sequenceserver 2.0.0.rc8 → 2.0.0
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- checksums.yaml +4 -4
- data/bin/sequenceserver +22 -30
- data/lib/sequenceserver/api_errors.rb +5 -1
- data/lib/sequenceserver/blast/constants.rb +1 -1
- data/lib/sequenceserver/blast/hit.rb +5 -16
- data/lib/sequenceserver/blast/job.rb +9 -18
- data/lib/sequenceserver/blast/report.rb +5 -3
- data/lib/sequenceserver/config.rb +4 -1
- data/lib/sequenceserver/database.rb +69 -9
- data/lib/sequenceserver/job.rb +1 -1
- data/lib/sequenceserver/makeblastdb.rb +40 -45
- data/lib/sequenceserver/routes.rb +4 -0
- data/lib/sequenceserver/version.rb +1 -1
- data/lib/sequenceserver.rb +15 -11
- data/public/config.js +143 -142
- data/public/css/fonts.css +23 -22
- data/public/css/grapher.css +598 -594
- data/public/css/sequenceserver.css +86 -24
- data/public/css/sequenceserver.min.css +2 -2
- data/public/js/alignment_exporter.js +14 -14
- data/public/js/databases_tree.js +215 -0
- data/public/js/download_fasta.js +1 -1
- data/public/js/hit.js +6 -2
- data/public/js/hits_overview.js +1 -1
- data/public/js/length_distribution.js +5 -5
- data/public/js/query.js +4 -7
- data/public/js/report.js +12 -24
- data/public/js/search.js +21 -2
- data/public/js/sidebar.js +4 -4
- data/public/js/svgExporter.js +12 -12
- data/public/js/visualisation_helpers.js +4 -5
- data/public/sequenceserver-report.min.js +11 -11
- data/public/sequenceserver-search.min.js +15 -11
- data/public/vendor/github/vakata/jstree@3.3.8/LICENSE-MIT +22 -0
- data/public/vendor/github/vakata/jstree@3.3.8/README.md +663 -0
- data/public/vendor/github/vakata/jstree@3.3.8/bower.json +33 -0
- data/public/vendor/github/vakata/jstree@3.3.8/component.json +28 -0
- data/public/vendor/github/vakata/jstree@3.3.8/composer.json +46 -0
- data/public/vendor/github/vakata/jstree@3.3.8/demo/README.md +2 -0
- data/public/vendor/github/vakata/jstree@3.3.8/demo/basic/index.html +146 -0
- data/public/vendor/github/vakata/jstree@3.3.8/demo/basic/root.json +1 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/jstree.js +8612 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/jstree.min.js +6 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/32px.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/40px.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/style.css +1102 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/style.min.css +1 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/throbber.gif +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/32px.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/40px.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/style.css +1146 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/style.min.css +1 -0
- data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/throbber.gif +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/gruntfile.js +242 -0
- data/public/vendor/github/vakata/jstree@3.3.8/jstree.jquery.json +28 -0
- data/public/vendor/github/vakata/jstree@3.3.8/package.json +58 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/intro.js +14 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.changed.js +69 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.checkbox.js +976 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.conditionalselect.js +38 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.contextmenu.js +661 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.dnd.js +669 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.js +4931 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.massload.js +137 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.search.js +421 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.sort.js +74 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.state.js +138 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.types.js +372 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.unique.js +164 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.wholerow.js +122 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/misc.js +656 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/outro.js +1 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/sample.js +93 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/base.less +93 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/32px.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/40px.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/style.css +1102 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/style.less +22 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/throbber.gif +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/32px.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/40px.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/style.css +1146 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/style.less +50 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/throbber.gif +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/main.less +77 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/mixins.less +104 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/themes/responsive.less +67 -0
- data/public/vendor/github/vakata/jstree@3.3.8/src/vakata-jstree.js +38 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/unit/index.html +16 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/unit/libs/qunit.css +244 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/unit/libs/qunit.js +2212 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/unit/test.js +11 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/visual/desktop/index.html +44 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/visual/mobile/index.html +42 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/desktop/desktop.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/desktop/home.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/mobile/home.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/mobile/mobile.png +0 -0
- data/public/vendor/github/vakata/jstree@3.3.8.js +3 -0
- data/public/vendor/system-csp-production.js +3 -3
- data/public/vendor/system-csp-production.js.map +1 -1
- data/public/vendor/system-csp-production.src.js +146 -140
- data/public/vendor/system-polyfills.js.map +1 -1
- data/public/vendor/system-polyfills.src.js +1 -0
- data/public/vendor/system.js +3 -3
- data/public/vendor/system.js.map +1 -1
- data/public/vendor/system.src.js +4771 -2383
- data/views/_options.erb +21 -0
- data/views/layout.erb +17 -18
- metadata +102 -43
- data/bin/chromedriver +0 -0
- data/bin/geckodriver +0 -0
- data/public/shims/form-core.js +0 -3
- data/public/shims/form-validation.js +0 -3
- data/public/shims/plugins/jquery.ui.position.js +0 -13
- data/public/shims/styles/shim.css +0 -1
@@ -0,0 +1,656 @@
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/* global jQuery */
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// disable all events
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(function ($, undefined) {
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"use strict";
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$.jstree.plugins.trigger = function (options, parent) {
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this.init = function (el, options) {
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parent.init.call(this, el, options);
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};
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this.trigger = function (ev, data) {
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parent.trigger.call(this, ev, data);
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this.disable_events = function () { this._data.trigger.disabled = true; };
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this.enable_events = function () { this._data.trigger.disabled = false; };
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};
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})(jQuery);
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// mapping
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option_key : "option_value"
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$.jstree.plugins.mapper = function () {
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this._parse_model_from_json = function (d, p, ps) {
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// d is the node from the server, it will be called recursively for children,
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// so you do not need to process at once
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/* // for example
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*/
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$.jstree.plugins.noselectedstate = function (options, parent) {
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//img.src = "http://www.dpcd.vic.gov.au/__data/assets/image/0004/30667/help.gif";
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this.get_number = function (obj) {
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tmp = obj.childNodes[i];
|
207
|
+
break;
|
208
|
+
}
|
209
|
+
}
|
210
|
+
if(tmp) {
|
211
|
+
elm = span.cloneNode(true);
|
212
|
+
elm.innerHTML = org + '. ';
|
213
|
+
tmp.insertBefore(elm, tmp.childNodes[tmp.childNodes.length - 1]);
|
214
|
+
}
|
215
|
+
}
|
216
|
+
return obj;
|
217
|
+
};
|
218
|
+
};
|
219
|
+
})(jQuery);
|
220
|
+
|
221
|
+
// additional icon on node (inside anchor)
|
222
|
+
(function ($, undefined) {
|
223
|
+
"use strict";
|
224
|
+
var _s = document.createElement('SPAN');
|
225
|
+
_s.className = 'fa-stack jstree-stackedicon';
|
226
|
+
var _i = document.createElement('I');
|
227
|
+
_i.className = 'jstree-icon';
|
228
|
+
_i.setAttribute('role', 'presentation');
|
229
|
+
|
230
|
+
$.jstree.plugins.stackedicon = function (options, parent) {
|
231
|
+
this.teardown = function () {
|
232
|
+
this.element.find(".jstree-stackedicon").remove();
|
233
|
+
parent.teardown.call(this);
|
234
|
+
};
|
235
|
+
this.redraw_node = function(obj, deep, is_callback, force_render) {
|
236
|
+
obj = parent.redraw_node.apply(this, arguments);
|
237
|
+
if(obj) {
|
238
|
+
var i, j, tmp = null, icon = null, temp = null;
|
239
|
+
for(i = 0, j = obj.childNodes.length; i < j; i++) {
|
240
|
+
if(obj.childNodes[i] && obj.childNodes[i].className && obj.childNodes[i].className.indexOf("jstree-anchor") !== -1) {
|
241
|
+
tmp = obj.childNodes[i];
|
242
|
+
break;
|
243
|
+
}
|
244
|
+
}
|
245
|
+
if(tmp) {
|
246
|
+
if(this._model.data[obj.id].state.icons && this._model.data[obj.id].state.icons.length) {
|
247
|
+
icon = _s.cloneNode(false);
|
248
|
+
for(i = 0, j = this._model.data[obj.id].state.icons.length; i < j; i++) {
|
249
|
+
temp = _i.cloneNode(false);
|
250
|
+
temp.className += ' ' + this._model.data[obj.id].state.icons[i];
|
251
|
+
icon.appendChild(temp);
|
252
|
+
}
|
253
|
+
tmp.insertBefore(icon, tmp.childNodes[0]);
|
254
|
+
}
|
255
|
+
}
|
256
|
+
}
|
257
|
+
return obj;
|
258
|
+
};
|
259
|
+
};
|
260
|
+
})(jQuery);
|
261
|
+
|
262
|
+
// selecting a node opens it
|
263
|
+
(function ($, undefined) {
|
264
|
+
"use strict";
|
265
|
+
$.jstree.plugins.selectopens = function (options, parent) {
|
266
|
+
this.bind = function () {
|
267
|
+
parent.bind.call(this);
|
268
|
+
this.element.on('select_node.jstree', function (e, data) { data.instance.open_node(data.node); });
|
269
|
+
};
|
270
|
+
};
|
271
|
+
})(jQuery);
|
272
|
+
|
273
|
+
// object as data
|
274
|
+
(function ($, undefined) {
|
275
|
+
"use strict";
|
276
|
+
$.jstree.defaults.datamodel = {};
|
277
|
+
$.jstree.plugins.datamodel = function (options, parent) {
|
278
|
+
this.init = function (el, options) {
|
279
|
+
this._data.datamodel = {};
|
280
|
+
parent.init.call(this, el, options);
|
281
|
+
};
|
282
|
+
this._datamodel = function (id, nodes, callback) {
|
283
|
+
var i = 0, j = nodes.length, tmp = [], obj = null;
|
284
|
+
for(; i < j; i++) {
|
285
|
+
this._data.datamodel[nodes[i].getID()] = nodes[i];
|
286
|
+
obj = {
|
287
|
+
id : nodes[i].getID(),
|
288
|
+
text : nodes[i].getText(),
|
289
|
+
children : nodes[i].hasChildren()
|
290
|
+
};
|
291
|
+
if(nodes[i].getExtra) {
|
292
|
+
obj = nodes[i].getExtra(obj); // icon, type
|
293
|
+
}
|
294
|
+
tmp.push(obj);
|
295
|
+
}
|
296
|
+
return this._append_json_data(id, tmp, $.proxy(function (status) {
|
297
|
+
callback.call(this, status);
|
298
|
+
}, this));
|
299
|
+
};
|
300
|
+
this._load_node = function (obj, callback) {
|
301
|
+
var id = obj.id;
|
302
|
+
var nd = obj.id === "#" ? this.settings.core.data : this._data.datamodel[obj.id].getChildren($.proxy(function (nodes) {
|
303
|
+
this._datamodel(id, nodes, callback);
|
304
|
+
}, this));
|
305
|
+
if($.isArray(nd)) {
|
306
|
+
this._datamodel(id, nd, callback);
|
307
|
+
}
|
308
|
+
};
|
309
|
+
};
|
310
|
+
})(jQuery);
|
311
|
+
/*
|
312
|
+
demo of the above
|
313
|
+
function treeNode(val) {
|
314
|
+
var id = ++treeNode.counter;
|
315
|
+
this.getID = function () {
|
316
|
+
return id;
|
317
|
+
};
|
318
|
+
this.getText = function () {
|
319
|
+
return val.toString();
|
320
|
+
};
|
321
|
+
this.getExtra = function (obj) {
|
322
|
+
obj.icon = false;
|
323
|
+
return obj;
|
324
|
+
};
|
325
|
+
this.hasChildren = function () {
|
326
|
+
return true;
|
327
|
+
};
|
328
|
+
this.getChildren = function () {
|
329
|
+
return [
|
330
|
+
new treeNode(Math.pow(val, 2)),
|
331
|
+
new treeNode(Math.sqrt(val)),
|
332
|
+
];
|
333
|
+
};
|
334
|
+
}
|
335
|
+
treeNode.counter = 0;
|
336
|
+
|
337
|
+
$('#jstree').jstree({
|
338
|
+
'core': {
|
339
|
+
'data': [
|
340
|
+
new treeNode(2),
|
341
|
+
new treeNode(3),
|
342
|
+
new treeNode(4),
|
343
|
+
new treeNode(5)
|
344
|
+
]
|
345
|
+
},
|
346
|
+
plugins : ['datamodel']
|
347
|
+
});
|
348
|
+
*/
|
349
|
+
|
350
|
+
// untested sample plugin to keep all nodes in the DOM
|
351
|
+
(function ($, undefined) {
|
352
|
+
"use strict";
|
353
|
+
$.jstree.plugins.dom = function (options, parent) {
|
354
|
+
this.redraw_node = function (node, deep, is_callback, force_render) {
|
355
|
+
return parent.redraw_node.call(this, node, deep, is_callback, true);
|
356
|
+
};
|
357
|
+
this.close_node = function (obj, animation) {
|
358
|
+
var t1, t2, t, d;
|
359
|
+
if($.isArray(obj)) {
|
360
|
+
obj = obj.slice();
|
361
|
+
for(t1 = 0, t2 = obj.length; t1 < t2; t1++) {
|
362
|
+
this.close_node(obj[t1], animation);
|
363
|
+
}
|
364
|
+
return true;
|
365
|
+
}
|
366
|
+
obj = this.get_node(obj);
|
367
|
+
if(!obj || obj.id === $.jstree.root) {
|
368
|
+
return false;
|
369
|
+
}
|
370
|
+
if(this.is_closed(obj)) {
|
371
|
+
return false;
|
372
|
+
}
|
373
|
+
animation = animation === undefined ? this.settings.core.animation : animation;
|
374
|
+
t = this;
|
375
|
+
d = this.get_node(obj, true);
|
376
|
+
if(d.length) {
|
377
|
+
if(!animation) {
|
378
|
+
d[0].className = d[0].className.replace('jstree-open', 'jstree-closed');
|
379
|
+
d.attr("aria-expanded", false);
|
380
|
+
}
|
381
|
+
else {
|
382
|
+
d
|
383
|
+
.children(".jstree-children").attr("style","display:block !important").end()
|
384
|
+
.removeClass("jstree-open").addClass("jstree-closed").attr("aria-expanded", false)
|
385
|
+
.children(".jstree-children").stop(true, true).slideUp(animation, function () {
|
386
|
+
this.style.display = "";
|
387
|
+
t.trigger("after_close", { "node" : obj });
|
388
|
+
});
|
389
|
+
}
|
390
|
+
}
|
391
|
+
obj.state.opened = false;
|
392
|
+
this.trigger('close_node',{ "node" : obj });
|
393
|
+
if(!animation || !d.length) {
|
394
|
+
this.trigger("after_close", { "node" : obj });
|
395
|
+
}
|
396
|
+
};
|
397
|
+
};
|
398
|
+
})(jQuery);
|
399
|
+
|
400
|
+
// customize plugin by @Lusito
|
401
|
+
// https://github.com/Lusito/jstree/blob/node-customize/src/jstree-node-customize.js
|
402
|
+
/**
|
403
|
+
* ### Node Customize plugin
|
404
|
+
*
|
405
|
+
* Allows to customize nodes when they are drawn.
|
406
|
+
*/
|
407
|
+
(function (factory) {
|
408
|
+
"use strict";
|
409
|
+
if (typeof define === 'function' && define.amd) {
|
410
|
+
define('jstree.node_customize', ['jquery','jstree'], factory);
|
411
|
+
}
|
412
|
+
else if(typeof exports === 'object') {
|
413
|
+
factory(require('jquery'), require('jstree'));
|
414
|
+
}
|
415
|
+
else {
|
416
|
+
factory(jQuery, jQuery.jstree);
|
417
|
+
}
|
418
|
+
}(function ($, jstree, undefined) {
|
419
|
+
"use strict";
|
420
|
+
|
421
|
+
if($.jstree.plugins.node_customize) { return; }
|
422
|
+
|
423
|
+
/**
|
424
|
+
* the settings object.
|
425
|
+
* key is the attribute name to select the customizer function from switch.
|
426
|
+
* switch is a key => function(el, node) map.
|
427
|
+
* default: function(el, node) will be called if the type could not be mapped
|
428
|
+
* @name $.jstree.defaults.node_customize
|
429
|
+
* @plugin node_customize
|
430
|
+
*/
|
431
|
+
$.jstree.defaults.node_customize = {
|
432
|
+
"key": "type",
|
433
|
+
"switch": {},
|
434
|
+
"default": null
|
435
|
+
};
|
436
|
+
|
437
|
+
$.jstree.plugins.node_customize = function (options, parent) {
|
438
|
+
this.redraw_node = function (obj, deep, callback, force_draw) {
|
439
|
+
var el = parent.redraw_node.apply(this, arguments);
|
440
|
+
if (el) {
|
441
|
+
var node = this.get_node(obj);
|
442
|
+
var cfg = this.settings.node_customize;
|
443
|
+
var key = cfg.key;
|
444
|
+
var type = (node && node.original && node.original[key]);
|
445
|
+
var customizer = (type && cfg.switch[type]) || cfg.default;
|
446
|
+
if(customizer)
|
447
|
+
customizer(el, node);
|
448
|
+
}
|
449
|
+
return el;
|
450
|
+
};
|
451
|
+
}
|
452
|
+
}));
|
453
|
+
|
454
|
+
|
455
|
+
// parentsload plugin by @ashl1
|
456
|
+
/**
|
457
|
+
* ### Parentsload plugin
|
458
|
+
*
|
459
|
+
* Change load_node() functionality in jsTree, to possible load not yes downloaded node with all it parent in a single request (only useful with lazy loading).
|
460
|
+
*
|
461
|
+
* version 1.0.0 (Alexey Shildyakov - ashl1future@gmail.com)
|
462
|
+
* 2015: Compatible with jsTree-3.2.1
|
463
|
+
*/
|
464
|
+
/*globals jQuery, define, exports, require, document */
|
465
|
+
(function (factory) {
|
466
|
+
"use strict";
|
467
|
+
if (typeof define === 'function' && define.amd) {
|
468
|
+
define('jstree.parentsload', ['jquery','jstree'], factory);
|
469
|
+
}
|
470
|
+
else if(typeof exports === 'object') {
|
471
|
+
factory(require('jquery'), require('jstree'));
|
472
|
+
}
|
473
|
+
else {
|
474
|
+
factory(jQuery, jQuery.jstree);
|
475
|
+
}
|
476
|
+
}(function ($, jstree, undefined) {
|
477
|
+
"use strict";
|
478
|
+
|
479
|
+
if($.jstree.plugins.parentsload) { return; }
|
480
|
+
|
481
|
+
/**
|
482
|
+
* parentsload configuration
|
483
|
+
*
|
484
|
+
* The configuration syntax is almost the same as for core.data option. You must set parenstload.data the following:
|
485
|
+
*
|
486
|
+
* parentsload: {
|
487
|
+
* data: function(){} // this function overwrites core data.data options
|
488
|
+
* }
|
489
|
+
*
|
490
|
+
* OR
|
491
|
+
*
|
492
|
+
* parentsload: {
|
493
|
+
* data: {
|
494
|
+
* url: function(node){} OR string,
|
495
|
+
* data: function(node){} OR associative array as json{data} jQuery parameter
|
496
|
+
* }
|
497
|
+
* }
|
498
|
+
*
|
499
|
+
* In last case at least on of 'url' or 'data' must be presented.
|
500
|
+
*
|
501
|
+
* At first, the plugin load_node() detects if the node already downloaded. If is - uses the core.data settings, if not - uses parentsload.data settings
|
502
|
+
* to fetch in one query the specified node and all its parent. The data must be in the first mentioned JSON format with set nested children[].
|
503
|
+
* Each node level should consist of all nodes on the level to properly work with the tree in the future. Otherwise, you must manually call load_node
|
504
|
+
* on every parent node to fetch all children nodes on that level.
|
505
|
+
*
|
506
|
+
* @name $.jstree.defaults.parentsload
|
507
|
+
* @plugin parentsload
|
508
|
+
*/
|
509
|
+
$.jstree.defaults.parentsload = null;
|
510
|
+
$.jstree.plugins.parentsload = function (options, parent) {
|
511
|
+
this.init = function (el, options) {
|
512
|
+
parent.init.call(this, el, options);
|
513
|
+
this.patch_data()
|
514
|
+
};
|
515
|
+
this.patch_data = function(){
|
516
|
+
var parentsloadSettings = this.settings.parentsload;
|
517
|
+
var jsTreeDataSettings = this.settings.core.data;
|
518
|
+
var self = this;
|
519
|
+
|
520
|
+
var callError = function(number, message) {
|
521
|
+
self._data.core.last_error = { 'error' : 'configuration', 'plugin' : 'parentsload', 'id' : 'parentsload_' + number, 'reason' : message, 'data' : JSON.stringify({config: parentsloadSettings}) };
|
522
|
+
self.settings.core.error.call(self, self._data.core.last_error);
|
523
|
+
}
|
524
|
+
|
525
|
+
if(!parentsloadSettings) {
|
526
|
+
callError('01', 'The configuration must be presented')
|
527
|
+
return
|
528
|
+
}
|
529
|
+
parentsloadSettings = parentsloadSettings.data;
|
530
|
+
|
531
|
+
var patchSettingsProperty = function (propertyName) {
|
532
|
+
var property = parentsloadSettings[propertyName],
|
533
|
+
coreProperty = jsTreeDataSettings[propertyName];
|
534
|
+
if (property) {
|
535
|
+
jsTreeDataSettings[propertyName] = function(node) {
|
536
|
+
if (this.get_node(node).parentsload_required) {
|
537
|
+
if ($.isFunction(property)) {
|
538
|
+
return property.call(this, node)
|
539
|
+
} else {// (typeof property === 'string')
|
540
|
+
return property
|
541
|
+
}
|
542
|
+
} else {
|
543
|
+
if ($.isFunction(coreProperty)) {
|
544
|
+
return coreProperty.call(this, node)
|
545
|
+
} else { // (typeof coreProperty === 'string')
|
546
|
+
return coreProperty
|
547
|
+
}
|
548
|
+
}
|
549
|
+
}
|
550
|
+
} /* else {
|
551
|
+
use jstree the same data[propertyName] settings
|
552
|
+
}*/
|
553
|
+
}
|
554
|
+
|
555
|
+
if($.isFunction(parentsloadSettings)) {
|
556
|
+
this.settings.data = parentsloadSettings
|
557
|
+
} else if (typeof parentsloadSettings === 'object') {
|
558
|
+
if (! (parentsloadSettings.url || parentsloadSettings.data)) {
|
559
|
+
callError('02', 'The "data.url" or "data.data" must be presented in configuration')
|
560
|
+
return
|
561
|
+
}
|
562
|
+
patchSettingsProperty('url')
|
563
|
+
patchSettingsProperty('data')
|
564
|
+
|
565
|
+
} else {
|
566
|
+
callError('03', 'The appropriate "data.url" or "data.data" must be presented in configuration')
|
567
|
+
}
|
568
|
+
}
|
569
|
+
|
570
|
+
this.load_node = function (obj, callback) {
|
571
|
+
if($.isArray(obj)) {
|
572
|
+
// FIXME: _load_nodes will not load nodes not presented in the tree
|
573
|
+
this._load_nodes(obj.slice(), callback);
|
574
|
+
return true;
|
575
|
+
}
|
576
|
+
var foundObj = this.get_node(obj);
|
577
|
+
if (foundObj) {
|
578
|
+
return parent.load_node.apply(this, arguments)
|
579
|
+
} else {
|
580
|
+
// node hasn't been loaded
|
581
|
+
var id = obj.id? obj.id: obj;
|
582
|
+
this._model.data[id] = {
|
583
|
+
id : id,
|
584
|
+
parent : '#',
|
585
|
+
parents : [],
|
586
|
+
children : [],
|
587
|
+
children_d : [],
|
588
|
+
state : { loaded : false },
|
589
|
+
li_attr : {},
|
590
|
+
a_attr : {},
|
591
|
+
parentsload_required : true,
|
592
|
+
};
|
593
|
+
return parent.load_node.call(this, obj, function(obj, status){
|
594
|
+
obj.parentsload_required = !status
|
595
|
+
callback.call(this, obj, status)
|
596
|
+
})
|
597
|
+
}
|
598
|
+
}
|
599
|
+
};
|
600
|
+
}));
|
601
|
+
|
602
|
+
// conditional deselect
|
603
|
+
(function (factory) {
|
604
|
+
"use strict";
|
605
|
+
if (typeof define === 'function' && define.amd) {
|
606
|
+
define('jstree.conditionaldeselect', ['jquery','jstree'], factory);
|
607
|
+
}
|
608
|
+
else if(typeof exports === 'object') {
|
609
|
+
factory(require('jquery'), require('jstree'));
|
610
|
+
}
|
611
|
+
else {
|
612
|
+
factory(jQuery, jQuery.jstree);
|
613
|
+
}
|
614
|
+
}(function ($, jstree, undefined) {
|
615
|
+
"use strict";
|
616
|
+
|
617
|
+
if($.jstree.plugins.conditionaldeselect) { return; }
|
618
|
+
$.jstree.defaults.conditionaldeselect = function () { return true; };
|
619
|
+
$.jstree.plugins.conditionaldeselect = function (options, parent) {
|
620
|
+
// own function
|
621
|
+
this.deselect_node = function (obj, supress_event, e) {
|
622
|
+
if(this.settings.conditionaldeselect.call(this, this.get_node(obj), e)) {
|
623
|
+
return parent.deselect_node.call(this, obj, supress_event, e);
|
624
|
+
}
|
625
|
+
};
|
626
|
+
};
|
627
|
+
|
628
|
+
}));
|
629
|
+
|
630
|
+
// conditional close
|
631
|
+
(function (factory) {
|
632
|
+
"use strict";
|
633
|
+
if (typeof define === 'function' && define.amd) {
|
634
|
+
define('jstree.conditionalclose', ['jquery','jstree'], factory);
|
635
|
+
}
|
636
|
+
else if(typeof exports === 'object') {
|
637
|
+
factory(require('jquery'), require('jstree'));
|
638
|
+
}
|
639
|
+
else {
|
640
|
+
factory(jQuery, jQuery.jstree);
|
641
|
+
}
|
642
|
+
}(function ($, jstree, undefined) {
|
643
|
+
"use strict";
|
644
|
+
|
645
|
+
if($.jstree.plugins.conditionalclose) { return; }
|
646
|
+
$.jstree.defaults.conditionalclose = function () { return true; };
|
647
|
+
$.jstree.plugins.conditionalclose = function (options, parent) {
|
648
|
+
// own function
|
649
|
+
this.close_node = function (obj, animation) {
|
650
|
+
if(this.settings.conditionalclose.close.call(this, this.get_node(obj), e)) {
|
651
|
+
return parent.deselect_node.call(this, obj, animation);
|
652
|
+
}
|
653
|
+
};
|
654
|
+
};
|
655
|
+
|
656
|
+
}));
|
@@ -0,0 +1 @@
|
|
1
|
+
}));
|