sequenceserver 2.0.0.rc8 → 2.1.0

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Files changed (758) hide show
  1. checksums.yaml +4 -4
  2. data/bin/sequenceserver +22 -30
  3. data/lib/sequenceserver/api_errors.rb +29 -3
  4. data/lib/sequenceserver/blast/constants.rb +1 -1
  5. data/lib/sequenceserver/blast/hit.rb +5 -16
  6. data/lib/sequenceserver/blast/job.rb +49 -24
  7. data/lib/sequenceserver/blast/report.rb +38 -30
  8. data/lib/sequenceserver/config.rb +52 -27
  9. data/lib/sequenceserver/database.rb +69 -9
  10. data/lib/sequenceserver/job.rb +14 -4
  11. data/lib/sequenceserver/job_remover.rb +25 -29
  12. data/lib/sequenceserver/makeblastdb.rb +40 -45
  13. data/lib/sequenceserver/refinements.rb +15 -0
  14. data/lib/sequenceserver/routes.rb +70 -4
  15. data/lib/sequenceserver/sequence.rb +8 -7
  16. data/lib/sequenceserver/sys.rb +2 -2
  17. data/lib/sequenceserver/version.rb +1 -1
  18. data/lib/sequenceserver/zip_file_generator.rb +56 -0
  19. data/lib/sequenceserver.rb +16 -11
  20. data/public/config.js +62 -55
  21. data/public/css/fonts.css +23 -22
  22. data/public/css/grapher.css +598 -594
  23. data/public/css/sequenceserver.css +130 -27
  24. data/public/css/sequenceserver.min.css +3 -3
  25. data/public/js/alignment_exporter.js +30 -22
  26. data/public/js/circos.js +370 -234
  27. data/public/js/cloud_share_modal.js +216 -0
  28. data/public/js/databases.js +144 -0
  29. data/public/js/databases_tree.js +144 -0
  30. data/public/js/dnd.js +164 -0
  31. data/public/js/download_fasta.js +1 -1
  32. data/public/js/error_modal.js +4 -11
  33. data/public/js/exporter.js +7 -3
  34. data/public/js/form.js +260 -0
  35. data/public/js/grapher.js +113 -106
  36. data/public/js/hit.js +84 -67
  37. data/public/js/hits_overview.js +3 -3
  38. data/public/js/hsp.js +343 -288
  39. data/public/js/jquery_world.js +4 -4
  40. data/public/js/length_distribution.js +5 -5
  41. data/public/js/mailto.js +36 -0
  42. data/public/js/options.js +84 -0
  43. data/public/js/query.js +321 -64
  44. data/public/js/report.js +322 -288
  45. data/public/js/report_root.js +75 -0
  46. data/public/js/search.js +28 -992
  47. data/public/js/search_button.js +195 -0
  48. data/public/js/sequence.js +2409 -2411
  49. data/public/js/sequence_modal.js +152 -159
  50. data/public/js/share_url.js +23 -0
  51. data/public/js/sidebar.js +265 -86
  52. data/public/js/svgExporter.js +12 -12
  53. data/public/js/tests/database.spec.js +60 -0
  54. data/public/js/tests/mock_data/databases.json +91 -0
  55. data/public/js/tests/mock_data/long_response.json +269 -0
  56. data/public/js/tests/mock_data/short_response.json +2240 -0
  57. data/public/js/tests/report.spec.js +99 -0
  58. data/public/js/tests/search_button.spec.js +14 -0
  59. data/public/js/tests/search_query.spec.js +41 -0
  60. data/public/js/visualisation_helpers.js +4 -5
  61. data/public/packages/circosJS@1.7.0.js +1640 -0
  62. data/public/packages/jquery-ui@1.11.4.js +16624 -0
  63. data/public/sequenceserver-report.min.js +2425 -19
  64. data/public/sequenceserver-search.min.js +2337 -11
  65. data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
  66. data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
  67. data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
  68. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
  69. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
  70. data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
  71. data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
  72. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
  73. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
  74. data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
  75. data/public/vendor/github/vakata/jstree@3.3.8/LICENSE-MIT +22 -0
  76. data/public/vendor/github/vakata/jstree@3.3.8/README.md +663 -0
  77. data/public/vendor/github/vakata/jstree@3.3.8/bower.json +33 -0
  78. data/public/vendor/github/vakata/jstree@3.3.8/component.json +28 -0
  79. data/public/vendor/github/vakata/jstree@3.3.8/composer.json +46 -0
  80. data/public/vendor/github/vakata/jstree@3.3.8/demo/README.md +2 -0
  81. data/public/vendor/github/vakata/jstree@3.3.8/demo/basic/index.html +146 -0
  82. data/public/vendor/github/vakata/jstree@3.3.8/demo/basic/root.json +1 -0
  83. data/public/vendor/github/vakata/jstree@3.3.8/dist/jstree.js +8612 -0
  84. data/public/vendor/github/vakata/jstree@3.3.8/dist/jstree.min.js +6 -0
  85. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/32px.png +0 -0
  86. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/40px.png +0 -0
  87. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/style.css +1102 -0
  88. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/style.min.css +1 -0
  89. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/throbber.gif +0 -0
  90. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/32px.png +0 -0
  91. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/40px.png +0 -0
  92. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/style.css +1146 -0
  93. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/style.min.css +1 -0
  94. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/throbber.gif +0 -0
  95. data/public/vendor/github/vakata/jstree@3.3.8/gruntfile.js +242 -0
  96. data/public/vendor/github/vakata/jstree@3.3.8/jstree.jquery.json +28 -0
  97. data/public/vendor/github/vakata/jstree@3.3.8/package.json +58 -0
  98. data/public/vendor/github/vakata/jstree@3.3.8/src/intro.js +14 -0
  99. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.changed.js +69 -0
  100. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.checkbox.js +976 -0
  101. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.conditionalselect.js +38 -0
  102. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.contextmenu.js +661 -0
  103. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.dnd.js +669 -0
  104. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.js +4931 -0
  105. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.massload.js +137 -0
  106. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.search.js +421 -0
  107. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.sort.js +74 -0
  108. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.state.js +138 -0
  109. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.types.js +372 -0
  110. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.unique.js +164 -0
  111. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.wholerow.js +122 -0
  112. data/public/vendor/github/vakata/jstree@3.3.8/src/misc.js +656 -0
  113. data/public/vendor/github/vakata/jstree@3.3.8/src/outro.js +1 -0
  114. data/public/vendor/github/vakata/jstree@3.3.8/src/sample.js +93 -0
  115. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/base.less +93 -0
  116. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/32px.png +0 -0
  117. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/40px.png +0 -0
  118. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/style.css +1102 -0
  119. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/style.less +22 -0
  120. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/throbber.gif +0 -0
  121. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/32px.png +0 -0
  122. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/40px.png +0 -0
  123. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/style.css +1146 -0
  124. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/style.less +50 -0
  125. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/throbber.gif +0 -0
  126. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/main.less +77 -0
  127. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/mixins.less +104 -0
  128. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/responsive.less +67 -0
  129. data/public/vendor/github/vakata/jstree@3.3.8/src/vakata-jstree.js +38 -0
  130. data/public/vendor/github/vakata/jstree@3.3.8/test/unit/index.html +16 -0
  131. data/public/vendor/github/vakata/jstree@3.3.8/test/unit/libs/qunit.css +244 -0
  132. data/public/vendor/github/vakata/jstree@3.3.8/test/unit/libs/qunit.js +2212 -0
  133. data/public/vendor/github/vakata/jstree@3.3.8/test/unit/test.js +11 -0
  134. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/desktop/index.html +44 -0
  135. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/mobile/index.html +42 -0
  136. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/desktop/desktop.png +0 -0
  137. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/desktop/home.png +0 -0
  138. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/mobile/home.png +0 -0
  139. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/mobile/mobile.png +0 -0
  140. data/public/vendor/github/vakata/jstree@3.3.8.js +3 -0
  141. data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
  142. data/public/vendor/npm/assert@1.5.0/README.md +105 -0
  143. data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
  144. data/public/vendor/npm/assert@1.5.0/package.json +32 -0
  145. data/public/vendor/npm/assert@1.5.0/test.js +288 -0
  146. data/public/vendor/npm/assert@1.5.0.js +1 -0
  147. data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
  148. data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
  149. data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
  150. data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
  151. data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
  152. data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
  153. data/public/vendor/npm/base64-js@1.5.1.js +1 -0
  154. data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
  155. data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
  156. data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
  157. data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
  158. data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
  159. data/public/vendor/npm/buffer@5.7.1.js +1 -0
  160. data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
  161. data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
  162. data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
  163. data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
  164. data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
  165. data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
  166. data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
  167. data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
  168. data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
  169. data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
  170. data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
  171. data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
  172. data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
  173. data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
  174. data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
  175. data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
  176. data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
  177. data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
  178. data/public/vendor/npm/events@1.0.2.js +1 -1
  179. data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
  180. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
  181. data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
  182. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
  183. data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
  184. data/public/vendor/npm/ieee754@1.2.1.js +1 -0
  185. data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
  186. data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
  187. data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
  188. data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
  189. data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
  190. data/public/vendor/npm/indexof@0.0.1.js +1 -0
  191. data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
  192. data/public/vendor/npm/inherits@2.0.1.js +1 -1
  193. data/public/vendor/npm/isarray@0.0.1.js +1 -1
  194. data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
  195. data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
  196. data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
  197. data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
  198. data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
  199. data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
  200. data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
  201. data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
  202. data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
  203. data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
  204. data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
  205. data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
  206. data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
  207. data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
  208. data/public/vendor/npm/object-assign@4.1.1.js +1 -0
  209. data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
  210. data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
  211. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
  212. data/public/vendor/npm/process@0.11.10/browser.js +184 -0
  213. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
  214. data/public/vendor/npm/process@0.11.10/test.js +185 -0
  215. data/public/vendor/npm/process@0.11.10.js +1 -0
  216. data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
  217. data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
  218. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
  219. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
  220. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
  221. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
  222. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
  223. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
  224. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
  225. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
  226. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
  227. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
  228. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
  229. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
  230. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
  231. data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
  232. data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
  233. data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
  234. data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
  235. data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
  236. data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
  237. data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
  238. data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
  239. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
  240. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
  241. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
  242. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
  243. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
  244. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
  245. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
  246. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
  247. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
  248. data/public/vendor/npm/react-dom@18.0.0.js +1 -0
  249. data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
  250. data/public/vendor/npm/react@18.0.0/README.md +13 -0
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  729. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-base64.js +0 -26
  730. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-binary-search.js +0 -37
  731. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-dog-fooding.js +0 -76
  732. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-source-map-consumer.js +0 -426
  733. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-source-map-generator.js +0 -480
  734. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-source-node.js +0 -307
  735. data/public/vendor/npm/source-map@0.1.31/test/source-map/util.js +0 -84
  736. data/public/vendor/npm/source-map@0.1.31.js +0 -1
  737. data/public/vendor/npm/through@2.3.8/LICENSE.APACHE2 +0 -15
  738. data/public/vendor/npm/through@2.3.8/LICENSE.MIT +0 -24
  739. data/public/vendor/npm/through@2.3.8/index.js +0 -93
  740. data/public/vendor/npm/through@2.3.8/package.json +0 -36
  741. data/public/vendor/npm/through@2.3.8/readme.markdown +0 -64
  742. data/public/vendor/npm/through@2.3.8/test/async.js +0 -26
  743. data/public/vendor/npm/through@2.3.8/test/auto-destroy.js +0 -26
  744. data/public/vendor/npm/through@2.3.8/test/buffering.js +0 -57
  745. data/public/vendor/npm/through@2.3.8/test/end.js +0 -37
  746. data/public/vendor/npm/through@2.3.8/test/index.js +0 -98
  747. data/public/vendor/npm/through@2.3.8/test.js +0 -2
  748. data/public/vendor/npm/through@2.3.8.js +0 -1
  749. data/views/_options.erb +0 -135
  750. /data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-buffer@0.1.1}/index.js +0 -0
  751. /data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/index.js +0 -0
  752. /data/public/vendor/npm/{readable-stream@1.1.13 → assert@1.5.0}/LICENSE +0 -0
  753. /data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/LICENSE +0 -0
  754. /data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/README.md +0 -0
  755. /data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/LICENSE +0 -0
  756. /data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/index.js +0 -0
  757. /data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/README.md +0 -0
  758. /data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/float.patch +0 -0
@@ -1,45 +0,0 @@
1
- /**
2
- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule getEventModifierState
10
- * @typechecks static-only
11
- */
12
-
13
- 'use strict';
14
-
15
- /**
16
- * Translation from modifier key to the associated property in the event.
17
- * @see http://www.w3.org/TR/DOM-Level-3-Events/#keys-Modifiers
18
- */
19
-
20
- var modifierKeyToProp = {
21
- 'Alt': 'altKey',
22
- 'Control': 'ctrlKey',
23
- 'Meta': 'metaKey',
24
- 'Shift': 'shiftKey'
25
- };
26
-
27
- // IE8 does not implement getModifierState so we simply map it to the only
28
- // modifier keys exposed by the event itself, does not support Lock-keys.
29
- // Currently, all major browsers except Chrome seems to support Lock-keys.
30
- function modifierStateGetter(keyArg) {
31
- /*jshint validthis:true */
32
- var syntheticEvent = this;
33
- var nativeEvent = syntheticEvent.nativeEvent;
34
- if (nativeEvent.getModifierState) {
35
- return nativeEvent.getModifierState(keyArg);
36
- }
37
- var keyProp = modifierKeyToProp[keyArg];
38
- return keyProp ? !!nativeEvent[keyProp] : false;
39
- }
40
-
41
- function getEventModifierState(nativeEvent) {
42
- return modifierStateGetter;
43
- }
44
-
45
- module.exports = getEventModifierState;
@@ -1,29 +0,0 @@
1
- /**
2
- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule getEventTarget
10
- * @typechecks static-only
11
- */
12
-
13
- 'use strict';
14
-
15
- /**
16
- * Gets the target node from a native browser event by accounting for
17
- * inconsistencies in browser DOM APIs.
18
- *
19
- * @param {object} nativeEvent Native browser event.
20
- * @return {DOMEventTarget} Target node.
21
- */
22
- function getEventTarget(nativeEvent) {
23
- var target = nativeEvent.target || nativeEvent.srcElement || window;
24
- // Safari may fire events on text nodes (Node.TEXT_NODE is 3).
25
- // @see http://www.quirksmode.org/js/events_properties.html
26
- return target.nodeType === 3 ? target.parentNode : target;
27
- }
28
-
29
- module.exports = getEventTarget;
@@ -1,42 +0,0 @@
1
- /**
2
- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule getIteratorFn
10
- * @typechecks static-only
11
- */
12
-
13
- 'use strict';
14
-
15
- /* global Symbol */
16
- var ITERATOR_SYMBOL = typeof Symbol === 'function' && Symbol.iterator;
17
- var FAUX_ITERATOR_SYMBOL = '@@iterator'; // Before Symbol spec.
18
-
19
- /**
20
- * Returns the iterator method function contained on the iterable object.
21
- *
22
- * Be sure to invoke the function with the iterable as context:
23
- *
24
- * var iteratorFn = getIteratorFn(myIterable);
25
- * if (iteratorFn) {
26
- * var iterator = iteratorFn.call(myIterable);
27
- * ...
28
- * }
29
- *
30
- * @param {?object} maybeIterable
31
- * @return {?function}
32
- */
33
- function getIteratorFn(maybeIterable) {
34
- var iteratorFn = maybeIterable && (
35
- (ITERATOR_SYMBOL && maybeIterable[ITERATOR_SYMBOL] || maybeIterable[FAUX_ITERATOR_SYMBOL])
36
- );
37
- if (typeof iteratorFn === 'function') {
38
- return iteratorFn;
39
- }
40
- }
41
-
42
- module.exports = getIteratorFn;
@@ -1,73 +0,0 @@
1
- /* */
2
- (function(process) {
3
- var ExecutionEnvironment = require("./ExecutionEnvironment");
4
- var invariant = require("./invariant");
5
- var dummyNode = ExecutionEnvironment.canUseDOM ? document.createElement('div') : null;
6
- var shouldWrap = {
7
- 'circle': true,
8
- 'clipPath': true,
9
- 'defs': true,
10
- 'ellipse': true,
11
- 'g': true,
12
- 'line': true,
13
- 'linearGradient': true,
14
- 'path': true,
15
- 'polygon': true,
16
- 'polyline': true,
17
- 'radialGradient': true,
18
- 'rect': true,
19
- 'stop': true,
20
- 'text': true
21
- };
22
- var selectWrap = [1, '<select multiple="true">', '</select>'];
23
- var tableWrap = [1, '<table>', '</table>'];
24
- var trWrap = [3, '<table><tbody><tr>', '</tr></tbody></table>'];
25
- var svgWrap = [1, '<svg>', '</svg>'];
26
- var markupWrap = {
27
- '*': [1, '?<div>', '</div>'],
28
- 'area': [1, '<map>', '</map>'],
29
- 'col': [2, '<table><tbody></tbody><colgroup>', '</colgroup></table>'],
30
- 'legend': [1, '<fieldset>', '</fieldset>'],
31
- 'param': [1, '<object>', '</object>'],
32
- 'tr': [2, '<table><tbody>', '</tbody></table>'],
33
- 'optgroup': selectWrap,
34
- 'option': selectWrap,
35
- 'caption': tableWrap,
36
- 'colgroup': tableWrap,
37
- 'tbody': tableWrap,
38
- 'tfoot': tableWrap,
39
- 'thead': tableWrap,
40
- 'td': trWrap,
41
- 'th': trWrap,
42
- 'circle': svgWrap,
43
- 'clipPath': svgWrap,
44
- 'defs': svgWrap,
45
- 'ellipse': svgWrap,
46
- 'g': svgWrap,
47
- 'line': svgWrap,
48
- 'linearGradient': svgWrap,
49
- 'path': svgWrap,
50
- 'polygon': svgWrap,
51
- 'polyline': svgWrap,
52
- 'radialGradient': svgWrap,
53
- 'rect': svgWrap,
54
- 'stop': svgWrap,
55
- 'text': svgWrap
56
- };
57
- function getMarkupWrap(nodeName) {
58
- ("production" !== process.env.NODE_ENV ? invariant(!!dummyNode, 'Markup wrapping node not initialized') : invariant(!!dummyNode));
59
- if (!markupWrap.hasOwnProperty(nodeName)) {
60
- nodeName = '*';
61
- }
62
- if (!shouldWrap.hasOwnProperty(nodeName)) {
63
- if (nodeName === '*') {
64
- dummyNode.innerHTML = '<link />';
65
- } else {
66
- dummyNode.innerHTML = '<' + nodeName + '></' + nodeName + '>';
67
- }
68
- shouldWrap[nodeName] = !dummyNode.firstChild;
69
- }
70
- return shouldWrap[nodeName] ? markupWrap[nodeName] : null;
71
- }
72
- module.exports = getMarkupWrap;
73
- })(require("process"));
@@ -1,73 +0,0 @@
1
- /**
2
- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule getNodeForCharacterOffset
10
- */
11
-
12
- 'use strict';
13
-
14
- /**
15
- * Given any node return the first leaf node without children.
16
- *
17
- * @param {DOMElement|DOMTextNode} node
18
- * @return {DOMElement|DOMTextNode}
19
- */
20
- function getLeafNode(node) {
21
- while (node && node.firstChild) {
22
- node = node.firstChild;
23
- }
24
- return node;
25
- }
26
-
27
- /**
28
- * Get the next sibling within a container. This will walk up the
29
- * DOM if a node's siblings have been exhausted.
30
- *
31
- * @param {DOMElement|DOMTextNode} node
32
- * @return {?DOMElement|DOMTextNode}
33
- */
34
- function getSiblingNode(node) {
35
- while (node) {
36
- if (node.nextSibling) {
37
- return node.nextSibling;
38
- }
39
- node = node.parentNode;
40
- }
41
- }
42
-
43
- /**
44
- * Get object describing the nodes which contain characters at offset.
45
- *
46
- * @param {DOMElement|DOMTextNode} root
47
- * @param {number} offset
48
- * @return {?object}
49
- */
50
- function getNodeForCharacterOffset(root, offset) {
51
- var node = getLeafNode(root);
52
- var nodeStart = 0;
53
- var nodeEnd = 0;
54
-
55
- while (node) {
56
- if (node.nodeType === 3) {
57
- nodeEnd = nodeStart + node.textContent.length;
58
-
59
- if (nodeStart <= offset && nodeEnd >= offset) {
60
- return {
61
- node: node,
62
- offset: offset - nodeStart
63
- };
64
- }
65
-
66
- nodeStart = nodeEnd;
67
- }
68
-
69
- node = getLeafNode(getSiblingNode(node));
70
- }
71
- }
72
-
73
- module.exports = getNodeForCharacterOffset;
@@ -1,33 +0,0 @@
1
- /**
2
- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule getReactRootElementInContainer
10
- */
11
-
12
- 'use strict';
13
-
14
- var DOC_NODE_TYPE = 9;
15
-
16
- /**
17
- * @param {DOMElement|DOMDocument} container DOM element that may contain
18
- * a React component
19
- * @return {?*} DOM element that may have the reactRoot ID, or null.
20
- */
21
- function getReactRootElementInContainer(container) {
22
- if (!container) {
23
- return null;
24
- }
25
-
26
- if (container.nodeType === DOC_NODE_TYPE) {
27
- return container.documentElement;
28
- } else {
29
- return container.firstChild;
30
- }
31
- }
32
-
33
- module.exports = getReactRootElementInContainer;
@@ -1,11 +0,0 @@
1
- /* */
2
- 'use strict';
3
- var ExecutionEnvironment = require("./ExecutionEnvironment");
4
- var contentKey = null;
5
- function getTextContentAccessor() {
6
- if (!contentKey && ExecutionEnvironment.canUseDOM) {
7
- contentKey = 'textContent' in document.documentElement ? 'textContent' : 'innerText';
8
- }
9
- return contentKey;
10
- }
11
- module.exports = getTextContentAccessor;
@@ -1,38 +0,0 @@
1
- /**
2
- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule getUnboundedScrollPosition
10
- * @typechecks
11
- */
12
-
13
- "use strict";
14
-
15
- /**
16
- * Gets the scroll position of the supplied element or window.
17
- *
18
- * The return values are unbounded, unlike `getScrollPosition`. This means they
19
- * may be negative or exceed the element boundaries (which is possible using
20
- * inertial scrolling).
21
- *
22
- * @param {DOMWindow|DOMElement} scrollable
23
- * @return {object} Map with `x` and `y` keys.
24
- */
25
- function getUnboundedScrollPosition(scrollable) {
26
- if (scrollable === window) {
27
- return {
28
- x: window.pageXOffset || document.documentElement.scrollLeft,
29
- y: window.pageYOffset || document.documentElement.scrollTop
30
- };
31
- }
32
- return {
33
- x: scrollable.scrollLeft,
34
- y: scrollable.scrollTop
35
- };
36
- }
37
-
38
- module.exports = getUnboundedScrollPosition;
@@ -1,31 +0,0 @@
1
- /**
2
- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule hyphenate
10
- * @typechecks
11
- */
12
-
13
- var _uppercasePattern = /([A-Z])/g;
14
-
15
- /**
16
- * Hyphenates a camelcased string, for example:
17
- *
18
- * > hyphenate('backgroundColor')
19
- * < "background-color"
20
- *
21
- * For CSS style names, use `hyphenateStyleName` instead which works properly
22
- * with all vendor prefixes, including `ms`.
23
- *
24
- * @param {string} string
25
- * @return {string}
26
- */
27
- function hyphenate(string) {
28
- return string.replace(_uppercasePattern, '-$1').toLowerCase();
29
- }
30
-
31
- module.exports = hyphenate;
@@ -1,8 +0,0 @@
1
- /* */
2
- "use strict";
3
- var hyphenate = require("./hyphenate");
4
- var msPattern = /^ms-/;
5
- function hyphenateStyleName(string) {
6
- return hyphenate(string).replace(msPattern, '-ms-');
7
- }
8
- module.exports = hyphenateStyleName;
@@ -1,55 +0,0 @@
1
- /* */
2
- (function(process) {
3
- 'use strict';
4
- var ReactCompositeComponent = require("./ReactCompositeComponent");
5
- var ReactEmptyComponent = require("./ReactEmptyComponent");
6
- var ReactNativeComponent = require("./ReactNativeComponent");
7
- var assign = require("./Object.assign");
8
- var invariant = require("./invariant");
9
- var warning = require("./warning");
10
- var ReactCompositeComponentWrapper = function() {};
11
- assign(ReactCompositeComponentWrapper.prototype, ReactCompositeComponent.Mixin, {_instantiateReactComponent: instantiateReactComponent});
12
- function isInternalComponentType(type) {
13
- return (typeof type === 'function' && typeof type.prototype !== 'undefined' && typeof type.prototype.mountComponent === 'function' && typeof type.prototype.receiveComponent === 'function');
14
- }
15
- function instantiateReactComponent(node, parentCompositeType) {
16
- var instance;
17
- if (node === null || node === false) {
18
- node = ReactEmptyComponent.emptyElement;
19
- }
20
- if (typeof node === 'object') {
21
- var element = node;
22
- if ("production" !== process.env.NODE_ENV) {
23
- ("production" !== process.env.NODE_ENV ? warning(element && (typeof element.type === 'function' || typeof element.type === 'string'), 'Only functions or strings can be mounted as React components.') : null);
24
- }
25
- if (parentCompositeType === element.type && typeof element.type === 'string') {
26
- instance = ReactNativeComponent.createInternalComponent(element);
27
- } else if (isInternalComponentType(element.type)) {
28
- instance = new element.type(element);
29
- } else {
30
- instance = new ReactCompositeComponentWrapper();
31
- }
32
- } else if (typeof node === 'string' || typeof node === 'number') {
33
- instance = ReactNativeComponent.createInstanceForText(node);
34
- } else {
35
- ("production" !== process.env.NODE_ENV ? invariant(false, 'Encountered invalid React node of type %s', typeof node) : invariant(false));
36
- }
37
- if ("production" !== process.env.NODE_ENV) {
38
- ("production" !== process.env.NODE_ENV ? warning(typeof instance.construct === 'function' && typeof instance.mountComponent === 'function' && typeof instance.receiveComponent === 'function' && typeof instance.unmountComponent === 'function', 'Only React Components can be mounted.') : null);
39
- }
40
- instance.construct(node);
41
- instance._mountIndex = 0;
42
- instance._mountImage = null;
43
- if ("production" !== process.env.NODE_ENV) {
44
- instance._isOwnerNecessary = false;
45
- instance._warnedAboutRefsInRender = false;
46
- }
47
- if ("production" !== process.env.NODE_ENV) {
48
- if (Object.preventExtensions) {
49
- Object.preventExtensions(instance);
50
- }
51
- }
52
- return instance;
53
- }
54
- module.exports = instantiateReactComponent;
55
- })(require("process"));
@@ -1,26 +0,0 @@
1
- /* */
2
- (function(process) {
3
- "use strict";
4
- var invariant = function(condition, format, a, b, c, d, e, f) {
5
- if ("production" !== process.env.NODE_ENV) {
6
- if (format === undefined) {
7
- throw new Error('invariant requires an error message argument');
8
- }
9
- }
10
- if (!condition) {
11
- var error;
12
- if (format === undefined) {
13
- error = new Error('Minified exception occurred; use the non-minified dev environment ' + 'for the full error message and additional helpful warnings.');
14
- } else {
15
- var args = [a, b, c, d, e, f];
16
- var argIndex = 0;
17
- error = new Error('Invariant Violation: ' + format.replace(/%s/g, function() {
18
- return args[argIndex++];
19
- }));
20
- }
21
- error.framesToPop = 1;
22
- throw error;
23
- }
24
- };
25
- module.exports = invariant;
26
- })(require("process"));
@@ -1,24 +0,0 @@
1
- /* */
2
- 'use strict';
3
- var ExecutionEnvironment = require("./ExecutionEnvironment");
4
- var useHasFeature;
5
- if (ExecutionEnvironment.canUseDOM) {
6
- useHasFeature = document.implementation && document.implementation.hasFeature && document.implementation.hasFeature('', '') !== true;
7
- }
8
- function isEventSupported(eventNameSuffix, capture) {
9
- if (!ExecutionEnvironment.canUseDOM || capture && !('addEventListener' in document)) {
10
- return false;
11
- }
12
- var eventName = 'on' + eventNameSuffix;
13
- var isSupported = eventName in document;
14
- if (!isSupported) {
15
- var element = document.createElement('div');
16
- element.setAttribute(eventName, 'return;');
17
- isSupported = typeof element[eventName] === 'function';
18
- }
19
- if (!isSupported && useHasFeature && eventNameSuffix === 'wheel') {
20
- isSupported = document.implementation.hasFeature('Events.wheel', '3.0');
21
- }
22
- return isSupported;
23
- }
24
- module.exports = isEventSupported;
@@ -1,25 +0,0 @@
1
- /**
2
- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule isNode
10
- * @typechecks
11
- */
12
-
13
- /**
14
- * @param {*} object The object to check.
15
- * @return {boolean} Whether or not the object is a DOM node.
16
- */
17
- function isNode(object) {
18
- return !!(object && (
19
- ((typeof Node === 'function' ? object instanceof Node : typeof object === 'object' &&
20
- typeof object.nodeType === 'number' &&
21
- typeof object.nodeName === 'string'))
22
- ));
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- }
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-
25
- module.exports = isNode;
@@ -1,41 +0,0 @@
1
- /**
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- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule isTextInputElement
10
- */
11
-
12
- 'use strict';
13
-
14
- /**
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- * @see http://www.whatwg.org/specs/web-apps/current-work/multipage/the-input-element.html#input-type-attr-summary
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- */
17
- var supportedInputTypes = {
18
- 'color': true,
19
- 'date': true,
20
- 'datetime': true,
21
- 'datetime-local': true,
22
- 'email': true,
23
- 'month': true,
24
- 'number': true,
25
- 'password': true,
26
- 'range': true,
27
- 'search': true,
28
- 'tel': true,
29
- 'text': true,
30
- 'time': true,
31
- 'url': true,
32
- 'week': true
33
- };
34
-
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- function isTextInputElement(elem) {
36
- return elem && (
37
- (elem.nodeName === 'INPUT' && supportedInputTypes[elem.type] || elem.nodeName === 'TEXTAREA')
38
- );
39
- }
40
-
41
- module.exports = isTextInputElement;
@@ -1,6 +0,0 @@
1
- /* */
2
- var isNode = require("./isNode");
3
- function isTextNode(object) {
4
- return isNode(object) && object.nodeType == 3;
5
- }
6
- module.exports = isTextNode;
@@ -1,39 +0,0 @@
1
- /**
2
- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule joinClasses
10
- * @typechecks static-only
11
- */
12
-
13
- 'use strict';
14
-
15
- /**
16
- * Combines multiple className strings into one.
17
- * http://jsperf.com/joinclasses-args-vs-array
18
- *
19
- * @param {...?string} classes
20
- * @return {string}
21
- */
22
- function joinClasses(className/*, ... */) {
23
- if (!className) {
24
- className = '';
25
- }
26
- var nextClass;
27
- var argLength = arguments.length;
28
- if (argLength > 1) {
29
- for (var ii = 1; ii < argLength; ii++) {
30
- nextClass = arguments[ii];
31
- if (nextClass) {
32
- className = (className ? className + ' ' : '') + nextClass;
33
- }
34
- }
35
- }
36
- return className;
37
- }
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-
39
- module.exports = joinClasses;
@@ -1,18 +0,0 @@
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- /* */
2
- (function(process) {
3
- 'use strict';
4
- var invariant = require("./invariant");
5
- var keyMirror = function(obj) {
6
- var ret = {};
7
- var key;
8
- ("production" !== process.env.NODE_ENV ? invariant(obj instanceof Object && !Array.isArray(obj), 'keyMirror(...): Argument must be an object.') : invariant(obj instanceof Object && !Array.isArray(obj)));
9
- for (key in obj) {
10
- if (!obj.hasOwnProperty(key)) {
11
- continue;
12
- }
13
- ret[key] = key;
14
- }
15
- return ret;
16
- };
17
- module.exports = keyMirror;
18
- })(require("process"));
@@ -1,34 +0,0 @@
1
- /**
2
- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule keyOf
10
- */
11
-
12
- /**
13
- * Allows extraction of a minified key. Let's the build system minify keys
14
- * without loosing the ability to dynamically use key strings as values
15
- * themselves. Pass in an object with a single key/val pair and it will return
16
- * you the string key of that single record. Suppose you want to grab the
17
- * value for a key 'className' inside of an object. Key/val minification may
18
- * have aliased that key to be 'xa12'. keyOf({className: null}) will return
19
- * 'xa12' in that case. Resolve keys you want to use once at startup time, then
20
- * reuse those resolutions.
21
- */
22
- var keyOf = function(oneKeyObj) {
23
- var key;
24
- for (key in oneKeyObj) {
25
- if (!oneKeyObj.hasOwnProperty(key)) {
26
- continue;
27
- }
28
- return key;
29
- }
30
- return null;
31
- };
32
-
33
-
34
- module.exports = keyOf;