t2-server 0.6.1 → 0.9.0

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Files changed (52) hide show
  1. data/.rvmrc +1 -0
  2. data/CHANGES.rdoc +48 -0
  3. data/LICENCE.rdoc +2 -2
  4. data/README.rdoc +245 -10
  5. data/Rakefile +108 -0
  6. data/bin/t2-delete-runs +21 -34
  7. data/bin/t2-get-output +134 -0
  8. data/bin/t2-run-workflow +121 -109
  9. data/bin/t2-server-admin +128 -0
  10. data/bin/t2-server-info +25 -38
  11. data/lib/t2-server-cli.rb +116 -0
  12. data/lib/t2-server.rb +16 -27
  13. data/lib/t2-server/admin.rb +147 -0
  14. data/lib/t2-server/connection-parameters.rb +144 -0
  15. data/lib/t2-server/connection.rb +352 -0
  16. data/lib/t2-server/credentials.rb +84 -0
  17. data/lib/t2-server/exceptions.rb +42 -21
  18. data/lib/t2-server/port.rb +472 -0
  19. data/lib/t2-server/run.rb +822 -227
  20. data/lib/t2-server/server.rb +313 -317
  21. data/lib/t2-server/util.rb +71 -0
  22. data/lib/t2-server/xml/libxml.rb +87 -0
  23. data/lib/t2-server/xml/nokogiri.rb +85 -0
  24. data/lib/t2-server/xml/rexml.rb +85 -0
  25. data/lib/t2-server/xml/xml.rb +111 -0
  26. data/lib/t2server.rb +4 -1
  27. data/t2-server.gemspec +112 -0
  28. data/test/tc_admin.rb +63 -0
  29. data/test/{tc_paths.rb → tc_params.rb} +11 -25
  30. data/test/tc_perms.rb +132 -0
  31. data/test/tc_run.rb +200 -67
  32. data/test/tc_secure.rb +191 -0
  33. data/test/tc_server.rb +25 -23
  34. data/test/tc_util.rb +74 -0
  35. data/test/ts_t2server.rb +57 -12
  36. data/test/workflows/always_fail.t2flow +69 -0
  37. data/test/workflows/list_and_value.t2flow +12 -0
  38. data/test/workflows/list_with_errors.t2flow +107 -0
  39. data/test/workflows/secure/basic-http.t2flow +74 -0
  40. data/test/workflows/secure/basic-https.t2flow +74 -0
  41. data/test/workflows/secure/client-https.t2flow +162 -0
  42. data/test/workflows/secure/digest-http.t2flow +129 -0
  43. data/test/workflows/secure/digest-https.t2flow +107 -0
  44. data/test/workflows/secure/heater-pk.pem +20 -0
  45. data/test/workflows/secure/user-cert.p12 +0 -0
  46. data/test/workflows/secure/ws-http.t2flow +180 -0
  47. data/test/workflows/secure/ws-https.t2flow +180 -0
  48. data/test/workflows/strings.txt +10 -0
  49. data/test/workflows/xml_xpath.t2flow +136 -136
  50. data/version.yml +4 -0
  51. metadata +132 -34
  52. data/lib/t2-server/xml.rb +0 -86
data/lib/t2-server/xml.rb DELETED
@@ -1,86 +0,0 @@
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- # Copyright (c) 2010, 2011 The University of Manchester, UK.
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- #
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- # All rights reserved.
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- #
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- # Redistribution and use in source and binary forms, with or without
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- # modification, are permitted provided that the following conditions are met:
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- #
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- # * Redistributions of source code must retain the above copyright notice,
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- # this list of conditions and the following disclaimer.
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- #
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- # * Redistributions in binary form must reproduce the above copyright notice,
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- # this list of conditions and the following disclaimer in the documentation
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- # and/or other materials provided with the distribution.
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- #
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- # * Neither the names of The University of Manchester nor the names of its
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- # contributors may be used to endorse or promote products derived from this
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- # software without specific prior written permission.
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- #
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- # THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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- # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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- # IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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- # ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
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- # LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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- # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
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- # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
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- # INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
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- # CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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- # ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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- # POSSIBILITY OF SUCH DAMAGE.
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- #
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- # Author: Robert Haines
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-
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- require 'rubygems'
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- require 'libxml'
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-
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- module T2Server
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- # :stopdoc:
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- module Namespaces
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- SERVER = "http://ns.taverna.org.uk/2010/xml/server/"
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- REST = SERVER + "rest/"
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- MAP = {
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- "nss" => Namespaces::SERVER,
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- "nsr" => Namespaces::REST
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- }
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- end
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-
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- module Fragments
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- WORKFLOW = "<t2s:workflow xmlns:t2s=\"#{Namespaces::SERVER}\">\n %s\n</t2s:workflow>"
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- RUNINPUT = "<t2sr:runInput xmlns:t2sr=\"#{Namespaces::REST}\">\n %s\n</t2sr:runInput>"
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- RUNINPUTVALUE = RUNINPUT % "<t2sr:value>%s</t2sr:value>"
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- RUNINPUTFILE = RUNINPUT % "<t2sr:file>%s</t2sr:file>"
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- UPLOAD = "<t2sr:upload xmlns:t2sr=\"#{Namespaces::REST}\" t2sr:name=\"%s\">\n %s\n</t2sr:upload>"
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- MKDIR = "<t2sr:mkdir xmlns:t2sr=\"#{Namespaces::REST}\" t2sr:name=\"%s\" />"
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- end
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-
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- module XPaths
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- include LibXML
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-
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- # Shut the libxml error handler up
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- XML::Error.set_handler(&XML::Error::QUIET_HANDLER)
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-
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- # Server XPath queries
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- RUN = XML::XPath::Expression.new("//nsr:run")
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- RUNS = XML::XPath::Expression.new("//nsr:runs")
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- RUNLIMIT = XML::XPath::Expression.new("//nsr:runLimit")
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- PERMWKF = XML::XPath::Expression.new("//nsr:permittedWorkflows")
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- PERMLSTN = XML::XPath::Expression.new("//nsr:permittedListeners")
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-
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- # Run XPath queries
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- DIR = XML::XPath::Expression.new("//nss:dir")
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- FILE = XML::XPath::Expression.new("//nss:file")
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- EXPIRY = XML::XPath::Expression.new("//nsr:expiry")
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- WORKFLOW = XML::XPath::Expression.new("//nsr:creationWorkflow")
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- STATUS = XML::XPath::Expression.new("//nsr:status")
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- CREATETIME = XML::XPath::Expression.new("//nsr:createTime")
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- STARTTIME = XML::XPath::Expression.new("//nsr:startTime")
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- FINISHTIME = XML::XPath::Expression.new("//nsr:finishTime")
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- WDIR = XML::XPath::Expression.new("//nsr:workingDirectory")
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- INPUTS = XML::XPath::Expression.new("//nsr:inputs")
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- OUTPUT = XML::XPath::Expression.new("//nsr:output")
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- SECURECTX = XML::XPath::Expression.new("//nsr:securityContext")
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- LISTENERS = XML::XPath::Expression.new("//nsr:listeners")
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- BACLAVA = XML::XPath::Expression.new("//nsr:baclava")
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- end
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- # :startdoc:
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- end