shalmaneser 1.2.0.rc4 → 1.2.rc5
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- checksums.yaml +4 -4
- data/README.md +47 -18
- data/bin/shalmaneser +8 -2
- data/doc/index.md +1 -0
- data/lib/shalmaneser/opt_parser.rb +68 -67
- metadata +49 -119
- data/bin/fred +0 -16
- data/bin/frprep +0 -34
- data/bin/rosy +0 -17
- data/lib/common/AbstractSynInterface.rb +0 -1229
- data/lib/common/Counter.rb +0 -18
- data/lib/common/EnduserMode.rb +0 -27
- data/lib/common/Eval.rb +0 -480
- data/lib/common/FixSynSemMapping.rb +0 -196
- data/lib/common/Graph.rb +0 -345
- data/lib/common/ISO-8859-1.rb +0 -24
- data/lib/common/ML.rb +0 -186
- data/lib/common/Mallet.rb +0 -236
- data/lib/common/Maxent.rb +0 -229
- data/lib/common/Optimise.rb +0 -195
- data/lib/common/Parser.rb +0 -213
- data/lib/common/RegXML.rb +0 -269
- data/lib/common/RosyConventions.rb +0 -171
- data/lib/common/STXmlTerminalOrder.rb +0 -194
- data/lib/common/SalsaTigerRegXML.rb +0 -2347
- data/lib/common/SalsaTigerXMLHelper.rb +0 -99
- data/lib/common/SynInterfaces.rb +0 -282
- data/lib/common/TabFormat.rb +0 -721
- data/lib/common/Tiger.rb +0 -1448
- data/lib/common/Timbl.rb +0 -144
- data/lib/common/Tree.rb +0 -61
- data/lib/common/config_data.rb +0 -470
- data/lib/common/config_format_element.rb +0 -220
- data/lib/common/headz.rb +0 -338
- data/lib/common/option_parser.rb +0 -13
- data/lib/common/prep_config_data.rb +0 -62
- data/lib/common/prep_helper.rb +0 -1330
- data/lib/common/ruby_class_extensions.rb +0 -310
- data/lib/db/db_interface.rb +0 -48
- data/lib/db/db_mysql.rb +0 -145
- data/lib/db/db_sqlite.rb +0 -280
- data/lib/db/db_table.rb +0 -239
- data/lib/db/db_wrapper.rb +0 -176
- data/lib/db/sql_query.rb +0 -243
- data/lib/ext/maxent/Classify.class +0 -0
- data/lib/ext/maxent/Train.class +0 -0
- data/lib/fred/Baseline.rb +0 -150
- data/lib/fred/FileZipped.rb +0 -31
- data/lib/fred/FredBOWContext.rb +0 -877
- data/lib/fred/FredConventions.rb +0 -232
- data/lib/fred/FredDetermineTargets.rb +0 -319
- data/lib/fred/FredEval.rb +0 -312
- data/lib/fred/FredFeatureExtractors.rb +0 -322
- data/lib/fred/FredFeatures.rb +0 -1061
- data/lib/fred/FredFeaturize.rb +0 -602
- data/lib/fred/FredNumTrainingSenses.rb +0 -27
- data/lib/fred/FredParameters.rb +0 -402
- data/lib/fred/FredSplit.rb +0 -84
- data/lib/fred/FredSplitPkg.rb +0 -180
- data/lib/fred/FredTest.rb +0 -606
- data/lib/fred/FredTrain.rb +0 -144
- data/lib/fred/PlotAndREval.rb +0 -480
- data/lib/fred/fred.rb +0 -47
- data/lib/fred/fred_config_data.rb +0 -185
- data/lib/fred/md5.rb +0 -23
- data/lib/fred/opt_parser.rb +0 -250
- data/lib/frprep/Ampersand.rb +0 -39
- data/lib/frprep/CollinsInterface.rb +0 -1165
- data/lib/frprep/Counter.rb +0 -18
- data/lib/frprep/FNCorpusXML.rb +0 -643
- data/lib/frprep/FNDatabase.rb +0 -144
- data/lib/frprep/FrameXML.rb +0 -513
- data/lib/frprep/Graph.rb +0 -345
- data/lib/frprep/MiniparInterface.rb +0 -1388
- data/lib/frprep/RegXML.rb +0 -269
- data/lib/frprep/STXmlTerminalOrder.rb +0 -194
- data/lib/frprep/SleepyInterface.rb +0 -384
- data/lib/frprep/TntInterface.rb +0 -44
- data/lib/frprep/TreetaggerInterface.rb +0 -327
- data/lib/frprep/do_parses.rb +0 -143
- data/lib/frprep/frprep.rb +0 -693
- data/lib/frprep/interfaces/berkeley_interface.rb +0 -372
- data/lib/frprep/interfaces/stanford_interface.rb +0 -353
- data/lib/frprep/interpreters/berkeley_interpreter.rb +0 -22
- data/lib/frprep/interpreters/stanford_interpreter.rb +0 -22
- data/lib/frprep/one_parsed_file.rb +0 -28
- data/lib/frprep/opt_parser.rb +0 -94
- data/lib/frprep/ruby_class_extensions.rb +0 -310
- data/lib/rosy/AbstractFeatureAndExternal.rb +0 -242
- data/lib/rosy/ExternalConfigData.rb +0 -58
- data/lib/rosy/FailedParses.rb +0 -130
- data/lib/rosy/FeatureInfo.rb +0 -242
- data/lib/rosy/GfInduce.rb +0 -1115
- data/lib/rosy/GfInduceFeature.rb +0 -148
- data/lib/rosy/InputData.rb +0 -294
- data/lib/rosy/RosyConfusability.rb +0 -338
- data/lib/rosy/RosyEval.rb +0 -465
- data/lib/rosy/RosyFeatureExtractors.rb +0 -1609
- data/lib/rosy/RosyFeaturize.rb +0 -281
- data/lib/rosy/RosyInspect.rb +0 -336
- data/lib/rosy/RosyIterator.rb +0 -478
- data/lib/rosy/RosyPhase2FeatureExtractors.rb +0 -230
- data/lib/rosy/RosyPruning.rb +0 -165
- data/lib/rosy/RosyServices.rb +0 -744
- data/lib/rosy/RosySplit.rb +0 -232
- data/lib/rosy/RosyTask.rb +0 -19
- data/lib/rosy/RosyTest.rb +0 -829
- data/lib/rosy/RosyTrain.rb +0 -234
- data/lib/rosy/RosyTrainingTestTable.rb +0 -787
- data/lib/rosy/TargetsMostFrequentFrame.rb +0 -60
- data/lib/rosy/View.rb +0 -418
- data/lib/rosy/opt_parser.rb +0 -379
- data/lib/rosy/rosy.rb +0 -78
- data/lib/rosy/rosy_config_data.rb +0 -121
- data/lib/shalmaneser/version.rb +0 -3
@@ -1,60 +0,0 @@
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module TargetsMostFrequentSc
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def determine_target_most_frequent_sc(view,
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noval,
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with_frame_default = nil)
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target_subcat = Hash.new()
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frame_subcat = Hash.new()
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view.each_sentence { |sentence|
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target = tmf_target_key(sentence.first)
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frame = sentence.first["frame"]
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subcat = []
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# each instance: count individual Gf
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# add to sentencewide string
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sentence.each { |inst|
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if inst["fn_gf"] != noval and inst["fn_gf"] != "target"
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subcat << inst["fn_gf"]
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end
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} # each instance of sentence
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subcat.sort!
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subcat.uniq!
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# count sentwise GF for target
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if target_subcat[target].nil?
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target_subcat[target] = Hash.new(0)
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end
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target_subcat[target][subcat.join("_")] += 1
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# count same for frame
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if frame_subcat[frame].nil?
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frame_subcat[frame] = Hash.new(0)
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end
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frame_subcat[frame][subcat.join("_")] += 1
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} # each sentence of view
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# most frequent subcat for each target:
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retv = Hash.new()
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retv2 = Hash.new()
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[[retv, target_subcat], [retv2, frame_subcat]].each { |out_hash, in_hash|
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in_hash.each_pair { |key, subcats|
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most_frequent_subcat = subcats.to_a.max { |a,b| a.last <=> b.last }.first
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out_hash[key] = most_frequent_subcat
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}
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}
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if with_frame_default
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return [retv, retv2]
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else
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return retv
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end
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end
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def tmf_target_key(instance)
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return instance["frame"] + "." +
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instance["target"] + "." +
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instance["target_pos"]
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end
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end
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data/lib/rosy/View.rb
DELETED
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# class DBView
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# KE, SP 27.1.05
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#
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# builds on class DBTable, which offers access to a database table
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# extract views of the table (select columns, select rows)
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# and offers access methods for these views.
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# Rows of the table can be returned either as hashes or as arrays.
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#
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# There is a special column of the table (the name of which we get in the new() method),
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# the gold column.
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# It can be returned directly, or modified by some "dynamic feature object",
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# and its value (modified or unmodified) will always be last in the array representation of a row.
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require 'db/sql_query'
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require "common/ruby_class_extensions"
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require "common/RosyConventions"
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class DBView
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################
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# new
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#
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# prepare a view.
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# given a list of DB tables to access, each with its
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# set of features to be returned in the view,
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# a set of value restrictions,
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# the name of the gold feature,
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# and a list of objects that manipulate the gold feature into alternate
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# gold features.
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#
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# value_restrictions restricts the view to those rows for which the value restrictions hold,
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# e.g. only those rows where frame = Bla, or only those rows where partofspeech = Blupp
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#
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# The view remembers the indices of the _first_ table in the list of tables
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# it is given.
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#
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# A standard dynamic ID can be given: DynGold objects all have an id() method,
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# which returns a string, by which the use of the object can be requested
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# of the view. If no dynamic ID is given below in methods each_array,
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# each_hash, each_sentence, the system falls back to the standard dynamic ID.
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# if none is given here, the standard DynGold object is the one that doesn't
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# change the gold column. If one is given here, it will be used by default
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# when no ID is given in each_hash, each_array, each_sentence
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#
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# The last parameter is a hash with the following optional entries:
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# "gold":
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# string: name of the gold feature
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# If you want the gold feature to be mapped using a DynGold object,
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# you need to specify this parameter -- and you need to include
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# the gold feature in some feature_list.
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# Warning: if a feature of this name appears in several of the
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# feature lists, only the first one is mapped
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# "dynamic_feature_list":
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# array:DynGold objects, list of objects that map the gold feature
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# to a different feature value (e.g. to "FE", "NONE")
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# DynGold objects have one method make: string -> string
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# that maps one gold feature,
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# and one method id: -> string that gives an ID unique to this DynGold class
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# and by which this DynGold class can be chosen.
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# "standard_dyngold_id":
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# string: standard DynGold object ID (see above)
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# "sentence_id_feature":
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# string: feature name for the sentence ID column, needed for each_sentence()
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#
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# further parameters that are passed on to SQLQuery.select: see there
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def initialize(table_col_pairs, # array:SelectTableAndColumns objects
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value_restrictions, # array:ValueRestriction objects
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db_obj, # MySql object (from mysql.rb) that already has access to the correct database
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parameters = {}) # hash with further parameters: see above
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@db_obj = db_obj
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@table_col_pairs = table_col_pairs
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@parameters = parameters
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# view empty?
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if @table_col_pairs.empty? or
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@table_col_pairs.big_and { |tc| tc.columns.class.to_s == "Array" and tc.columns.empty? }
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@view_empty = true
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return
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else
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@view_empty = false
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end
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# okay, we can make the view, it contains at least one table and
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# at least one column:
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# do one view for all columns requested, and one for the indices of each table
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#
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# @main_table is a DBResult object
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@main_table = execute_command(SQLQuery.select(@table_col_pairs,
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value_restrictions, parameters))
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# index_tables: Hash: table name => DBResult object
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@index_tables = Hash.new
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table_col_pairs.each_with_index { |tc, index|
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# read index column of this table, add all the other tables
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# with empty column lists
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index_table_col_pairs = @table_col_pairs.map_with_index { |other_tc, other_index|
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if other_index == index
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# the current table
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SelectTableAndColumns.new(tc.table_obj,
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[tc.table_obj.index_name])
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else
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# other table: keep just the table, not the columns
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SelectTableAndColumns.new(other_tc.table_obj, nil)
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end
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}
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@index_tables[tc.table_obj.table_name] = execute_command(SQLQuery.select(index_table_col_pairs,
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value_restrictions, parameters))
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}
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# map gold to something else?
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# yes, if parameters[gold] has been set
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if @parameters["gold"]
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@map_gold = true
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# remember which column in the DB table is the gold column
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@gold_index = column_names().index(@parameters["gold"])
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else
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@map_gold = false
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end
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end
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################
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# close
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#
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# to be called when the view is no longer needed:
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# frees the DBResult objects underlying this view
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def close()
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unless @view_empty
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@main_table.free()
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@index_tables.each_value { |t| t.free() }
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end
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end
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################
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# write_to_file
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#
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# writes instances to a file
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# each instance given as a comma-separated list of features
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# The features are the ones given in my_feature_list
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# (parameter to the new() method) above, in that order,
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# plus (dynamic) gold, which is last.
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#
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# guarantees that comma is used only to separate features -- but no other
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# changes in the feature values
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def write_to_file(file, # stream to write to
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dyn_gold_id=nil) #string: ID of a DynGold object from the dynamic_feature_list.
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# if nil, main gold is used
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each_instance_s(dyn_gold_id) { |instance_string|
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file.puts instance_string
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}
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end
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################
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# each_instance_s
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#
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# yields each instance as a string:
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# a comma-separated list of features
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# The features are the ones given in my_feature_list
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# (parameter to the new() method) above, in that order,
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# plus (dynamic) gold, which is last.
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#
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# guarantees that comma is used only to separate features -- but no other
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# changes in the feature values
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def each_instance_s(dyn_gold_id=nil) #string: ID of a DynGold object from the dynamic_feature_list.
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# if nil, main gold is used
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each_array(dyn_gold_id) {|array|
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yield array.map { |entry| entry.to_s.gsub(/,/, "COMMA") }.join(",")
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}
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end
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################
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# each_hash
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#
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# iterates over hashes representing rows
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# in each row, there is a gold key/value pair
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# specified by the optional argument dyn_gold_id.
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# which is the string ID of a DynGold object
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# from the dynamic_feature_list.
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# If arg is not present, main gold is used
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#
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# The key for the gold is the dyn_gold_id
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# If that is nil, the key is 'gold'
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#
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# yields: hashes column_name -> column_value
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def each_hash(dyn_gold_id=nil) #string: ID of a DynGold object from the dynamic_feature_list, or nil
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if @view_empty
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return
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end
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if @map_gold
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dyn_gold_obj = fetch_dyn_gold_obj(dyn_gold_id)
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end
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@main_table.reset()
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@main_table.each_hash { |row_hash|
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if @map_gold
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row_hash[@parameters["gold"]] = dyn_gold_obj.make(row_hash[@parameters["gold"]])
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end
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yield row_hash
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}
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end
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################
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# each_array
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#
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# iterates over arrays representing rows
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# the last item of each row is the gold column
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# selected by the optional argument dyn_gold_id.
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# which is the string ID of a DynGold object
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213
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# from the dynamic_feature_list.
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# If arg is not present, main gold is used
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215
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#
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216
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# yields: arrays of column values,
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217
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# values are in the order of my_feature_list given
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218
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# to the new() method, (dynamic) gold is last
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219
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def each_array(dyn_gold_id=nil) #string: ID of a DynGold object from the dynamic_feature_list, or nil
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220
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-
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221
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if @view_empty
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return
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223
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end
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224
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if @map_gold
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225
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dyn_gold_obj = fetch_dyn_gold_obj(dyn_gold_id)
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226
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end
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227
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@main_table.reset()
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-
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229
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@main_table.each {|row|
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if @gold_index
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gold = row.delete_at(@gold_index)
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if @map_gold
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row.push dyn_gold_obj.make(gold)
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else
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row.push gold
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end
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237
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end
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238
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-
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239
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yield row
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240
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}
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241
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end
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242
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-
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243
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################
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244
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# update_column
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245
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#
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246
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# update a column for all rows of this view
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#
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248
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# Given a column name to be updated, and a list of value tuples,
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249
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# update each row of the view, or rather the appropriate column of each row of the view,
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250
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# with values for that row.
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251
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#
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252
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# the list has the same length as the view, as there must be a value tuple
|
253
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# for each row of the view.
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254
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#
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255
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# returns: nothing
|
256
|
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def update_column(name, # string: column name
|
257
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values) # array of Objects
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258
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-
|
259
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if @view_empty
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260
|
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raise "Cannot update empty view"
|
261
|
-
end
|
262
|
-
|
263
|
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# find the first table in @table_col_pairs that has
|
264
|
-
# a column with this name
|
265
|
-
# and update that column
|
266
|
-
@table_col_pairs.each { |tc|
|
267
|
-
if (tc.columns.class.to_s == "Array" and tc.columns.include? name) or
|
268
|
-
(tc.columns == "*" and tc.table_obj.list_column_names().include? name)
|
269
|
-
|
270
|
-
table_name = tc.table_obj.table_name
|
271
|
-
|
272
|
-
# sanity check: number of update entries must match
|
273
|
-
# number of entries in this view
|
274
|
-
unless values.length() == @index_tables[table_name].num_rows()
|
275
|
-
$stderr.puts "Error: length of value array (#{values.length}) is not equal to length of view (#{@index_tables[table_name].num_rows})!"
|
276
|
-
exit 1
|
277
|
-
end
|
278
|
-
|
279
|
-
@index_tables[tc.table_obj.table_name].reset()
|
280
|
-
|
281
|
-
values.each { |value|
|
282
|
-
index = @index_tables[table_name].fetch_row().first
|
283
|
-
tc.table_obj.update_row(index, [[name, value]])
|
284
|
-
}
|
285
|
-
|
286
|
-
return
|
287
|
-
end
|
288
|
-
}
|
289
|
-
|
290
|
-
# no match found
|
291
|
-
$stderr.puts "View.rb Error: cannot update a column that is not in this view: #{name}"
|
292
|
-
exit 1
|
293
|
-
end
|
294
|
-
|
295
|
-
|
296
|
-
################
|
297
|
-
# each_sentence
|
298
|
-
#
|
299
|
-
# like each_hash, but it groups the row hashes sentence-wise
|
300
|
-
# sentence boundaries in the view are detected by the change in a
|
301
|
-
# special column describing sentence IDs
|
302
|
-
#
|
303
|
-
# also needs a dyngold object id
|
304
|
-
#
|
305
|
-
# returns: an array of hashes column_name -> column_value
|
306
|
-
def each_sentence(dyn_gold_id = nil) # string: ID of a DynGold object from the dynamic_feature_list, or nil
|
307
|
-
|
308
|
-
# sanity check 1: need to know what the sentence ID is
|
309
|
-
unless @parameters["sentence_id_feature"]
|
310
|
-
raise "I need the name of the sentence ID feature for each_sentence()"
|
311
|
-
end
|
312
|
-
# sanity check 2: the view needs to include the sentence ID
|
313
|
-
unless column_names().include? @parameters["sentence_id_feature"]
|
314
|
-
raise "View.each_sentence: Cannot do this without sentence ID in the view"
|
315
|
-
end
|
316
|
-
|
317
|
-
last_sent_id = nil
|
318
|
-
sentence = Array.new
|
319
|
-
each_hash(dyn_gold_id) {|row_hash|
|
320
|
-
if last_sent_id != row_hash[@parameters["sentence_id_feature"]] and
|
321
|
-
(!(last_sent_id.nil?))
|
322
|
-
yield sentence
|
323
|
-
sentence = Array.new
|
324
|
-
end
|
325
|
-
last_sent_id = row_hash[@parameters["sentence_id_feature"]]
|
326
|
-
sentence << row_hash
|
327
|
-
}
|
328
|
-
unless sentence.empty?
|
329
|
-
yield sentence
|
330
|
-
end
|
331
|
-
end
|
332
|
-
|
333
|
-
######################
|
334
|
-
# length
|
335
|
-
#
|
336
|
-
# returns the length of the view: the number of its rows
|
337
|
-
def length()
|
338
|
-
return @index_tables[@table_col_pairs.first.table_obj.table_name].num_rows
|
339
|
-
end
|
340
|
-
|
341
|
-
###
|
342
|
-
private
|
343
|
-
|
344
|
-
################
|
345
|
-
# column_names
|
346
|
-
#
|
347
|
-
# returns: array:string
|
348
|
-
# the list of column names for this view
|
349
|
-
# in the right order
|
350
|
-
def column_names()
|
351
|
-
if @view_empty
|
352
|
-
return []
|
353
|
-
else
|
354
|
-
return @main_table.list_column_names()
|
355
|
-
end
|
356
|
-
end
|
357
|
-
|
358
|
-
######
|
359
|
-
# fetch_dyn_gold_obj
|
360
|
-
#
|
361
|
-
# given an ID of a gold object, look for the DynGold object
|
362
|
-
# with this ID in the dynamic_feature_list and return it
|
363
|
-
# If the ID is nil, use the standard dynamic gold ID that
|
364
|
-
# has been set in the new() method.
|
365
|
-
# If that is nil too, take the non-modified gold as a
|
366
|
-
# default: return a dummy object with a make() method
|
367
|
-
# that just returns its parameter.
|
368
|
-
#
|
369
|
-
# returns: object offering a make() method
|
370
|
-
|
371
|
-
def fetch_dyn_gold_obj(dyn_gold_id) # string or nil
|
372
|
-
# find a DynGold object that will transform the gold column
|
373
|
-
if dyn_gold_id.nil?
|
374
|
-
dyn_gold_id = @parameters["standard_dyngold_id"]
|
375
|
-
end
|
376
|
-
|
377
|
-
dyn_gold_obj = "we need an object that can do 'make'"
|
378
|
-
if dyn_gold_id
|
379
|
-
unless @parameters["dynamic_feature_list"]
|
380
|
-
raise "No dynamic features given"
|
381
|
-
end
|
382
|
-
|
383
|
-
dyn_gold_obj = @parameters["dynamic_feature_list"].detect { |obj|
|
384
|
-
obj.id() == dyn_gold_id
|
385
|
-
}
|
386
|
-
if dyn_gold_obj.nil?
|
387
|
-
$stderr.puts "View.rb: Unknown DynGold ID " + dyn_gold_id
|
388
|
-
$stderr.puts "Using unchanged gold"
|
389
|
-
dyn_gold_id = nil
|
390
|
-
end
|
391
|
-
end
|
392
|
-
|
393
|
-
unless dyn_gold_id
|
394
|
-
# no dynamic gold ID: use unchanged gold by default
|
395
|
-
class << dyn_gold_obj
|
396
|
-
def make(x)
|
397
|
-
x
|
398
|
-
end
|
399
|
-
def id()
|
400
|
-
return "gold"
|
401
|
-
end
|
402
|
-
end
|
403
|
-
end
|
404
|
-
return dyn_gold_obj
|
405
|
-
end
|
406
|
-
|
407
|
-
def execute_command(command)
|
408
|
-
begin
|
409
|
-
return @db_obj.query(command)
|
410
|
-
rescue MysqlError => e
|
411
|
-
$stderr.puts "Error executing SQL query. Command was:\n" + command
|
412
|
-
$stderr.puts "Error code: #{e.errno}"
|
413
|
-
$stderr.puts "Error message: #{e.error}"
|
414
|
-
raise e
|
415
|
-
end
|
416
|
-
end
|
417
|
-
|
418
|
-
end
|