t2-server 0.6.1 → 0.9.0
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- data/.rvmrc +1 -0
- data/CHANGES.rdoc +48 -0
- data/LICENCE.rdoc +2 -2
- data/README.rdoc +245 -10
- data/Rakefile +108 -0
- data/bin/t2-delete-runs +21 -34
- data/bin/t2-get-output +134 -0
- data/bin/t2-run-workflow +121 -109
- data/bin/t2-server-admin +128 -0
- data/bin/t2-server-info +25 -38
- data/lib/t2-server-cli.rb +116 -0
- data/lib/t2-server.rb +16 -27
- data/lib/t2-server/admin.rb +147 -0
- data/lib/t2-server/connection-parameters.rb +144 -0
- data/lib/t2-server/connection.rb +352 -0
- data/lib/t2-server/credentials.rb +84 -0
- data/lib/t2-server/exceptions.rb +42 -21
- data/lib/t2-server/port.rb +472 -0
- data/lib/t2-server/run.rb +822 -227
- data/lib/t2-server/server.rb +313 -317
- data/lib/t2-server/util.rb +71 -0
- data/lib/t2-server/xml/libxml.rb +87 -0
- data/lib/t2-server/xml/nokogiri.rb +85 -0
- data/lib/t2-server/xml/rexml.rb +85 -0
- data/lib/t2-server/xml/xml.rb +111 -0
- data/lib/t2server.rb +4 -1
- data/t2-server.gemspec +112 -0
- data/test/tc_admin.rb +63 -0
- data/test/{tc_paths.rb → tc_params.rb} +11 -25
- data/test/tc_perms.rb +132 -0
- data/test/tc_run.rb +200 -67
- data/test/tc_secure.rb +191 -0
- data/test/tc_server.rb +25 -23
- data/test/tc_util.rb +74 -0
- data/test/ts_t2server.rb +57 -12
- data/test/workflows/always_fail.t2flow +69 -0
- data/test/workflows/list_and_value.t2flow +12 -0
- data/test/workflows/list_with_errors.t2flow +107 -0
- data/test/workflows/secure/basic-http.t2flow +74 -0
- data/test/workflows/secure/basic-https.t2flow +74 -0
- data/test/workflows/secure/client-https.t2flow +162 -0
- data/test/workflows/secure/digest-http.t2flow +129 -0
- data/test/workflows/secure/digest-https.t2flow +107 -0
- data/test/workflows/secure/heater-pk.pem +20 -0
- data/test/workflows/secure/user-cert.p12 +0 -0
- data/test/workflows/secure/ws-http.t2flow +180 -0
- data/test/workflows/secure/ws-https.t2flow +180 -0
- data/test/workflows/strings.txt +10 -0
- data/test/workflows/xml_xpath.t2flow +136 -136
- data/version.yml +4 -0
- metadata +132 -34
- data/lib/t2-server/xml.rb +0 -86
data/lib/t2-server/xml.rb
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# Copyright (c) 2010, 2011 The University of Manchester, UK.
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#
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# All rights reserved.
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#
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# Redistribution and use in source and binary forms, with or without
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# modification, are permitted provided that the following conditions are met:
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#
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# * Redistributions of source code must retain the above copyright notice,
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# this list of conditions and the following disclaimer.
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#
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# * Redistributions in binary form must reproduce the above copyright notice,
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# this list of conditions and the following disclaimer in the documentation
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# and/or other materials provided with the distribution.
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#
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# * Neither the names of The University of Manchester nor the names of its
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# contributors may be used to endorse or promote products derived from this
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# software without specific prior written permission.
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#
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# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
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# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
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# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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# POSSIBILITY OF SUCH DAMAGE.
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#
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# Author: Robert Haines
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require 'rubygems'
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require 'libxml'
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module T2Server
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# :stopdoc:
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module Namespaces
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SERVER = "http://ns.taverna.org.uk/2010/xml/server/"
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REST = SERVER + "rest/"
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MAP = {
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"nss" => Namespaces::SERVER,
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"nsr" => Namespaces::REST
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}
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end
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module Fragments
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WORKFLOW = "<t2s:workflow xmlns:t2s=\"#{Namespaces::SERVER}\">\n %s\n</t2s:workflow>"
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RUNINPUT = "<t2sr:runInput xmlns:t2sr=\"#{Namespaces::REST}\">\n %s\n</t2sr:runInput>"
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RUNINPUTVALUE = RUNINPUT % "<t2sr:value>%s</t2sr:value>"
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RUNINPUTFILE = RUNINPUT % "<t2sr:file>%s</t2sr:file>"
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UPLOAD = "<t2sr:upload xmlns:t2sr=\"#{Namespaces::REST}\" t2sr:name=\"%s\">\n %s\n</t2sr:upload>"
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MKDIR = "<t2sr:mkdir xmlns:t2sr=\"#{Namespaces::REST}\" t2sr:name=\"%s\" />"
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end
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module XPaths
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include LibXML
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# Shut the libxml error handler up
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XML::Error.set_handler(&XML::Error::QUIET_HANDLER)
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# Server XPath queries
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RUN = XML::XPath::Expression.new("//nsr:run")
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RUNS = XML::XPath::Expression.new("//nsr:runs")
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RUNLIMIT = XML::XPath::Expression.new("//nsr:runLimit")
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PERMWKF = XML::XPath::Expression.new("//nsr:permittedWorkflows")
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PERMLSTN = XML::XPath::Expression.new("//nsr:permittedListeners")
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# Run XPath queries
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DIR = XML::XPath::Expression.new("//nss:dir")
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FILE = XML::XPath::Expression.new("//nss:file")
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EXPIRY = XML::XPath::Expression.new("//nsr:expiry")
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WORKFLOW = XML::XPath::Expression.new("//nsr:creationWorkflow")
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STATUS = XML::XPath::Expression.new("//nsr:status")
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CREATETIME = XML::XPath::Expression.new("//nsr:createTime")
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STARTTIME = XML::XPath::Expression.new("//nsr:startTime")
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FINISHTIME = XML::XPath::Expression.new("//nsr:finishTime")
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WDIR = XML::XPath::Expression.new("//nsr:workingDirectory")
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INPUTS = XML::XPath::Expression.new("//nsr:inputs")
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OUTPUT = XML::XPath::Expression.new("//nsr:output")
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SECURECTX = XML::XPath::Expression.new("//nsr:securityContext")
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LISTENERS = XML::XPath::Expression.new("//nsr:listeners")
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BACLAVA = XML::XPath::Expression.new("//nsr:baclava")
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end
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# :startdoc:
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end
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