t2-server 0.6.1 → 0.9.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (52) hide show
  1. data/.rvmrc +1 -0
  2. data/CHANGES.rdoc +48 -0
  3. data/LICENCE.rdoc +2 -2
  4. data/README.rdoc +245 -10
  5. data/Rakefile +108 -0
  6. data/bin/t2-delete-runs +21 -34
  7. data/bin/t2-get-output +134 -0
  8. data/bin/t2-run-workflow +121 -109
  9. data/bin/t2-server-admin +128 -0
  10. data/bin/t2-server-info +25 -38
  11. data/lib/t2-server-cli.rb +116 -0
  12. data/lib/t2-server.rb +16 -27
  13. data/lib/t2-server/admin.rb +147 -0
  14. data/lib/t2-server/connection-parameters.rb +144 -0
  15. data/lib/t2-server/connection.rb +352 -0
  16. data/lib/t2-server/credentials.rb +84 -0
  17. data/lib/t2-server/exceptions.rb +42 -21
  18. data/lib/t2-server/port.rb +472 -0
  19. data/lib/t2-server/run.rb +822 -227
  20. data/lib/t2-server/server.rb +313 -317
  21. data/lib/t2-server/util.rb +71 -0
  22. data/lib/t2-server/xml/libxml.rb +87 -0
  23. data/lib/t2-server/xml/nokogiri.rb +85 -0
  24. data/lib/t2-server/xml/rexml.rb +85 -0
  25. data/lib/t2-server/xml/xml.rb +111 -0
  26. data/lib/t2server.rb +4 -1
  27. data/t2-server.gemspec +112 -0
  28. data/test/tc_admin.rb +63 -0
  29. data/test/{tc_paths.rb → tc_params.rb} +11 -25
  30. data/test/tc_perms.rb +132 -0
  31. data/test/tc_run.rb +200 -67
  32. data/test/tc_secure.rb +191 -0
  33. data/test/tc_server.rb +25 -23
  34. data/test/tc_util.rb +74 -0
  35. data/test/ts_t2server.rb +57 -12
  36. data/test/workflows/always_fail.t2flow +69 -0
  37. data/test/workflows/list_and_value.t2flow +12 -0
  38. data/test/workflows/list_with_errors.t2flow +107 -0
  39. data/test/workflows/secure/basic-http.t2flow +74 -0
  40. data/test/workflows/secure/basic-https.t2flow +74 -0
  41. data/test/workflows/secure/client-https.t2flow +162 -0
  42. data/test/workflows/secure/digest-http.t2flow +129 -0
  43. data/test/workflows/secure/digest-https.t2flow +107 -0
  44. data/test/workflows/secure/heater-pk.pem +20 -0
  45. data/test/workflows/secure/user-cert.p12 +0 -0
  46. data/test/workflows/secure/ws-http.t2flow +180 -0
  47. data/test/workflows/secure/ws-https.t2flow +180 -0
  48. data/test/workflows/strings.txt +10 -0
  49. data/test/workflows/xml_xpath.t2flow +136 -136
  50. data/version.yml +4 -0
  51. metadata +132 -34
  52. data/lib/t2-server/xml.rb +0 -86
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@@ -1,137 +1,137 @@
1
- <workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.2.0"><dataflow id="bac27078-6e26-48b0-a127-56146f1eff2b" role="top"><name>Workflow1</name><inputPorts><port><name>xml</name><depth>0</depth><granularDepth>0</granularDepth><annotations /></port><port><name>xpath</name><depth>0</depth><granularDepth>0</granularDepth><annotations /></port></inputPorts><outputPorts><port><name>nodes</name><annotations /></port><port><name>xml_nodes</name><annotations /></port></outputPorts><processors><processor><name>get_element</name><inputPorts><port><name>xml-text</name><depth>0</depth></port><port><name>xpath</name><depth>0</depth></port></inputPorts><outputPorts><port><name>nodelist</name><depth>1</depth><granularDepth>1</granularDepth></port><port><name>nodelistAsXML</name><depth>1</depth><granularDepth>1</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>localworker-activity</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap><map from="xml-text" to="xml-text" /><map from="xpath" to="xpath" /></inputMap><outputMap><map from="nodelistAsXML" to="nodelistAsXML" /><map from="nodelist" to="nodelist" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns="">
2
- <localworkerName>net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker</localworkerName>
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- <script>import org.dom4j.Document;
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- import org.dom4j.Node;
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- import org.dom4j.io.SAXReader;
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-
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- SAXReader reader = new SAXReader(false);
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- reader.setIncludeInternalDTDDeclarations(false);
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- reader.setIncludeExternalDTDDeclarations(false);
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-
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- Document document = reader.read(new StringReader(xmltext));
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- List nodelist = document.selectNodes(xpath);
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-
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- // Process the elements in the nodelist
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- ArrayList outputList = new ArrayList();
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- ArrayList outputXmlList = new ArrayList();
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-
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- String val = null;
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- String xmlVal = null;
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- for (Iterator iter = nodelist.iterator(); iter.hasNext();) {
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- Node element = (Node) iter.next();
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- xmlVal = element.asXML();
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- val = element.getStringValue();
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- if (val != null &amp;&amp; !val.equals("")) {
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- outputList.add(val);
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- outputXmlList.add(xmlVal);
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- }
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-
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- }
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-
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- List nodelist=outputList;
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- List nodelistAsXML=outputXmlList;</script>
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- <dependencies>
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- <string>dom4j:dom4j:1.6</string>
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- </dependencies>
36
- <classLoaderSharing>workflow</classLoaderSharing>
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- <localDependencies />
38
- <artifactDependencies>
39
- <net.sf.taverna.raven.repository.BasicArtifact>
40
- <groupId>dom4j</groupId>
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- <artifactId>dom4j</artifactId>
42
- <version>1.6</version>
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- <hashCode>716010169</hashCode>
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- </net.sf.taverna.raven.repository.BasicArtifact>
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- </artifactDependencies>
46
- <inputs>
47
- <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
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- <handledReferenceSchemes />
49
- <translatedElementType>java.lang.String</translatedElementType>
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- <allowsLiteralValues>true</allowsLiteralValues>
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- <name>xpath</name>
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- <depth>0</depth>
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- <mimeTypes>
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- <string>'text/plain'</string>
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- </mimeTypes>
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- </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
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- <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
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- <handledReferenceSchemes />
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- <translatedElementType>java.lang.String</translatedElementType>
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- <allowsLiteralValues>true</allowsLiteralValues>
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- <name>xml-text</name>
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- <depth>0</depth>
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- <mimeTypes>
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- <string>'text/xml'</string>
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- </mimeTypes>
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- </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
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- </inputs>
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- <outputs>
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- <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
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- <granularDepth>1</granularDepth>
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- <name>nodelist</name>
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- <depth>1</depth>
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- <mimeTypes>
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- <string>l('text/plain')</string>
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- </mimeTypes>
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- </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
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- <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
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- <granularDepth>1</granularDepth>
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- <name>nodelistAsXML</name>
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- <depth>1</depth>
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- <mimeTypes>
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- <string>l('text/plain')</string>
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- </mimeTypes>
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- </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
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- </outputs>
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- </net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
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- <maxJobs>1</maxJobs>
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- </net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
89
- <backoffFactor>1.0</backoffFactor>
90
- <initialDelay>1000</initialDelay>
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- <maxDelay>5000</maxDelay>
92
- <maxRetries>0</maxRetries>
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- </net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="xml-text" depth="0" /><port name="xpath" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor></processors><conditions /><datalinks><datalink><sink type="processor"><processor>get_element</processor><port>xml-text</port></sink><source type="dataflow"><port>xml</port></source></datalink><datalink><sink type="processor"><processor>get_element</processor><port>xpath</port></sink><source type="dataflow"><port>xpath</port></source></datalink><datalink><sink type="dataflow"><port>nodes</port></sink><source type="processor"><processor>get_element</processor><port>nodelist</port></source></datalink><datalink><sink type="dataflow"><port>xml_nodes</port></sink><source type="processor"><processor>get_element</processor><port>nodelistAsXML</port></source></datalink></datalinks><annotations><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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- <annotationAssertions>
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- <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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- <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
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- <identification>bac27078-6e26-48b0-a127-56146f1eff2b</identification>
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- </annotationBean>
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- <date>2011-05-13 10:10:44.677 BST</date>
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- <creators />
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- <curationEventList />
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- </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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- </annotationAssertions>
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- </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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- <annotationAssertions>
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- <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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- <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
108
- <identification>221474df-64d5-4da5-bd27-244625a8bcfa</identification>
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- </annotationBean>
110
- <date>2011-05-13 10:04:40.297 BST</date>
111
- <creators />
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- <curationEventList />
113
- </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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- </annotationAssertions>
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- </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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- <annotationAssertions>
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- <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
118
- <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
119
- <identification>00e06598-e7fa-4509-8276-4fbee7d8e525</identification>
120
- </annotationBean>
121
- <date>2011-05-13 10:01:30.899 BST</date>
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- <creators />
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- <curationEventList />
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- </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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- </annotationAssertions>
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- </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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- <annotationAssertions>
128
- <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
129
- <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
130
- <identification>082e06b0-6bfa-4287-a109-0163fa81fd9b</identification>
131
- </annotationBean>
132
- <date>2011-05-13 09:54:10.765 BST</date>
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- <creators />
134
- <curationEventList />
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- </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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- </annotationAssertions>
1
+ <workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.2.0"><dataflow id="bac27078-6e26-48b0-a127-56146f1eff2b" role="top"><name>Workflow1</name><inputPorts><port><name>xml</name><depth>0</depth><granularDepth>0</granularDepth><annotations /></port><port><name>xpath</name><depth>0</depth><granularDepth>0</granularDepth><annotations /></port></inputPorts><outputPorts><port><name>nodes</name><annotations /></port><port><name>xml_nodes</name><annotations /></port></outputPorts><processors><processor><name>get_element</name><inputPorts><port><name>xml-text</name><depth>0</depth></port><port><name>xpath</name><depth>0</depth></port></inputPorts><outputPorts><port><name>nodelist</name><depth>1</depth><granularDepth>1</granularDepth></port><port><name>nodelistAsXML</name><depth>1</depth><granularDepth>1</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>localworker-activity</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap><map from="xml-text" to="xml-text" /><map from="xpath" to="xpath" /></inputMap><outputMap><map from="nodelistAsXML" to="nodelistAsXML" /><map from="nodelist" to="nodelist" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns="">
2
+ <localworkerName>net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker</localworkerName>
3
+ <script>import org.dom4j.Document;
4
+ import org.dom4j.Node;
5
+ import org.dom4j.io.SAXReader;
6
+
7
+ SAXReader reader = new SAXReader(false);
8
+ reader.setIncludeInternalDTDDeclarations(false);
9
+ reader.setIncludeExternalDTDDeclarations(false);
10
+
11
+ Document document = reader.read(new StringReader(xmltext));
12
+ List nodelist = document.selectNodes(xpath);
13
+
14
+ // Process the elements in the nodelist
15
+ ArrayList outputList = new ArrayList();
16
+ ArrayList outputXmlList = new ArrayList();
17
+
18
+ String val = null;
19
+ String xmlVal = null;
20
+ for (Iterator iter = nodelist.iterator(); iter.hasNext();) {
21
+ Node element = (Node) iter.next();
22
+ xmlVal = element.asXML();
23
+ val = element.getStringValue();
24
+ if (val != null &amp;&amp; !val.equals("")) {
25
+ outputList.add(val);
26
+ outputXmlList.add(xmlVal);
27
+ }
28
+
29
+ }
30
+
31
+ List nodelist=outputList;
32
+ List nodelistAsXML=outputXmlList;</script>
33
+ <dependencies>
34
+ <string>dom4j:dom4j:1.6</string>
35
+ </dependencies>
36
+ <classLoaderSharing>workflow</classLoaderSharing>
37
+ <localDependencies />
38
+ <artifactDependencies>
39
+ <net.sf.taverna.raven.repository.BasicArtifact>
40
+ <groupId>dom4j</groupId>
41
+ <artifactId>dom4j</artifactId>
42
+ <version>1.6</version>
43
+ <hashCode>716010169</hashCode>
44
+ </net.sf.taverna.raven.repository.BasicArtifact>
45
+ </artifactDependencies>
46
+ <inputs>
47
+ <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
48
+ <handledReferenceSchemes />
49
+ <translatedElementType>java.lang.String</translatedElementType>
50
+ <allowsLiteralValues>true</allowsLiteralValues>
51
+ <name>xpath</name>
52
+ <depth>0</depth>
53
+ <mimeTypes>
54
+ <string>'text/plain'</string>
55
+ </mimeTypes>
56
+ </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
57
+ <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
58
+ <handledReferenceSchemes />
59
+ <translatedElementType>java.lang.String</translatedElementType>
60
+ <allowsLiteralValues>true</allowsLiteralValues>
61
+ <name>xml-text</name>
62
+ <depth>0</depth>
63
+ <mimeTypes>
64
+ <string>'text/xml'</string>
65
+ </mimeTypes>
66
+ </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
67
+ </inputs>
68
+ <outputs>
69
+ <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
70
+ <granularDepth>1</granularDepth>
71
+ <name>nodelist</name>
72
+ <depth>1</depth>
73
+ <mimeTypes>
74
+ <string>l('text/plain')</string>
75
+ </mimeTypes>
76
+ </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
77
+ <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
78
+ <granularDepth>1</granularDepth>
79
+ <name>nodelistAsXML</name>
80
+ <depth>1</depth>
81
+ <mimeTypes>
82
+ <string>l('text/plain')</string>
83
+ </mimeTypes>
84
+ </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
85
+ </outputs>
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+ </net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
87
+ <maxJobs>1</maxJobs>
88
+ </net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
89
+ <backoffFactor>1.0</backoffFactor>
90
+ <initialDelay>1000</initialDelay>
91
+ <maxDelay>5000</maxDelay>
92
+ <maxRetries>0</maxRetries>
93
+ </net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="xml-text" depth="0" /><port name="xpath" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor></processors><conditions /><datalinks><datalink><sink type="processor"><processor>get_element</processor><port>xml-text</port></sink><source type="dataflow"><port>xml</port></source></datalink><datalink><sink type="processor"><processor>get_element</processor><port>xpath</port></sink><source type="dataflow"><port>xpath</port></source></datalink><datalink><sink type="dataflow"><port>nodes</port></sink><source type="processor"><processor>get_element</processor><port>nodelist</port></source></datalink><datalink><sink type="dataflow"><port>xml_nodes</port></sink><source type="processor"><processor>get_element</processor><port>nodelistAsXML</port></source></datalink></datalinks><annotations><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
94
+ <annotationAssertions>
95
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
96
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
97
+ <identification>bac27078-6e26-48b0-a127-56146f1eff2b</identification>
98
+ </annotationBean>
99
+ <date>2011-05-13 10:10:44.677 BST</date>
100
+ <creators />
101
+ <curationEventList />
102
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
103
+ </annotationAssertions>
104
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
105
+ <annotationAssertions>
106
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
107
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
108
+ <identification>221474df-64d5-4da5-bd27-244625a8bcfa</identification>
109
+ </annotationBean>
110
+ <date>2011-05-13 10:04:40.297 BST</date>
111
+ <creators />
112
+ <curationEventList />
113
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
114
+ </annotationAssertions>
115
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
116
+ <annotationAssertions>
117
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
118
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
119
+ <identification>00e06598-e7fa-4509-8276-4fbee7d8e525</identification>
120
+ </annotationBean>
121
+ <date>2011-05-13 10:01:30.899 BST</date>
122
+ <creators />
123
+ <curationEventList />
124
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
125
+ </annotationAssertions>
126
+ </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
127
+ <annotationAssertions>
128
+ <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
129
+ <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
130
+ <identification>082e06b0-6bfa-4287-a109-0163fa81fd9b</identification>
131
+ </annotationBean>
132
+ <date>2011-05-13 09:54:10.765 BST</date>
133
+ <creators />
134
+ <curationEventList />
135
+ </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
136
+ </annotationAssertions>
137
137
  </net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2></annotations></dataflow></workflow>
data/version.yml ADDED
@@ -0,0 +1,4 @@
1
+ ---
2
+ :major: 0
3
+ :minor: 9
4
+ :patch: 0
metadata CHANGED
@@ -1,13 +1,13 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: t2-server
3
3
  version: !ruby/object:Gem::Version
4
- hash: 5
5
- prerelease: false
4
+ hash: 59
5
+ prerelease:
6
6
  segments:
7
7
  - 0
8
- - 6
9
- - 1
10
- version: 0.6.1
8
+ - 9
9
+ - 0
10
+ version: 0.9.0
11
11
  platform: ruby
12
12
  authors:
13
13
  - Robert Haines
@@ -15,8 +15,7 @@ autorequire:
15
15
  bindir: bin
16
16
  cert_chain: []
17
17
 
18
- date: 2011-05-13 00:00:00 +01:00
19
- default_executable:
18
+ date: 2012-04-10 00:00:00 Z
20
19
  dependencies:
21
20
  - !ruby/object:Gem::Dependency
22
21
  name: rake
@@ -24,14 +23,14 @@ dependencies:
24
23
  requirement: &id001 !ruby/object:Gem::Requirement
25
24
  none: false
26
25
  requirements:
27
- - - ">="
26
+ - - ~>
28
27
  - !ruby/object:Gem::Version
29
- hash: 49
28
+ hash: 63
30
29
  segments:
31
30
  - 0
32
- - 8
33
- - 7
34
- version: 0.8.7
31
+ - 9
32
+ - 2
33
+ version: 0.9.2
35
34
  type: :development
36
35
  version_requirements: *id001
37
36
  - !ruby/object:Gem::Dependency
@@ -48,12 +47,76 @@ dependencies:
48
47
  - 1
49
48
  - 4
50
49
  version: 1.1.4
51
- type: :runtime
50
+ type: :development
52
51
  version_requirements: *id002
53
52
  - !ruby/object:Gem::Dependency
54
- name: hirb
53
+ name: nokogiri
55
54
  prerelease: false
56
55
  requirement: &id003 !ruby/object:Gem::Requirement
56
+ none: false
57
+ requirements:
58
+ - - ">="
59
+ - !ruby/object:Gem::Version
60
+ hash: 3
61
+ segments:
62
+ - 1
63
+ - 5
64
+ - 0
65
+ version: 1.5.0
66
+ type: :development
67
+ version_requirements: *id003
68
+ - !ruby/object:Gem::Dependency
69
+ name: rdoc
70
+ prerelease: false
71
+ requirement: &id004 !ruby/object:Gem::Requirement
72
+ none: false
73
+ requirements:
74
+ - - ">="
75
+ - !ruby/object:Gem::Version
76
+ hash: 43
77
+ segments:
78
+ - 3
79
+ - 9
80
+ - 4
81
+ version: 3.9.4
82
+ type: :development
83
+ version_requirements: *id004
84
+ - !ruby/object:Gem::Dependency
85
+ name: jeweler
86
+ prerelease: false
87
+ requirement: &id005 !ruby/object:Gem::Requirement
88
+ none: false
89
+ requirements:
90
+ - - ~>
91
+ - !ruby/object:Gem::Version
92
+ hash: 49
93
+ segments:
94
+ - 1
95
+ - 8
96
+ - 3
97
+ version: 1.8.3
98
+ type: :development
99
+ version_requirements: *id005
100
+ - !ruby/object:Gem::Dependency
101
+ name: taverna-baclava
102
+ prerelease: false
103
+ requirement: &id006 !ruby/object:Gem::Requirement
104
+ none: false
105
+ requirements:
106
+ - - ~>
107
+ - !ruby/object:Gem::Version
108
+ hash: 23
109
+ segments:
110
+ - 1
111
+ - 0
112
+ - 0
113
+ version: 1.0.0
114
+ type: :runtime
115
+ version_requirements: *id006
116
+ - !ruby/object:Gem::Dependency
117
+ name: hirb
118
+ prerelease: false
119
+ requirement: &id007 !ruby/object:Gem::Requirement
57
120
  none: false
58
121
  requirements:
59
122
  - - ">="
@@ -65,42 +128,77 @@ dependencies:
65
128
  - 0
66
129
  version: 0.4.0
67
130
  type: :runtime
68
- version_requirements: *id003
131
+ version_requirements: *id007
69
132
  description: This gem provides access to the Taverna 2 Server REST interface from Ruby.
70
- email: rhaines@manchester.ac.uk
133
+ email:
134
+ - rhaines@manchester.ac.uk
71
135
  executables:
72
136
  - t2-delete-runs
73
137
  - t2-run-workflow
74
138
  - t2-server-info
139
+ - t2-get-output
140
+ - t2-server-admin
75
141
  extensions: []
76
142
 
77
143
  extra_rdoc_files:
78
- - README.rdoc
79
- - LICENCE.rdoc
80
144
  - CHANGES.rdoc
145
+ - LICENCE.rdoc
146
+ - README.rdoc
81
147
  files:
82
- - bin/t2-server-info
148
+ - .rvmrc
149
+ - CHANGES.rdoc
150
+ - LICENCE.rdoc
151
+ - README.rdoc
152
+ - Rakefile
83
153
  - bin/t2-delete-runs
154
+ - bin/t2-get-output
84
155
  - bin/t2-run-workflow
85
- - lib/t2server.rb
86
- - lib/t2-server/server.rb
156
+ - bin/t2-server-admin
157
+ - bin/t2-server-info
158
+ - lib/t2-server-cli.rb
159
+ - lib/t2-server.rb
160
+ - lib/t2-server/admin.rb
161
+ - lib/t2-server/connection-parameters.rb
162
+ - lib/t2-server/connection.rb
163
+ - lib/t2-server/credentials.rb
87
164
  - lib/t2-server/exceptions.rb
88
- - lib/t2-server/xml.rb
165
+ - lib/t2-server/port.rb
89
166
  - lib/t2-server/run.rb
90
- - lib/t2-server.rb
91
- - test/tc_server.rb
92
- - test/tc_paths.rb
167
+ - lib/t2-server/server.rb
168
+ - lib/t2-server/util.rb
169
+ - lib/t2-server/xml/libxml.rb
170
+ - lib/t2-server/xml/nokogiri.rb
171
+ - lib/t2-server/xml/rexml.rb
172
+ - lib/t2-server/xml/xml.rb
173
+ - lib/t2server.rb
174
+ - t2-server.gemspec
175
+ - test/tc_admin.rb
176
+ - test/tc_params.rb
177
+ - test/tc_perms.rb
93
178
  - test/tc_run.rb
94
- - test/workflows/pass_through.t2flow
95
- - test/workflows/empty_list_input.baclava
179
+ - test/tc_secure.rb
180
+ - test/tc_server.rb
181
+ - test/tc_util.rb
182
+ - test/ts_t2server.rb
183
+ - test/workflows/always_fail.t2flow
96
184
  - test/workflows/empty_list.t2flow
97
- - test/workflows/xml_xpath.t2flow
185
+ - test/workflows/empty_list_input.baclava
98
186
  - test/workflows/in.txt
99
- - test/ts_t2server.rb
100
- - README.rdoc
101
- - LICENCE.rdoc
102
- - CHANGES.rdoc
103
- has_rdoc: true
187
+ - test/workflows/list_and_value.t2flow
188
+ - test/workflows/list_with_errors.t2flow
189
+ - test/workflows/pass_through.t2flow
190
+ - test/workflows/secure/basic-http.t2flow
191
+ - test/workflows/secure/basic-https.t2flow
192
+ - test/workflows/secure/client-https.t2flow
193
+ - test/workflows/secure/digest-http.t2flow
194
+ - test/workflows/secure/digest-https.t2flow
195
+ - test/workflows/secure/heater-pk.pem
196
+ - test/workflows/secure/user-cert.p12
197
+ - test/workflows/secure/ws-http.t2flow
198
+ - test/workflows/secure/ws-https.t2flow
199
+ - test/workflows/strings.txt
200
+ - test/workflows/xml_xpath.t2flow
201
+ - version.yml
104
202
  homepage: http://www.taverna.org.uk/
105
203
  licenses: []
106
204
 
@@ -132,7 +230,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
132
230
  requirements: []
133
231
 
134
232
  rubyforge_project:
135
- rubygems_version: 1.3.7
233
+ rubygems_version: 1.8.10
136
234
  signing_key:
137
235
  specification_version: 3
138
236
  summary: Support for interacting with Taverna 2 Server.