t2-server 0.6.1 → 0.9.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/.rvmrc +1 -0
- data/CHANGES.rdoc +48 -0
- data/LICENCE.rdoc +2 -2
- data/README.rdoc +245 -10
- data/Rakefile +108 -0
- data/bin/t2-delete-runs +21 -34
- data/bin/t2-get-output +134 -0
- data/bin/t2-run-workflow +121 -109
- data/bin/t2-server-admin +128 -0
- data/bin/t2-server-info +25 -38
- data/lib/t2-server-cli.rb +116 -0
- data/lib/t2-server.rb +16 -27
- data/lib/t2-server/admin.rb +147 -0
- data/lib/t2-server/connection-parameters.rb +144 -0
- data/lib/t2-server/connection.rb +352 -0
- data/lib/t2-server/credentials.rb +84 -0
- data/lib/t2-server/exceptions.rb +42 -21
- data/lib/t2-server/port.rb +472 -0
- data/lib/t2-server/run.rb +822 -227
- data/lib/t2-server/server.rb +313 -317
- data/lib/t2-server/util.rb +71 -0
- data/lib/t2-server/xml/libxml.rb +87 -0
- data/lib/t2-server/xml/nokogiri.rb +85 -0
- data/lib/t2-server/xml/rexml.rb +85 -0
- data/lib/t2-server/xml/xml.rb +111 -0
- data/lib/t2server.rb +4 -1
- data/t2-server.gemspec +112 -0
- data/test/tc_admin.rb +63 -0
- data/test/{tc_paths.rb → tc_params.rb} +11 -25
- data/test/tc_perms.rb +132 -0
- data/test/tc_run.rb +200 -67
- data/test/tc_secure.rb +191 -0
- data/test/tc_server.rb +25 -23
- data/test/tc_util.rb +74 -0
- data/test/ts_t2server.rb +57 -12
- data/test/workflows/always_fail.t2flow +69 -0
- data/test/workflows/list_and_value.t2flow +12 -0
- data/test/workflows/list_with_errors.t2flow +107 -0
- data/test/workflows/secure/basic-http.t2flow +74 -0
- data/test/workflows/secure/basic-https.t2flow +74 -0
- data/test/workflows/secure/client-https.t2flow +162 -0
- data/test/workflows/secure/digest-http.t2flow +129 -0
- data/test/workflows/secure/digest-https.t2flow +107 -0
- data/test/workflows/secure/heater-pk.pem +20 -0
- data/test/workflows/secure/user-cert.p12 +0 -0
- data/test/workflows/secure/ws-http.t2flow +180 -0
- data/test/workflows/secure/ws-https.t2flow +180 -0
- data/test/workflows/strings.txt +10 -0
- data/test/workflows/xml_xpath.t2flow +136 -136
- data/version.yml +4 -0
- metadata +132 -34
- data/lib/t2-server/xml.rb +0 -86
@@ -1,137 +1,137 @@
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<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.2.0"><dataflow id="bac27078-6e26-48b0-a127-56146f1eff2b" role="top"><name>Workflow1</name><inputPorts><port><name>xml</name><depth>0</depth><granularDepth>0</granularDepth><annotations /></port><port><name>xpath</name><depth>0</depth><granularDepth>0</granularDepth><annotations /></port></inputPorts><outputPorts><port><name>nodes</name><annotations /></port><port><name>xml_nodes</name><annotations /></port></outputPorts><processors><processor><name>get_element</name><inputPorts><port><name>xml-text</name><depth>0</depth></port><port><name>xpath</name><depth>0</depth></port></inputPorts><outputPorts><port><name>nodelist</name><depth>1</depth><granularDepth>1</granularDepth></port><port><name>nodelistAsXML</name><depth>1</depth><granularDepth>1</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>localworker-activity</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap><map from="xml-text" to="xml-text" /><map from="xpath" to="xpath" /></inputMap><outputMap><map from="nodelistAsXML" to="nodelistAsXML" /><map from="nodelist" to="nodelist" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns="">
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<localworkerName>net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker</localworkerName>
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<script>import org.dom4j.Document;
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import org.dom4j.Node;
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import org.dom4j.io.SAXReader;
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Document document = reader.read(new StringReader(xmltext));
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List nodelist = document.selectNodes(xpath);
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}
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}
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List nodelistAsXML=outputXmlList;</script>
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<dependencies>
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<string>dom4j:dom4j:1.6</string>
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</dependencies>
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<classLoaderSharing>workflow</classLoaderSharing>
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<localDependencies />
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<artifactDependencies>
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<net.sf.taverna.raven.repository.BasicArtifact>
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<groupId>dom4j</groupId>
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<artifactId>dom4j</artifactId>
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<version>1.6</version>
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<hashCode>716010169</hashCode>
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</net.sf.taverna.raven.repository.BasicArtifact>
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</artifactDependencies>
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<inputs>
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<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
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<handledReferenceSchemes />
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<translatedElementType>java.lang.String</translatedElementType>
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<allowsLiteralValues>true</allowsLiteralValues>
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<name>xpath</name>
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<mimeTypes>
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</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
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<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
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<translatedElementType>java.lang.String</translatedElementType>
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</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
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</inputs>
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<outputs>
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<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
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<granularDepth>1</granularDepth>
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<name>nodelist</name>
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<mimeTypes>
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</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
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<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
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<granularDepth>1</granularDepth>
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<name>nodelistAsXML</name>
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<mimeTypes>
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<string>l('text/plain')</string>
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</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
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</outputs>
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</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
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<maxJobs>1</maxJobs>
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</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
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<backoffFactor>1.0</backoffFactor>
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<initialDelay>1000</initialDelay>
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<maxDelay>5000</maxDelay>
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<maxRetries>0</maxRetries>
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</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="xml-text" depth="0" /><port name="xpath" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor></processors><conditions /><datalinks><datalink><sink type="processor"><processor>get_element</processor><port>xml-text</port></sink><source type="dataflow"><port>xml</port></source></datalink><datalink><sink type="processor"><processor>get_element</processor><port>xpath</port></sink><source type="dataflow"><port>xpath</port></source></datalink><datalink><sink type="dataflow"><port>nodes</port></sink><source type="processor"><processor>get_element</processor><port>nodelist</port></source></datalink><datalink><sink type="dataflow"><port>xml_nodes</port></sink><source type="processor"><processor>get_element</processor><port>nodelistAsXML</port></source></datalink></datalinks><annotations><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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<annotationAssertions>
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<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
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<identification>bac27078-6e26-48b0-a127-56146f1eff2b</identification>
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</annotationBean>
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<date>2011-05-13 10:10:44.677 BST</date>
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<creators />
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</net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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<annotationAssertions>
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</annotationBean>
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<date>2011-05-13 10:04:40.297 BST</date>
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</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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<annotationAssertions>
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<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
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<identification>00e06598-e7fa-4509-8276-4fbee7d8e525</identification>
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</annotationBean>
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<date>2011-05-13 10:01:30.899 BST</date>
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<curationEventList />
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</annotationAssertions>
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</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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<annotationAssertions>
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<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
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<identification>082e06b0-6bfa-4287-a109-0163fa81fd9b</identification>
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</annotationBean>
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<date>2011-05-13 09:54:10.765 BST</date>
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</net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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</annotationAssertions>
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<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.2.0"><dataflow id="bac27078-6e26-48b0-a127-56146f1eff2b" role="top"><name>Workflow1</name><inputPorts><port><name>xml</name><depth>0</depth><granularDepth>0</granularDepth><annotations /></port><port><name>xpath</name><depth>0</depth><granularDepth>0</granularDepth><annotations /></port></inputPorts><outputPorts><port><name>nodes</name><annotations /></port><port><name>xml_nodes</name><annotations /></port></outputPorts><processors><processor><name>get_element</name><inputPorts><port><name>xml-text</name><depth>0</depth></port><port><name>xpath</name><depth>0</depth></port></inputPorts><outputPorts><port><name>nodelist</name><depth>1</depth><granularDepth>1</granularDepth></port><port><name>nodelistAsXML</name><depth>1</depth><granularDepth>1</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>localworker-activity</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap><map from="xml-text" to="xml-text" /><map from="xpath" to="xpath" /></inputMap><outputMap><map from="nodelistAsXML" to="nodelistAsXML" /><map from="nodelist" to="nodelist" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns="">
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<localworkerName>net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker</localworkerName>
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<script>import org.dom4j.Document;
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import org.dom4j.Node;
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SAXReader reader = new SAXReader(false);
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reader.setIncludeInternalDTDDeclarations(false);
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reader.setIncludeExternalDTDDeclarations(false);
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List nodelist = document.selectNodes(xpath);
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// Process the elements in the nodelist
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}
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}
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List nodelist=outputList;
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List nodelistAsXML=outputXmlList;</script>
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<dependencies>
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<string>dom4j:dom4j:1.6</string>
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</dependencies>
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<classLoaderSharing>workflow</classLoaderSharing>
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<localDependencies />
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<artifactDependencies>
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<net.sf.taverna.raven.repository.BasicArtifact>
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<groupId>dom4j</groupId>
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<artifactId>dom4j</artifactId>
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<version>1.6</version>
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<hashCode>716010169</hashCode>
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</net.sf.taverna.raven.repository.BasicArtifact>
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</artifactDependencies>
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<inputs>
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<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
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<handledReferenceSchemes />
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<translatedElementType>java.lang.String</translatedElementType>
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<string>'text/plain'</string>
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</mimeTypes>
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</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
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<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
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<handledReferenceSchemes />
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<translatedElementType>java.lang.String</translatedElementType>
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<allowsLiteralValues>true</allowsLiteralValues>
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<name>xml-text</name>
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<mimeTypes>
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<string>'text/xml'</string>
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</mimeTypes>
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</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
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</inputs>
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<outputs>
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<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
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<granularDepth>1</granularDepth>
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<name>nodelist</name>
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<depth>1</depth>
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<mimeTypes>
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<string>l('text/plain')</string>
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</mimeTypes>
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</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
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<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
|
78
|
+
<granularDepth>1</granularDepth>
|
79
|
+
<name>nodelistAsXML</name>
|
80
|
+
<depth>1</depth>
|
81
|
+
<mimeTypes>
|
82
|
+
<string>l('text/plain')</string>
|
83
|
+
</mimeTypes>
|
84
|
+
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
|
85
|
+
</outputs>
|
86
|
+
</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
|
87
|
+
<maxJobs>1</maxJobs>
|
88
|
+
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
|
89
|
+
<backoffFactor>1.0</backoffFactor>
|
90
|
+
<initialDelay>1000</initialDelay>
|
91
|
+
<maxDelay>5000</maxDelay>
|
92
|
+
<maxRetries>0</maxRetries>
|
93
|
+
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="xml-text" depth="0" /><port name="xpath" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor></processors><conditions /><datalinks><datalink><sink type="processor"><processor>get_element</processor><port>xml-text</port></sink><source type="dataflow"><port>xml</port></source></datalink><datalink><sink type="processor"><processor>get_element</processor><port>xpath</port></sink><source type="dataflow"><port>xpath</port></source></datalink><datalink><sink type="dataflow"><port>nodes</port></sink><source type="processor"><processor>get_element</processor><port>nodelist</port></source></datalink><datalink><sink type="dataflow"><port>xml_nodes</port></sink><source type="processor"><processor>get_element</processor><port>nodelistAsXML</port></source></datalink></datalinks><annotations><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
|
94
|
+
<annotationAssertions>
|
95
|
+
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
|
96
|
+
<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
|
97
|
+
<identification>bac27078-6e26-48b0-a127-56146f1eff2b</identification>
|
98
|
+
</annotationBean>
|
99
|
+
<date>2011-05-13 10:10:44.677 BST</date>
|
100
|
+
<creators />
|
101
|
+
<curationEventList />
|
102
|
+
</net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
|
103
|
+
</annotationAssertions>
|
104
|
+
</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
|
105
|
+
<annotationAssertions>
|
106
|
+
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
|
107
|
+
<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
|
108
|
+
<identification>221474df-64d5-4da5-bd27-244625a8bcfa</identification>
|
109
|
+
</annotationBean>
|
110
|
+
<date>2011-05-13 10:04:40.297 BST</date>
|
111
|
+
<creators />
|
112
|
+
<curationEventList />
|
113
|
+
</net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
|
114
|
+
</annotationAssertions>
|
115
|
+
</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
|
116
|
+
<annotationAssertions>
|
117
|
+
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
|
118
|
+
<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
|
119
|
+
<identification>00e06598-e7fa-4509-8276-4fbee7d8e525</identification>
|
120
|
+
</annotationBean>
|
121
|
+
<date>2011-05-13 10:01:30.899 BST</date>
|
122
|
+
<creators />
|
123
|
+
<curationEventList />
|
124
|
+
</net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
|
125
|
+
</annotationAssertions>
|
126
|
+
</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
|
127
|
+
<annotationAssertions>
|
128
|
+
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
|
129
|
+
<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
|
130
|
+
<identification>082e06b0-6bfa-4287-a109-0163fa81fd9b</identification>
|
131
|
+
</annotationBean>
|
132
|
+
<date>2011-05-13 09:54:10.765 BST</date>
|
133
|
+
<creators />
|
134
|
+
<curationEventList />
|
135
|
+
</net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
|
136
|
+
</annotationAssertions>
|
137
137
|
</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2></annotations></dataflow></workflow>
|
data/version.yml
ADDED
metadata
CHANGED
@@ -1,13 +1,13 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: t2-server
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
hash:
|
5
|
-
prerelease:
|
4
|
+
hash: 59
|
5
|
+
prerelease:
|
6
6
|
segments:
|
7
7
|
- 0
|
8
|
-
-
|
9
|
-
-
|
10
|
-
version: 0.
|
8
|
+
- 9
|
9
|
+
- 0
|
10
|
+
version: 0.9.0
|
11
11
|
platform: ruby
|
12
12
|
authors:
|
13
13
|
- Robert Haines
|
@@ -15,8 +15,7 @@ autorequire:
|
|
15
15
|
bindir: bin
|
16
16
|
cert_chain: []
|
17
17
|
|
18
|
-
date:
|
19
|
-
default_executable:
|
18
|
+
date: 2012-04-10 00:00:00 Z
|
20
19
|
dependencies:
|
21
20
|
- !ruby/object:Gem::Dependency
|
22
21
|
name: rake
|
@@ -24,14 +23,14 @@ dependencies:
|
|
24
23
|
requirement: &id001 !ruby/object:Gem::Requirement
|
25
24
|
none: false
|
26
25
|
requirements:
|
27
|
-
- -
|
26
|
+
- - ~>
|
28
27
|
- !ruby/object:Gem::Version
|
29
|
-
hash:
|
28
|
+
hash: 63
|
30
29
|
segments:
|
31
30
|
- 0
|
32
|
-
-
|
33
|
-
-
|
34
|
-
version: 0.
|
31
|
+
- 9
|
32
|
+
- 2
|
33
|
+
version: 0.9.2
|
35
34
|
type: :development
|
36
35
|
version_requirements: *id001
|
37
36
|
- !ruby/object:Gem::Dependency
|
@@ -48,12 +47,76 @@ dependencies:
|
|
48
47
|
- 1
|
49
48
|
- 4
|
50
49
|
version: 1.1.4
|
51
|
-
type: :
|
50
|
+
type: :development
|
52
51
|
version_requirements: *id002
|
53
52
|
- !ruby/object:Gem::Dependency
|
54
|
-
name:
|
53
|
+
name: nokogiri
|
55
54
|
prerelease: false
|
56
55
|
requirement: &id003 !ruby/object:Gem::Requirement
|
56
|
+
none: false
|
57
|
+
requirements:
|
58
|
+
- - ">="
|
59
|
+
- !ruby/object:Gem::Version
|
60
|
+
hash: 3
|
61
|
+
segments:
|
62
|
+
- 1
|
63
|
+
- 5
|
64
|
+
- 0
|
65
|
+
version: 1.5.0
|
66
|
+
type: :development
|
67
|
+
version_requirements: *id003
|
68
|
+
- !ruby/object:Gem::Dependency
|
69
|
+
name: rdoc
|
70
|
+
prerelease: false
|
71
|
+
requirement: &id004 !ruby/object:Gem::Requirement
|
72
|
+
none: false
|
73
|
+
requirements:
|
74
|
+
- - ">="
|
75
|
+
- !ruby/object:Gem::Version
|
76
|
+
hash: 43
|
77
|
+
segments:
|
78
|
+
- 3
|
79
|
+
- 9
|
80
|
+
- 4
|
81
|
+
version: 3.9.4
|
82
|
+
type: :development
|
83
|
+
version_requirements: *id004
|
84
|
+
- !ruby/object:Gem::Dependency
|
85
|
+
name: jeweler
|
86
|
+
prerelease: false
|
87
|
+
requirement: &id005 !ruby/object:Gem::Requirement
|
88
|
+
none: false
|
89
|
+
requirements:
|
90
|
+
- - ~>
|
91
|
+
- !ruby/object:Gem::Version
|
92
|
+
hash: 49
|
93
|
+
segments:
|
94
|
+
- 1
|
95
|
+
- 8
|
96
|
+
- 3
|
97
|
+
version: 1.8.3
|
98
|
+
type: :development
|
99
|
+
version_requirements: *id005
|
100
|
+
- !ruby/object:Gem::Dependency
|
101
|
+
name: taverna-baclava
|
102
|
+
prerelease: false
|
103
|
+
requirement: &id006 !ruby/object:Gem::Requirement
|
104
|
+
none: false
|
105
|
+
requirements:
|
106
|
+
- - ~>
|
107
|
+
- !ruby/object:Gem::Version
|
108
|
+
hash: 23
|
109
|
+
segments:
|
110
|
+
- 1
|
111
|
+
- 0
|
112
|
+
- 0
|
113
|
+
version: 1.0.0
|
114
|
+
type: :runtime
|
115
|
+
version_requirements: *id006
|
116
|
+
- !ruby/object:Gem::Dependency
|
117
|
+
name: hirb
|
118
|
+
prerelease: false
|
119
|
+
requirement: &id007 !ruby/object:Gem::Requirement
|
57
120
|
none: false
|
58
121
|
requirements:
|
59
122
|
- - ">="
|
@@ -65,42 +128,77 @@ dependencies:
|
|
65
128
|
- 0
|
66
129
|
version: 0.4.0
|
67
130
|
type: :runtime
|
68
|
-
version_requirements: *
|
131
|
+
version_requirements: *id007
|
69
132
|
description: This gem provides access to the Taverna 2 Server REST interface from Ruby.
|
70
|
-
email:
|
133
|
+
email:
|
134
|
+
- rhaines@manchester.ac.uk
|
71
135
|
executables:
|
72
136
|
- t2-delete-runs
|
73
137
|
- t2-run-workflow
|
74
138
|
- t2-server-info
|
139
|
+
- t2-get-output
|
140
|
+
- t2-server-admin
|
75
141
|
extensions: []
|
76
142
|
|
77
143
|
extra_rdoc_files:
|
78
|
-
- README.rdoc
|
79
|
-
- LICENCE.rdoc
|
80
144
|
- CHANGES.rdoc
|
145
|
+
- LICENCE.rdoc
|
146
|
+
- README.rdoc
|
81
147
|
files:
|
82
|
-
-
|
148
|
+
- .rvmrc
|
149
|
+
- CHANGES.rdoc
|
150
|
+
- LICENCE.rdoc
|
151
|
+
- README.rdoc
|
152
|
+
- Rakefile
|
83
153
|
- bin/t2-delete-runs
|
154
|
+
- bin/t2-get-output
|
84
155
|
- bin/t2-run-workflow
|
85
|
-
-
|
86
|
-
-
|
156
|
+
- bin/t2-server-admin
|
157
|
+
- bin/t2-server-info
|
158
|
+
- lib/t2-server-cli.rb
|
159
|
+
- lib/t2-server.rb
|
160
|
+
- lib/t2-server/admin.rb
|
161
|
+
- lib/t2-server/connection-parameters.rb
|
162
|
+
- lib/t2-server/connection.rb
|
163
|
+
- lib/t2-server/credentials.rb
|
87
164
|
- lib/t2-server/exceptions.rb
|
88
|
-
- lib/t2-server/
|
165
|
+
- lib/t2-server/port.rb
|
89
166
|
- lib/t2-server/run.rb
|
90
|
-
- lib/t2-server.rb
|
91
|
-
-
|
92
|
-
-
|
167
|
+
- lib/t2-server/server.rb
|
168
|
+
- lib/t2-server/util.rb
|
169
|
+
- lib/t2-server/xml/libxml.rb
|
170
|
+
- lib/t2-server/xml/nokogiri.rb
|
171
|
+
- lib/t2-server/xml/rexml.rb
|
172
|
+
- lib/t2-server/xml/xml.rb
|
173
|
+
- lib/t2server.rb
|
174
|
+
- t2-server.gemspec
|
175
|
+
- test/tc_admin.rb
|
176
|
+
- test/tc_params.rb
|
177
|
+
- test/tc_perms.rb
|
93
178
|
- test/tc_run.rb
|
94
|
-
- test/
|
95
|
-
- test/
|
179
|
+
- test/tc_secure.rb
|
180
|
+
- test/tc_server.rb
|
181
|
+
- test/tc_util.rb
|
182
|
+
- test/ts_t2server.rb
|
183
|
+
- test/workflows/always_fail.t2flow
|
96
184
|
- test/workflows/empty_list.t2flow
|
97
|
-
- test/workflows/
|
185
|
+
- test/workflows/empty_list_input.baclava
|
98
186
|
- test/workflows/in.txt
|
99
|
-
- test/
|
100
|
-
-
|
101
|
-
-
|
102
|
-
-
|
103
|
-
|
187
|
+
- test/workflows/list_and_value.t2flow
|
188
|
+
- test/workflows/list_with_errors.t2flow
|
189
|
+
- test/workflows/pass_through.t2flow
|
190
|
+
- test/workflows/secure/basic-http.t2flow
|
191
|
+
- test/workflows/secure/basic-https.t2flow
|
192
|
+
- test/workflows/secure/client-https.t2flow
|
193
|
+
- test/workflows/secure/digest-http.t2flow
|
194
|
+
- test/workflows/secure/digest-https.t2flow
|
195
|
+
- test/workflows/secure/heater-pk.pem
|
196
|
+
- test/workflows/secure/user-cert.p12
|
197
|
+
- test/workflows/secure/ws-http.t2flow
|
198
|
+
- test/workflows/secure/ws-https.t2flow
|
199
|
+
- test/workflows/strings.txt
|
200
|
+
- test/workflows/xml_xpath.t2flow
|
201
|
+
- version.yml
|
104
202
|
homepage: http://www.taverna.org.uk/
|
105
203
|
licenses: []
|
106
204
|
|
@@ -132,7 +230,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
132
230
|
requirements: []
|
133
231
|
|
134
232
|
rubyforge_project:
|
135
|
-
rubygems_version: 1.
|
233
|
+
rubygems_version: 1.8.10
|
136
234
|
signing_key:
|
137
235
|
specification_version: 3
|
138
236
|
summary: Support for interacting with Taverna 2 Server.
|