t2-server 0.6.1 → 0.9.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/.rvmrc +1 -0
- data/CHANGES.rdoc +48 -0
- data/LICENCE.rdoc +2 -2
- data/README.rdoc +245 -10
- data/Rakefile +108 -0
- data/bin/t2-delete-runs +21 -34
- data/bin/t2-get-output +134 -0
- data/bin/t2-run-workflow +121 -109
- data/bin/t2-server-admin +128 -0
- data/bin/t2-server-info +25 -38
- data/lib/t2-server-cli.rb +116 -0
- data/lib/t2-server.rb +16 -27
- data/lib/t2-server/admin.rb +147 -0
- data/lib/t2-server/connection-parameters.rb +144 -0
- data/lib/t2-server/connection.rb +352 -0
- data/lib/t2-server/credentials.rb +84 -0
- data/lib/t2-server/exceptions.rb +42 -21
- data/lib/t2-server/port.rb +472 -0
- data/lib/t2-server/run.rb +822 -227
- data/lib/t2-server/server.rb +313 -317
- data/lib/t2-server/util.rb +71 -0
- data/lib/t2-server/xml/libxml.rb +87 -0
- data/lib/t2-server/xml/nokogiri.rb +85 -0
- data/lib/t2-server/xml/rexml.rb +85 -0
- data/lib/t2-server/xml/xml.rb +111 -0
- data/lib/t2server.rb +4 -1
- data/t2-server.gemspec +112 -0
- data/test/tc_admin.rb +63 -0
- data/test/{tc_paths.rb → tc_params.rb} +11 -25
- data/test/tc_perms.rb +132 -0
- data/test/tc_run.rb +200 -67
- data/test/tc_secure.rb +191 -0
- data/test/tc_server.rb +25 -23
- data/test/tc_util.rb +74 -0
- data/test/ts_t2server.rb +57 -12
- data/test/workflows/always_fail.t2flow +69 -0
- data/test/workflows/list_and_value.t2flow +12 -0
- data/test/workflows/list_with_errors.t2flow +107 -0
- data/test/workflows/secure/basic-http.t2flow +74 -0
- data/test/workflows/secure/basic-https.t2flow +74 -0
- data/test/workflows/secure/client-https.t2flow +162 -0
- data/test/workflows/secure/digest-http.t2flow +129 -0
- data/test/workflows/secure/digest-https.t2flow +107 -0
- data/test/workflows/secure/heater-pk.pem +20 -0
- data/test/workflows/secure/user-cert.p12 +0 -0
- data/test/workflows/secure/ws-http.t2flow +180 -0
- data/test/workflows/secure/ws-https.t2flow +180 -0
- data/test/workflows/strings.txt +10 -0
- data/test/workflows/xml_xpath.t2flow +136 -136
- data/version.yml +4 -0
- metadata +132 -34
- data/lib/t2-server/xml.rb +0 -86
data/t2-server.gemspec
ADDED
@@ -0,0 +1,112 @@
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# Generated by jeweler
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# DO NOT EDIT THIS FILE DIRECTLY
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# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
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# -*- encoding: utf-8 -*-
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Gem::Specification.new do |s|
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s.name = "t2-server"
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s.version = "0.9.0"
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s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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s.authors = ["Robert Haines"]
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s.date = "2012-03-26"
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s.description = "This gem provides access to the Taverna 2 Server REST interface from Ruby."
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s.email = ["rhaines@manchester.ac.uk"]
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s.executables = ["t2-delete-runs", "t2-run-workflow", "t2-server-info", "t2-get-output", "t2-server-admin"]
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s.extra_rdoc_files = [
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"CHANGES.rdoc",
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"LICENCE.rdoc",
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"README.rdoc"
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]
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s.files = [
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"CHANGES.rdoc",
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"LICENCE.rdoc",
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"README.rdoc",
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"Rakefile",
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"bin/t2-delete-runs",
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"bin/t2-get-output",
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"bin/t2-run-workflow",
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"bin/t2-server-admin",
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"bin/t2-server-info",
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"lib/t2-server-cli.rb",
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"lib/t2-server.rb",
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"lib/t2-server/admin.rb",
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"lib/t2-server/connection-parameters.rb",
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"lib/t2-server/connection.rb",
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"lib/t2-server/credentials.rb",
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"lib/t2-server/exceptions.rb",
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"lib/t2-server/port.rb",
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"lib/t2-server/run.rb",
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"lib/t2-server/server.rb",
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"lib/t2-server/util.rb",
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"lib/t2-server/xml/libxml.rb",
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"lib/t2-server/xml/nokogiri.rb",
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"lib/t2-server/xml/rexml.rb",
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"lib/t2-server/xml/xml.rb",
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"lib/t2server.rb",
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"test/tc_admin.rb",
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"test/tc_params.rb",
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"test/tc_perms.rb",
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"test/tc_run.rb",
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"test/tc_secure.rb",
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"test/tc_server.rb",
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"test/tc_util.rb",
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"test/ts_t2server.rb",
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"test/workflows/always_fail.t2flow",
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"test/workflows/empty_list.t2flow",
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"test/workflows/empty_list_input.baclava",
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"test/workflows/in.txt",
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"test/workflows/list_and_value.t2flow",
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"test/workflows/list_with_errors.t2flow",
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"test/workflows/pass_through.t2flow",
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"test/workflows/secure/basic-http.t2flow",
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"test/workflows/secure/basic-https.t2flow",
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"test/workflows/secure/client-https.t2flow",
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"test/workflows/secure/digest-http.t2flow",
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"test/workflows/secure/digest-https.t2flow",
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"test/workflows/secure/heater-pk.pem",
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"test/workflows/secure/user-cert.p12",
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"test/workflows/secure/ws-http.t2flow",
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"test/workflows/secure/ws-https.t2flow",
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"test/workflows/strings.txt",
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"test/workflows/xml_xpath.t2flow",
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"version.yml"
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]
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s.homepage = "http://www.taverna.org.uk/"
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s.rdoc_options = ["-N", "--tab-width=2", "--main=README.rdoc"]
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s.require_paths = ["lib"]
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s.rubygems_version = "1.8.10"
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s.summary = "Support for interacting with Taverna 2 Server."
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s.test_files = ["test/ts_t2server.rb"]
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if s.respond_to? :specification_version then
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s.specification_version = 3
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if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
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s.add_development_dependency(%q<rake>, ["~> 0.9.2"])
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s.add_development_dependency(%q<libxml-ruby>, [">= 1.1.4"])
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s.add_development_dependency(%q<nokogiri>, [">= 1.5.0"])
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s.add_development_dependency(%q<rdoc>, [">= 3.9.4"])
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s.add_development_dependency(%q<jeweler>, ["~> 1.8.3"])
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s.add_runtime_dependency(%q<taverna-baclava>, ["~> 1.0.0"])
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s.add_runtime_dependency(%q<hirb>, [">= 0.4.0"])
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else
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s.add_dependency(%q<rake>, ["~> 0.9.2"])
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s.add_dependency(%q<libxml-ruby>, [">= 1.1.4"])
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s.add_dependency(%q<nokogiri>, [">= 1.5.0"])
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s.add_dependency(%q<rdoc>, [">= 3.9.4"])
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s.add_dependency(%q<jeweler>, ["~> 1.8.3"])
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s.add_dependency(%q<taverna-baclava>, ["~> 1.0.0"])
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s.add_dependency(%q<hirb>, [">= 0.4.0"])
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end
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else
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s.add_dependency(%q<rake>, ["~> 0.9.2"])
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s.add_dependency(%q<libxml-ruby>, [">= 1.1.4"])
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s.add_dependency(%q<nokogiri>, [">= 1.5.0"])
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s.add_dependency(%q<rdoc>, [">= 3.9.4"])
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s.add_dependency(%q<jeweler>, ["~> 1.8.3"])
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s.add_dependency(%q<taverna-baclava>, ["~> 1.0.0"])
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s.add_dependency(%q<hirb>, [">= 0.4.0"])
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end
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end
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data/test/tc_admin.rb
ADDED
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# Copyright (c) 2010-2012 The University of Manchester, UK.
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#
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# All rights reserved.
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#
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# Redistribution and use in source and binary forms, with or without
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# modification, are permitted provided that the following conditions are met:
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#
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# * Redistributions of source code must retain the above copyright notice,
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# this list of conditions and the following disclaimer.
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#
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# * Redistributions in binary form must reproduce the above copyright notice,
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# this list of conditions and the following disclaimer in the documentation
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# and/or other materials provided with the distribution.
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#
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# * Neither the names of The University of Manchester nor the names of its
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# contributors may be used to endorse or promote products derived from this
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# software without specific prior written permission.
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#
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# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
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# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
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# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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# POSSIBILITY OF SUCH DAMAGE.
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#
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# Author: Robert Haines
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require 't2-server'
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class TestAdmin < Test::Unit::TestCase
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def test_admin
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T2Server::Server.new($uri, $conn_params) do |server|
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# unauthorized
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assert_raise(T2Server::AuthorizationError) do
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server.administrator(T2Server::HttpBasic.new("u", "p"))
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end
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begin
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server.administrator($creds)
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rescue T2Server::T2ServerError => e
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# ignore, just don't run more tests
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return
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end
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server.administrator($creds) do |admin|
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assert_equal(admin["allownew"].name, "allowNew")
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save = admin["allownew"].value
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admin["allownew"].value = false
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assert_equal(admin["allownew"].value, "false")
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admin["allownew"].value = save
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assert_equal(admin["allownew"].value, save)
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end
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end
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end
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end
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#
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# * Neither the names of The University of Manchester nor the names of its
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# contributors may be used to endorse or promote products derived from this
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# software without specific prior written permission.
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# software without specific prior written permission.
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# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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# Author: Robert Haines
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require 't2-server'
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require 'test/unit'
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class
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assert_equal("/dir/with/child/", dir)
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end
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def test_inplace
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assert_nil("dir/with/child".strip_path!)
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assert_not_nil("/dir/with/child".strip_path!)
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assert_not_nil("dir/with/child/".strip_path!)
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assert_not_nil("/dir/with/child/".strip_path!)
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# make sure it is stripping in place
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dir = "/dir/with/child/"
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dir.strip_path!
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assert_equal("dir/with/child", dir)
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class TestParams < Test::Unit::TestCase
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def test_params
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params = T2Server::ConnectionParameters.new
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params[:verify_peer] = true
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assert_not_nil(params[:verify_peer])
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params[:not_a_chance] = true
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assert_nil(params[:not_a_chance])
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end
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end
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data/test/tc_perms.rb
ADDED
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# Copyright (c) 2010-2012 The University of Manchester, UK.
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#
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# All rights reserved.
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#
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# Redistribution and use in source and binary forms, with or without
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# modification, are permitted provided that the following conditions are met:
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#
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# * Redistributions of source code must retain the above copyright notice,
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# this list of conditions and the following disclaimer.
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#
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# * Redistributions in binary form must reproduce the above copyright notice,
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# this list of conditions and the following disclaimer in the documentation
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# and/or other materials provided with the distribution.
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#
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# * Neither the names of The University of Manchester nor the names of its
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# contributors may be used to endorse or promote products derived from this
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# software without specific prior written permission.
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#
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# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
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# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
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# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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# POSSIBILITY OF SUCH DAMAGE.
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#
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# Author: Robert Haines
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require 't2-server'
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class TestPermissions < Test::Unit::TestCase
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def test_ownership
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server = T2Server::Server.new($uri, $conn_params)
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server.create_run($wkf_pass, $creds) do |run|
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assert(run.owner?)
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assert_equal(run.owner, $creds.username)
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run.grant_permission($creds1.username, :read)
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run_id = run.identifier
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run1 = server.run(run_id, $creds1)
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assert(!run1.owner?)
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assert_not_equal(run1.owner, $creds1.username)
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end
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end
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def test_read_permission
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server = T2Server::Server.new($uri, $conn_params)
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server.create_run($wkf_pass, $creds) do |run|
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assert_nothing_raised(T2Server::AccessForbiddenError) do
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run.grant_permission($creds1.username, :read)
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end
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run_id = run.identifier
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run1 = nil
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assert_nothing_raised(T2Server::AccessForbiddenError) do
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run1 = server.run(run_id, $creds1)
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end
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assert_raise(T2Server::AccessForbiddenError) do
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run1.input_port("IN").value = "Hello, World!"
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run1.start
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end
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|
+
run.input_port("IN").value = "Hello, World!"
|
74
|
+
run.start
|
75
|
+
run.wait
|
76
|
+
|
77
|
+
assert_nothing_raised(T2Server::AccessForbiddenError) do
|
78
|
+
run1.output_port("OUT").value
|
79
|
+
end
|
80
|
+
|
81
|
+
assert_raise(T2Server::AccessForbiddenError) do
|
82
|
+
run1.delete
|
83
|
+
end
|
84
|
+
end
|
85
|
+
end
|
86
|
+
|
87
|
+
def test_update_permission
|
88
|
+
server = T2Server::Server.new($uri, $conn_params)
|
89
|
+
|
90
|
+
server.create_run($wkf_pass, $creds) do |run|
|
91
|
+
assert_nothing_raised(T2Server::AccessForbiddenError) do
|
92
|
+
run.grant_permission($creds1.username, :update)
|
93
|
+
end
|
94
|
+
|
95
|
+
run_id = run.identifier
|
96
|
+
|
97
|
+
run1 = nil
|
98
|
+
assert_nothing_raised(T2Server::AccessForbiddenError) do
|
99
|
+
run1 = server.run(run_id, $creds1)
|
100
|
+
run1.input_port("IN").value = "Hello, World!"
|
101
|
+
run1.start
|
102
|
+
run1.wait
|
103
|
+
run1.output_port("OUT").value
|
104
|
+
end
|
105
|
+
|
106
|
+
assert_raise(T2Server::AccessForbiddenError) do
|
107
|
+
run1.delete
|
108
|
+
end
|
109
|
+
end
|
110
|
+
end
|
111
|
+
|
112
|
+
def test_destroy_permission
|
113
|
+
server = T2Server::Server.new($uri, $conn_params)
|
114
|
+
|
115
|
+
server.create_run($wkf_pass, $creds) do |run|
|
116
|
+
assert_nothing_raised(T2Server::AccessForbiddenError) do
|
117
|
+
run.grant_permission($creds1.username, :destroy)
|
118
|
+
end
|
119
|
+
|
120
|
+
run_id = run.identifier
|
121
|
+
|
122
|
+
assert_nothing_raised(T2Server::AccessForbiddenError) do
|
123
|
+
run1 = server.run(run_id, $creds1)
|
124
|
+
run1.input_port("IN").value = "Hello, World!"
|
125
|
+
run1.start
|
126
|
+
run1.wait
|
127
|
+
run1.output_port("OUT").value
|
128
|
+
run1.delete
|
129
|
+
end
|
130
|
+
end
|
131
|
+
end
|
132
|
+
end
|
data/test/tc_run.rb
CHANGED
@@ -1,4 +1,4 @@
|
|
1
|
-
# Copyright (c) 2010
|
1
|
+
# Copyright (c) 2010-2012 The University of Manchester, UK.
|
2
2
|
#
|
3
3
|
# All rights reserved.
|
4
4
|
#
|
@@ -14,7 +14,7 @@
|
|
14
14
|
#
|
15
15
|
# * Neither the names of The University of Manchester nor the names of its
|
16
16
|
# contributors may be used to endorse or promote products derived from this
|
17
|
-
# software without specific prior written permission.
|
17
|
+
# software without specific prior written permission.
|
18
18
|
#
|
19
19
|
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
|
20
20
|
# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
|
@@ -34,93 +34,226 @@ require 't2-server'
|
|
34
34
|
|
35
35
|
class TestRun < Test::Unit::TestCase
|
36
36
|
|
37
|
-
|
38
|
-
|
37
|
+
# Test run connection
|
38
|
+
def test_run_misc
|
39
39
|
assert_nothing_raised(T2Server::ConnectionError) do
|
40
|
-
|
40
|
+
T2Server::Run.create($uri, $wkf_pass, $creds, $conn_params)
|
41
41
|
end
|
42
|
+
end
|
42
43
|
|
43
|
-
|
44
|
-
|
45
|
-
|
46
|
-
end
|
44
|
+
# Test misc run functions
|
45
|
+
def test_status_codes
|
46
|
+
T2Server::Run.create($uri, $wkf_pass, $creds, $conn_params) do |run|
|
47
47
|
|
48
|
-
|
49
|
-
|
48
|
+
# test mkdir
|
49
|
+
assert(run.mkdir("test"))
|
50
50
|
|
51
|
-
|
52
|
-
|
53
|
-
|
54
|
-
|
55
|
-
|
56
|
-
|
57
|
-
|
58
|
-
|
51
|
+
# set input, start, check state and wait
|
52
|
+
assert_nothing_raised(T2Server::AttributeNotFoundError) do
|
53
|
+
run.input_port("IN").value = "Hello, World!"
|
54
|
+
end
|
55
|
+
assert_equal(run.input_port("IN").value, "Hello, World!")
|
56
|
+
|
57
|
+
# test correct/incorrect status codes
|
58
|
+
assert_equal(run.status, :initialized)
|
59
|
+
assert_raise(T2Server::RunStateError) { run.wait }
|
60
|
+
assert_nothing_raised(T2Server::RunStateError) { run.start }
|
61
|
+
assert(run.running?)
|
62
|
+
assert_equal(run.status, :running)
|
63
|
+
assert_nothing_raised(T2Server::RunStateError) { run.wait }
|
64
|
+
assert_equal(run.status, :finished)
|
65
|
+
assert_raise(T2Server::RunStateError) { run.start }
|
66
|
+
|
67
|
+
# exitcode and output
|
68
|
+
assert_instance_of(Fixnum, run.exitcode)
|
69
|
+
assert_equal(run.output_port("OUT").value, "Hello, World!")
|
70
|
+
assert_equal(run.output_port("wrong!"), nil)
|
71
|
+
|
72
|
+
# get zip file
|
73
|
+
assert_nothing_raised(T2Server::T2ServerError) do
|
74
|
+
assert_not_equal(run.zip_output, "")
|
75
|
+
end
|
76
|
+
|
77
|
+
# deletion
|
78
|
+
assert(run.delete)
|
59
79
|
end
|
80
|
+
end
|
81
|
+
|
82
|
+
# Test run with list inputs
|
83
|
+
def test_run_list_input
|
84
|
+
T2Server::Run.create($uri, $wkf_lists, $creds, $conn_params) do |run|
|
85
|
+
many = [[["boo"]], [["", "Hello"]], [], [[], ["test"], []]]
|
86
|
+
single = [1, 2, 3, 4, 5]
|
87
|
+
single_out = single.map { |v| v.to_s } # Taverna outputs strings!
|
88
|
+
|
89
|
+
run.input_port("SINGLE_IN").value = single
|
90
|
+
run.input_port("MANY_IN").value = many
|
91
|
+
assert_nothing_raised { run.start }
|
92
|
+
assert(run.running?)
|
93
|
+
run.wait
|
60
94
|
|
61
|
-
|
62
|
-
|
63
|
-
assert_equal(@run.get_output("OUT"), "Hello, World!")
|
64
|
-
assert_raise(T2Server::AccessForbiddenError) do
|
65
|
-
@run.get_output("wrong!")
|
95
|
+
assert_equal(run.output_port("MANY").value, many)
|
96
|
+
assert_equal(run.output_port("SINGLE").value, single_out)
|
66
97
|
end
|
98
|
+
end
|
67
99
|
|
68
|
-
|
69
|
-
|
100
|
+
# Test run with a list and file input
|
101
|
+
def test_run_list_and_file
|
102
|
+
T2Server::Run.create($uri, $wkf_l_v, $creds, $conn_params) do |run|
|
103
|
+
list = ["one", 2, :three]
|
104
|
+
list_out = list.map { |v| v.to_s }
|
70
105
|
|
71
|
-
|
72
|
-
|
73
|
-
|
74
|
-
|
75
|
-
|
76
|
-
@run.wait
|
77
|
-
assert_equal(@run.get_output("nodes"), ["hello", "world"])
|
106
|
+
run.input_port("list_in").value = list
|
107
|
+
run.input_port("singleton_in").file = $file_input
|
108
|
+
assert_nothing_raised { run.start }
|
109
|
+
assert(run.running?)
|
110
|
+
run.wait
|
78
111
|
|
79
|
-
|
80
|
-
|
112
|
+
assert_equal(run.output_port("list_out").value, list_out)
|
113
|
+
assert_equal(run.output_port("singleton_out").value, "Hello, World!")
|
114
|
+
end
|
115
|
+
end
|
81
116
|
|
82
|
-
|
83
|
-
|
117
|
+
# Test run with xml input
|
118
|
+
def test_run_xml_input
|
119
|
+
T2Server::Run.create($uri, $wkf_xml, $creds, $conn_params) do |run|
|
120
|
+
run.input_port("xml").value =
|
121
|
+
"<hello><yes>hello</yes><no>everybody</no><yes>world</yes></hello>"
|
122
|
+
run.input_port("xpath").value = "//yes"
|
123
|
+
run.start
|
124
|
+
run.wait
|
125
|
+
assert_equal(run.output_port("nodes").value, ["hello", "world"])
|
84
126
|
end
|
127
|
+
end
|
85
128
|
|
86
|
-
|
87
|
-
|
88
|
-
|
89
|
-
|
129
|
+
def test_run_file_input
|
130
|
+
# run with file input
|
131
|
+
T2Server::Run.create($uri, $wkf_pass, $creds, $conn_params) do |run|
|
132
|
+
|
133
|
+
assert_nothing_raised(T2Server::AttributeNotFoundError) do
|
134
|
+
run.input_port("IN").file = $file_input
|
135
|
+
end
|
136
|
+
|
137
|
+
run.start
|
138
|
+
assert(run.running?)
|
139
|
+
assert_nothing_raised(T2Server::RunStateError) { run.wait }
|
140
|
+
assert_equal(run.output_port("OUT").value, "Hello, World!")
|
90
141
|
end
|
91
|
-
|
142
|
+
end
|
143
|
+
|
144
|
+
# Test run that returns list of lists, some empty, using baclava for input
|
145
|
+
def test_baclava_input
|
146
|
+
T2Server::Run.create($uri, $wkf_lists, $creds, $conn_params) do |run|
|
147
|
+
assert_nothing_raised(T2Server::AttributeNotFoundError) do
|
148
|
+
run.baclava_input = $list_input
|
149
|
+
end
|
92
150
|
|
93
|
-
|
94
|
-
|
95
|
-
|
96
|
-
|
151
|
+
assert_equal(run.input_ports.keys.sort, ["MANY_IN", "SINGLE_IN"])
|
152
|
+
assert_equal(run.input_port("MANY_IN").depth, 3)
|
153
|
+
assert_equal(run.input_port("SINGLE_IN").depth, 1)
|
154
|
+
assert(run.baclava_input?)
|
155
|
+
assert(run.input_port("SINGLE_IN").baclava?)
|
156
|
+
assert(run.input_port("SINGLE_IN").set?)
|
157
|
+
|
158
|
+
run.start
|
159
|
+
assert(run.running?)
|
160
|
+
assert_nothing_raised(T2Server::RunStateError) { run.wait }
|
161
|
+
assert_equal(run.output_ports.keys.sort, ["MANY", "SINGLE"])
|
162
|
+
assert_equal(run.output_port("SINGLE").value, [])
|
163
|
+
assert_equal(run.output_port("MANY").value,
|
164
|
+
[[["boo"]], [["", "Hello"]], [], [[], ["test"], []]])
|
165
|
+
assert_equal(run.output_port("MANY").total_size, 12)
|
166
|
+
assert_equal(run.output_port("MANY")[1][0][1].value(1..3), "ell")
|
167
|
+
assert_raise(NoMethodError) { run.output_port("SINGLE")[0].value }
|
97
168
|
end
|
98
|
-
|
99
|
-
|
100
|
-
|
101
|
-
|
102
|
-
|
169
|
+
end
|
170
|
+
|
171
|
+
# Test run with baclava output
|
172
|
+
def test_baclava_output
|
173
|
+
T2Server::Run.create($uri, $wkf_pass, $creds, $conn_params) do |run|
|
174
|
+
run.input_port("IN").value = "Some input..."
|
175
|
+
assert_nothing_raised(T2Server::AttributeNotFoundError) do
|
176
|
+
run.request_baclava_output
|
177
|
+
end
|
178
|
+
assert(run.baclava_output?)
|
179
|
+
|
180
|
+
run.start
|
181
|
+
assert(run.running?)
|
182
|
+
assert_nothing_raised(T2Server::RunStateError) { run.wait }
|
183
|
+
|
184
|
+
assert_nothing_raised(T2Server::AccessForbiddenError) do
|
185
|
+
output = run.baclava_output
|
186
|
+
end
|
103
187
|
end
|
104
|
-
|
105
|
-
|
106
|
-
|
107
|
-
|
108
|
-
|
109
|
-
|
110
|
-
|
111
|
-
|
112
|
-
|
113
|
-
|
188
|
+
end
|
189
|
+
|
190
|
+
# Test partial result download
|
191
|
+
def test_result_download
|
192
|
+
T2Server::Run.create($uri, $wkf_pass, $creds, $conn_params) do |run|
|
193
|
+
assert_nothing_raised(T2Server::AttributeNotFoundError) do
|
194
|
+
file = run.upload_file($file_strs)
|
195
|
+
run.input_port("IN").remote_file = file
|
196
|
+
end
|
197
|
+
|
198
|
+
run.start
|
199
|
+
run.wait
|
200
|
+
|
201
|
+
# get total data size (without downloading the data)
|
202
|
+
assert_equal(run.output_port("OUT").total_size, 100)
|
203
|
+
assert_equal(run.output_port("OUT").size, 100)
|
204
|
+
|
205
|
+
# no data downloaded yet
|
206
|
+
assert(run.output_port("OUT").value(:debug).nil?)
|
207
|
+
|
208
|
+
# get just the first 10 bytes
|
209
|
+
assert_equal(run.output_port("OUT").value(0...10),
|
210
|
+
"123456789\n")
|
211
|
+
|
212
|
+
# get a bad range - should return the first 10 bytes
|
213
|
+
assert_equal(run.output_port("OUT").value(-10...10),
|
214
|
+
"123456789\n")
|
215
|
+
|
216
|
+
# confirm only the first 10 bytes have been downloaded
|
217
|
+
assert_equal(run.output_port("OUT").value(:debug),
|
218
|
+
"123456789\n")
|
219
|
+
|
220
|
+
# ask for a separate 10 byte range
|
221
|
+
assert_equal(run.output_port("OUT").value(20...30),
|
222
|
+
"323456789\n")
|
223
|
+
|
224
|
+
# confirm that enough was downloaded to connect the two ranges
|
225
|
+
assert_equal(run.output_port("OUT").value(:debug),
|
226
|
+
"123456789\n223456789\n323456789\n")
|
227
|
+
|
228
|
+
# ask for a range that we already have
|
229
|
+
assert_equal(run.output_port("OUT").value(5..25),
|
230
|
+
"6789\n223456789\n323456")
|
231
|
+
|
232
|
+
# confirm that no more has actually been downloaded
|
233
|
+
assert_equal(run.output_port("OUT").value(:debug),
|
234
|
+
"123456789\n223456789\n323456789\n")
|
235
|
+
|
236
|
+
# now get the lot and check its size
|
237
|
+
out = run.output_port("OUT").value
|
238
|
+
assert_equal(out.length, 100)
|
114
239
|
end
|
240
|
+
end
|
115
241
|
|
116
|
-
|
117
|
-
|
118
|
-
|
119
|
-
|
242
|
+
# test error handling
|
243
|
+
def test_always_fail
|
244
|
+
T2Server::Run.create($uri, $wkf_fail, $creds, $conn_params) do |run|
|
245
|
+
run.start
|
246
|
+
run.wait
|
247
|
+
assert(run.output_port("OUT").value.nil?)
|
248
|
+
assert(run.output_port("OUT").error?)
|
120
249
|
end
|
250
|
+
end
|
121
251
|
|
122
|
-
|
123
|
-
|
252
|
+
def test_errors
|
253
|
+
T2Server::Run.create($uri, $wkf_errors, $creds, $conn_params) do |run|
|
254
|
+
run.start
|
255
|
+
run.wait
|
256
|
+
assert(run.output_port("OUT").error?)
|
124
257
|
end
|
125
258
|
end
|
126
259
|
end
|