sequenceserver 2.0.0.rc8 → 2.1.0

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Files changed (758) hide show
  1. checksums.yaml +4 -4
  2. data/bin/sequenceserver +22 -30
  3. data/lib/sequenceserver/api_errors.rb +29 -3
  4. data/lib/sequenceserver/blast/constants.rb +1 -1
  5. data/lib/sequenceserver/blast/hit.rb +5 -16
  6. data/lib/sequenceserver/blast/job.rb +49 -24
  7. data/lib/sequenceserver/blast/report.rb +38 -30
  8. data/lib/sequenceserver/config.rb +52 -27
  9. data/lib/sequenceserver/database.rb +69 -9
  10. data/lib/sequenceserver/job.rb +14 -4
  11. data/lib/sequenceserver/job_remover.rb +25 -29
  12. data/lib/sequenceserver/makeblastdb.rb +40 -45
  13. data/lib/sequenceserver/refinements.rb +15 -0
  14. data/lib/sequenceserver/routes.rb +70 -4
  15. data/lib/sequenceserver/sequence.rb +8 -7
  16. data/lib/sequenceserver/sys.rb +2 -2
  17. data/lib/sequenceserver/version.rb +1 -1
  18. data/lib/sequenceserver/zip_file_generator.rb +56 -0
  19. data/lib/sequenceserver.rb +16 -11
  20. data/public/config.js +62 -55
  21. data/public/css/fonts.css +23 -22
  22. data/public/css/grapher.css +598 -594
  23. data/public/css/sequenceserver.css +130 -27
  24. data/public/css/sequenceserver.min.css +3 -3
  25. data/public/js/alignment_exporter.js +30 -22
  26. data/public/js/circos.js +370 -234
  27. data/public/js/cloud_share_modal.js +216 -0
  28. data/public/js/databases.js +144 -0
  29. data/public/js/databases_tree.js +144 -0
  30. data/public/js/dnd.js +164 -0
  31. data/public/js/download_fasta.js +1 -1
  32. data/public/js/error_modal.js +4 -11
  33. data/public/js/exporter.js +7 -3
  34. data/public/js/form.js +260 -0
  35. data/public/js/grapher.js +113 -106
  36. data/public/js/hit.js +84 -67
  37. data/public/js/hits_overview.js +3 -3
  38. data/public/js/hsp.js +343 -288
  39. data/public/js/jquery_world.js +4 -4
  40. data/public/js/length_distribution.js +5 -5
  41. data/public/js/mailto.js +36 -0
  42. data/public/js/options.js +84 -0
  43. data/public/js/query.js +321 -64
  44. data/public/js/report.js +322 -288
  45. data/public/js/report_root.js +75 -0
  46. data/public/js/search.js +28 -992
  47. data/public/js/search_button.js +195 -0
  48. data/public/js/sequence.js +2409 -2411
  49. data/public/js/sequence_modal.js +152 -159
  50. data/public/js/share_url.js +23 -0
  51. data/public/js/sidebar.js +265 -86
  52. data/public/js/svgExporter.js +12 -12
  53. data/public/js/tests/database.spec.js +60 -0
  54. data/public/js/tests/mock_data/databases.json +91 -0
  55. data/public/js/tests/mock_data/long_response.json +269 -0
  56. data/public/js/tests/mock_data/short_response.json +2240 -0
  57. data/public/js/tests/report.spec.js +99 -0
  58. data/public/js/tests/search_button.spec.js +14 -0
  59. data/public/js/tests/search_query.spec.js +41 -0
  60. data/public/js/visualisation_helpers.js +4 -5
  61. data/public/packages/circosJS@1.7.0.js +1640 -0
  62. data/public/packages/jquery-ui@1.11.4.js +16624 -0
  63. data/public/sequenceserver-report.min.js +2425 -19
  64. data/public/sequenceserver-search.min.js +2337 -11
  65. data/public/vendor/github/jspm/nodelibs-assert@0.1.0/index.js +2 -0
  66. data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-assert@0.1.0}/package.json +1 -1
  67. data/public/vendor/github/jspm/nodelibs-assert@0.1.0.js +1 -0
  68. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1/package.json +6 -0
  69. data/public/vendor/github/jspm/nodelibs-buffer@0.1.1.js +1 -0
  70. data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/package.json +2 -2
  71. data/public/vendor/github/jspm/nodelibs-process@0.1.2.js +1 -0
  72. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/index.js +2 -0
  73. data/public/vendor/github/jspm/nodelibs-vm@0.1.0/package.json +6 -0
  74. data/public/vendor/github/jspm/nodelibs-vm@0.1.0.js +1 -0
  75. data/public/vendor/github/vakata/jstree@3.3.8/LICENSE-MIT +22 -0
  76. data/public/vendor/github/vakata/jstree@3.3.8/README.md +663 -0
  77. data/public/vendor/github/vakata/jstree@3.3.8/bower.json +33 -0
  78. data/public/vendor/github/vakata/jstree@3.3.8/component.json +28 -0
  79. data/public/vendor/github/vakata/jstree@3.3.8/composer.json +46 -0
  80. data/public/vendor/github/vakata/jstree@3.3.8/demo/README.md +2 -0
  81. data/public/vendor/github/vakata/jstree@3.3.8/demo/basic/index.html +146 -0
  82. data/public/vendor/github/vakata/jstree@3.3.8/demo/basic/root.json +1 -0
  83. data/public/vendor/github/vakata/jstree@3.3.8/dist/jstree.js +8612 -0
  84. data/public/vendor/github/vakata/jstree@3.3.8/dist/jstree.min.js +6 -0
  85. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/32px.png +0 -0
  86. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/40px.png +0 -0
  87. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/style.css +1102 -0
  88. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/style.min.css +1 -0
  89. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/throbber.gif +0 -0
  90. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/32px.png +0 -0
  91. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/40px.png +0 -0
  92. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/style.css +1146 -0
  93. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/style.min.css +1 -0
  94. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/throbber.gif +0 -0
  95. data/public/vendor/github/vakata/jstree@3.3.8/gruntfile.js +242 -0
  96. data/public/vendor/github/vakata/jstree@3.3.8/jstree.jquery.json +28 -0
  97. data/public/vendor/github/vakata/jstree@3.3.8/package.json +58 -0
  98. data/public/vendor/github/vakata/jstree@3.3.8/src/intro.js +14 -0
  99. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.changed.js +69 -0
  100. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.checkbox.js +976 -0
  101. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.conditionalselect.js +38 -0
  102. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.contextmenu.js +661 -0
  103. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.dnd.js +669 -0
  104. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.js +4931 -0
  105. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.massload.js +137 -0
  106. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.search.js +421 -0
  107. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.sort.js +74 -0
  108. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.state.js +138 -0
  109. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.types.js +372 -0
  110. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.unique.js +164 -0
  111. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.wholerow.js +122 -0
  112. data/public/vendor/github/vakata/jstree@3.3.8/src/misc.js +656 -0
  113. data/public/vendor/github/vakata/jstree@3.3.8/src/outro.js +1 -0
  114. data/public/vendor/github/vakata/jstree@3.3.8/src/sample.js +93 -0
  115. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/base.less +93 -0
  116. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/32px.png +0 -0
  117. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/40px.png +0 -0
  118. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/style.css +1102 -0
  119. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/style.less +22 -0
  120. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/throbber.gif +0 -0
  121. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/32px.png +0 -0
  122. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/40px.png +0 -0
  123. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/style.css +1146 -0
  124. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/style.less +50 -0
  125. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/throbber.gif +0 -0
  126. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/main.less +77 -0
  127. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/mixins.less +104 -0
  128. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/responsive.less +67 -0
  129. data/public/vendor/github/vakata/jstree@3.3.8/src/vakata-jstree.js +38 -0
  130. data/public/vendor/github/vakata/jstree@3.3.8/test/unit/index.html +16 -0
  131. data/public/vendor/github/vakata/jstree@3.3.8/test/unit/libs/qunit.css +244 -0
  132. data/public/vendor/github/vakata/jstree@3.3.8/test/unit/libs/qunit.js +2212 -0
  133. data/public/vendor/github/vakata/jstree@3.3.8/test/unit/test.js +11 -0
  134. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/desktop/index.html +44 -0
  135. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/mobile/index.html +42 -0
  136. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/desktop/desktop.png +0 -0
  137. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/desktop/home.png +0 -0
  138. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/mobile/home.png +0 -0
  139. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/mobile/mobile.png +0 -0
  140. data/public/vendor/github/vakata/jstree@3.3.8.js +3 -0
  141. data/public/vendor/npm/assert@1.5.0/CHANGELOG.md +8 -0
  142. data/public/vendor/npm/assert@1.5.0/README.md +105 -0
  143. data/public/vendor/npm/assert@1.5.0/assert.js +327 -0
  144. data/public/vendor/npm/assert@1.5.0/package.json +32 -0
  145. data/public/vendor/npm/assert@1.5.0/test.js +288 -0
  146. data/public/vendor/npm/assert@1.5.0.js +1 -0
  147. data/public/vendor/npm/{base64-js@0.0.8/LICENSE.MIT → base64-js@1.5.1/LICENSE} +1 -1
  148. data/public/vendor/npm/{base64-js@0.0.8 → base64-js@1.5.1}/README.md +10 -7
  149. data/public/vendor/npm/base64-js@1.5.1/base64js.min.js +3 -0
  150. data/public/vendor/npm/base64-js@1.5.1/index.d.ts +3 -0
  151. data/public/vendor/npm/base64-js@1.5.1/index.js +151 -0
  152. data/public/vendor/npm/base64-js@1.5.1/package.json +47 -0
  153. data/public/vendor/npm/base64-js@1.5.1.js +1 -0
  154. data/public/vendor/npm/buffer@5.7.1/AUTHORS.md +70 -0
  155. data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/README.md +111 -41
  156. data/public/vendor/npm/buffer@5.7.1/index.d.ts +186 -0
  157. data/public/vendor/npm/buffer@5.7.1/index.js +1817 -0
  158. data/public/vendor/npm/buffer@5.7.1/package.json +96 -0
  159. data/public/vendor/npm/buffer@5.7.1.js +1 -0
  160. data/public/vendor/npm/core-util-is@1.0.3/LICENSE +19 -0
  161. data/public/vendor/npm/core-util-is@1.0.3/lib/util.js +64 -0
  162. data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/package.json +13 -1
  163. data/public/vendor/npm/core-util-is@1.0.3.js +1 -0
  164. data/public/vendor/npm/events@1.0.2/tests/add-listeners.js +2 -2
  165. data/public/vendor/npm/events@1.0.2/tests/check-listener-leaks.js +3 -3
  166. data/public/vendor/npm/events@1.0.2/tests/common.js +1 -1
  167. data/public/vendor/npm/events@1.0.2/tests/index.js +13 -13
  168. data/public/vendor/npm/events@1.0.2/tests/listeners-side-effects.js +2 -2
  169. data/public/vendor/npm/events@1.0.2/tests/listeners.js +2 -2
  170. data/public/vendor/npm/events@1.0.2/tests/max-listeners.js +2 -2
  171. data/public/vendor/npm/events@1.0.2/tests/modify-in-emit.js +2 -2
  172. data/public/vendor/npm/events@1.0.2/tests/num-args.js +2 -2
  173. data/public/vendor/npm/events@1.0.2/tests/once.js +2 -2
  174. data/public/vendor/npm/events@1.0.2/tests/remove-all-listeners.js +3 -3
  175. data/public/vendor/npm/events@1.0.2/tests/remove-listeners.js +3 -3
  176. data/public/vendor/npm/events@1.0.2/tests/set-max-listeners-side-effects.js +2 -2
  177. data/public/vendor/npm/events@1.0.2/tests/subclass.js +3 -3
  178. data/public/vendor/npm/events@1.0.2.js +1 -1
  179. data/public/vendor/npm/ieee754@1.2.1/LICENSE +11 -0
  180. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/README.md +12 -8
  181. data/public/vendor/npm/ieee754@1.2.1/index.d.ts +10 -0
  182. data/public/vendor/npm/{ieee754@1.1.6 → ieee754@1.2.1}/index.js +6 -6
  183. data/public/vendor/npm/ieee754@1.2.1/package.json +52 -0
  184. data/public/vendor/npm/ieee754@1.2.1.js +1 -0
  185. data/public/vendor/npm/{is-array@1.0.1 → indexof@0.0.1}/Makefile +3 -3
  186. data/public/vendor/npm/indexof@0.0.1/Readme.md +15 -0
  187. data/public/vendor/npm/indexof@0.0.1/component.json +10 -0
  188. data/public/vendor/npm/indexof@0.0.1/index.js +11 -0
  189. data/public/vendor/npm/indexof@0.0.1/package.json +12 -0
  190. data/public/vendor/npm/indexof@0.0.1.js +1 -0
  191. data/public/vendor/npm/inherits@2.0.1/inherits.js +1 -1
  192. data/public/vendor/npm/inherits@2.0.1.js +1 -1
  193. data/public/vendor/npm/isarray@0.0.1.js +1 -1
  194. data/public/vendor/npm/js-tokens@4.0.0/index.js +23 -0
  195. data/public/vendor/npm/js-tokens@4.0.0/package.json +30 -0
  196. data/public/vendor/npm/js-tokens@4.0.0.js +1 -0
  197. data/public/vendor/npm/loose-envify@1.4.0/LICENSE +21 -0
  198. data/public/vendor/npm/loose-envify@1.4.0/README.md +45 -0
  199. data/public/vendor/npm/loose-envify@1.4.0/cli.js +12 -0
  200. data/public/vendor/npm/loose-envify@1.4.0/custom.js +3 -0
  201. data/public/vendor/npm/loose-envify@1.4.0/index.js +5 -0
  202. data/public/vendor/npm/loose-envify@1.4.0/loose-envify.js +33 -0
  203. data/public/vendor/npm/loose-envify@1.4.0/package.json +36 -0
  204. data/public/vendor/npm/loose-envify@1.4.0/replace.js +52 -0
  205. data/public/vendor/npm/loose-envify@1.4.0.js +1 -0
  206. data/public/vendor/npm/object-assign@4.1.1/index.js +90 -0
  207. data/public/vendor/npm/object-assign@4.1.1/package.json +42 -0
  208. data/public/vendor/npm/object-assign@4.1.1.js +1 -0
  209. data/public/vendor/npm/path-browserify@0.0.0/index.js +1 -1
  210. data/public/vendor/npm/path-browserify@0.0.0.js +1 -1
  211. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/README.md +4 -1
  212. data/public/vendor/npm/process@0.11.10/browser.js +184 -0
  213. data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/package.json +10 -1
  214. data/public/vendor/npm/process@0.11.10/test.js +185 -0
  215. data/public/vendor/npm/process@0.11.10.js +1 -0
  216. data/public/vendor/npm/react-dom@18.0.0/LICENSE +21 -0
  217. data/public/vendor/npm/react-dom@18.0.0/README.md +50 -0
  218. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.development.js +4771 -0
  219. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.browser.production.min.js +85 -0
  220. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.development.js +4813 -0
  221. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server-legacy.node.production.min.js +1705 -0
  222. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.development.js +4746 -0
  223. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.browser.production.min.js +90 -0
  224. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.development.js +4714 -0
  225. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-server.node.production.min.js +1746 -0
  226. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.development.js +1017 -0
  227. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom-test-utils.production.min.js +617 -0
  228. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.development.js +20092 -0
  229. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.production.min.js +322 -0
  230. data/public/vendor/npm/react-dom@18.0.0/cjs/react-dom.profiling.min.js +364 -0
  231. data/public/vendor/npm/react-dom@18.0.0/client.js +27 -0
  232. data/public/vendor/npm/react-dom@18.0.0/index.js +23 -0
  233. data/public/vendor/npm/react-dom@18.0.0/package.json +62 -0
  234. data/public/vendor/npm/react-dom@18.0.0/profiling.js +23 -0
  235. data/public/vendor/npm/react-dom@18.0.0/server.browser.js +19 -0
  236. data/public/vendor/npm/react-dom@18.0.0/server.js +3 -0
  237. data/public/vendor/npm/react-dom@18.0.0/server.node.js +19 -0
  238. data/public/vendor/npm/react-dom@18.0.0/test-utils.js +9 -0
  239. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.development.js +4770 -0
  240. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server-legacy.browser.production.min.js +72 -0
  241. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.development.js +4745 -0
  242. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-server.browser.production.min.js +74 -0
  243. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.development.js +1013 -0
  244. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom-test-utils.production.min.js +625 -0
  245. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.development.js +20106 -0
  246. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.production.min.js +269 -0
  247. data/public/vendor/npm/react-dom@18.0.0/umd/react-dom.profiling.min.js +285 -0
  248. data/public/vendor/npm/react-dom@18.0.0.js +1 -0
  249. data/public/vendor/npm/react@18.0.0/LICENSE +21 -0
  250. data/public/vendor/npm/react@18.0.0/README.md +13 -0
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  729. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-base64.js +0 -26
  730. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-binary-search.js +0 -37
  731. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-dog-fooding.js +0 -76
  732. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-source-map-consumer.js +0 -426
  733. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-source-map-generator.js +0 -480
  734. data/public/vendor/npm/source-map@0.1.31/test/source-map/test-source-node.js +0 -307
  735. data/public/vendor/npm/source-map@0.1.31/test/source-map/util.js +0 -84
  736. data/public/vendor/npm/source-map@0.1.31.js +0 -1
  737. data/public/vendor/npm/through@2.3.8/LICENSE.APACHE2 +0 -15
  738. data/public/vendor/npm/through@2.3.8/LICENSE.MIT +0 -24
  739. data/public/vendor/npm/through@2.3.8/index.js +0 -93
  740. data/public/vendor/npm/through@2.3.8/package.json +0 -36
  741. data/public/vendor/npm/through@2.3.8/readme.markdown +0 -64
  742. data/public/vendor/npm/through@2.3.8/test/async.js +0 -26
  743. data/public/vendor/npm/through@2.3.8/test/auto-destroy.js +0 -26
  744. data/public/vendor/npm/through@2.3.8/test/buffering.js +0 -57
  745. data/public/vendor/npm/through@2.3.8/test/end.js +0 -37
  746. data/public/vendor/npm/through@2.3.8/test/index.js +0 -98
  747. data/public/vendor/npm/through@2.3.8/test.js +0 -2
  748. data/public/vendor/npm/through@2.3.8.js +0 -1
  749. data/views/_options.erb +0 -135
  750. /data/public/vendor/github/jspm/{nodelibs-buffer@0.1.0 → nodelibs-buffer@0.1.1}/index.js +0 -0
  751. /data/public/vendor/github/jspm/{nodelibs-process@0.1.1 → nodelibs-process@0.1.2}/index.js +0 -0
  752. /data/public/vendor/npm/{readable-stream@1.1.13 → assert@1.5.0}/LICENSE +0 -0
  753. /data/public/vendor/npm/{buffer@3.4.3 → buffer@5.7.1}/LICENSE +0 -0
  754. /data/public/vendor/npm/{core-util-is@1.0.1 → core-util-is@1.0.3}/README.md +0 -0
  755. /data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/LICENSE +0 -0
  756. /data/public/vendor/npm/{process@0.10.1 → process@0.11.10}/index.js +0 -0
  757. /data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/README.md +0 -0
  758. /data/public/vendor/npm/{readable-stream@1.1.13 → readable-stream@1.1.14}/float.patch +0 -0
@@ -1,27 +0,0 @@
1
- /**
2
- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule ViewportMetrics
10
- */
11
-
12
- 'use strict';
13
-
14
- var ViewportMetrics = {
15
-
16
- currentScrollLeft: 0,
17
-
18
- currentScrollTop: 0,
19
-
20
- refreshScrollValues: function(scrollPosition) {
21
- ViewportMetrics.currentScrollLeft = scrollPosition.x;
22
- ViewportMetrics.currentScrollTop = scrollPosition.y;
23
- }
24
-
25
- };
26
-
27
- module.exports = ViewportMetrics;
@@ -1,26 +0,0 @@
1
- /* */
2
- (function(process) {
3
- 'use strict';
4
- var invariant = require("./invariant");
5
- function accumulateInto(current, next) {
6
- ("production" !== process.env.NODE_ENV ? invariant(next != null, 'accumulateInto(...): Accumulated items must not be null or undefined.') : invariant(next != null));
7
- if (current == null) {
8
- return next;
9
- }
10
- var currentIsArray = Array.isArray(current);
11
- var nextIsArray = Array.isArray(next);
12
- if (currentIsArray && nextIsArray) {
13
- current.push.apply(current, next);
14
- return current;
15
- }
16
- if (currentIsArray) {
17
- current.push(next);
18
- return current;
19
- }
20
- if (nextIsArray) {
21
- return [current].concat(next);
22
- }
23
- return [current, next];
24
- }
25
- module.exports = accumulateInto;
26
- })(require("process"));
@@ -1,32 +0,0 @@
1
- /**
2
- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule adler32
10
- */
11
-
12
- /* jslint bitwise:true */
13
-
14
- 'use strict';
15
-
16
- var MOD = 65521;
17
-
18
- // This is a clean-room implementation of adler32 designed for detecting
19
- // if markup is not what we expect it to be. It does not need to be
20
- // cryptographically strong, only reasonably good at detecting if markup
21
- // generated on the server is different than that on the client.
22
- function adler32(data) {
23
- var a = 1;
24
- var b = 0;
25
- for (var i = 0; i < data.length; i++) {
26
- a = (a + data.charCodeAt(i)) % MOD;
27
- b = (b + a) % MOD;
28
- }
29
- return a | (b << 16);
30
- }
31
-
32
- module.exports = adler32;
@@ -1,30 +0,0 @@
1
- /**
2
- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule camelize
10
- * @typechecks
11
- */
12
-
13
- var _hyphenPattern = /-(.)/g;
14
-
15
- /**
16
- * Camelcases a hyphenated string, for example:
17
- *
18
- * > camelize('background-color')
19
- * < "backgroundColor"
20
- *
21
- * @param {string} string
22
- * @return {string}
23
- */
24
- function camelize(string) {
25
- return string.replace(_hyphenPattern, function(_, character) {
26
- return character.toUpperCase();
27
- });
28
- }
29
-
30
- module.exports = camelize;
@@ -1,8 +0,0 @@
1
- /* */
2
- "use strict";
3
- var camelize = require("./camelize");
4
- var msPattern = /^-ms-/;
5
- function camelizeStyleName(string) {
6
- return camelize(string.replace(msPattern, 'ms-'));
7
- }
8
- module.exports = camelizeStyleName;
@@ -1,20 +0,0 @@
1
- /* */
2
- (function(process) {
3
- 'use strict';
4
- var ReactElement = require("./ReactElement");
5
- var ReactPropTransferer = require("./ReactPropTransferer");
6
- var keyOf = require("./keyOf");
7
- var warning = require("./warning");
8
- var CHILDREN_PROP = keyOf({children: null});
9
- function cloneWithProps(child, props) {
10
- if ("production" !== process.env.NODE_ENV) {
11
- ("production" !== process.env.NODE_ENV ? warning(!child.ref, 'You are calling cloneWithProps() on a child with a ref. This is ' + 'dangerous because you\'re creating a new child which will not be ' + 'added as a ref to its parent.') : null);
12
- }
13
- var newProps = ReactPropTransferer.mergeProps(props, child.props);
14
- if (!newProps.hasOwnProperty(CHILDREN_PROP) && child.props.hasOwnProperty(CHILDREN_PROP)) {
15
- newProps.children = child.props.children;
16
- }
17
- return ReactElement.createElement(child.type, newProps);
18
- }
19
- module.exports = cloneWithProps;
20
- })(require("process"));
@@ -1,20 +0,0 @@
1
- /* */
2
- var isTextNode = require("./isTextNode");
3
- function containsNode(outerNode, innerNode) {
4
- if (!outerNode || !innerNode) {
5
- return false;
6
- } else if (outerNode === innerNode) {
7
- return true;
8
- } else if (isTextNode(outerNode)) {
9
- return false;
10
- } else if (isTextNode(innerNode)) {
11
- return containsNode(outerNode, innerNode.parentNode);
12
- } else if (outerNode.contains) {
13
- return outerNode.contains(innerNode);
14
- } else if (outerNode.compareDocumentPosition) {
15
- return !!(outerNode.compareDocumentPosition(innerNode) & 16);
16
- } else {
17
- return false;
18
- }
19
- }
20
- module.exports = containsNode;
@@ -1,15 +0,0 @@
1
- /* */
2
- var toArray = require("./toArray");
3
- function hasArrayNature(obj) {
4
- return (!!obj && (typeof obj == 'object' || typeof obj == 'function') && ('length' in obj) && !('setInterval' in obj) && (typeof obj.nodeType != 'number') && (((Array.isArray(obj) || ('callee' in obj) || 'item' in obj))));
5
- }
6
- function createArrayFromMixed(obj) {
7
- if (!hasArrayNature(obj)) {
8
- return [obj];
9
- } else if (Array.isArray(obj)) {
10
- return obj.slice();
11
- } else {
12
- return toArray(obj);
13
- }
14
- }
15
- module.exports = createArrayFromMixed;
@@ -1,22 +0,0 @@
1
- /* */
2
- (function(process) {
3
- 'use strict';
4
- var ReactClass = require("./ReactClass");
5
- var ReactElement = require("./ReactElement");
6
- var invariant = require("./invariant");
7
- function createFullPageComponent(tag) {
8
- var elementFactory = ReactElement.createFactory(tag);
9
- var FullPageComponent = ReactClass.createClass({
10
- tagName: tag.toUpperCase(),
11
- displayName: 'ReactFullPageComponent' + tag,
12
- componentWillUnmount: function() {
13
- ("production" !== process.env.NODE_ENV ? invariant(false, '%s tried to unmount. Because of cross-browser quirks it is ' + 'impossible to unmount some top-level components (eg <html>, <head>, ' + 'and <body>) reliably and efficiently. To fix this, have a single ' + 'top-level component that never unmounts render these elements.', this.constructor.displayName) : invariant(false));
14
- },
15
- render: function() {
16
- return elementFactory(this.props);
17
- }
18
- });
19
- return FullPageComponent;
20
- }
21
- module.exports = createFullPageComponent;
22
- })(require("process"));
@@ -1,39 +0,0 @@
1
- /* */
2
- (function(process) {
3
- var ExecutionEnvironment = require("./ExecutionEnvironment");
4
- var createArrayFromMixed = require("./createArrayFromMixed");
5
- var getMarkupWrap = require("./getMarkupWrap");
6
- var invariant = require("./invariant");
7
- var dummyNode = ExecutionEnvironment.canUseDOM ? document.createElement('div') : null;
8
- var nodeNamePattern = /^\s*<(\w+)/;
9
- function getNodeName(markup) {
10
- var nodeNameMatch = markup.match(nodeNamePattern);
11
- return nodeNameMatch && nodeNameMatch[1].toLowerCase();
12
- }
13
- function createNodesFromMarkup(markup, handleScript) {
14
- var node = dummyNode;
15
- ("production" !== process.env.NODE_ENV ? invariant(!!dummyNode, 'createNodesFromMarkup dummy not initialized') : invariant(!!dummyNode));
16
- var nodeName = getNodeName(markup);
17
- var wrap = nodeName && getMarkupWrap(nodeName);
18
- if (wrap) {
19
- node.innerHTML = wrap[1] + markup + wrap[2];
20
- var wrapDepth = wrap[0];
21
- while (wrapDepth--) {
22
- node = node.lastChild;
23
- }
24
- } else {
25
- node.innerHTML = markup;
26
- }
27
- var scripts = node.getElementsByTagName('script');
28
- if (scripts.length) {
29
- ("production" !== process.env.NODE_ENV ? invariant(handleScript, 'createNodesFromMarkup(...): Unexpected <script> element rendered.') : invariant(handleScript));
30
- createArrayFromMixed(scripts).forEach(handleScript);
31
- }
32
- var nodes = createArrayFromMixed(node.childNodes);
33
- while (node.lastChild) {
34
- node.removeChild(node.lastChild);
35
- }
36
- return nodes;
37
- }
38
- module.exports = createNodesFromMarkup;
39
- })(require("process"));
@@ -1,20 +0,0 @@
1
- /* */
2
- (function(process) {
3
- 'use strict';
4
- var warning = require("./warning");
5
- var warned = false;
6
- function cx(classNames) {
7
- if ("production" !== process.env.NODE_ENV) {
8
- ("production" !== process.env.NODE_ENV ? warning(warned, 'React.addons.classSet will be deprecated in a future version. See ' + 'http://fb.me/react-addons-classset') : null);
9
- warned = true;
10
- }
11
- if (typeof classNames == 'object') {
12
- return Object.keys(classNames).filter(function(className) {
13
- return classNames[className];
14
- }).join(' ');
15
- } else {
16
- return Array.prototype.join.call(arguments, ' ');
17
- }
18
- }
19
- module.exports = cx;
20
- })(require("process"));
@@ -1,19 +0,0 @@
1
- /* */
2
- 'use strict';
3
- var CSSProperty = require("./CSSProperty");
4
- var isUnitlessNumber = CSSProperty.isUnitlessNumber;
5
- function dangerousStyleValue(name, value) {
6
- var isEmpty = value == null || typeof value === 'boolean' || value === '';
7
- if (isEmpty) {
8
- return '';
9
- }
10
- var isNonNumeric = isNaN(value);
11
- if (isNonNumeric || value === 0 || isUnitlessNumber.hasOwnProperty(name) && isUnitlessNumber[name]) {
12
- return '' + value;
13
- }
14
- if (typeof value === 'string') {
15
- value = value.trim();
16
- }
17
- return value + 'px';
18
- }
19
- module.exports = dangerousStyleValue;
@@ -1,32 +0,0 @@
1
- /**
2
- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule emptyFunction
10
- */
11
-
12
- function makeEmptyFunction(arg) {
13
- return function() {
14
- return arg;
15
- };
16
- }
17
-
18
- /**
19
- * This function accepts and discards inputs; it has no side effects. This is
20
- * primarily useful idiomatically for overridable function endpoints which
21
- * always need to be callable, since JS lacks a null-call idiom ala Cocoa.
22
- */
23
- function emptyFunction() {}
24
-
25
- emptyFunction.thatReturns = makeEmptyFunction;
26
- emptyFunction.thatReturnsFalse = makeEmptyFunction(false);
27
- emptyFunction.thatReturnsTrue = makeEmptyFunction(true);
28
- emptyFunction.thatReturnsNull = makeEmptyFunction(null);
29
- emptyFunction.thatReturnsThis = function() { return this; };
30
- emptyFunction.thatReturnsArgument = function(arg) { return arg; };
31
-
32
- module.exports = emptyFunction;
@@ -1,9 +0,0 @@
1
- /* */
2
- (function(process) {
3
- "use strict";
4
- var emptyObject = {};
5
- if ("production" !== process.env.NODE_ENV) {
6
- Object.freeze(emptyObject);
7
- }
8
- module.exports = emptyObject;
9
- })(require("process"));
@@ -1,38 +0,0 @@
1
- /**
2
- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule escapeTextContentForBrowser
10
- */
11
-
12
- 'use strict';
13
-
14
- var ESCAPE_LOOKUP = {
15
- '&': '&amp;',
16
- '>': '&gt;',
17
- '<': '&lt;',
18
- '"': '&quot;',
19
- '\'': '&#x27;'
20
- };
21
-
22
- var ESCAPE_REGEX = /[&><"']/g;
23
-
24
- function escaper(match) {
25
- return ESCAPE_LOOKUP[match];
26
- }
27
-
28
- /**
29
- * Escapes text to prevent scripting attacks.
30
- *
31
- * @param {*} text Text value to escape.
32
- * @return {string} An escaped string.
33
- */
34
- function escapeTextContentForBrowser(text) {
35
- return ('' + text).replace(ESCAPE_REGEX, escaper);
36
- }
37
-
38
- module.exports = escapeTextContentForBrowser;
@@ -1,31 +0,0 @@
1
- /* */
2
- (function(process) {
3
- 'use strict';
4
- var ReactCurrentOwner = require("./ReactCurrentOwner");
5
- var ReactInstanceMap = require("./ReactInstanceMap");
6
- var ReactMount = require("./ReactMount");
7
- var invariant = require("./invariant");
8
- var isNode = require("./isNode");
9
- var warning = require("./warning");
10
- function findDOMNode(componentOrElement) {
11
- if ("production" !== process.env.NODE_ENV) {
12
- var owner = ReactCurrentOwner.current;
13
- if (owner !== null) {
14
- ("production" !== process.env.NODE_ENV ? warning(owner._warnedAboutRefsInRender, '%s is accessing getDOMNode or findDOMNode inside its render(). ' + 'render() should be a pure function of props and state. It should ' + 'never access something that requires stale data from the previous ' + 'render, such as refs. Move this logic to componentDidMount and ' + 'componentDidUpdate instead.', owner.getName() || 'A component') : null);
15
- owner._warnedAboutRefsInRender = true;
16
- }
17
- }
18
- if (componentOrElement == null) {
19
- return null;
20
- }
21
- if (isNode(componentOrElement)) {
22
- return componentOrElement;
23
- }
24
- if (ReactInstanceMap.has(componentOrElement)) {
25
- return ReactMount.getNodeFromInstance(componentOrElement);
26
- }
27
- ("production" !== process.env.NODE_ENV ? invariant(componentOrElement.render == null || typeof componentOrElement.render !== 'function', 'Component (with keys: %s) contains `render` method ' + 'but is not mounted in the DOM', Object.keys(componentOrElement)) : invariant(componentOrElement.render == null || typeof componentOrElement.render !== 'function'));
28
- ("production" !== process.env.NODE_ENV ? invariant(false, 'Element appears to be neither ReactComponent nor DOMNode (keys: %s)', Object.keys(componentOrElement)) : invariant(false));
29
- }
30
- module.exports = findDOMNode;
31
- })(require("process"));
@@ -1,25 +0,0 @@
1
- /* */
2
- (function(process) {
3
- 'use strict';
4
- var traverseAllChildren = require("./traverseAllChildren");
5
- var warning = require("./warning");
6
- function flattenSingleChildIntoContext(traverseContext, child, name) {
7
- var result = traverseContext;
8
- var keyUnique = !result.hasOwnProperty(name);
9
- if ("production" !== process.env.NODE_ENV) {
10
- ("production" !== process.env.NODE_ENV ? warning(keyUnique, 'flattenChildren(...): Encountered two children with the same key, ' + '`%s`. Child keys must be unique; when two children share a key, only ' + 'the first child will be used.', name) : null);
11
- }
12
- if (keyUnique && child != null) {
13
- result[name] = child;
14
- }
15
- }
16
- function flattenChildren(children) {
17
- if (children == null) {
18
- return children;
19
- }
20
- var result = {};
21
- traverseAllChildren(children, flattenSingleChildIntoContext, result);
22
- return result;
23
- }
24
- module.exports = flattenChildren;
25
- })(require("process"));
@@ -1,27 +0,0 @@
1
- /**
2
- * Copyright 2014-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule focusNode
10
- */
11
-
12
- "use strict";
13
-
14
- /**
15
- * @param {DOMElement} node input/textarea to focus
16
- */
17
- function focusNode(node) {
18
- // IE8 can throw "Can't move focus to the control because it is invisible,
19
- // not enabled, or of a type that does not accept the focus." for all kinds of
20
- // reasons that are too expensive and fragile to test.
21
- try {
22
- node.focus();
23
- } catch(e) {
24
- }
25
- }
26
-
27
- module.exports = focusNode;
@@ -1,29 +0,0 @@
1
- /**
2
- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
9
- * @providesModule forEachAccumulated
10
- */
11
-
12
- 'use strict';
13
-
14
- /**
15
- * @param {array} an "accumulation" of items which is either an Array or
16
- * a single item. Useful when paired with the `accumulate` module. This is a
17
- * simple utility that allows us to reason about a collection of items, but
18
- * handling the case when there is exactly one item (and we do not need to
19
- * allocate an array).
20
- */
21
- var forEachAccumulated = function(arr, cb, scope) {
22
- if (Array.isArray(arr)) {
23
- arr.forEach(cb, scope);
24
- } else if (arr) {
25
- cb.call(scope, arr);
26
- }
27
- };
28
-
29
- module.exports = forEachAccumulated;
@@ -1,27 +0,0 @@
1
- /**
2
- * Copyright 2013-2015, Facebook, Inc.
3
- * All rights reserved.
4
- *
5
- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
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- *
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- * @providesModule getActiveElement
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- * @typechecks
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- */
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-
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- /**
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- * Same as document.activeElement but wraps in a try-catch block. In IE it is
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- * not safe to call document.activeElement if there is nothing focused.
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- *
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- * The activeElement will be null only if the document body is not yet defined.
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- */
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- function getActiveElement() /*?DOMElement*/ {
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- try {
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- return document.activeElement || document.body;
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- } catch (e) {
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- return document.body;
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- }
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- }
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-
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- module.exports = getActiveElement;
@@ -1,50 +0,0 @@
1
- /**
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- * Copyright 2013-2015, Facebook, Inc.
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- * All rights reserved.
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- *
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- * This source code is licensed under the BSD-style license found in the
6
- * LICENSE file in the root directory of this source tree. An additional grant
7
- * of patent rights can be found in the PATENTS file in the same directory.
8
- *
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- * @providesModule getEventCharCode
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- * @typechecks static-only
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- */
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-
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- 'use strict';
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-
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- /**
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- * `charCode` represents the actual "character code" and is safe to use with
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- * `String.fromCharCode`. As such, only keys that correspond to printable
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- * characters produce a valid `charCode`, the only exception to this is Enter.
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- * The Tab-key is considered non-printable and does not have a `charCode`,
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- * presumably because it does not produce a tab-character in browsers.
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- *
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- * @param {object} nativeEvent Native browser event.
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- * @return {string} Normalized `charCode` property.
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- */
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- function getEventCharCode(nativeEvent) {
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- var charCode;
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- var keyCode = nativeEvent.keyCode;
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-
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- if ('charCode' in nativeEvent) {
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- charCode = nativeEvent.charCode;
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-
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- // FF does not set `charCode` for the Enter-key, check against `keyCode`.
33
- if (charCode === 0 && keyCode === 13) {
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- charCode = 13;
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- }
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- } else {
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- // IE8 does not implement `charCode`, but `keyCode` has the correct value.
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- charCode = keyCode;
39
- }
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-
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- // Some non-printable keys are reported in `charCode`/`keyCode`, discard them.
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- // Must not discard the (non-)printable Enter-key.
43
- if (charCode >= 32 || charCode === 13) {
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- return charCode;
45
- }
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-
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- return 0;
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- }
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-
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- module.exports = getEventCharCode;
@@ -1,72 +0,0 @@
1
- /* */
2
- 'use strict';
3
- var getEventCharCode = require("./getEventCharCode");
4
- var normalizeKey = {
5
- 'Esc': 'Escape',
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- 'Spacebar': ' ',
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- 'Left': 'ArrowLeft',
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- 'Up': 'ArrowUp',
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- 'Right': 'ArrowRight',
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- 'Down': 'ArrowDown',
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- 'Del': 'Delete',
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- 'Win': 'OS',
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- 'Menu': 'ContextMenu',
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- 'Apps': 'ContextMenu',
15
- 'Scroll': 'ScrollLock',
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- 'MozPrintableKey': 'Unidentified'
17
- };
18
- var translateToKey = {
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- 8: 'Backspace',
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- 9: 'Tab',
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- 12: 'Clear',
22
- 13: 'Enter',
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- 16: 'Shift',
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- 17: 'Control',
25
- 18: 'Alt',
26
- 19: 'Pause',
27
- 20: 'CapsLock',
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- 27: 'Escape',
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- 32: ' ',
30
- 33: 'PageUp',
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- 34: 'PageDown',
32
- 35: 'End',
33
- 36: 'Home',
34
- 37: 'ArrowLeft',
35
- 38: 'ArrowUp',
36
- 39: 'ArrowRight',
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- 40: 'ArrowDown',
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- 45: 'Insert',
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- 46: 'Delete',
40
- 112: 'F1',
41
- 113: 'F2',
42
- 114: 'F3',
43
- 115: 'F4',
44
- 116: 'F5',
45
- 117: 'F6',
46
- 118: 'F7',
47
- 119: 'F8',
48
- 120: 'F9',
49
- 121: 'F10',
50
- 122: 'F11',
51
- 123: 'F12',
52
- 144: 'NumLock',
53
- 145: 'ScrollLock',
54
- 224: 'Meta'
55
- };
56
- function getEventKey(nativeEvent) {
57
- if (nativeEvent.key) {
58
- var key = normalizeKey[nativeEvent.key] || nativeEvent.key;
59
- if (key !== 'Unidentified') {
60
- return key;
61
- }
62
- }
63
- if (nativeEvent.type === 'keypress') {
64
- var charCode = getEventCharCode(nativeEvent);
65
- return charCode === 13 ? 'Enter' : String.fromCharCode(charCode);
66
- }
67
- if (nativeEvent.type === 'keydown' || nativeEvent.type === 'keyup') {
68
- return translateToKey[nativeEvent.keyCode] || 'Unidentified';
69
- }
70
- return '';
71
- }
72
- module.exports = getEventKey;