sequenceserver 2.0.0.rc8 → 2.1.0
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- checksums.yaml +4 -4
- data/bin/sequenceserver +22 -30
- data/lib/sequenceserver/api_errors.rb +29 -3
- data/lib/sequenceserver/blast/constants.rb +1 -1
- data/lib/sequenceserver/blast/hit.rb +5 -16
- data/lib/sequenceserver/blast/job.rb +49 -24
- data/lib/sequenceserver/blast/report.rb +38 -30
- data/lib/sequenceserver/config.rb +52 -27
- data/lib/sequenceserver/database.rb +69 -9
- data/lib/sequenceserver/job.rb +14 -4
- data/lib/sequenceserver/job_remover.rb +25 -29
- data/lib/sequenceserver/makeblastdb.rb +40 -45
- data/lib/sequenceserver/refinements.rb +15 -0
- data/lib/sequenceserver/routes.rb +70 -4
- data/lib/sequenceserver/sequence.rb +8 -7
- data/lib/sequenceserver/sys.rb +2 -2
- data/lib/sequenceserver/version.rb +1 -1
- data/lib/sequenceserver/zip_file_generator.rb +56 -0
- data/lib/sequenceserver.rb +16 -11
- data/public/config.js +62 -55
- data/public/css/fonts.css +23 -22
- data/public/css/grapher.css +598 -594
- data/public/css/sequenceserver.css +130 -27
- data/public/css/sequenceserver.min.css +3 -3
- data/public/js/alignment_exporter.js +30 -22
- data/public/js/circos.js +370 -234
- data/public/js/cloud_share_modal.js +216 -0
- data/public/js/databases.js +144 -0
- data/public/js/databases_tree.js +144 -0
- data/public/js/dnd.js +164 -0
- data/public/js/download_fasta.js +1 -1
- data/public/js/error_modal.js +4 -11
- data/public/js/exporter.js +7 -3
- data/public/js/form.js +260 -0
- data/public/js/grapher.js +113 -106
- data/public/js/hit.js +84 -67
- data/public/js/hits_overview.js +3 -3
- data/public/js/hsp.js +343 -288
- data/public/js/jquery_world.js +4 -4
- data/public/js/length_distribution.js +5 -5
- data/public/js/mailto.js +36 -0
- data/public/js/options.js +84 -0
- data/public/js/query.js +321 -64
- data/public/js/report.js +322 -288
- data/public/js/report_root.js +75 -0
- data/public/js/search.js +28 -992
- data/public/js/search_button.js +195 -0
- data/public/js/sequence.js +2409 -2411
- data/public/js/sequence_modal.js +152 -159
- data/public/js/share_url.js +23 -0
- data/public/js/sidebar.js +265 -86
- data/public/js/svgExporter.js +12 -12
- data/public/js/tests/database.spec.js +60 -0
- data/public/js/tests/mock_data/databases.json +91 -0
- data/public/js/tests/mock_data/long_response.json +269 -0
- data/public/js/tests/mock_data/short_response.json +2240 -0
- data/public/js/tests/report.spec.js +99 -0
- data/public/js/tests/search_button.spec.js +14 -0
- data/public/js/tests/search_query.spec.js +41 -0
- data/public/js/visualisation_helpers.js +4 -5
- data/public/packages/circosJS@1.7.0.js +1640 -0
- data/public/packages/jquery-ui@1.11.4.js +16624 -0
- data/public/sequenceserver-report.min.js +2425 -19
- data/public/sequenceserver-search.min.js +2337 -11
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
- data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
- data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
- data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
- data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
- data/public/vendor/github/vakata/jstree@3.3.8/LICENSE-MIT +22 -0
- data/public/vendor/github/vakata/jstree@3.3.8/README.md +663 -0
- data/public/vendor/github/vakata/jstree@3.3.8/bower.json +33 -0
- data/public/vendor/github/vakata/jstree@3.3.8/component.json +28 -0
- data/public/vendor/github/vakata/jstree@3.3.8/composer.json +46 -0
- data/public/vendor/github/vakata/jstree@3.3.8/demo/README.md +2 -0
- data/public/vendor/github/vakata/jstree@3.3.8/demo/basic/index.html +146 -0
- data/public/vendor/github/vakata/jstree@3.3.8/demo/basic/root.json +1 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/jstree.js +8612 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/jstree.min.js +6 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/32px.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/40px.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/style.css +1102 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/style.min.css +1 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/throbber.gif +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/32px.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/40px.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/style.css +1146 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/style.min.css +1 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/throbber.gif +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/gruntfile.js +242 -0
- data/public/vendor/github/vakata/jstree@3.3.8/jstree.jquery.json +28 -0
- data/public/vendor/github/vakata/jstree@3.3.8/package.json +58 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/intro.js +14 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.changed.js +69 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.checkbox.js +976 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.conditionalselect.js +38 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.contextmenu.js +661 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.dnd.js +669 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.js +4931 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.massload.js +137 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.search.js +421 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.sort.js +74 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.state.js +138 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.types.js +372 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.unique.js +164 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.wholerow.js +122 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/misc.js +656 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/outro.js +1 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/sample.js +93 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/base.less +93 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/32px.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/40px.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/style.css +1102 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/style.less +22 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/throbber.gif +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/32px.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/40px.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/style.css +1146 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/style.less +50 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/throbber.gif +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/main.less +77 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/mixins.less +104 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/responsive.less +67 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/vakata-jstree.js +38 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/unit/index.html +16 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/unit/libs/qunit.css +244 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/unit/libs/qunit.js +2212 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/unit/test.js +11 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/visual/desktop/index.html +44 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/visual/mobile/index.html +42 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/desktop/desktop.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/desktop/home.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/mobile/home.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/mobile/mobile.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8.js +3 -0
- data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
- data/public/vendor/npm/assert@1.5.0/README.md +105 -0
- data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
- data/public/vendor/npm/assert@1.5.0/package.json +32 -0
- data/public/vendor/npm/assert@1.5.0/test.js +288 -0
- data/public/vendor/npm/assert@1.5.0.js +1 -0
- data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
- data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
- data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
- data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
- data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
- data/public/vendor/npm/base64-js@1.5.1.js +1 -0
- data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
- data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
- data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
- data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
- data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
- data/public/vendor/npm/buffer@5.7.1.js +1 -0
- data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
- data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
- data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
- data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
- data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
- data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
- data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
- data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
- data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
- data/public/vendor/npm/events@1.0.2.js +1 -1
- data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
- data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
- data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
- data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
- data/public/vendor/npm/ieee754@1.2.1.js +1 -0
- data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
- data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
- data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
- data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
- data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
- data/public/vendor/npm/indexof@0.0.1.js +1 -0
- data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
- data/public/vendor/npm/inherits@2.0.1.js +1 -1
- data/public/vendor/npm/isarray@0.0.1.js +1 -1
- data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
- data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
- data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
- data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
- data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
- data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
- data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
- data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
- data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
- data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
- data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
- data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
- data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
- data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
- data/public/vendor/npm/object-assign@4.1.1.js +1 -0
- data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
- data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
- data/public/vendor/npm/process@0.11.10/browser.js +184 -0
- data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
- data/public/vendor/npm/process@0.11.10/test.js +185 -0
- data/public/vendor/npm/process@0.11.10.js +1 -0
- data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
- data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
- data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
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"license": "MIT",
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"test": "standard && node ./bin/test.js",
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"test-browser-local": "zuul --local -- test/*.js test/node/*.js",
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"test-node": "tape test/*.js test/node/*.js test/node-es6/*.js && OBJECT_IMPL=true tape test/*.js test/node/*.js",
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"perf": "browserify --debug perf/bracket-notation.js > perf/bundle.js && open perf/index.html",
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"perf-node": "node perf/bracket-notation.js && node perf/concat.js && node perf/copy-big.js && node perf/copy.js && node perf/new-big.js && node perf/new.js && node perf/readDoubleBE.js && node perf/readFloatBE.js && node perf/readUInt32LE.js && node perf/slice.js && node perf/writeFloatBE.js",
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|
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|
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// b. Let kPresent be the result of calling the HasProperty internal method of O with argument Pk.
|
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// This step can be combined with c
|
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|
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if (k in O) {
|
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|
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kValue = O[k];
|
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|
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// ii. Call the Call internal method of callback with T as the this value and
|
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// argument list containing kValue, k, and O.
|
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callback.call(T, kValue, k, O);
|
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}
|
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// d. Increase k by 1.
|
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k++;
|
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}
|
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// 8. return undefined
|
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};
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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// 1. Let O be the result of calling ToObject passing the |this|
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// value as the argument.
|
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var O = Object(this);
|
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|
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// 2. Let lenValue be the result of calling the Get internal
|
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|
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// method of O with the argument "length".
|
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|
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// 3. Let len be ToUint32(lenValue).
|
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|
-
var len = O.length >>> 0;
|
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|
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|
85
|
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// 4. If IsCallable(callback) is false, throw a TypeError exception.
|
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|
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// See: http://es5.github.com/#x9.11
|
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|
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if (typeof callback !== 'function') {
|
88
|
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throw new TypeError(callback + ' is not a function');
|
89
|
-
}
|
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|
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|
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|
-
// 5. If thisArg was supplied, let T be thisArg; else let T be undefined.
|
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if (arguments.length > 1) {
|
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|
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T = thisArg;
|
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|
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}
|
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|
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|
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|
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// 6. Let A be a new array created as if by the expression new Array(len)
|
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|
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// where Array is the standard built-in constructor with that name and
|
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|
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// len is the value of len.
|
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|
-
A = new Array(len);
|
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|
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|
101
|
-
// 7. Let k be 0
|
102
|
-
k = 0;
|
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|
-
|
104
|
-
// 8. Repeat, while k < len
|
105
|
-
while (k < len) {
|
106
|
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|
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|
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var kValue, mappedValue;
|
108
|
-
|
109
|
-
// a. Let Pk be ToString(k).
|
110
|
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// This is implicit for LHS operands of the in operator
|
111
|
-
// b. Let kPresent be the result of calling the HasProperty internal
|
112
|
-
// method of O with argument Pk.
|
113
|
-
// This step can be combined with c
|
114
|
-
// c. If kPresent is true, then
|
115
|
-
if (k in O) {
|
116
|
-
|
117
|
-
// i. Let kValue be the result of calling the Get internal
|
118
|
-
// method of O with argument Pk.
|
119
|
-
kValue = O[k];
|
120
|
-
|
121
|
-
// ii. Let mappedValue be the result of calling the Call internal
|
122
|
-
// method of callback with T as the this value and argument
|
123
|
-
// list containing kValue, k, and O.
|
124
|
-
mappedValue = callback.call(T, kValue, k, O);
|
125
|
-
|
126
|
-
// iii. Call the DefineOwnProperty internal method of A with arguments
|
127
|
-
// Pk, Property Descriptor
|
128
|
-
// { Value: mappedValue,
|
129
|
-
// Writable: true,
|
130
|
-
// Enumerable: true,
|
131
|
-
// Configurable: true },
|
132
|
-
// and false.
|
133
|
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|
134
|
-
// In browsers that support Object.defineProperty, use the following:
|
135
|
-
// Object.defineProperty(A, k, {
|
136
|
-
// value: mappedValue,
|
137
|
-
// writable: true,
|
138
|
-
// enumerable: true,
|
139
|
-
// configurable: true
|
140
|
-
// });
|
141
|
-
|
142
|
-
// For best browser support, use the following:
|
143
|
-
A[k] = mappedValue;
|
144
|
-
}
|
145
|
-
// d. Increase k by 1.
|
146
|
-
k++;
|
147
|
-
}
|
148
|
-
|
149
|
-
// 9. return A
|
150
|
-
return A;
|
151
|
-
};
|
152
|
-
}
|
@@ -1,33 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
(function(process) {
|
3
|
-
var B = require("../index").Buffer;
|
4
|
-
var test = require("tape");
|
5
|
-
if (process.env.OBJECT_IMPL)
|
6
|
-
B.TYPED_ARRAY_SUPPORT = false;
|
7
|
-
test('base64: ignore whitespace', function(t) {
|
8
|
-
var text = '\n YW9ldQ== ';
|
9
|
-
var buf = new B(text, 'base64');
|
10
|
-
t.equal(buf.toString(), 'aoeu');
|
11
|
-
t.end();
|
12
|
-
});
|
13
|
-
test('base64: strings without padding', function(t) {
|
14
|
-
t.equal((new B('YW9ldQ', 'base64').toString()), 'aoeu');
|
15
|
-
t.end();
|
16
|
-
});
|
17
|
-
test('base64: newline in utf8 -- should not be an issue', function(t) {
|
18
|
-
t.equal(new B('LS0tCnRpdGxlOiBUaHJlZSBkYXNoZXMgbWFya3MgdGhlIHNwb3QKdGFnczoK', 'base64').toString('utf8'), '---\ntitle: Three dashes marks the spot\ntags:\n');
|
19
|
-
t.end();
|
20
|
-
});
|
21
|
-
test('base64: newline in base64 -- should get stripped', function(t) {
|
22
|
-
t.equal(new B('LS0tCnRpdGxlOiBUaHJlZSBkYXNoZXMgbWFya3MgdGhlIHNwb3QKdGFnczoK\nICAtIHlhbWwKICAtIGZyb250LW1hdHRlcgogIC0gZGFzaGVzCmV4cGFuZWQt', 'base64').toString('utf8'), '---\ntitle: Three dashes marks the spot\ntags:\n - yaml\n - front-matter\n - dashes\nexpaned-');
|
23
|
-
t.end();
|
24
|
-
});
|
25
|
-
test('base64: tab characters in base64 - should get stripped', function(t) {
|
26
|
-
t.equal(new B('LS0tCnRpdGxlOiBUaHJlZSBkYXNoZXMgbWFya3MgdGhlIHNwb3QKdGFnczoK\t\t\t\tICAtIHlhbWwKICAtIGZyb250LW1hdHRlcgogIC0gZGFzaGVzCmV4cGFuZWQt', 'base64').toString('utf8'), '---\ntitle: Three dashes marks the spot\ntags:\n - yaml\n - front-matter\n - dashes\nexpaned-');
|
27
|
-
t.end();
|
28
|
-
});
|
29
|
-
test('base64: invalid non-alphanumeric characters -- should be stripped', function(t) {
|
30
|
-
t.equal(new B('!"#$%&\'()*,.:;<=>?@[\\]^`{|}~', 'base64').toString('utf8'), '');
|
31
|
-
t.end();
|
32
|
-
});
|
33
|
-
})(require("process"));
|
@@ -1,58 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
(function(process) {
|
3
|
-
var B = require("../index").Buffer;
|
4
|
-
var test = require("tape");
|
5
|
-
if (process.env.OBJECT_IMPL)
|
6
|
-
B.TYPED_ARRAY_SUPPORT = false;
|
7
|
-
test('buf.constructor is Buffer', function(t) {
|
8
|
-
var buf = new B([1, 2]);
|
9
|
-
t.strictEqual(buf.constructor, B);
|
10
|
-
t.end();
|
11
|
-
});
|
12
|
-
test('convert to Uint8Array in modern browsers', function(t) {
|
13
|
-
if (B.TYPED_ARRAY_SUPPORT) {
|
14
|
-
var buf = new B([1, 2]);
|
15
|
-
var uint8array = new Uint8Array(buf.buffer);
|
16
|
-
t.ok(uint8array instanceof Uint8Array);
|
17
|
-
t.equal(uint8array[0], 1);
|
18
|
-
t.equal(uint8array[1], 2);
|
19
|
-
} else {
|
20
|
-
t.pass('object impl: skipping test');
|
21
|
-
}
|
22
|
-
t.end();
|
23
|
-
});
|
24
|
-
test('indexes from a string', function(t) {
|
25
|
-
var buf = new B('abc');
|
26
|
-
t.equal(buf[0], 97);
|
27
|
-
t.equal(buf[1], 98);
|
28
|
-
t.equal(buf[2], 99);
|
29
|
-
t.end();
|
30
|
-
});
|
31
|
-
test('indexes from an array', function(t) {
|
32
|
-
var buf = new B([97, 98, 99]);
|
33
|
-
t.equal(buf[0], 97);
|
34
|
-
t.equal(buf[1], 98);
|
35
|
-
t.equal(buf[2], 99);
|
36
|
-
t.end();
|
37
|
-
});
|
38
|
-
test('setting index value should modify buffer contents', function(t) {
|
39
|
-
var buf = new B([97, 98, 99]);
|
40
|
-
t.equal(buf[2], 99);
|
41
|
-
t.equal(buf.toString(), 'abc');
|
42
|
-
buf[2] += 10;
|
43
|
-
t.equal(buf[2], 109);
|
44
|
-
t.equal(buf.toString(), 'abm');
|
45
|
-
t.end();
|
46
|
-
});
|
47
|
-
test('storing negative number should cast to unsigned', function(t) {
|
48
|
-
var buf = new B(1);
|
49
|
-
if (B.TYPED_ARRAY_SUPPORT) {
|
50
|
-
buf[0] = -3;
|
51
|
-
t.equal(buf[0], 253);
|
52
|
-
}
|
53
|
-
buf = new B(1);
|
54
|
-
buf.writeInt8(-3, 0);
|
55
|
-
t.equal(buf[0], 253);
|
56
|
-
t.end();
|
57
|
-
});
|
58
|
-
})(require("process"));
|
@@ -1,53 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
(function(process) {
|
3
|
-
var B = require("../index").Buffer;
|
4
|
-
var test = require("tape");
|
5
|
-
if (process.env.OBJECT_IMPL)
|
6
|
-
B.TYPED_ARRAY_SUPPORT = false;
|
7
|
-
test('buffer.compare', function(t) {
|
8
|
-
var b = new B(1).fill('a');
|
9
|
-
var c = new B(1).fill('c');
|
10
|
-
var d = new B(2).fill('aa');
|
11
|
-
t.equal(b.compare(c), -1);
|
12
|
-
t.equal(c.compare(d), 1);
|
13
|
-
t.equal(d.compare(b), 1);
|
14
|
-
t.equal(b.compare(d), -1);
|
15
|
-
t.equal(B.compare(b, c), -1);
|
16
|
-
t.equal(B.compare(c, d), 1);
|
17
|
-
t.equal(B.compare(d, b), 1);
|
18
|
-
t.equal(B.compare(b, d), -1);
|
19
|
-
t.end();
|
20
|
-
});
|
21
|
-
test('buffer.compare argument validation', function(t) {
|
22
|
-
t.throws(function() {
|
23
|
-
var b = new B(1);
|
24
|
-
B.compare(b, 'abc');
|
25
|
-
});
|
26
|
-
t.throws(function() {
|
27
|
-
var b = new B(1);
|
28
|
-
B.compare('abc', b);
|
29
|
-
});
|
30
|
-
t.throws(function() {
|
31
|
-
var b = new B(1);
|
32
|
-
b.compare('abc');
|
33
|
-
});
|
34
|
-
t.end();
|
35
|
-
});
|
36
|
-
test('buffer.equals', function(t) {
|
37
|
-
var b = new B(5).fill('abcdf');
|
38
|
-
var c = new B(5).fill('abcdf');
|
39
|
-
var d = new B(5).fill('abcde');
|
40
|
-
var e = new B(6).fill('abcdef');
|
41
|
-
t.ok(b.equals(c));
|
42
|
-
t.ok(!c.equals(d));
|
43
|
-
t.ok(!d.equals(e));
|
44
|
-
t.end();
|
45
|
-
});
|
46
|
-
test('buffer.equals argument validation', function(t) {
|
47
|
-
t.throws(function() {
|
48
|
-
var b = new B(1);
|
49
|
-
b.equals('abc');
|
50
|
-
});
|
51
|
-
t.end();
|
52
|
-
});
|
53
|
-
})(require("process"));
|
@@ -1,132 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
(function(process) {
|
3
|
-
var B = require("../index").Buffer;
|
4
|
-
var test = require("tape");
|
5
|
-
if (process.env.OBJECT_IMPL)
|
6
|
-
B.TYPED_ARRAY_SUPPORT = false;
|
7
|
-
test('new buffer from array', function(t) {
|
8
|
-
t.equal(new B([1, 2, 3]).toString(), '\u0001\u0002\u0003');
|
9
|
-
t.end();
|
10
|
-
});
|
11
|
-
test('new buffer from array w/ negatives', function(t) {
|
12
|
-
t.equal(new B([-1, -2, -3]).toString('hex'), 'fffefd');
|
13
|
-
t.end();
|
14
|
-
});
|
15
|
-
test('new buffer from array with mixed signed input', function(t) {
|
16
|
-
t.equal(new B([-255, 255, -128, 128, 512, -512, 511, -511]).toString('hex'), '01ff80800000ff01');
|
17
|
-
t.end();
|
18
|
-
});
|
19
|
-
test('new buffer from string', function(t) {
|
20
|
-
t.equal(new B('hey', 'utf8').toString(), 'hey');
|
21
|
-
t.end();
|
22
|
-
});
|
23
|
-
test('new buffer from buffer', function(t) {
|
24
|
-
var b1 = new B('asdf');
|
25
|
-
var b2 = new B(b1);
|
26
|
-
t.equal(b1.toString('hex'), b2.toString('hex'));
|
27
|
-
t.end();
|
28
|
-
});
|
29
|
-
test('new buffer from Uint8Array', function(t) {
|
30
|
-
if (typeof Uint8Array !== 'undefined') {
|
31
|
-
var b1 = new Uint8Array([0, 1, 2, 3]);
|
32
|
-
var b2 = new B(b1);
|
33
|
-
t.equal(b1.length, b2.length);
|
34
|
-
t.equal(b1[0], 0);
|
35
|
-
t.equal(b1[1], 1);
|
36
|
-
t.equal(b1[2], 2);
|
37
|
-
t.equal(b1[3], 3);
|
38
|
-
t.equal(b1[4], undefined);
|
39
|
-
}
|
40
|
-
t.end();
|
41
|
-
});
|
42
|
-
test('new buffer from Uint16Array', function(t) {
|
43
|
-
if (typeof Uint16Array !== 'undefined') {
|
44
|
-
var b1 = new Uint16Array([0, 1, 2, 3]);
|
45
|
-
var b2 = new B(b1);
|
46
|
-
t.equal(b1.length, b2.length);
|
47
|
-
t.equal(b1[0], 0);
|
48
|
-
t.equal(b1[1], 1);
|
49
|
-
t.equal(b1[2], 2);
|
50
|
-
t.equal(b1[3], 3);
|
51
|
-
t.equal(b1[4], undefined);
|
52
|
-
}
|
53
|
-
t.end();
|
54
|
-
});
|
55
|
-
test('new buffer from Uint32Array', function(t) {
|
56
|
-
if (typeof Uint32Array !== 'undefined') {
|
57
|
-
var b1 = new Uint32Array([0, 1, 2, 3]);
|
58
|
-
var b2 = new B(b1);
|
59
|
-
t.equal(b1.length, b2.length);
|
60
|
-
t.equal(b1[0], 0);
|
61
|
-
t.equal(b1[1], 1);
|
62
|
-
t.equal(b1[2], 2);
|
63
|
-
t.equal(b1[3], 3);
|
64
|
-
t.equal(b1[4], undefined);
|
65
|
-
}
|
66
|
-
t.end();
|
67
|
-
});
|
68
|
-
test('new buffer from Int16Array', function(t) {
|
69
|
-
if (typeof Int16Array !== 'undefined') {
|
70
|
-
var b1 = new Int16Array([0, 1, 2, 3]);
|
71
|
-
var b2 = new B(b1);
|
72
|
-
t.equal(b1.length, b2.length);
|
73
|
-
t.equal(b1[0], 0);
|
74
|
-
t.equal(b1[1], 1);
|
75
|
-
t.equal(b1[2], 2);
|
76
|
-
t.equal(b1[3], 3);
|
77
|
-
t.equal(b1[4], undefined);
|
78
|
-
}
|
79
|
-
t.end();
|
80
|
-
});
|
81
|
-
test('new buffer from Int32Array', function(t) {
|
82
|
-
if (typeof Int32Array !== 'undefined') {
|
83
|
-
var b1 = new Int32Array([0, 1, 2, 3]);
|
84
|
-
var b2 = new B(b1);
|
85
|
-
t.equal(b1.length, b2.length);
|
86
|
-
t.equal(b1[0], 0);
|
87
|
-
t.equal(b1[1], 1);
|
88
|
-
t.equal(b1[2], 2);
|
89
|
-
t.equal(b1[3], 3);
|
90
|
-
t.equal(b1[4], undefined);
|
91
|
-
}
|
92
|
-
t.end();
|
93
|
-
});
|
94
|
-
test('new buffer from Float32Array', function(t) {
|
95
|
-
if (typeof Float32Array !== 'undefined') {
|
96
|
-
var b1 = new Float32Array([0, 1, 2, 3]);
|
97
|
-
var b2 = new B(b1);
|
98
|
-
t.equal(b1.length, b2.length);
|
99
|
-
t.equal(b1[0], 0);
|
100
|
-
t.equal(b1[1], 1);
|
101
|
-
t.equal(b1[2], 2);
|
102
|
-
t.equal(b1[3], 3);
|
103
|
-
t.equal(b1[4], undefined);
|
104
|
-
}
|
105
|
-
t.end();
|
106
|
-
});
|
107
|
-
test('new buffer from Float64Array', function(t) {
|
108
|
-
if (typeof Float64Array !== 'undefined') {
|
109
|
-
var b1 = new Float64Array([0, 1, 2, 3]);
|
110
|
-
var b2 = new B(b1);
|
111
|
-
t.equal(b1.length, b2.length);
|
112
|
-
t.equal(b1[0], 0);
|
113
|
-
t.equal(b1[1], 1);
|
114
|
-
t.equal(b1[2], 2);
|
115
|
-
t.equal(b1[3], 3);
|
116
|
-
t.equal(b1[4], undefined);
|
117
|
-
}
|
118
|
-
t.end();
|
119
|
-
});
|
120
|
-
test('new buffer from buffer.toJSON() output', function(t) {
|
121
|
-
if (typeof JSON === 'undefined') {
|
122
|
-
t.end();
|
123
|
-
return;
|
124
|
-
}
|
125
|
-
var buf = new B('test');
|
126
|
-
var json = JSON.stringify(buf);
|
127
|
-
var obj = JSON.parse(json);
|
128
|
-
var copy = new B(obj);
|
129
|
-
t.ok(buf.equals(copy));
|
130
|
-
t.end();
|
131
|
-
});
|
132
|
-
})(require("process"));
|
@@ -1,21 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
(function(process) {
|
3
|
-
var B = require("../index").Buffer;
|
4
|
-
var test = require("tape");
|
5
|
-
if (process.env.OBJECT_IMPL)
|
6
|
-
B.TYPED_ARRAY_SUPPORT = false;
|
7
|
-
test('.get (deprecated)', function(t) {
|
8
|
-
var b = new B([7, 42]);
|
9
|
-
t.equal(b.get(0), 7);
|
10
|
-
t.equal(b.get(1), 42);
|
11
|
-
t.end();
|
12
|
-
});
|
13
|
-
test('.set (deprecated)', function(t) {
|
14
|
-
var b = new B(2);
|
15
|
-
b.set(7, 0);
|
16
|
-
b.set(42, 1);
|
17
|
-
t.equal(b[0], 7);
|
18
|
-
t.equal(b[1], 42);
|
19
|
-
t.end();
|
20
|
-
});
|
21
|
-
})(require("process"));
|
@@ -1,105 +0,0 @@
|
|
1
|
-
/* */
|
2
|
-
(function(process) {
|
3
|
-
var B = require("../index").Buffer;
|
4
|
-
var test = require("tape");
|
5
|
-
if (process.env.OBJECT_IMPL)
|
6
|
-
B.TYPED_ARRAY_SUPPORT = false;
|
7
|
-
test('detect utf16 surrogate pairs', function(t) {
|
8
|
-
var text = '\uD83D\uDE38' + '\uD83D\uDCAD' + '\uD83D\uDC4D';
|
9
|
-
var buf = new B(text);
|
10
|
-
t.equal(text, buf.toString());
|
11
|
-
t.end();
|
12
|
-
});
|
13
|
-
test('replace orphaned utf16 surrogate lead code point', function(t) {
|
14
|
-
var text = '\uD83D\uDE38' + '\uD83D' + '\uD83D\uDC4D';
|
15
|
-
var buf = new B(text);
|
16
|
-
t.deepEqual(buf, new B([0xf0, 0x9f, 0x98, 0xb8, 0xef, 0xbf, 0xbd, 0xf0, 0x9f, 0x91, 0x8d]));
|
17
|
-
t.end();
|
18
|
-
});
|
19
|
-
test('replace orphaned utf16 surrogate trail code point', function(t) {
|
20
|
-
var text = '\uD83D\uDE38' + '\uDCAD' + '\uD83D\uDC4D';
|
21
|
-
var buf = new B(text);
|
22
|
-
t.deepEqual(buf, new B([0xf0, 0x9f, 0x98, 0xb8, 0xef, 0xbf, 0xbd, 0xf0, 0x9f, 0x91, 0x8d]));
|
23
|
-
t.end();
|
24
|
-
});
|
25
|
-
test('do not write partial utf16 code units', function(t) {
|
26
|
-
var f = new B([0, 0, 0, 0, 0]);
|
27
|
-
t.equal(f.length, 5);
|
28
|
-
var size = f.write('あいうえお', 'utf16le');
|
29
|
-
t.equal(size, 4);
|
30
|
-
t.deepEqual(f, new B([0x42, 0x30, 0x44, 0x30, 0x00]));
|
31
|
-
t.end();
|
32
|
-
});
|
33
|
-
test('handle partial utf16 code points when encoding to utf8 the way node does', function(t) {
|
34
|
-
var text = '\uD83D\uDE38' + '\uD83D\uDC4D';
|
35
|
-
var buf = new B(8);
|
36
|
-
buf.fill(0);
|
37
|
-
buf.write(text);
|
38
|
-
t.deepEqual(buf, new B([0xf0, 0x9f, 0x98, 0xb8, 0xf0, 0x9f, 0x91, 0x8d]));
|
39
|
-
buf = new B(7);
|
40
|
-
buf.fill(0);
|
41
|
-
buf.write(text);
|
42
|
-
t.deepEqual(buf, new B([0xf0, 0x9f, 0x98, 0xb8, 0x00, 0x00, 0x00]));
|
43
|
-
buf = new B(6);
|
44
|
-
buf.fill(0);
|
45
|
-
buf.write(text);
|
46
|
-
t.deepEqual(buf, new B([0xf0, 0x9f, 0x98, 0xb8, 0x00, 0x00]));
|
47
|
-
buf = new B(5);
|
48
|
-
buf.fill(0);
|
49
|
-
buf.write(text);
|
50
|
-
t.deepEqual(buf, new B([0xf0, 0x9f, 0x98, 0xb8, 0x00]));
|
51
|
-
buf = new B(4);
|
52
|
-
buf.fill(0);
|
53
|
-
buf.write(text);
|
54
|
-
t.deepEqual(buf, new B([0xf0, 0x9f, 0x98, 0xb8]));
|
55
|
-
buf = new B(3);
|
56
|
-
buf.fill(0);
|
57
|
-
buf.write(text);
|
58
|
-
t.deepEqual(buf, new B([0x00, 0x00, 0x00]));
|
59
|
-
buf = new B(2);
|
60
|
-
buf.fill(0);
|
61
|
-
buf.write(text);
|
62
|
-
t.deepEqual(buf, new B([0x00, 0x00]));
|
63
|
-
buf = new B(1);
|
64
|
-
buf.fill(0);
|
65
|
-
buf.write(text);
|
66
|
-
t.deepEqual(buf, new B([0x00]));
|
67
|
-
t.end();
|
68
|
-
});
|
69
|
-
test('handle invalid utf16 code points when encoding to utf8 the way node does', function(t) {
|
70
|
-
var text = 'a' + '\uDE38\uD83D' + 'b';
|
71
|
-
var buf = new B(8);
|
72
|
-
buf.fill(0);
|
73
|
-
buf.write(text);
|
74
|
-
t.deepEqual(buf, new B([0x61, 0xef, 0xbf, 0xbd, 0xef, 0xbf, 0xbd, 0x62]));
|
75
|
-
buf = new B(7);
|
76
|
-
buf.fill(0);
|
77
|
-
buf.write(text);
|
78
|
-
t.deepEqual(buf, new B([0x61, 0xef, 0xbf, 0xbd, 0xef, 0xbf, 0xbd]));
|
79
|
-
buf = new B(6);
|
80
|
-
buf.fill(0);
|
81
|
-
buf.write(text);
|
82
|
-
t.deepEqual(buf, new B([0x61, 0xef, 0xbf, 0xbd, 0x00, 0x00]));
|
83
|
-
buf = new B(5);
|
84
|
-
buf.fill(0);
|
85
|
-
buf.write(text);
|
86
|
-
t.deepEqual(buf, new B([0x61, 0xef, 0xbf, 0xbd, 0x00]));
|
87
|
-
buf = new B(4);
|
88
|
-
buf.fill(0);
|
89
|
-
buf.write(text);
|
90
|
-
t.deepEqual(buf, new B([0x61, 0xef, 0xbf, 0xbd]));
|
91
|
-
buf = new B(3);
|
92
|
-
buf.fill(0);
|
93
|
-
buf.write(text);
|
94
|
-
t.deepEqual(buf, new B([0x61, 0x00, 0x00]));
|
95
|
-
buf = new B(2);
|
96
|
-
buf.fill(0);
|
97
|
-
buf.write(text);
|
98
|
-
t.deepEqual(buf, new B([0x61, 0x00]));
|
99
|
-
buf = new B(1);
|
100
|
-
buf.fill(0);
|
101
|
-
buf.write(text);
|
102
|
-
t.deepEqual(buf, new B([0x61]));
|
103
|
-
t.end();
|
104
|
-
});
|
105
|
-
})(require("process"));
|