xml_jats_resolver 0.1.0 → 0.2.0

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Files changed (203) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +4 -0
  3. data/lib/dtd/atypon/3.0.1/dtd/XHTMLtablesetup3.ent +284 -0
  4. data/lib/dtd/atypon/3.0.1/dtd/annotation3.ent +266 -0
  5. data/lib/dtd/atypon/3.0.1/dtd/articlemeta3.ent +1368 -0
  6. data/lib/dtd/atypon/3.0.1/dtd/atypon-archivearticle3.dtd +636 -0
  7. data/lib/dtd/atypon/3.0.1/dtd/atypon-archivecustom-classes3.ent +178 -0
  8. data/lib/dtd/atypon/3.0.1/dtd/atypon-archivecustom-mixes3.ent +253 -0
  9. data/lib/dtd/atypon/3.0.1/dtd/atypon-archivecustom-models3.ent +987 -0
  10. data/lib/dtd/atypon/3.0.1/dtd/atypon-archivecustom-modules3.ent +140 -0
  11. data/lib/dtd/atypon/3.0.1/dtd/atypon-elements.ent +207 -0
  12. data/lib/dtd/atypon/3.0.1/dtd/backmatter3.ent +275 -0
  13. data/lib/dtd/atypon/3.0.1/dtd/base-test3.dtd +714 -0
  14. data/lib/dtd/atypon/3.0.1/dtd/catalog-v3.xml +618 -0
  15. data/lib/dtd/atypon/3.0.1/dtd/catalog.ent +163 -0
  16. data/lib/dtd/atypon/3.0.1/dtd/chars3.ent +365 -0
  17. data/lib/dtd/atypon/3.0.1/dtd/common3.ent +2771 -0
  18. data/lib/dtd/atypon/3.0.1/dtd/default-classes3.ent +785 -0
  19. data/lib/dtd/atypon/3.0.1/dtd/default-mixes3.ent +292 -0
  20. data/lib/dtd/atypon/3.0.1/dtd/display3.ent +799 -0
  21. data/lib/dtd/atypon/3.0.1/dtd/format3.ent +384 -0
  22. data/lib/dtd/atypon/3.0.1/dtd/funding3.ent +342 -0
  23. data/lib/dtd/atypon/3.0.1/dtd/htmltable.dtd +334 -0
  24. data/lib/dtd/atypon/3.0.1/dtd/iso8879/isobox.ent +61 -0
  25. data/lib/dtd/atypon/3.0.1/dtd/iso8879/isocyr1.ent +88 -0
  26. data/lib/dtd/atypon/3.0.1/dtd/iso8879/isocyr2.ent +47 -0
  27. data/lib/dtd/atypon/3.0.1/dtd/iso8879/isodia.ent +35 -0
  28. data/lib/dtd/atypon/3.0.1/dtd/iso8879/isolat1.ent +83 -0
  29. data/lib/dtd/atypon/3.0.1/dtd/iso8879/isolat2.ent +142 -0
  30. data/lib/dtd/atypon/3.0.1/dtd/iso8879/isonum.ent +97 -0
  31. data/lib/dtd/atypon/3.0.1/dtd/iso8879/isopub.ent +105 -0
  32. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isoamsa.ent +167 -0
  33. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isoamsb.ent +143 -0
  34. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isoamsc.ent +43 -0
  35. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isoamsn.ent +114 -0
  36. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isoamso.ent +73 -0
  37. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isoamsr.ent +204 -0
  38. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isogrk3.ent +64 -0
  39. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isomfrk.ent +75 -0
  40. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isomopf.ent +49 -0
  41. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isomscr.ent +75 -0
  42. data/lib/dtd/atypon/3.0.1/dtd/iso9573-13/isotech.ent +182 -0
  43. data/lib/dtd/atypon/3.0.1/dtd/issuexml.dtd +262 -0
  44. data/lib/dtd/atypon/3.0.1/dtd/journalmeta3.ent +278 -0
  45. data/lib/dtd/atypon/3.0.1/dtd/link3.ent +301 -0
  46. data/lib/dtd/atypon/3.0.1/dtd/list3.ent +314 -0
  47. data/lib/dtd/atypon/3.0.1/dtd/math3.ent +269 -0
  48. data/lib/dtd/atypon/3.0.1/dtd/mathml/mmlalias.ent +564 -0
  49. data/lib/dtd/atypon/3.0.1/dtd/mathml/mmlextra.ent +122 -0
  50. data/lib/dtd/atypon/3.0.1/dtd/mathml2-qname-1.mod +286 -0
  51. data/lib/dtd/atypon/3.0.1/dtd/mathml2.dtd +2206 -0
  52. data/lib/dtd/atypon/3.0.1/dtd/mathmlsetup3.ent +238 -0
  53. data/lib/dtd/atypon/3.0.1/dtd/modules3.ent +414 -0
  54. data/lib/dtd/atypon/3.0.1/dtd/nlmcitation3.ent +120 -0
  55. data/lib/dtd/atypon/3.0.1/dtd/notat3.ent +164 -0
  56. data/lib/dtd/atypon/3.0.1/dtd/oasis-exchange.ent +387 -0
  57. data/lib/dtd/atypon/3.0.1/dtd/oasis-tablesetup3.ent +261 -0
  58. data/lib/dtd/atypon/3.0.1/dtd/para3.ent +354 -0
  59. data/lib/dtd/atypon/3.0.1/dtd/phrase3.ent +332 -0
  60. data/lib/dtd/atypon/3.0.1/dtd/references3.ent +758 -0
  61. data/lib/dtd/atypon/3.0.1/dtd/related-object3.ent +130 -0
  62. data/lib/dtd/atypon/3.0.1/dtd/section3.ent +198 -0
  63. data/lib/dtd/atypon/3.0.1/dtd/xhtml-inlstyle-1.mod +34 -0
  64. data/lib/dtd/atypon/3.0.1/dtd/xhtml-table-1.mod +333 -0
  65. data/lib/dtd/atypon/3.0.1/dtd/xmlchars/isogrk1.ent +70 -0
  66. data/lib/dtd/atypon/3.0.1/dtd/xmlchars/isogrk2.ent +41 -0
  67. data/lib/dtd/atypon/3.0.1/dtd/xmlchars/isogrk4.ent +66 -0
  68. data/lib/dtd/atypon/3.0.1/dtd/xmlspecchars3.ent +300 -0
  69. data/lib/dtd/atypon/3.0.4/dtd/XHTMLtablesetup3.ent +284 -0
  70. data/lib/dtd/atypon/3.0.4/dtd/annotation3.ent +266 -0
  71. data/lib/dtd/atypon/3.0.4/dtd/articlemeta3.ent +1368 -0
  72. data/lib/dtd/atypon/3.0.4/dtd/atypon-archivearticle3.dtd +645 -0
  73. data/lib/dtd/atypon/3.0.4/dtd/atypon-archivecustom-classes3.ent +178 -0
  74. data/lib/dtd/atypon/3.0.4/dtd/atypon-archivecustom-mixes3.ent +253 -0
  75. data/lib/dtd/atypon/3.0.4/dtd/atypon-archivecustom-models3.ent +996 -0
  76. data/lib/dtd/atypon/3.0.4/dtd/atypon-archivecustom-modules3.ent +140 -0
  77. data/lib/dtd/atypon/3.0.4/dtd/atypon-elements.ent +201 -0
  78. data/lib/dtd/atypon/3.0.4/dtd/backmatter3.ent +275 -0
  79. data/lib/dtd/atypon/3.0.4/dtd/base-test3.dtd +714 -0
  80. data/lib/dtd/atypon/3.0.4/dtd/catalog-v3.xml +618 -0
  81. data/lib/dtd/atypon/3.0.4/dtd/catalog.ent +98 -0
  82. data/lib/dtd/atypon/3.0.4/dtd/chars3.ent +365 -0
  83. data/lib/dtd/atypon/3.0.4/dtd/common3.ent +2771 -0
  84. data/lib/dtd/atypon/3.0.4/dtd/default-classes3.ent +785 -0
  85. data/lib/dtd/atypon/3.0.4/dtd/default-mixes3.ent +292 -0
  86. data/lib/dtd/atypon/3.0.4/dtd/display3.ent +799 -0
  87. data/lib/dtd/atypon/3.0.4/dtd/format3.ent +384 -0
  88. data/lib/dtd/atypon/3.0.4/dtd/funding3.ent +342 -0
  89. data/lib/dtd/atypon/3.0.4/dtd/htmltable.dtd +334 -0
  90. data/lib/dtd/atypon/3.0.4/dtd/iso8879/isobox.ent +61 -0
  91. data/lib/dtd/atypon/3.0.4/dtd/iso8879/isocyr1.ent +88 -0
  92. data/lib/dtd/atypon/3.0.4/dtd/iso8879/isocyr2.ent +47 -0
  93. data/lib/dtd/atypon/3.0.4/dtd/iso8879/isodia.ent +35 -0
  94. data/lib/dtd/atypon/3.0.4/dtd/iso8879/isolat1.ent +83 -0
  95. data/lib/dtd/atypon/3.0.4/dtd/iso8879/isolat2.ent +142 -0
  96. data/lib/dtd/atypon/3.0.4/dtd/iso8879/isonum.ent +97 -0
  97. data/lib/dtd/atypon/3.0.4/dtd/iso8879/isopub.ent +105 -0
  98. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isoamsa.ent +167 -0
  99. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isoamsb.ent +143 -0
  100. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isoamsc.ent +43 -0
  101. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isoamsn.ent +114 -0
  102. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isoamso.ent +73 -0
  103. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isoamsr.ent +204 -0
  104. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isogrk3.ent +64 -0
  105. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isomfrk.ent +75 -0
  106. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isomopf.ent +49 -0
  107. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isomscr.ent +75 -0
  108. data/lib/dtd/atypon/3.0.4/dtd/iso9573-13/isotech.ent +182 -0
  109. data/lib/dtd/atypon/3.0.4/dtd/issuexml.dtd +266 -0
  110. data/lib/dtd/atypon/3.0.4/dtd/journalmeta3.ent +278 -0
  111. data/lib/dtd/atypon/3.0.4/dtd/link3.ent +301 -0
  112. data/lib/dtd/atypon/3.0.4/dtd/list3.ent +314 -0
  113. data/lib/dtd/atypon/3.0.4/dtd/math3.ent +269 -0
  114. data/lib/dtd/atypon/3.0.4/dtd/mathml/mmlalias.ent +564 -0
  115. data/lib/dtd/atypon/3.0.4/dtd/mathml/mmlextra.ent +122 -0
  116. data/lib/dtd/atypon/3.0.4/dtd/mathml2-qname-1.mod +286 -0
  117. data/lib/dtd/atypon/3.0.4/dtd/mathml2.dtd +2206 -0
  118. data/lib/dtd/atypon/3.0.4/dtd/mathmlsetup3.ent +238 -0
  119. data/lib/dtd/atypon/3.0.4/dtd/modules3.ent +414 -0
  120. data/lib/dtd/atypon/3.0.4/dtd/nlmcitation3.ent +120 -0
  121. data/lib/dtd/atypon/3.0.4/dtd/notat3.ent +164 -0
  122. data/lib/dtd/atypon/3.0.4/dtd/oasis-exchange.ent +387 -0
  123. data/lib/dtd/atypon/3.0.4/dtd/oasis-tablesetup3.ent +261 -0
  124. data/lib/dtd/atypon/3.0.4/dtd/para3.ent +354 -0
  125. data/lib/dtd/atypon/3.0.4/dtd/phrase3.ent +332 -0
  126. data/lib/dtd/atypon/3.0.4/dtd/references3.ent +758 -0
  127. data/lib/dtd/atypon/3.0.4/dtd/related-object3.ent +130 -0
  128. data/lib/dtd/atypon/3.0.4/dtd/section3.ent +198 -0
  129. data/lib/dtd/atypon/3.0.4/dtd/xhtml-inlstyle-1.mod +34 -0
  130. data/lib/dtd/atypon/3.0.4/dtd/xhtml-table-1.mod +333 -0
  131. data/lib/dtd/atypon/3.0.4/dtd/xmlchars/isogrk1.ent +70 -0
  132. data/lib/dtd/atypon/3.0.4/dtd/xmlchars/isogrk2.ent +41 -0
  133. data/lib/dtd/atypon/3.0.4/dtd/xmlchars/isogrk4.ent +66 -0
  134. data/lib/dtd/atypon/3.0.4/dtd/xmlspecchars3.ent +300 -0
  135. data/lib/dtd/atypon/3.0.5/dtd/XHTMLtablesetup3.ent +284 -0
  136. data/lib/dtd/atypon/3.0.5/dtd/annotation3.ent +266 -0
  137. data/lib/dtd/atypon/3.0.5/dtd/articlemeta3.ent +1368 -0
  138. data/lib/dtd/atypon/3.0.5/dtd/atypon-archivearticle3.dtd +645 -0
  139. data/lib/dtd/atypon/3.0.5/dtd/atypon-archivecustom-classes3.ent +178 -0
  140. data/lib/dtd/atypon/3.0.5/dtd/atypon-archivecustom-mixes3.ent +253 -0
  141. data/lib/dtd/atypon/3.0.5/dtd/atypon-archivecustom-models3.ent +996 -0
  142. data/lib/dtd/atypon/3.0.5/dtd/atypon-archivecustom-modules3.ent +140 -0
  143. data/lib/dtd/atypon/3.0.5/dtd/atypon-elements.ent +201 -0
  144. data/lib/dtd/atypon/3.0.5/dtd/backmatter3.ent +275 -0
  145. data/lib/dtd/atypon/3.0.5/dtd/base-test3.dtd +714 -0
  146. data/lib/dtd/atypon/3.0.5/dtd/catalog-v3.xml +618 -0
  147. data/lib/dtd/atypon/3.0.5/dtd/catalog.ent +98 -0
  148. data/lib/dtd/atypon/3.0.5/dtd/chars3.ent +365 -0
  149. data/lib/dtd/atypon/3.0.5/dtd/common3.ent +2771 -0
  150. data/lib/dtd/atypon/3.0.5/dtd/default-classes3.ent +785 -0
  151. data/lib/dtd/atypon/3.0.5/dtd/default-mixes3.ent +292 -0
  152. data/lib/dtd/atypon/3.0.5/dtd/display3.ent +799 -0
  153. data/lib/dtd/atypon/3.0.5/dtd/format3.ent +384 -0
  154. data/lib/dtd/atypon/3.0.5/dtd/funding3.ent +342 -0
  155. data/lib/dtd/atypon/3.0.5/dtd/htmltable.dtd +334 -0
  156. data/lib/dtd/atypon/3.0.5/dtd/iso8879/isobox.ent +61 -0
  157. data/lib/dtd/atypon/3.0.5/dtd/iso8879/isocyr1.ent +88 -0
  158. data/lib/dtd/atypon/3.0.5/dtd/iso8879/isocyr2.ent +47 -0
  159. data/lib/dtd/atypon/3.0.5/dtd/iso8879/isodia.ent +35 -0
  160. data/lib/dtd/atypon/3.0.5/dtd/iso8879/isolat1.ent +83 -0
  161. data/lib/dtd/atypon/3.0.5/dtd/iso8879/isolat2.ent +142 -0
  162. data/lib/dtd/atypon/3.0.5/dtd/iso8879/isonum.ent +97 -0
  163. data/lib/dtd/atypon/3.0.5/dtd/iso8879/isopub.ent +105 -0
  164. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isoamsa.ent +167 -0
  165. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isoamsb.ent +143 -0
  166. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isoamsc.ent +43 -0
  167. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isoamsn.ent +114 -0
  168. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isoamso.ent +73 -0
  169. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isoamsr.ent +204 -0
  170. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isogrk3.ent +64 -0
  171. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isomfrk.ent +75 -0
  172. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isomopf.ent +49 -0
  173. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isomscr.ent +75 -0
  174. data/lib/dtd/atypon/3.0.5/dtd/iso9573-13/isotech.ent +182 -0
  175. data/lib/dtd/atypon/3.0.5/dtd/issuexml.dtd +262 -0
  176. data/lib/dtd/atypon/3.0.5/dtd/journalmeta3.ent +278 -0
  177. data/lib/dtd/atypon/3.0.5/dtd/link3.ent +301 -0
  178. data/lib/dtd/atypon/3.0.5/dtd/list3.ent +314 -0
  179. data/lib/dtd/atypon/3.0.5/dtd/math3.ent +269 -0
  180. data/lib/dtd/atypon/3.0.5/dtd/mathml/mmlalias.ent +564 -0
  181. data/lib/dtd/atypon/3.0.5/dtd/mathml/mmlextra.ent +122 -0
  182. data/lib/dtd/atypon/3.0.5/dtd/mathml2-qname-1.mod +286 -0
  183. data/lib/dtd/atypon/3.0.5/dtd/mathml2.dtd +2206 -0
  184. data/lib/dtd/atypon/3.0.5/dtd/mathmlsetup3.ent +238 -0
  185. data/lib/dtd/atypon/3.0.5/dtd/modules3.ent +414 -0
  186. data/lib/dtd/atypon/3.0.5/dtd/nlmcitation3.ent +120 -0
  187. data/lib/dtd/atypon/3.0.5/dtd/notat3.ent +164 -0
  188. data/lib/dtd/atypon/3.0.5/dtd/oasis-exchange.ent +387 -0
  189. data/lib/dtd/atypon/3.0.5/dtd/oasis-tablesetup3.ent +261 -0
  190. data/lib/dtd/atypon/3.0.5/dtd/para3.ent +354 -0
  191. data/lib/dtd/atypon/3.0.5/dtd/phrase3.ent +332 -0
  192. data/lib/dtd/atypon/3.0.5/dtd/references3.ent +758 -0
  193. data/lib/dtd/atypon/3.0.5/dtd/related-object3.ent +130 -0
  194. data/lib/dtd/atypon/3.0.5/dtd/section3.ent +198 -0
  195. data/lib/dtd/atypon/3.0.5/dtd/xhtml-inlstyle-1.mod +34 -0
  196. data/lib/dtd/atypon/3.0.5/dtd/xhtml-table-1.mod +333 -0
  197. data/lib/dtd/atypon/3.0.5/dtd/xmlchars/isogrk1.ent +70 -0
  198. data/lib/dtd/atypon/3.0.5/dtd/xmlchars/isogrk2.ent +41 -0
  199. data/lib/dtd/atypon/3.0.5/dtd/xmlchars/isogrk4.ent +66 -0
  200. data/lib/dtd/atypon/3.0.5/dtd/xmlspecchars3.ent +300 -0
  201. data/lib/xml_jats_resolver.rb +3 -0
  202. data/xml_jats_resolver.gemspec +1 -1
  203. metadata +200 -2
@@ -0,0 +1,618 @@
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+ <?xml version="1.0"?>
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+ <!DOCTYPE catalog PUBLIC
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+ "-//OASIS//DTD Entity Resolution XML Catalog V3.0//EN"
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+ "http://www.oasis-open.org/committees/entity/release/1.0/catalog.dtd">
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+
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+ <catalog xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog"
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+ prefer="public">
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+
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+ <!-- ============================================================= -->
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+ <!-- MODULE: An OASIS XML Catalog (not a DTD Suite module) -->
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+ <!-- VERSION: 3.0 -->
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+ <!-- DATE: Feb 2008 -->
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+ <!-- -->
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+ <!-- ============================================================= -->
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+
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+ <!-- ============================================================= -->
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+ <!-- SYSTEM: Archiving and Interchange DTD Suite -->
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+ <!-- -->
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+ <!-- PURPOSE: To make the connection between PUBLIC identifiers -->
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+ <!-- for DTD Suite modules and their URIs -->
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+ <!-- -->
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+ <!-- CONTAINS: 1) Scope of Catalog -->
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+ <!-- 2) Catalog organization comment -->
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+ <!-- 3) How to set up a catalog -->
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+ <!-- 4) PUBLIC/SYSTEM identifier map -->
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+ <!-- a. NLM Journal Publishing DTD (Blue) -->
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+ <!-- b. NLM Journal Archiving and Interchange -->
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+ <!-- DTD (Green) -->
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+ <!-- c. NLM Journal Authoring DTD (Pumpkin) -->
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+ <!-- d. NLM Book DTD (Purple: includes Book -->
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+ <!-- Collection DTD and Historical Book DTD) -->
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+ <!-- e. Archiving and Interchange DTD Suite -->
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+ <!-- common (shared) modules -->
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+ <!-- f. Suite common (shared) modules from -->
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+ <!-- external sources (table models, -->
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+ <!-- general entity sets, etc.) -->
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+ <!-- -->
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+ <!-- CREATED FOR: -->
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+ <!-- Digital Archive of Journal Articles -->
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+ <!-- National Center for Biotechnology Information -->
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+ <!-- (NCBI) -->
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+ <!-- National Library of Medicine (NLM) -->
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+ <!-- -->
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+ <!-- ORIGINAL CREATION DATE: -->
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+ <!-- June 2002 -->
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+ <!-- -->
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+ <!-- Suggestions for refinements and enhancements to -->
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+ <!-- this DTD should be sent in email to: -->
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+ <!-- archive-dtd@ncbi.nlm.nih.gov -->
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+ <!-- ============================================================= -->
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+
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+
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+ <!-- ============================================================= -->
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+ <!-- DTD VERSION/CHANGE HISTORY -->
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+ <!-- ============================================================= -->
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+ <!--
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+ =============================================================
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+
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+ Version Reason/Occasion (who) vx.x (yyyy-mm-dd)
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+
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+ =============================================================
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+ Version 3.0 (DAL/BTU) v3.0 (2007-10-31)
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+
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+ Version 3.0 is the first non-backward-compatible release.
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+ In addition to the usual incremental changes, some
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+ elements and attributes have been renamed and/or remodeled
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+ to better meet user needs and to increase tag set consistency.
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+ All module change histories are available through the Tag Suite
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+ web site at http://dtd.nlm.nih.gov.
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+
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+ Details on version 3.0 are available at
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+ http://dtd.nlm.nih.gov/3.0.
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+
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+ 1. Updated public identifiers to "v3.0 20080202//EN"
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+ fresh start.
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+
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+ =============================================================
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+ (LAK) v3.0 (2008-12-2)
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+
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+ 1. Updated PUBLIC identifier for Archiving DTD using OASIS
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+ table models.
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+ 2. Added declaration for funding3.ent. -->
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+
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+
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+ <!-- ============================================================== -->
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+ <!-- SCOPE (Suite Version 3.0) -->
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+ <!-- ============================================================== -->
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+
89
+ <!-- This catalog is made up of several groups, each with its own
90
+ xml:base attribute, for:
91
+
92
+ - NLM Journal Publishing DTD (Blue)
93
+ - NLM Journal Archiving and Interchange DTD (Green)
94
+ - NLM Journal Authoring DTD (Pumpkin)
95
+ - NLM Book DTD (Purple: includes Book Collection DTD)
96
+ - Archiving and Interchange DTD Suite common (shared) modules
97
+ - Suite common (shared) modules from external sources
98
+ (table models, general entity sets, etc.) -->
99
+
100
+ <!-- ============================================================== -->
101
+ <!-- CATALOG ORGANIZATION -->
102
+ <!-- ============================================================== -->
103
+
104
+ <!-- GROUPS AND ENTRIES
105
+
106
+ Entries are grouped into logical clusters, organized by the
107
+ particular DTD variant.
108
+
109
+ Each catalog entry associates a PUBLIC identifier with a SYSTEM
110
+ identifier.
111
+
112
+ The SYSTEM identifier is resolved with respect to the xml:base
113
+ attribute which is set on the group element. Thus, for example:
114
+
115
+ xml:base="file:///C:/Work/Tasks/DTDJournal/"
116
+ +
117
+ uri="journalpublishing.dtd"
118
+ =
119
+ file:///C:/Work/Tasks/DTDJournal/journalpublishing.dtd
120
+
121
+ The XML looks like this:
122
+
123
+ <group xml:base="file:///C:/Work/Tasks/DTDJournal/">
124
+
125
+ <public publicId="-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN"
126
+ uri="journalpublishing3.dtd"/>
127
+ ...
128
+ </group>
129
+ -->
130
+
131
+
132
+ <!-- ============================================================== -->
133
+ <!-- HOW TO SET UP -->
134
+ <!-- ============================================================== -->
135
+
136
+ <!-- The OASIS catalog and the NCBI Suite of Modules provide a wide
137
+ range of flexibility for setting up. Here are two easy ways to
138
+ do it:
139
+
140
+
141
+ 1. WITHOUT an OASIS catalog (DTD components on a local system):
142
+
143
+ - unzip the DTD packages you want to use into a single
144
+ directory:
145
+
146
+ - the journal-publishing package
147
+ - the archive article package
148
+ - the journal-authoring package
149
+ - the book package
150
+
151
+ - create your own DTD customization, if you need to,
152
+ anywhere, using local (relative or absolute) SYSTEM
153
+ identifiers to reference DTD modules.
154
+
155
+ - create a document instance anywhere, and point its
156
+ SYSTEM identifier to your customized DTD or to the
157
+ package DTD you have chosen to use, using a local
158
+ (relative or absolute) SYSTEM identifier.
159
+
160
+ The SYSTEM identifiers used in the DTD modules are relative
161
+ to the directory in which you have placed the DTD package
162
+ and your customized DTD, and so your editor/processor will
163
+ find them when reading the DTD.
164
+
165
+ 2. WITH this OASIS catalog (DTD components on a local system):
166
+
167
+ - unzip the DTD packages you want to use into a single
168
+ directory, or into separate directories.
169
+
170
+ - in this file (the catalog), edit the xml:base attribute
171
+ on the <group> elements.
172
+
173
+ Here are instructions for the two most likely
174
+ configurations:
175
+
176
+ - if you have unzipped only one of the DTD packages
177
+ (journal, archive article, journal-authoring, or
178
+ book):
179
+
180
+ - set the xml:base attribute on the corresponding
181
+ <group> element in this catalog to the directory
182
+ where you put the unzipped components,
183
+
184
+ - AND set the xml:base attribute on the last
185
+ two groups in this catalog (the modular library
186
+ and the public models) to that same directory.
187
+
188
+ - if you have unzipped more than one DTD package into
189
+ a single directory:
190
+
191
+ - set all xml:base attributes to that directory.
192
+
193
+ - create your own DTD customization, if you need to,
194
+ anywhere, using PUBLIC identifiers to reference the
195
+ DTD modules.
196
+
197
+ - tell your editor/processor about this OASIS catalog
198
+ (NB: many apps must be closed and relaunched when
199
+ a catalog file is first specified AND when it is changed)
200
+
201
+ - create a document instance anywhere, and point its
202
+ SYSTEM identifier to the DTD you want to use, giving
203
+ an absolute or relative SYSTEM path.
204
+
205
+ Your editor/processor will map the PUBLIC identifiers
206
+ in the DTD to the SYSTEM identifiers specified in
207
+ this catalog, using xml:base to locate their whereabouts. -->
208
+
209
+
210
+ <!-- ============================================================== -->
211
+ <!-- PUBLIC-SYSTEM IDENTIFIER MAP -->
212
+ <!-- ============================================================== -->
213
+
214
+
215
+ <!-- ============================================================== -->
216
+ <!-- JOURNAL PUBLISHING DTD (BLUE) -->
217
+ <!-- ============================================================== -->
218
+
219
+ <group xml:base="file:///C:/Work/Tasks/DTDJournal/"
220
+ prefer="public">
221
+
222
+ <public publicId="-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN"
223
+ uri="journalpublishing3.dtd"/>
224
+
225
+ <public publicId="-//NLM//DTD Journal Publishing DTD-Specific Modules v3.0 20080202//EN"
226
+ uri="journalpubcustom-modules3.ent"/>
227
+
228
+ <public publicId="-//NLM//DTD Journal Publishing DTD Customize Classes Module v3.0 20080202//EN"
229
+ uri="journalpubcustom-classes3.ent"/>
230
+
231
+ <public publicId="-//NLM//DTD Journal Publishing DTD Customize Mixes Module v3.0 20080202//EN"
232
+ uri="journalpubcustom-mixes3.ent"/>
233
+
234
+ <public publicId="-//NLM//DTD Journal Publishing DTD Customize Content and Attributes Module v3.0 20080202//EN"
235
+ uri="journalpubcustom-models3.ent"/>
236
+
237
+ <public publicId="-//NLM//DTD NLM Citation v3.0 20080202//EN"
238
+ uri="nlmcitation.ent3"/>
239
+
240
+ </group>
241
+
242
+
243
+ <!-- ============================================================== -->
244
+ <!-- JOURNAL ARTICLE ARCHIVING DTD (GREEN) -->
245
+ <!-- ============================================================== -->
246
+
247
+
248
+ <group xml:base="file:///C:/Work/Tasks/DTDArchiving/"
249
+ prefer="public">
250
+
251
+ <public publicId="-//NLM//DTD Journal Archiving and Interchange DTD v3.0 20080202//EN"
252
+ uri="archivearticle3.dtd"/>
253
+
254
+ <public publicId="-//NLM//DTD Journal Archiving DTD-Specific Modules v3.0 20080202//EN"
255
+ uri="archivecustom-modules3.ent"/>
256
+
257
+ <public publicId="-//NLM//DTD Journal Archiving DTD Customize Classes Module v3.0 20080202//EN"
258
+ uri="archivecustom-classes3.ent"/>
259
+
260
+ <public publicId="-//NLM//DTD Journal Archiving DTD Customize Mixes Module v3.0 20080202//EN"
261
+ uri="archivecustom-mixes3.ent"/>
262
+
263
+ <public publicId="-//NLM//DTD Journal Archiving DTD Customize Content and Attributes Module v3.0 20080202//EN"
264
+ uri="archivecustom-models3.ent"/>
265
+
266
+ </group>
267
+
268
+
269
+ <!-- ============================================================== -->
270
+ <!-- JOURNAL ARTICLE AUTHORING DTD (PUMPKIN) -->
271
+ <!-- ============================================================== -->
272
+
273
+
274
+ <group xml:base="file:///C:/Work/Tasks/DTDAuthoring/"
275
+ prefer="public">
276
+
277
+ <public publicId="-//NLM//DTD Article Authoring DTD v3.0 20080202//EN"
278
+ uri="articleauthoring3.dtd"/>
279
+
280
+ <public publicId= "-//NLM//DTD Article Authoring DTD-Specific Modules v3.0 20080202//EN"
281
+ uri="articleauthcustom-modules3.ent"/>
282
+
283
+ <public publicId= "-//NLM//DTD Article Authoring DTD Over-ride Classes Module v3.0 20080202//EN"
284
+ uri="articleauthcustom-classes3.ent"/>
285
+
286
+ <public publicId= "-//NLM//DTD Article Authoring DTD Over-ride Mixes Module v3.0 20080202//EN"
287
+ uri="articleauthcustom-mixes3.ent"/>
288
+
289
+ <public publicId= "-//NLM//DTD Article Authoring DTD Over-ride Content and Attribute Module v3.0 20080202//EN"
290
+ uri="articleauthcustom-models3.ent"/>
291
+
292
+ </group>
293
+
294
+ <!-- ============================================================== -->
295
+ <!-- NCBI BOOK DTDS (PURPLE) -->
296
+ <!-- ============================================================== -->
297
+
298
+ <group xml:base="file:///C:/Work/Tasks/DTDBook/"
299
+ prefer="public">
300
+
301
+ <!-- .............................................................. -->
302
+ <!-- NCBI BOOK DTD -->
303
+ <!-- .............................................................. -->
304
+
305
+ <public publicId="-//NLM//DTD Book DTD v3.0 20080202//EN"
306
+ uri="book3.dtd"/>
307
+
308
+
309
+ <public publicId="-//NLM//DTD Book DTD Module of Modules v3.0 20080202//EN"
310
+ uri="bookcustom-modules3.ent"/>
311
+
312
+ <public publicId="-//NLM//DTD NCBI Book DTD Over-ride Classes Module v3.0 20080202//EN"
313
+ uri="bookcustom-classes3.ent"/>
314
+
315
+ <public publicId="-//NLM//DTD NCBI Book DTD Over-ride Mixes Module v3.0 20080202//EN"
316
+ uri="bookcustom-mixes3.ent"/>
317
+
318
+ <public publicId="-//NLM//DTD NCBI Book DTD Content and Attribute Over-ride Module v3.0 20080202//EN"
319
+ uri="bookcustom-models3.ent"/>
320
+
321
+
322
+ <public publicId="-//NLM//DTD NCBI Book Image Map Elements v3.0 20080202//EN"
323
+ uri="bookimagemap3.ent"/>
324
+
325
+ <public publicId="-//NLM//DTD NCBI Book DTD Book Metadata Elements v3.0 20080202//EN"
326
+ uri="bookmeta3.ent"/>
327
+
328
+ <public publicId="-//NLM//DTD NCBI Book Multi-link Elements v3.0 20080202//EN"
329
+ uri="bookmultilink3.ent"/>
330
+
331
+ <public publicId="-//NLM//DTD NCBI Book DTD Book Component Metadata Elements v3.0 20080202//EN"
332
+ uri="bookpart3.ent"/>
333
+
334
+ <!-- .............................................................. -->
335
+ <!-- NCBI BOOK COLLECTION DTD -->
336
+ <!-- Uses all the book-specific modules above -->
337
+ <!-- .............................................................. -->
338
+
339
+
340
+ <public publicId="-//NLM//DTD NCBI Book Collection DTD v3.0 20080202//EN"
341
+ uri="bookcollection3.dtd"/>
342
+
343
+
344
+
345
+ </group>
346
+
347
+ <!-- ============================================================== -->
348
+ <!-- JOURNAL ARTICLE ARCHIVING OASIS DTD -->
349
+ <!-- ============================================================== -->
350
+
351
+
352
+ <group xml:base="file:///C:/Work/Tasks/DTDArchiving-OASIS/"
353
+ prefer="public">
354
+
355
+ <public publicId="-//NLM//DTD Journal Archiving with OASIS Tables v3.0 20080202//EN"
356
+ uri="archive-oasis-article3.dtd"/>
357
+
358
+ <public publicId="-//NLM//DTD Journal Archiving with OASIS Tables-Specific Modules v3.0 20080202//EN"
359
+ uri="archive-oasis-custom-modules3.ent"/>
360
+
361
+ <public publicId="-//NLM//DTD Journal Archiving with OASIS Tables Customize Classes Module v3.0 20080202//EN"
362
+ uri="archive-oasis-custom-classes3.ent"/>
363
+
364
+ <public publicId="-//NLM//DTD Journal Archiving with OASIS Tables Customize Mixes Module v3.0 20080202//EN"
365
+ uri="archive-oasis-custom-mixes3.ent"/>
366
+
367
+ </group>
368
+
369
+
370
+ <!-- ============================================================== -->
371
+ <!-- JOURNAL PUBLISHING OASIS DTD -->
372
+ <!-- ============================================================== -->
373
+
374
+
375
+ <group xml:base="file:///C:/Work/Tasks/DTDJournal-OASIS/"
376
+ prefer="public">
377
+
378
+ <public publicId="-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN"
379
+ uri="journalpub-oasis3.dtd"/>
380
+
381
+ <public publicId="-//NLM//DTD Journal Publishing with OASIS Tables-Specific Modules v3.0 20080202//EN"
382
+ uri="journalpub-oasis-custom-modules3.ent"/>
383
+
384
+ <public publicId="-//NLM//DTD Journal Publishing with OASIS Tables Customize Classes Module v3.0 20080202//EN"
385
+ uri="journalpub-oasis-custom-classes3.ent"/>
386
+
387
+
388
+ </group>
389
+
390
+
391
+
392
+ <!-- ============================================================== -->
393
+ <!-- ARCHIVING AND INTERCHANGE DTD SUITE -->
394
+ <!-- MODULAR LIBRARY -->
395
+ <!-- ============================================================== -->
396
+
397
+ <group xml:base="file:///C:/Work/Tasks/Common/"
398
+ prefer="public">
399
+
400
+ <!-- MODULE OF MODULES -->
401
+
402
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Module of Modules v3.0 20080202//EN"
403
+ uri="modules3.ent"/>
404
+
405
+
406
+ <!-- CLASSES AND MIXES -->
407
+
408
+ <public publicId="-//NLM//DTD Default Element Classes Module v3.0 20080202//EN"
409
+ uri="default-classes3.ent"/>
410
+
411
+ <public publicId="-//NLM//DTD Default Element Mixes Module v3.0 20080202//EN"
412
+ uri="default-mixes3.ent"/>
413
+
414
+
415
+ <!-- ELEMENT COMMON (SHARED) ELEMENTS/CHARACTERS -->
416
+
417
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Common (Shared) Elements Module v3.0 20080202//EN"
418
+ uri="common3.ent"/>
419
+
420
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Funding Elements v3.0 20080202//EN"
421
+ uri="funding3.ent"/>
422
+
423
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Notation Declarations v3.0 20080202//EN"
424
+ uri="notat3.ent"/>
425
+
426
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite XML Special Characters Module v3.0 20080202//EN"
427
+ uri="xmlspecchars3.ent"/>
428
+
429
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Custom Special Characters Module v3.0 20080202//EN"
430
+ uri="chars3.ent"/>
431
+
432
+
433
+ <!-- CLASS MODULES -->
434
+
435
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Journal Article Metadata Elements v3.0 20080202//EN"
436
+ uri="articlemeta3.ent"/>
437
+
438
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Back Matter Elements v3.0 20080202//EN"
439
+ uri="backmatter3.ent"/>
440
+
441
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Display Class Elements v3.0 20080202//EN"
442
+ uri="display3.ent"/>
443
+
444
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Formatting Element Classes v3.0 20080202//EN"
445
+ uri="format3.ent"/>
446
+
447
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Journal Metadata Elements v3.0 20080202//EN"
448
+ uri="journalmeta3.ent"/>
449
+
450
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Link Class Elements v3.0 20080202//EN"
451
+ uri="link3.ent"/>
452
+
453
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite List Class Elements v3.0 20080202//EN"
454
+ uri="list3.ent"/>
455
+
456
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Math Class Elements v3.0 20080202//EN"
457
+ uri="math3.ent"/>
458
+
459
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Paragraph-Like Elements v3.0 20080202//EN"
460
+ uri="para3.ent"/>
461
+
462
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Subject Phrase Class Elements v3.0 20080202//EN"
463
+ uri="phrase3.ent"/>
464
+
465
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Bibliographic Reference (Citation) Class Elements v3.0 20080202//EN"
466
+ uri="references3.ent"/>
467
+
468
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Related Object Element v3.0 20080202//EN"
469
+ uri="related-object3.ent"/>
470
+
471
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Section Class Elements v3.0 20080202//EN"
472
+ uri="section3.ent"/>
473
+
474
+
475
+ <!-- SET UP TABLES -->
476
+
477
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite XHTML Table Setup Module v3.0 20080202//EN"
478
+ uri="XHTMLtablesetup3.ent"/>
479
+
480
+
481
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite OASIS XML Table Setup Module v1.2 20040830//EN"
482
+ uri="oasis-tablesetup3.ent"/>
483
+
484
+ <!-- SET UP MATHML -->
485
+
486
+ <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite MathML Setup Module v3.0 20080202//EN"
487
+ uri="mathmlsetup3.ent"/>
488
+
489
+ </group>
490
+
491
+
492
+ <!-- ============================================================= -->
493
+ <!-- COMMONLY-USED PUBLIC MODELS AND PUBLIC -->
494
+ <!-- CHARACTER-ENTITY SETS USED IN THE SUITE -->
495
+ <!-- ============================================================= -->
496
+
497
+ <group xml:base="file:///C:/Work/Entities/"
498
+ prefer="public">
499
+
500
+ <!-- .............................................................. -->
501
+ <!-- TABLES: XHTML TABLE MODULES -->
502
+ <!-- .............................................................. -->
503
+
504
+ <public publicId="-//W3C//ELEMENTS XHTML Tables 1.0//EN"
505
+ uri="xhtml-table-1.mod"/>
506
+
507
+ <public publicId="-//W3C//ENTITIES XHTML Inline Style 1.0//EN"
508
+ uri="xhtml-inlstyle-1.mod"/>
509
+
510
+
511
+ <!-- .............................................................. -->
512
+ <!-- TABLES: OASIS EXCHANGE TABLE MODULES -->
513
+ <!-- .............................................................. -->
514
+
515
+ <public publicId="-//OASIS//DTD XML Exchange Table Model 19990315//EN"
516
+ uri="oasis-exchange.ent"/>
517
+
518
+ <!-- .............................................................. -->
519
+ <!-- MATHML MODULES -->
520
+ <!-- .............................................................. -->
521
+
522
+ <public publicId="-//W3C//DTD MathML 2.0//EN"
523
+ uri="mathml2.dtd"/>
524
+
525
+ <public publicId="-//W3C//ENTITIES MathML 2.0 Qualified Names 1.0//EN"
526
+ uri="mathml2-qname-1.mod"/>
527
+
528
+ <public publicId="-//W3C//ENTITIES Extra for MathML 2.0//EN"
529
+ uri="mathml/mmlextra.ent"/>
530
+
531
+ <public publicId="-//W3C//ENTITIES Aliases for MathML 2.0//EN"
532
+ uri="mathml/mmlalias.ent"/>
533
+
534
+
535
+ <!-- .............................................................. -->
536
+ <!-- ISO 8879 ENTITIES -->
537
+ <!-- .............................................................. -->
538
+
539
+
540
+ <public publicId="-//W3C//ENTITIES Box and Line Drawing for MathML 2.0//EN"
541
+ uri="iso8879/isobox.ent"/>
542
+
543
+ <public publicId="-//W3C//ENTITIES Russian Cyrillic for MathML 2.0//EN"
544
+ uri="iso8879/isocyr1.ent"/>
545
+
546
+ <public publicId="-//W3C//ENTITIES Non-Russian Cyrillic for MathML 2.0//EN"
547
+ uri="iso8879/isocyr2.ent"/>
548
+
549
+ <public publicId="-//W3C//ENTITIES Diacritical Marks for MathML 2.0//EN"
550
+ uri="iso8879/isodia.ent"/>
551
+
552
+ <public publicId="-//W3C//ENTITIES Added Latin 1 for MathML 2.0//EN"
553
+ uri="iso8879/isolat1.ent"/>
554
+
555
+ <public publicId="-//W3C//ENTITIES Added Latin 2 for MathML 2.0//EN"
556
+ uri="iso8879/isolat2.ent"/>
557
+
558
+ <public publicId="-//W3C//ENTITIES Numeric and Special Graphic for MathML 2.0//EN"
559
+ uri="iso8879/isonum.ent"/>
560
+
561
+ <public publicId="-//W3C//ENTITIES Publishing for MathML 2.0//EN"
562
+ uri="iso8879/isopub.ent"/>
563
+
564
+ <!-- .............................................................. -->
565
+ <!-- ISO 9573-13 ENTITIES -->
566
+ <!-- .............................................................. -->
567
+
568
+ <public publicId="-//W3C//ENTITIES General Technical for MathML 2.0//EN"
569
+ uri="iso9573-13/isotech.ent"/>
570
+
571
+ <public publicId="-//W3C//ENTITIES Greek Symbols for MathML 2.0//EN"
572
+ uri="iso9573-13/isogrk3.ent"/>
573
+
574
+ <public publicId="-//W3C//ENTITIES Math Alphabets: Script for MathML 2.0//EN"
575
+ uri="iso9573-13/isomscr.ent"/>
576
+
577
+ <public publicId="-//W3C//ENTITIES Added Math Symbols: Arrow Relations for MathML 2.0//EN"
578
+ uri="iso9573-13/isoamsa.ent"/>
579
+
580
+ <public publicId="-//W3C//ENTITIES Added Math Symbols: Binary Operators for MathML 2.0//EN"
581
+ uri="iso9573-13/isoamsb.ent"/>
582
+
583
+ <public publicId="-//W3C//ENTITIES Added Math Symbols: Delimiters for MathML 2.0//EN"
584
+ uri="iso9573-13/isoamsc.ent"/>
585
+
586
+ <public publicId="-//W3C//ENTITIES Added Math Symbols: Negated Relations for MathML 2.0//EN"
587
+ uri="iso9573-13/isoamsn.ent"/>
588
+
589
+ <public publicId="-//W3C//ENTITIES Added Math Symbols: Ordinary for MathML 2.0//EN"
590
+ uri="iso9573-13/isoamso.ent"/>
591
+
592
+ <public publicId="-//W3C//ENTITIES Added Math Symbols: Relations for MathML 2.0//EN"
593
+ uri="iso9573-13/isoamsr.ent"/>
594
+
595
+ <public publicId="-//W3C//ENTITIES Math Alphabets: Fraktur for MathML 2.0//EN"
596
+ uri="iso9573-13/isomfrk.ent"/>
597
+
598
+ <public publicId="-//W3C//ENTITIES Math Alphabets: Open Face for MathML 2.0//EN"
599
+ uri="iso9573-13/isomopf.ent"/>
600
+
601
+ <!-- .............................................................. -->
602
+ <!-- NON-MATHML ENTITIES(backwards compatibility)-->
603
+ <!-- .............................................................. -->
604
+
605
+ <public publicId="-//W3C//ENTITIES Greek Letters//EN"
606
+ uri="xmlchars/isogrk1.ent"/>
607
+
608
+ <public publicId="-//W3C//ENTITIES Monotoniko Greek//EN"
609
+ uri="xmlchars/isogrk2.ent"/>
610
+
611
+ <public publicId="-//W3C//ENTITIES Alternative Greek Symbols//EN"
612
+ uri="xmlchars/isogrk4.ent"/>
613
+
614
+ </group>
615
+
616
+ <!-- ============================================================== -->
617
+
618
+ </catalog>