atypon/3.0.5/dtd/default-mixes3.ent +292 -0
  152. data/lib/dtd/atypon/3.0.5/dtd/display3.ent +799 -0
  153. data/lib/dtd/atypon/3.0.5/dtd/format3.ent +384 -0
  154. data/lib/dtd/atypon/3.0.5/dtd/funding3.ent +342 -0
  155. data/lib/dtd/atypon/3.0.5/dtd/htmltable.dtd +334 -0
  156. data/lib/dtd/atypon/3.0.5/dtd/iso8879/isobox.ent +61 -0
  157. data/lib/dtd/atypon/3.0.5/dtd/iso8879/isocyr1.ent +88 -0
  158. data/lib/dtd/atypon/3.0.5/dtd/iso8879/isocyr2.ent +47 -0
  159. data/lib/dtd/atypon/3.0.5/dtd/iso8879/isodia.ent +35 -0
  160. data/lib/dtd/atypon/3.0.5/dtd/iso8879/isolat1.ent +83 -0
  161. data/lib/dtd/atypon/3.0.5/dtd/iso8879/isolat2.ent +142 -0
  162. data/lib/dtd/atypon/3.0.5/dtd/iso8879/isonum.ent +97 -0
  163. data/lib/dtd/atypon/3.0.5/dtd/iso8879/isopub.ent +105 -0
  164. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isoamsa.ent +167 -0
  165. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isoamsb.ent +143 -0
  166. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isoamsc.ent +43 -0
  167. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isoamsn.ent +114 -0
  168. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isoamso.ent +73 -0
  169. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isoamsr.ent +204 -0
  170. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isogrk3.ent +64 -0
  171. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isomfrk.ent +75 -0
  172. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isomopf.ent +49 -0
  173. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isomscr.ent +75 -0
  174. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isotech.ent +182 -0
  175. data/lib/dtd/atypon/3.0.5/dtd/issuexml.dtd +262 -0
  176. data/lib/dtd/atypon/3.0.5/dtd/journalmeta3.ent +278 -0
  177. data/lib/dtd/atypon/3.0.5/dtd/link3.ent +301 -0
  178. data/lib/dtd/atypon/3.0.5/dtd/list3.ent +314 -0
  179. data/lib/dtd/atypon/3.0.5/dtd/math3.ent +269 -0
  180. data/lib/dtd/atypon/3.0.5/dtd/mathml/mmlalias.ent +564 -0
  181. data/lib/dtd/atypon/3.0.5/dtd/mathml/mmlextra.ent +122 -0
  182. data/lib/dtd/atypon/3.0.5/dtd/mathml2-qname-1.mod +286 -0
  183. data/lib/dtd/atypon/3.0.5/dtd/mathml2.dtd +2206 -0
  184. data/lib/dtd/atypon/3.0.5/dtd/mathmlsetup3.ent +238 -0
  185. data/lib/dtd/atypon/3.0.5/dtd/modules3.ent +414 -0
  186. data/lib/dtd/atypon/3.0.5/dtd/nlmcitation3.ent +120 -0
  187. data/lib/dtd/atypon/3.0.5/dtd/notat3.ent +164 -0
  188. data/lib/dtd/atypon/3.0.5/dtd/oasis-exchange.ent +387 -0
  189. data/lib/dtd/atypon/3.0.5/dtd/oasis-tablesetup3.ent +261 -0
  190. data/lib/dtd/atypon/3.0.5/dtd/para3.ent +354 -0
  191. data/lib/dtd/atypon/3.0.5/dtd/phrase3.ent +332 -0
  192. data/lib/dtd/atypon/3.0.5/dtd/references3.ent +758 -0
  193. data/lib/dtd/atypon/3.0.5/dtd/related-object3.ent +130 -0
  194. data/lib/dtd/atypon/3.0.5/dtd/section3.ent +198 -0
  195. data/lib/dtd/atypon/3.0.5/dtd/xhtml-inlstyle-1.mod +34 -0
  196. data/lib/dtd/atypon/3.0.5/dtd/xhtml-table-1.mod +333 -0
  197. data/lib/dtd/atypon/3.0.5/dtd/xmlchars/isogrk1.ent +70 -0
  198. data/lib/dtd/atypon/3.0.5/dtd/xmlchars/isogrk2.ent +41 -0
  199. data/lib/dtd/atypon/3.0.5/dtd/xmlchars/isogrk4.ent +66 -0
  200. data/lib/dtd/atypon/3.0.5/dtd/xmlspecchars3.ent +300 -0
  201. data/lib/xml_jats_resolver.rb +3 -0
  202. data/xml_jats_resolver.gemspec +1 -1
  203. metadata +200 -2
data/lib/dtd/atypon/3.0.1/dtd/atypon-archivearticle3.dtd ADDED
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+ <!-- ============================================================= -->
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+ <!-- MODULE: Journal Archiving and Interchange DTD -->
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+ <!-- VERSION: 3.0.1 -->
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+ <!-- DATE: Apr 2009 -->
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+ <!-- -->
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+ <!-- ============================================================= -->
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+
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+ <!-- ============================================================= -->
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+ <!-- PUBLIC DOCUMENT TYPE DEFINITION -->
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+ <!-- TYPICAL INVOCATION -->
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+ <!--
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+ "-//Atypon//DTD Atypon Systems Journal Archiving and Interchange NLM DTD v3.0.1 20100714//EN"
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+ Delivered as file "atypon-archivearticle3.dtd" -->
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+ <!-- ============================================================= -->
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+
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+
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+ <!-- ============================================================= -->
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+ <!-- SYSTEM: Journal Archiving and Interchange DTD of the -->
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+ <!-- Archiving and Interchange DTD Suite -->
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+ <!-- -->
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+ <!-- PURPOSE: DTD to describe a full-text journal article -->
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+ <!-- -->
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+ <!-- The Journal Archiving and Interchange DTD -->
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+ <!-- describes journal articles and some non-article -->
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+ <!-- material such as product and book reviews for -->
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+ <!-- repository or interchange purposes. It describes -->
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+ <!-- both the metadata for a journal article and the -->
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+ <!-- full content of the article. -->
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+ <!-- This DTD was constructed using the modules in the -->
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+ <!-- Archiving and Interchange DTD Suite, using almost -->
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+ <!-- no customization. -->
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+ <!-- -->
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+ <!-- CONTAINS: 1) Declare and invoke the Archival (Green) DTD- -->
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+ <!-- specific module of modules, that names any -->
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+ <!-- modules created expressly for this DTD. -->
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+ <!-- (%archivecustom-modules.ent;) -->
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+ <!-- 2) Declare and invoke the DTD Suite module of -->
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+ <!-- modules (%modules.ent;), the Archiving and -->
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+ <!-- Interchange Suite module that names all the -->
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+ <!-- Suite modules this DTD might invoke -->
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+ <!-- 3) Invoke DTD-specific classes over-ride module -->
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+ <!-- (%archivecustom-classes.ent;) -->
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+ <!-- 4) Invoke Suite default classes -->
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+ <!-- (%default-classes.ent;) -->
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+ <!-- 5) Invoke DTD-specific mixes over-ride module -->
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+ <!-- (%archivecustom-mixes.ent;) -->
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+ <!-- 6) Invoke Suite default mixes -->
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+ <!-- (%default-mixes.ent;) -->
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+ <!-- 7) Invoke DTD-specific content model over-ride -->
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+ <!-- module (%archivecustom-models.ent;) -->
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+ <!-- 8) Invoke the Common Element Module (from Suite) -->
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+ <!-- 9) Invoke all the Class Modules (from Suite) as -->
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+ <!-- well as any DTD-specific element modules -->
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+ <!-- 10) Parameter Entities for attribute values used -->
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+ <!-- in this module (DTD-specific definitions) -->
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+ <!-- 11) Define document element (Article <article>) -->
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+ <!-- 12) Define Front Matter <front> -->
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+ <!-- 13) Define Body Matter <body> -->
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+ <!-- 14) Define Back Matter <back> -->
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+ <!-- -->
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+ <!-- TAG SET SPONSOR -->
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+ <!-- Digital Archive of Journal Articles -->
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+ <!-- National Center for Biotechnology Information -->
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+ <!-- (NCBI) -->
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+ <!-- National Library of Medicine (NLM) -->
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+ <!-- -->
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+ <!-- CREATED FOR: -->
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+ <!-- Digital archives and publishers who wish to -->
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+ <!-- create a custom XML DTD for original markup of -->
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+ <!-- journal literature, books, and related material, -->
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+ <!-- or for archiving and transferring such material -->
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+ <!-- between archives. -->
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+ <!-- -->
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+ <!-- This DTD is in the public domain. An organization -->
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+ <!-- that wishes to create its own DTD from the suite -->
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+ <!-- may do so without permission from NLM. -->
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+ <!-- -->
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+ <!-- The suite has been set up to be extended using a -->
79
+ <!-- new DTD file and a new DTD-specific customization -->
80
+ <!-- module to redefine the many Parameter Entities. -->
81
+ <!-- Do not modify the suite directly or redistribute -->
82
+ <!-- modified versions of the suite. -->
83
+ <!-- -->
84
+ <!-- In the interest of maintaining consistency and -->
85
+ <!-- clarity for potential users, NLM requests: -->
86
+ <!-- -->
87
+ <!-- 1. If you create a DTD from the Archiving and -->
88
+ <!-- Interchange DTD Suite and intend to stay -->
89
+ <!-- compatible with the suite, then please include -->
90
+ <!-- the following statement as a comment in all of -->
91
+ <!-- your DTD modules: -->
92
+ <!-- "Created from, and fully compatible with, -->
93
+ <!-- the Archiving and Interchange DTD Suite." -->
94
+ <!-- -->
95
+ <!-- 2. If you alter one or more modules of the suite, -->
96
+ <!-- then please rename your version and all its -->
97
+ <!-- modules to avoid any confusion with the -->
98
+ <!-- original suite. Also, please include the -->
99
+ <!-- following statement as a comment in all your -->
100
+ <!-- DTD modules: -->
101
+ <!-- "Based in part on, but not fully compatible -->
102
+ <!-- with, the Archiving and Interchange DTD -->
103
+ <!-- Suite." -->
104
+ <!-- -->
105
+ <!-- ORIGINAL CREATION DATE: -->
106
+ <!-- December 2002 -->
107
+ <!-- -->
108
+ <!-- CREATED BY: Jeff Beck (NCBI) -->
109
+ <!-- Deborah Lapeyre (Mulberry Technologies, Inc.) -->
110
+ <!-- Bruce Rosenblum (Inera Inc.) -->
111
+ <!-- -->
112
+ <!-- The Journal Archiving and Interchange DTD is -->
113
+ <!-- built from the Archiving and Interchange DTD -->
114
+ <!-- Suite. -->
115
+ <!-- -->
116
+ <!-- NLM thanks the Harvard University Libraries, both -->
117
+ <!-- for proposing that a draft archiving NLM DTD for -->
118
+ <!-- life sciences journals be extended to accommodate -->
119
+ <!-- journals in all disciplines and for sponsoring -->
120
+ <!-- Bruce Rosenblum's collaboration with other DTD -->
121
+ <!-- authors in completing Version 1.0. The Andrew W. -->
122
+ <!-- Mellon Foundation provided support for these -->
123
+ <!-- important contributions. -->
124
+ <!-- -->
125
+ <!-- Suggestions for refinements and enhancements to -->
126
+ <!-- this DTD should be sent in email to: -->
127
+ <!-- archive-dtd@ncbi.nlm.nih.gov -->
128
+ <!-- ============================================================= -->
129
+
130
+
131
+ <!-- ============================================================= -->
132
+ <!-- DTD VERSION/CHANGE HISTORY -->
133
+ <!-- ============================================================= -->
134
+ <!--
135
+
136
+ =============================================================
137
+
138
+ Version Reason/Occasion (who) vx.x (yyyy-mm-dd)
139
+
140
+ =============================================================
141
+ Version 3.0 (DAL/BTU) v3.0 (2007-10-31)
142
+
143
+ Version 3.0 is the first non-backward-compatible release.
144
+ In addition to the usual incremental changes, some
145
+ elements and attributes have been renamed and/or remodeled
146
+ to better meet user needs and to increase tag set consistency.
147
+ All module change histories are available through the Tag Suite
148
+ web site at http://dtd.nlm.nih.gov.
149
+
150
+ Details on version 3.0 are available at
151
+ http://dtd.nlm.nih.gov/3.0.
152
+
153
+ 2. Changed default @xml:lang from "EN" from "en" to match latest
154
+ RFC 4646/W3C/IANA Subtag Registry recommendations
155
+
156
+ 1. Updated public identifier to "v3.0 20080202//EN" -->
157
+
158
+
159
+ <!-- ============================================================= -->
160
+ <!-- DESIGN CONSIDERATIONS -->
161
+ <!-- ============================================================= -->
162
+
163
+
164
+ <!-- MODULAR DTD LIBRARY
165
+ A set of journal archiving and interchange
166
+ DTD modules was written as the basis for
167
+ publishing, interchange, and repository
168
+ DTDs, with the intention that DTDs for
169
+ specific purposes, such as this Journal
170
+ Archiving and Interchange DTD, would be
171
+ developed based on them.
172
+
173
+ This archiving DTD has been designed to
174
+ be descriptive, open, and inclusive to
175
+ allow journal articles to be translated into
176
+ this format as conveniently as possible
177
+ from a wide variety of proprietary journal
178
+ article DTDs (such as Blackwell, Keton, and
179
+ Ovid).
180
+
181
+ This Archiving DTD has been developed from
182
+ the Archiving and Interchange DTD Suite
183
+ modules, in the approved manner, making
184
+ changes to the declarations in those modules
185
+ by over-riding Parameter Entity contents
186
+ by redefining the entities in the
187
+ %archivecustomize.ent;
188
+ module, which is called from this DTD file.
189
+ No changes to any of the original Archiving
190
+ and Interchange Suite modules are required
191
+ in order to use this DTD. -->
192
+
193
+
194
+ <!-- ============================================================= -->
195
+ <!-- MODULES OF MODULES INVOKED -->
196
+ <!-- ============================================================= -->
197
+
198
+
199
+ <!-- MODULE TO NAME DTD-SPECIFIC MODULES -->
200
+ <!-- Names all DTD-specific external modules -->
201
+ <!ENTITY % archivecustom-modules.ent PUBLIC
202
+ "-//Atypon//DTD Atypon Systems Archival NLM DTD-Specific Modules v3.0.1 20100714//EN"
203
+ "atypon-archivecustom-modules3.ent" >
204
+ %archivecustom-modules.ent;
205
+
206
+
207
+ <!-- MODULE TO NAME THE MODULES -->
208
+ <!-- Declares all the external modules that are
209
+ part of the modular Journal Archiving and
210
+ Interchange DTD Suite library. Thus it does
211
+ NOT declare itself; the DTD-specific
212
+ module-of-modules; any DTD-specific class,
213
+ mix, or model over-ride modules; or any new
214
+ new content modules specific to this DTD.
215
+ Those are declared in the DTD-specific
216
+ module of modules.
217
+ Since this module declares but does not
218
+ invoke modules, this DTD then invokes any
219
+ modules it uses by referencing the external
220
+ Parameter Entities defined in the Module of
221
+ Modules. To include a set of elements (such
222
+ as all the lists or the MathML elements) this
223
+ module defines the external Parameter Entity
224
+ for the module(s) that contains the MathML
225
+ declarations and the DTD references that
226
+ entity. -->
227
+ <!ENTITY % modules.ent PUBLIC
228
+ "-//Atypon//DTD Atypon Systems Archival NLM DTD Module of Modules v3.0.1 20100714//EN"
229
+ "modules3.ent" >
230
+ %modules.ent;
231
+
232
+
233
+ <!-- ============================================================= -->
234
+ <!-- CUSTOMIZATION MODULES INVOKED -->
235
+ <!-- Note: These modules must be called after -->
236
+ <!-- all Module of Modules but before any other -->
237
+ <!-- modules. Unlike any other grouping, order -->
238
+ <!-- of these modules matters. -->
239
+ <!-- ============================================================= -->
240
+
241
+
242
+ <!-- DTD-SPECIFIC CLASS CUSTOMIZATIONS MODULE -->
243
+ <!-- Names the module that holds the DTD-specific
244
+ class definitions for the Journal Archiving
245
+ and Interchange DTD that over-rides the Suite
246
+ defaults.
247
+ (Defined in %archivecustom-modules.ent; ) -->
248
+ %archivecustom-classes.ent;
249
+
250
+
251
+ <!-- DEFAULT ELEMENT CLASSES MODULE -->
252
+ <!-- Names the module that holds the standard
253
+ class definitions for the Journal Archiving
254
+ and Interchange DTD Suite. -->
255
+ %default-classes.ent;
256
+
257
+
258
+ <!-- DTD-SPECIFIC MIX CUSTOMIZATIONS MODULE -->
259
+ <!-- Set up the Parameter Entities and element
260
+ class definitions that will be used to
261
+ over-ride some element mixes in this DTD.
262
+ (Defined in %archivecustom-modules.ent; ) -->
263
+ %archivecustom-mixes.ent;
264
+
265
+
266
+ <!-- DEFAULT MIX CUSTOMIZATIONS MODULE -->
267
+ <!-- Names the module that holds the standard
268
+ mix definitions for the Journal Archiving
269
+ and Interchange DTD Suite. -->
270
+ %default-mixes.ent;
271
+
272
+
273
+ <!-- DTD-SPECIFIC MODELS/ATTRIBUTES CUSTOMIZATIONS
274
+ MODULE -->
275
+ <!-- Names the module that holds the over-rides
276
+ of content models, attribute lists, elements
277
+ lists to be used in content models, and
278
+ attribute values. These are DTD-specific.
279
+ (Defined in %archivecustom-modules.ent; ) -->
280
+ %archivecustom-models.ent;
281
+
282
+
283
+ <!-- ============================================================= -->
284
+ <!-- COMMON (SHARED) ELEMENTS MODULE INVOKED -->
285
+ <!-- ============================================================= -->
286
+
287
+
288
+ <!-- COMMON (SHARED) DECLARATIONS -->
289
+ <!-- Declarations for elements, attributes,
290
+ entities, and Notations that are shared by
291
+ more than one class module. Note: Must be
292
+ called before any of the class modules. -->
293
+
294
+ %common.ent;
295
+
296
+
297
+ <!-- ============================================================= -->
298
+ <!-- JOURNAL ARTICLE CLASS ELEMENTS (alpha) -->
299
+ <!-- ============================================================= -->
300
+
301
+ <!-- ARTICLE METADATA ELEMENTS -->
302
+ %articlemeta.ent;
303
+
304
+
305
+ <!-- BACK MATTER ELEMENTS -->
306
+ %backmatter.ent;
307
+
308
+
309
+ <!-- DISPLAY (GRAPHICAL) ELEMENTS -->
310
+ %display.ent;
311
+
312
+
313
+ <!-- FORMATTING ELEMENT CLASSES -->
314
+ <!-- Elements that change rendition/display. -->
315
+ %format.ent;
316
+
317
+
318
+ <!-- FUNDING ELEMENTS -->
319
+ <!-- Elements that describe the sponsorship or
320
+ open access -->
321
+ %funding.ent;
322
+
323
+
324
+ <!-- JOURNAL METADATA ELEMENTS -->
325
+ %journalmeta.ent;
326
+
327
+
328
+ <!-- LINK CLASS ELEMENTS -->
329
+ %link.ent;
330
+
331
+
332
+ <!-- LIST CLASS ELEMENTS -->
333
+ %list.ent;
334
+
335
+
336
+ <!-- MATH ELEMENTS -->
337
+ %math.ent;
338
+
339
+
340
+ <!-- NLM CITATION ELEMENT -->
341
+ %nlmcitation.ent;
342
+
343
+
344
+ <!-- PARAGRAPH-LEVEL ELEMENTS -->
345
+ %para.ent;
346
+
347
+
348
+ <!-- PHRASE-LEVEL ELEMENTS -->
349
+ %phrase.ent;
350
+
351
+
352
+ <!-- BIBLIOGRAPHIC REFERENCE (CITATION)
353
+ CLASS ELEMENTS -->
354
+ %references.ent;
355
+
356
+
357
+ <!-- RELATED OBJECT ELEMENT -->
358
+ <!-- Defines the <related-object> element to
359
+ describe a related object such as a
360
+ related book or a dataset. -->
361
+ %related-object.ent;
362
+
363
+
364
+ <!-- SECTION ELEMENTS -->
365
+ %section.ent;
366
+
367
+
368
+ <!-- ============================================================= -->
369
+ <!-- THE REST OF THE EXTERNAL MODULES INVOKED -->
370
+ <!-- ============================================================= -->
371
+
372
+
373
+ <!-- MATHML SETUP MODULE -->
374
+ <!-- Invoke the MathML modules -->
375
+ %mathmlsetup.ent;
376
+
377
+
378
+
379
+ <!-- XHTML TABLE SETUP MODULE -->
380
+ <!-- Set up the necessary Parameter Entity values
381
+ and then invoke XHTML (HTML 4.0) table
382
+ module -->
383
+ %XHTMLtablesetup.ent;
384
+
385
+
386
+ <!-- OASIS XML TABLE SETUP MODULE -->
387
+ <!-- Set all Parameter Entities needed by the
388
+ OASIS (CALS) Table Exchange table model, and
389
+ then call the module containing that model.-->
390
+ %oasis-tablesetup.ent;
391
+
392
+
393
+ <!-- SPECIAL CHARACTERS DECLARATIONS -->
394
+ <!-- Standard XML special character entities
395
+ used in this DTD -->
396
+ %xmlspecchars.ent;
397
+
398
+
399
+ <!-- CUSTOM SPECIAL CHARACTERS DECLARATIONS -->
400
+ <!-- Custom special character entities created
401
+ specifically for use in this DTD Suite -->
402
+ %chars.ent;
403
+
404
+
405
+ <!-- NOTATION DECLARATIONS MODULE -->
406
+ %notat.ent;
407
+
408
+
409
+ <!-- ============================================================= -->
410
+ <!-- PARAMETER ENTITIES FOR ATTRIBUTE LISTS -->
411
+ <!-- ============================================================= -->
412
+
413
+
414
+ <!-- DTD VERSION -->
415
+ <!-- What version of this DTD was used to make
416
+ the document instance under consideration.
417
+ Note that this is a fixed value that should
418
+ change every time the DTD changes versions or
419
+ revisions. -->
420
+ <!ENTITY % dtd-version
421
+ "dtd-version
422
+ CDATA #FIXED '3.0'" >
423
+
424
+
425
+
426
+ <!-- ARTICLE ATTRIBUTES -->
427
+ <!-- Attributes for the top-level element
428
+ <article> -->
429
+ <!ENTITY % article-atts
430
+ "article-type
431
+ CDATA #IMPLIED
432
+ %dtd-version;
433
+ xml:lang NMTOKEN 'en'
434
+ %XLINK.xmlns.attrib;
435
+ %MATHML.xmlns.attrib;
436
+ %Schema.xmlns.attrib;" >
437
+
438
+
439
+ <!-- SUB-ARTICLE ATTRIBUTES -->
440
+ <!-- Attributes for the <sub-article> element -->
441
+ <!ENTITY % sub-article-atts
442
+ "article-type
443
+ CDATA #IMPLIED
444
+ id ID #IMPLIED
445
+ xml:lang NMTOKEN 'en'" >
446
+
447
+
448
+ <!-- RESPONSE ATTRIBUTES -->
449
+ <!-- Attributes for the <response> element -->
450
+ <!ENTITY % response-atts
451
+ "response-type
452
+ CDATA #IMPLIED
453
+ id ID #IMPLIED
454
+ xml:lang NMTOKEN 'en'" >
455
+
456
+
457
+ <!-- ============================================================= -->
458
+ <!-- JOURNAL ARTICLE ELEMENTS -->
459
+ <!-- ============================================================= -->
460
+
461
+
462
+ <!-- ARTICLE MODEL (LIMITED) -->
463
+ <!-- Article-like model used for, for example,
464
+ a short sub-article such as a news brief that
465
+ is contained in side a journal article. -->
466
+ <!ENTITY % article-short-model
467
+ "((front | front-stub), body?, back?,
468
+ floats-group?)" >
469
+
470
+
471
+ <!-- ARTICLE MODEL WITH SUBARTICLE OR RESPONSE -->
472
+ <!-- Typical journal article model, which may
473
+ contain extended components, such as
474
+ sub-articles or responses, -->
475
+ <!ENTITY % article-full-model
476
+ "(front, body?, back?, floats-group?,
477
+ (sub-article* | response*) )" >
478
+
479
+
480
+ <!-- ARTICLE -->
481
+ <!-- The complete content of a journal article.
482
+ Details at:
483
+ http://dtd.nlm.nih.gov/archiving/tag-library/3.0/index.html?elem=article
484
+ -->
485
+ <!ELEMENT article %article-full-model; >
486
+ <!ATTLIST article
487
+ %article-atts; >
488
+
489
+
490
+ <!-- ============================================================= -->
491
+ <!-- FRONT MATTER ELEMENTS -->
492
+ <!-- ============================================================= -->
493
+
494
+
495
+ <!-- FRONT MATTER MODEL -->
496
+ <!-- Model for the <front> matter (the header
497
+ metadata) of a journal article) -->
498
+ <!ENTITY % front-model "(journal-meta?, article-meta,
499
+ (%list.class; | %front.class; |
500
+ %front-back.class;)* )" >
501
+
502
+
503
+ <!-- FRONT MATTER -->
504
+ <!-- The metadata concerning an article, such as
505
+ the name and issue of the journal in which it
506
+ appears and the name and author(s) of the
507
+ article.
508
+ Details at:
509
+ http://dtd.nlm.nih.gov/archiving/tag-library/3.0/index.html?elem=front
510
+ -->
511
+ <!ELEMENT front %front-model; >
512
+
513
+
514
+ <!-- ============================================================= -->
515
+ <!-- BODY ELEMENTS -->
516
+ <!-- ============================================================= -->
517
+
518
+
519
+ <!-- BODY MODEL -->
520
+ <!-- Content model for the Body (main textual
521
+ content) of a journal article. -->
522
+ <!ENTITY % body-model "((%para-level;)*, (%sec-level;)*,
523
+ sig-block?)" >
524
+
525
+
526
+ <!-- BODY OF THE ARTICLE -->
527
+ <!-- The main textual portion of the article that
528
+ conveys the content.
529
+ Details at:
530
+ http://dtd.nlm.nih.gov/archiving/tag-library/3.0/index.html?elem=body
531
+ -->
532
+ <!ELEMENT body %body-model; >
533
+
534
+
535
+ <!-- ============================================================= -->
536
+ <!-- BACK MATTER ELEMENTS -->
537
+ <!-- ============================================================= -->
538
+
539
+
540
+ <!-- BACK MATTER MODEL -->
541
+ <!-- Content model for the Back Matter (ancillary
542
+ material such as appendices) of a journal
543
+ article. -->
544
+ <!ENTITY % back-model "(label?, title*,
545
+ (%doc-back-matter-mix;)* )" >
546
+
547
+
548
+ <!-- BACK MATTER -->
549
+ <!-- Ancillary or supporting material not included
550
+ as part of the main textual content of a
551
+ journal article, for example appendices and
552
+ acknowledgments.
553
+ Details at:
554
+ http://dtd.nlm.nih.gov/archiving/tag-library/3.0/index.html?elem=back
555
+ -->
556
+ <!ELEMENT back %back-model; >
557
+
558
+
559
+ <!-- ============================================================= -->
560
+ <!-- SUBARTICLE -->
561
+ <!-- ============================================================= -->
562
+
563
+
564
+ <!-- SUBARTICLE MODEL -->
565
+ <!-- Content model for the <sub-article> element
566
+ -->
567
+ <!ENTITY % sub-article-model
568
+ "( (front | front-stub), body?, back?,
569
+ floats-group?,
570
+ (sub-article* | response*) )" >
571
+
572
+
573
+ <!-- SUBARTICLE -->
574
+ <!-- An article that is completely contained
575
+ inside another article. Both the article and
576
+ the subarticle have their own metadata.
577
+ Details at:
578
+ http://dtd.nlm.nih.gov/archiving/tag-library/3.0/index.html?elem=sub-article
579
+ -->
580
+ <!ELEMENT sub-article %sub-article-model; >
581
+ <!ATTLIST sub-article
582
+ %sub-article-atts; >
583
+
584
+
585
+ <!-- FRONT MODEL STUB -->
586
+ <!-- Content model for the <front-stub> element,
587
+ a reduced metadata set for use in
588
+ sub-articles and responses. -->
589
+ <!ENTITY % front-stub-model
590
+ "(article-id*, article-categories?,
591
+ title-group?,
592
+ (contrib-group | aff | %x.class;)*,
593
+ author-notes?, pub-date*,
594
+ volume?, volume-id*, volume-series?,
595
+ issue?, issue-id*, issue-title*,
596
+ issue-sponsor*, issue-part?, isbn*,
597
+ supplement?,
598
+ ( ( (fpage, lpage?)?, page-range?) |
599
+ elocation-id )?,
600
+ (%address-link.class; | product |
601
+ supplementary-material)*,
602
+ history?, permissions?, self-uri*,
603
+ related-article*, abstract*,
604
+ trans-abstract*, kwd-group*,
605
+ funding-group*, conference*, counts?,
606
+ custom-meta-group?)" >
607
+
608
+
609
+ <!-- STUB FRONT METADATA -->
610
+ <!-- A reduced metadata set for use in
611
+ sub-articles and responses, which will
612
+ inherit metadata not defined in the stub
613
+ from the enclosing article
614
+ Details at:
615
+ http://dtd.nlm.nih.gov/archiving/tag-library/3.0/index.html?elem=front-stub
616
+ -->
617
+ <!ELEMENT front-stub %front-stub-model; >
618
+
619
+
620
+ <!-- ============================================================= -->
621
+ <!-- RESPONSE ELEMENTS -->
622
+ <!-- ============================================================= -->
623
+
624
+
625
+ <!-- RESPONSE -->
626
+ <!-- Reply, response, or commentary concerning the
627
+ journal article.
628
+ Details at:
629
+ http://dtd.nlm.nih.gov/archiving/tag-library/3.0/index.html?elem=response
630
+ -->
631
+ <!ELEMENT response %article-short-model; >
632
+ <!ATTLIST response
633
+ %response-atts; >
634
+
635
+
636
+ <!-- ================== End Journal Archiving and Interchange DTD -->