t2-server 0.6.1 → 0.9.0

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Files changed (52) hide show
  1. data/.rvmrc +1 -0
  2. data/CHANGES.rdoc +48 -0
  3. data/LICENCE.rdoc +2 -2
  4. data/README.rdoc +245 -10
  5. data/Rakefile +108 -0
  6. data/bin/t2-delete-runs +21 -34
  7. data/bin/t2-get-output +134 -0
  8. data/bin/t2-run-workflow +121 -109
  9. data/bin/t2-server-admin +128 -0
  10. data/bin/t2-server-info +25 -38
  11. data/lib/t2-server-cli.rb +116 -0
  12. data/lib/t2-server.rb +16 -27
  13. data/lib/t2-server/admin.rb +147 -0
  14. data/lib/t2-server/connection-parameters.rb +144 -0
  15. data/lib/t2-server/connection.rb +352 -0
  16. data/lib/t2-server/credentials.rb +84 -0
  17. data/lib/t2-server/exceptions.rb +42 -21
  18. data/lib/t2-server/port.rb +472 -0
  19. data/lib/t2-server/run.rb +822 -227
  20. data/lib/t2-server/server.rb +313 -317
  21. data/lib/t2-server/util.rb +71 -0
  22. data/lib/t2-server/xml/libxml.rb +87 -0
  23. data/lib/t2-server/xml/nokogiri.rb +85 -0
  24. data/lib/t2-server/xml/rexml.rb +85 -0
  25. data/lib/t2-server/xml/xml.rb +111 -0
  26. data/lib/t2server.rb +4 -1
  27. data/t2-server.gemspec +112 -0
  28. data/test/tc_admin.rb +63 -0
  29. data/test/{tc_paths.rb → tc_params.rb} +11 -25
  30. data/test/tc_perms.rb +132 -0
  31. data/test/tc_run.rb +200 -67
  32. data/test/tc_secure.rb +191 -0
  33. data/test/tc_server.rb +25 -23
  34. data/test/tc_util.rb +74 -0
  35. data/test/ts_t2server.rb +57 -12
  36. data/test/workflows/always_fail.t2flow +69 -0
  37. data/test/workflows/list_and_value.t2flow +12 -0
  38. data/test/workflows/list_with_errors.t2flow +107 -0
  39. data/test/workflows/secure/basic-http.t2flow +74 -0
  40. data/test/workflows/secure/basic-https.t2flow +74 -0
  41. data/test/workflows/secure/client-https.t2flow +162 -0
  42. data/test/workflows/secure/digest-http.t2flow +129 -0
  43. data/test/workflows/secure/digest-https.t2flow +107 -0
  44. data/test/workflows/secure/heater-pk.pem +20 -0
  45. data/test/workflows/secure/user-cert.p12 +0 -0
  46. data/test/workflows/secure/ws-http.t2flow +180 -0
  47. data/test/workflows/secure/ws-https.t2flow +180 -0
  48. data/test/workflows/strings.txt +10 -0
  49. data/test/workflows/xml_xpath.t2flow +136 -136
  50. data/version.yml +4 -0
  51. metadata +132 -34
  52. data/lib/t2-server/xml.rb +0 -86
data/test/workflows/list_and_value.t2flow ADDED
@@ -0,0 +1,12 @@
1
+ <workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.3.0"><dataflow id="2d5f4961-acc0-43c4-989d-c0249e9695a6" role="top"><name>Workflow3</name><inputPorts><port><name>singleton_in</name><depth>0</depth><granularDepth>0</granularDepth><annotations /></port><port><name>list_in</name><depth>1</depth><granularDepth>1</granularDepth><annotations /></port></inputPorts><outputPorts><port><name>list_out</name><annotations /></port><port><name>singleton_out</name><annotations /></port></outputPorts><processors /><conditions /><datalinks><datalink><sink type="dataflow"><port>list_out</port></sink><source type="dataflow"><port>list_in</port></source></datalink><datalink><sink type="dataflow"><port>singleton_out</port></sink><source type="dataflow"><port>singleton_in</port></source></datalink></datalinks><annotations><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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+ <annotationAssertions>
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+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
5
+ <identification>2d5f4961-acc0-43c4-989d-c0249e9695a6</identification>
6
+ </annotationBean>
7
+ <date>2012-03-13 17:05:40.688 GMT</date>
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+ <creators />
9
+ <curationEventList />
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+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ </annotationAssertions>
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+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2></annotations></dataflow></workflow>
data/test/workflows/list_with_errors.t2flow ADDED
@@ -0,0 +1,107 @@
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+ <workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.3.0"><dataflow id="dd8e0c1c-588f-4a11-a2c7-f0415625cd93" role="top"><name>Workflow11</name><inputPorts /><outputPorts><port><name>OUT</name><annotations /></port></outputPorts><processors><processor><name>Sometimes_Fails</name><inputPorts><port><name>in</name><depth>0</depth></port></inputPorts><outputPorts><port><name>out</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>localworker-activity</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap><map from="in" to="in" /></inputMap><outputMap><map from="out" to="out" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns="">
2
+ <inputs>
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+ <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
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+ <name>in</name>
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+ <depth>0</depth>
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+ <mimeTypes>
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+ <string>'text/plain'</string>
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+ </mimeTypes>
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+ <handledReferenceSchemes />
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+ <translatedElementType>java.lang.String</translatedElementType>
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+ <allowsLiteralValues>true</allowsLiteralValues>
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+ </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
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+ </inputs>
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+ <outputs>
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+ <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
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+ <name>out</name>
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+ <depth>0</depth>
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+ <mimeTypes>
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+ <string>'text/plain'</string>
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+ </mimeTypes>
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+ <granularDepth>0</granularDepth>
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+ </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
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+ </outputs>
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+ <classLoaderSharing>workflow</classLoaderSharing>
25
+ <localDependencies />
26
+ <artifactDependencies />
27
+ <script>import java.util.Random;
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+
29
+ Random r = new Random();
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+
31
+ if ((r.nextInt() % 4) == 0) {
32
+ throw new RuntimeException("Fails every four runs!");
33
+ }
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+
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+ out = in;</script>
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+ <dependencies />
37
+ <localworkerName>org.embl.ebi.escience.scuflworkers.java.TestSometimesFails</localworkerName>
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+ </net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
39
+ <maxJobs>1</maxJobs>
40
+ </net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
41
+ <backoffFactor>1.0</backoffFactor>
42
+ <initialDelay>1000</initialDelay>
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+ <maxDelay>5000</maxDelay>
44
+ <maxRetries>0</maxRetries>
45
+ </net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="in" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor><processor><name>Create_Lots_Of_Strings</name><inputPorts /><outputPorts><port><name>strings</name><depth>1</depth><granularDepth>1</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>localworker-activity</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="strings" to="strings" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns="">
46
+ <inputs />
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+ <outputs>
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+ <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
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+ <name>strings</name>
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+ <depth>1</depth>
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+ <mimeTypes>
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+ <string>l('text/plain')</string>
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+ </mimeTypes>
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+ <granularDepth>1</granularDepth>
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+ </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
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+ </outputs>
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+ <classLoaderSharing>workflow</classLoaderSharing>
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+ <localDependencies />
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+ <artifactDependencies />
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+ <script>List strings = new ArrayList();
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+ for (int i = 0; i &lt; 40; i++) {
62
+ strings.add("String" + i);
63
+ }
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+ </script>
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+ <dependencies />
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+ <localworkerName>org.embl.ebi.escience.scuflworkers.java.EmitLotsOfStrings</localworkerName>
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+ </net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
68
+ <maxJobs>1</maxJobs>
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+ </net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
70
+ <backoffFactor>1.0</backoffFactor>
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+ <initialDelay>1000</initialDelay>
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+ <maxDelay>5000</maxDelay>
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+ <maxRetries>0</maxRetries>
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+ </net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy /></iteration></iterationStrategyStack></processor></processors><conditions /><datalinks><datalink><sink type="processor"><processor>Sometimes_Fails</processor><port>in</port></sink><source type="processor"><processor>Create_Lots_Of_Strings</processor><port>strings</port></source></datalink><datalink><sink type="dataflow"><port>OUT</port></sink><source type="processor"><processor>Sometimes_Fails</processor><port>out</port></source></datalink></datalinks><annotations><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
75
+ <annotationAssertions>
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+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
77
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
78
+ <identification>dd8e0c1c-588f-4a11-a2c7-f0415625cd93</identification>
79
+ </annotationBean>
80
+ <date>2011-08-11 17:56:40.226 BST</date>
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+ <creators />
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+ <curationEventList />
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+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ </annotationAssertions>
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+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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+ <annotationAssertions>
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+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
88
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
89
+ <identification>22d97b56-800c-4a76-b3ec-c9e26298cda6</identification>
90
+ </annotationBean>
91
+ <date>2011-08-01 14:43:36.713 BST</date>
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+ <creators />
93
+ <curationEventList />
94
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ </annotationAssertions>
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+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
97
+ <annotationAssertions>
98
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
99
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
100
+ <identification>e365424c-f8a1-4ddf-9d00-b7a5e4733c10</identification>
101
+ </annotationBean>
102
+ <date>2011-08-01 14:43:11.545 BST</date>
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+ <creators />
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+ <curationEventList />
105
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ </annotationAssertions>
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+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2></annotations></dataflow></workflow>
data/test/workflows/secure/basic-http.t2flow ADDED
@@ -0,0 +1,74 @@
1
+ <workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.3-SNAPSHOT-20110621T1150"><dataflow id="6eca35ba-d7d4-43d9-8593-93eba828cc46" role="top"><name>Workflow18</name><inputPorts /><outputPorts><port><name>out</name><annotations /></port></outputPorts><processors><processor><name>Service_protected_with_Basic_AuthN</name><inputPorts /><outputPorts><port><name>responseBody</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>rest-activity</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.activities.rest.RESTActivity</class><inputMap /><outputMap><map from="responseBody" to="responseBody" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.rest.RESTActivityConfigurationBean xmlns="">
2
+ <httpMethod>GET</httpMethod>
3
+ <urlSignature>http://heater.cs.man.ac.uk:7070/examples-basic-authentication/taverna-test-page.html</urlSignature>
4
+ <acceptsHeaderValue>text/plain</acceptsHeaderValue>
5
+ <contentTypeForUpdates>application/xml</contentTypeForUpdates>
6
+ <outgoingDataFormat>String</outgoingDataFormat>
7
+ <sendHTTPExpectRequestHeader>false</sendHTTPExpectRequestHeader>
8
+ <showRedirectionOutputPort>false</showRedirectionOutputPort>
9
+ <escapeParameters>true</escapeParameters>
10
+ <otherHTTPHeaders />
11
+ <activityInputs />
12
+ </net.sf.taverna.t2.activities.rest.RESTActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
13
+ <maxJobs>1</maxJobs>
14
+ </net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
15
+ <backoffFactor>1.0</backoffFactor>
16
+ <initialDelay>1000</initialDelay>
17
+ <maxDelay>5000</maxDelay>
18
+ <maxRetries>0</maxRetries>
19
+ </net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy /></iteration></iterationStrategyStack></processor></processors><conditions /><datalinks><datalink><sink type="dataflow"><port>out</port></sink><source type="processor"><processor>Service_protected_with_Basic_AuthN</processor><port>responseBody</port></source></datalink></datalinks><annotations><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
20
+ <annotationAssertions>
21
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
22
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
23
+ <identification>837b1710-ff29-4eef-85a0-51fc76139364</identification>
24
+ </annotationBean>
25
+ <date>2010-11-22 14:15:20.380 GMT</date>
26
+ <creators />
27
+ <curationEventList />
28
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
29
+ </annotationAssertions>
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+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
31
+ <annotationAssertions>
32
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
33
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
34
+ <identification>6eca35ba-d7d4-43d9-8593-93eba828cc46</identification>
35
+ </annotationBean>
36
+ <date>2010-11-29 10:41:02.602 GMT</date>
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+ <creators />
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+ <curationEventList />
39
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ </annotationAssertions>
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+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
42
+ <annotationAssertions>
43
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
44
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
45
+ <identification>adb25995-c890-40c7-b091-2c2512024864</identification>
46
+ </annotationBean>
47
+ <date>2010-11-29 10:35:54.270 GMT</date>
48
+ <creators />
49
+ <curationEventList />
50
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
51
+ </annotationAssertions>
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+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
53
+ <annotationAssertions>
54
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
55
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
56
+ <identification>b7887959-6d6c-4466-8d15-16b4e20051db</identification>
57
+ </annotationBean>
58
+ <date>2010-11-22 14:16:43.484 GMT</date>
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+ <creators />
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+ <curationEventList />
61
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ </annotationAssertions>
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+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
64
+ <annotationAssertions>
65
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
66
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
67
+ <identification>388333c0-fd34-4571-ab0c-f67c10c2ed64</identification>
68
+ </annotationBean>
69
+ <date>2010-11-22 14:21:12.760 GMT</date>
70
+ <creators />
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+ <curationEventList />
72
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ </annotationAssertions>
74
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2></annotations></dataflow></workflow>
data/test/workflows/secure/basic-https.t2flow ADDED
@@ -0,0 +1,74 @@
1
+ <workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.3-SNAPSHOT-20110621T1150"><dataflow id="12203b36-f878-45f7-a16e-863e1bbc81b8" role="top"><name>Workflow18</name><inputPorts /><outputPorts><port><name>out</name><annotations /></port></outputPorts><processors><processor><name>Service_protected_with_Basic_AuthN_and_HTTPS</name><inputPorts /><outputPorts><port><name>responseBody</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>rest-activity</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.activities.rest.RESTActivity</class><inputMap /><outputMap><map from="responseBody" to="responseBody" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.rest.RESTActivityConfigurationBean xmlns="">
2
+ <httpMethod>GET</httpMethod>
3
+ <urlSignature>https://heater.cs.man.ac.uk:7443/examples-basic-authentication/taverna-test-page.html</urlSignature>
4
+ <acceptsHeaderValue>text/plain</acceptsHeaderValue>
5
+ <contentTypeForUpdates>application/xml</contentTypeForUpdates>
6
+ <outgoingDataFormat>String</outgoingDataFormat>
7
+ <sendHTTPExpectRequestHeader>false</sendHTTPExpectRequestHeader>
8
+ <showRedirectionOutputPort>false</showRedirectionOutputPort>
9
+ <escapeParameters>true</escapeParameters>
10
+ <otherHTTPHeaders />
11
+ <activityInputs />
12
+ </net.sf.taverna.t2.activities.rest.RESTActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
13
+ <maxJobs>1</maxJobs>
14
+ </net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
15
+ <backoffFactor>1.0</backoffFactor>
16
+ <initialDelay>1000</initialDelay>
17
+ <maxDelay>5000</maxDelay>
18
+ <maxRetries>0</maxRetries>
19
+ </net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy /></iteration></iterationStrategyStack></processor></processors><conditions /><datalinks><datalink><sink type="dataflow"><port>out</port></sink><source type="processor"><processor>Service_protected_with_Basic_AuthN_and_HTTPS</processor><port>responseBody</port></source></datalink></datalinks><annotations><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
20
+ <annotationAssertions>
21
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
22
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
23
+ <identification>adb25995-c890-40c7-b091-2c2512024864</identification>
24
+ </annotationBean>
25
+ <date>2010-11-29 10:35:54.270 GMT</date>
26
+ <creators />
27
+ <curationEventList />
28
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
29
+ </annotationAssertions>
30
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
31
+ <annotationAssertions>
32
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
33
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
34
+ <identification>12203b36-f878-45f7-a16e-863e1bbc81b8</identification>
35
+ </annotationBean>
36
+ <date>2010-11-29 15:35:51.711 GMT</date>
37
+ <creators />
38
+ <curationEventList />
39
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
40
+ </annotationAssertions>
41
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
42
+ <annotationAssertions>
43
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
44
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
45
+ <identification>837b1710-ff29-4eef-85a0-51fc76139364</identification>
46
+ </annotationBean>
47
+ <date>2010-11-22 14:15:20.380 GMT</date>
48
+ <creators />
49
+ <curationEventList />
50
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
51
+ </annotationAssertions>
52
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
53
+ <annotationAssertions>
54
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
55
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
56
+ <identification>b7887959-6d6c-4466-8d15-16b4e20051db</identification>
57
+ </annotationBean>
58
+ <date>2010-11-22 14:16:43.484 GMT</date>
59
+ <creators />
60
+ <curationEventList />
61
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
62
+ </annotationAssertions>
63
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
64
+ <annotationAssertions>
65
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
66
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
67
+ <identification>388333c0-fd34-4571-ab0c-f67c10c2ed64</identification>
68
+ </annotationBean>
69
+ <date>2010-11-22 14:21:12.760 GMT</date>
70
+ <creators />
71
+ <curationEventList />
72
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
73
+ </annotationAssertions>
74
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2></annotations></dataflow></workflow>
data/test/workflows/secure/client-https.t2flow ADDED
@@ -0,0 +1,162 @@
1
+ <workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.3-SNAPSHOT-20110623"><dataflow id="b982dcd5-dc2a-4fc5-b6dd-8d0b90a2f58e" role="top"><name>Workflow18</name><inputPorts /><outputPorts><port><name>out</name><annotations /></port></outputPorts><processors><processor><name>Service_protected_with_Client_Cert_AuthN_and_HTTPS</name><inputPorts /><outputPorts><port><name>responseBody</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>rest-activity</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.activities.rest.RESTActivity</class><inputMap /><outputMap><map from="responseBody" to="responseBody" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.rest.RESTActivityConfigurationBean xmlns="">
2
+ <httpMethod>GET</httpMethod>
3
+ <urlSignature>https://heater.cs.man.ac.uk:7444/examples-client-cert-authentication/taverna-test-page.html</urlSignature>
4
+ <acceptsHeaderValue>text/plain</acceptsHeaderValue>
5
+ <contentTypeForUpdates>application/xml</contentTypeForUpdates>
6
+ <outgoingDataFormat>String</outgoingDataFormat>
7
+ <sendHTTPExpectRequestHeader>false</sendHTTPExpectRequestHeader>
8
+ <showRedirectionOutputPort>false</showRedirectionOutputPort>
9
+ <escapeParameters>true</escapeParameters>
10
+ <otherHTTPHeaders />
11
+ <activityInputs />
12
+ </net.sf.taverna.t2.activities.rest.RESTActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
13
+ <maxJobs>1</maxJobs>
14
+ </net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
15
+ <backoffFactor>1.0</backoffFactor>
16
+ <initialDelay>1000</initialDelay>
17
+ <maxDelay>5000</maxDelay>
18
+ <maxRetries>0</maxRetries>
19
+ </net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy /></iteration></iterationStrategyStack></processor></processors><conditions /><datalinks><datalink><sink type="dataflow"><port>out</port></sink><source type="processor"><processor>Service_protected_with_Client_Cert_AuthN_and_HTTPS</processor><port>responseBody</port></source></datalink></datalinks><annotations><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
20
+ <annotationAssertions>
21
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
22
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
23
+ <identification>e7fb38b1-b3ec-4c47-a584-36c68eeda25e</identification>
24
+ </annotationBean>
25
+ <date>2010-11-22 14:19:49.664 GMT</date>
26
+ <creators />
27
+ <curationEventList />
28
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
29
+ </annotationAssertions>
30
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
31
+ <annotationAssertions>
32
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
33
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
34
+ <identification>23616693-e035-42e5-a52e-e1ddb0269d9c</identification>
35
+ </annotationBean>
36
+ <date>2011-06-21 15:49:05.979 BST</date>
37
+ <creators />
38
+ <curationEventList />
39
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
40
+ </annotationAssertions>
41
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
42
+ <annotationAssertions>
43
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
44
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
45
+ <identification>b7887959-6d6c-4466-8d15-16b4e20051db</identification>
46
+ </annotationBean>
47
+ <date>2010-11-22 14:16:43.484 GMT</date>
48
+ <creators />
49
+ <curationEventList />
50
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
51
+ </annotationAssertions>
52
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
53
+ <annotationAssertions>
54
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
55
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
56
+ <identification>47ad844e-df8e-4c65-803a-8a20c8197e8e</identification>
57
+ </annotationBean>
58
+ <date>2010-11-29 15:36:29.390 GMT</date>
59
+ <creators />
60
+ <curationEventList />
61
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
62
+ </annotationAssertions>
63
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
64
+ <annotationAssertions>
65
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
67
+ <identification>837b1710-ff29-4eef-85a0-51fc76139364</identification>
68
+ </annotationBean>
69
+ <date>2010-11-22 14:15:20.380 GMT</date>
70
+ <creators />
71
+ <curationEventList />
72
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
73
+ </annotationAssertions>
74
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
75
+ <annotationAssertions>
76
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
77
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
78
+ <identification>18b60848-4715-4532-b50c-45539ca00b44</identification>
79
+ </annotationBean>
80
+ <date>2011-06-21 16:24:23.704 BST</date>
81
+ <creators />
82
+ <curationEventList />
83
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
84
+ </annotationAssertions>
85
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
86
+ <annotationAssertions>
87
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
88
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
89
+ <identification>1f90ea89-a32f-41c1-b30c-2a5afd622984</identification>
90
+ </annotationBean>
91
+ <date>2010-11-22 14:20:41.517 GMT</date>
92
+ <creators />
93
+ <curationEventList />
94
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
95
+ </annotationAssertions>
96
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
97
+ <annotationAssertions>
98
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
100
+ <identification>5b302294-d370-4639-acb1-2a8452cc6d92</identification>
101
+ </annotationBean>
102
+ <date>2010-11-29 10:34:55.185 GMT</date>
103
+ <creators />
104
+ <curationEventList />
105
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
106
+ </annotationAssertions>
107
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
108
+ <annotationAssertions>
109
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
110
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
111
+ <identification>eaff435f-9025-429b-9a12-97fc94d90e73</identification>
112
+ </annotationBean>
113
+ <date>2010-11-22 14:18:46.551 GMT</date>
114
+ <creators />
115
+ <curationEventList />
116
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
117
+ </annotationAssertions>
118
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
119
+ <annotationAssertions>
120
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
121
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
122
+ <identification>d9be6132-9d40-43f6-bd0b-8d29dca1163b</identification>
123
+ </annotationBean>
124
+ <date>2010-11-22 14:16:58.860 GMT</date>
125
+ <creators />
126
+ <curationEventList />
127
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
128
+ </annotationAssertions>
129
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
130
+ <annotationAssertions>
131
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
132
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
133
+ <identification>b982dcd5-dc2a-4fc5-b6dd-8d0b90a2f58e</identification>
134
+ </annotationBean>
135
+ <date>2011-06-21 16:36:50.208 BST</date>
136
+ <creators />
137
+ <curationEventList />
138
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
139
+ </annotationAssertions>
140
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
141
+ <annotationAssertions>
142
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
143
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
144
+ <identification>b982dcd5-dc2a-4fc5-b6dd-8d0b90a2f58e</identification>
145
+ </annotationBean>
146
+ <date>2011-06-23 11:14:45.626 BST</date>
147
+ <creators />
148
+ <curationEventList />
149
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
150
+ </annotationAssertions>
151
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
152
+ <annotationAssertions>
153
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
154
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
155
+ <identification>06a9fa6d-ba8d-4045-945b-a4a259a275e4</identification>
156
+ </annotationBean>
157
+ <date>2011-06-23 11:13:58.558 BST</date>
158
+ <creators />
159
+ <curationEventList />
160
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
161
+ </annotationAssertions>
162
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2></annotations></dataflow></workflow>
data/test/workflows/secure/digest-http.t2flow ADDED
@@ -0,0 +1,129 @@
1
+ <workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.3-SNAPSHOT-20110621T1150"><dataflow id="a218f0b5-b675-4eed-b7a8-a5c63181ff3e" role="top"><name>Workflow18</name><inputPorts /><outputPorts><port><name>out</name><annotations /></port></outputPorts><processors><processor><name>Service_protected_with_Digest_AuthN</name><inputPorts /><outputPorts><port><name>responseBody</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>rest-activity</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.activities.rest.RESTActivity</class><inputMap /><outputMap><map from="responseBody" to="responseBody" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.rest.RESTActivityConfigurationBean xmlns="">
2
+ <httpMethod>GET</httpMethod>
3
+ <urlSignature>http://heater.cs.man.ac.uk:7070/examples-digest-authentication/taverna-test-page.html</urlSignature>
4
+ <acceptsHeaderValue>text/plain</acceptsHeaderValue>
5
+ <contentTypeForUpdates>application/xml</contentTypeForUpdates>
6
+ <outgoingDataFormat>String</outgoingDataFormat>
7
+ <sendHTTPExpectRequestHeader>false</sendHTTPExpectRequestHeader>
8
+ <showRedirectionOutputPort>false</showRedirectionOutputPort>
9
+ <escapeParameters>true</escapeParameters>
10
+ <otherHTTPHeaders />
11
+ <activityInputs />
12
+ </net.sf.taverna.t2.activities.rest.RESTActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
13
+ <maxJobs>1</maxJobs>
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+ </net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
15
+ <backoffFactor>1.0</backoffFactor>
16
+ <initialDelay>1000</initialDelay>
17
+ <maxDelay>5000</maxDelay>
18
+ <maxRetries>0</maxRetries>
19
+ </net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.3-SNAPSHOT</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy /></iteration></iterationStrategyStack></processor></processors><conditions /><datalinks><datalink><sink type="dataflow"><port>out</port></sink><source type="processor"><processor>Service_protected_with_Digest_AuthN</processor><port>responseBody</port></source></datalink></datalinks><annotations><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
20
+ <annotationAssertions>
21
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
22
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
23
+ <identification>b7887959-6d6c-4466-8d15-16b4e20051db</identification>
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+ </annotationBean>
25
+ <date>2010-11-22 14:16:43.484 GMT</date>
26
+ <creators />
27
+ <curationEventList />
28
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
29
+ </annotationAssertions>
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+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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+ <annotationAssertions>
32
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
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+ <identification>d9be6132-9d40-43f6-bd0b-8d29dca1163b</identification>
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+ </annotationBean>
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+ <date>2010-11-22 14:16:58.860 GMT</date>
37
+ <creators />
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+ <curationEventList />
39
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ </annotationAssertions>
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+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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+ <annotationAssertions>
43
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
45
+ <identification>837b1710-ff29-4eef-85a0-51fc76139364</identification>
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+ </annotationBean>
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+ <date>2010-11-22 14:15:20.380 GMT</date>
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+ <creators />
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+ <curationEventList />
50
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ </annotationAssertions>
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+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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+ <annotationAssertions>
54
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
56
+ <identification>1f90ea89-a32f-41c1-b30c-2a5afd622984</identification>
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+ </annotationBean>
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+ <date>2010-11-22 14:20:41.517 GMT</date>
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+ <creators />
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+ <curationEventList />
61
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ </annotationAssertions>
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+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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+ <annotationAssertions>
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+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
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+ <identification>e7fb38b1-b3ec-4c47-a584-36c68eeda25e</identification>
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+ </annotationBean>
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+ <date>2010-11-22 14:19:49.664 GMT</date>
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+ <creators />
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+ <curationEventList />
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+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ </annotationAssertions>
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+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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+ <annotationAssertions>
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+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
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+ <identification>eaff435f-9025-429b-9a12-97fc94d90e73</identification>
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+ </annotationBean>
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+ <date>2010-11-22 14:18:46.551 GMT</date>
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+ <creators />
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+ <curationEventList />
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+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ </annotationAssertions>
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+ <annotationAssertions>
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+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
89
+ <identification>5b302294-d370-4639-acb1-2a8452cc6d92</identification>
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+ </annotationBean>
91
+ <date>2010-11-29 10:34:55.185 GMT</date>
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+ <creators />
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+ <curationEventList />
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+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ </annotationAssertions>
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+ <annotationAssertions>
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+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
100
+ <identification>fd59d61c-50f8-457b-a183-c162453b026b</identification>
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+ </annotationBean>
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+ <date>2010-11-29 15:29:08.570 GMT</date>
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+ <creators />
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+ <curationEventList />
105
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ </annotationAssertions>
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+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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+ <annotationAssertions>
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+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
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+ <identification>435023d5-0063-4914-ae4c-28a7a031ec0d</identification>
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+ </annotationBean>
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+ <date>2010-11-29 10:40:30.468 GMT</date>
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+ <creators />
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+ <curationEventList />
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+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ </annotationAssertions>
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+ <annotationAssertions>
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+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
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+ <identification>a218f0b5-b675-4eed-b7a8-a5c63181ff3e</identification>
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+ </annotationBean>
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+ <date>2010-11-29 15:39:35.589 GMT</date>
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+ <creators />
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+ <curationEventList />
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+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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+ </annotationAssertions>
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+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2></annotations></dataflow></workflow>