sequenceserver 2.0.0.rc8 → 2.0.0

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Files changed (116) hide show
  1. checksums.yaml +4 -4
  2. data/bin/sequenceserver +22 -30
  3. data/lib/sequenceserver/api_errors.rb +5 -1
  4. data/lib/sequenceserver/blast/constants.rb +1 -1
  5. data/lib/sequenceserver/blast/hit.rb +5 -16
  6. data/lib/sequenceserver/blast/job.rb +9 -18
  7. data/lib/sequenceserver/blast/report.rb +5 -3
  8. data/lib/sequenceserver/config.rb +4 -1
  9. data/lib/sequenceserver/database.rb +69 -9
  10. data/lib/sequenceserver/job.rb +1 -1
  11. data/lib/sequenceserver/makeblastdb.rb +40 -45
  12. data/lib/sequenceserver/routes.rb +4 -0
  13. data/lib/sequenceserver/version.rb +1 -1
  14. data/lib/sequenceserver.rb +15 -11
  15. data/public/config.js +143 -142
  16. data/public/css/fonts.css +23 -22
  17. data/public/css/grapher.css +598 -594
  18. data/public/css/sequenceserver.css +86 -24
  19. data/public/css/sequenceserver.min.css +2 -2
  20. data/public/js/alignment_exporter.js +14 -14
  21. data/public/js/databases_tree.js +215 -0
  22. data/public/js/download_fasta.js +1 -1
  23. data/public/js/hit.js +6 -2
  24. data/public/js/hits_overview.js +1 -1
  25. data/public/js/length_distribution.js +5 -5
  26. data/public/js/query.js +4 -7
  27. data/public/js/report.js +12 -24
  28. data/public/js/search.js +21 -2
  29. data/public/js/sidebar.js +4 -4
  30. data/public/js/svgExporter.js +12 -12
  31. data/public/js/visualisation_helpers.js +4 -5
  32. data/public/sequenceserver-report.min.js +11 -11
  33. data/public/sequenceserver-search.min.js +15 -11
  34. data/public/vendor/github/vakata/jstree@3.3.8/LICENSE-MIT +22 -0
  35. data/public/vendor/github/vakata/jstree@3.3.8/README.md +663 -0
  36. data/public/vendor/github/vakata/jstree@3.3.8/bower.json +33 -0
  37. data/public/vendor/github/vakata/jstree@3.3.8/component.json +28 -0
  38. data/public/vendor/github/vakata/jstree@3.3.8/composer.json +46 -0
  39. data/public/vendor/github/vakata/jstree@3.3.8/demo/README.md +2 -0
  40. data/public/vendor/github/vakata/jstree@3.3.8/demo/basic/index.html +146 -0
  41. data/public/vendor/github/vakata/jstree@3.3.8/demo/basic/root.json +1 -0
  42. data/public/vendor/github/vakata/jstree@3.3.8/dist/jstree.js +8612 -0
  43. data/public/vendor/github/vakata/jstree@3.3.8/dist/jstree.min.js +6 -0
  44. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/32px.png +0 -0
  45. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/40px.png +0 -0
  46. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/style.css +1102 -0
  47. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/style.min.css +1 -0
  48. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default/throbber.gif +0 -0
  49. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/32px.png +0 -0
  50. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/40px.png +0 -0
  51. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/style.css +1146 -0
  52. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/style.min.css +1 -0
  53. data/public/vendor/github/vakata/jstree@3.3.8/dist/themes/default-dark/throbber.gif +0 -0
  54. data/public/vendor/github/vakata/jstree@3.3.8/gruntfile.js +242 -0
  55. data/public/vendor/github/vakata/jstree@3.3.8/jstree.jquery.json +28 -0
  56. data/public/vendor/github/vakata/jstree@3.3.8/package.json +58 -0
  57. data/public/vendor/github/vakata/jstree@3.3.8/src/intro.js +14 -0
  58. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.changed.js +69 -0
  59. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.checkbox.js +976 -0
  60. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.conditionalselect.js +38 -0
  61. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.contextmenu.js +661 -0
  62. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.dnd.js +669 -0
  63. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.js +4931 -0
  64. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.massload.js +137 -0
  65. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.search.js +421 -0
  66. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.sort.js +74 -0
  67. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.state.js +138 -0
  68. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.types.js +372 -0
  69. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.unique.js +164 -0
  70. data/public/vendor/github/vakata/jstree@3.3.8/src/jstree.wholerow.js +122 -0
  71. data/public/vendor/github/vakata/jstree@3.3.8/src/misc.js +656 -0
  72. data/public/vendor/github/vakata/jstree@3.3.8/src/outro.js +1 -0
  73. data/public/vendor/github/vakata/jstree@3.3.8/src/sample.js +93 -0
  74. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/base.less +93 -0
  75. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/32px.png +0 -0
  76. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/40px.png +0 -0
  77. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/style.css +1102 -0
  78. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/style.less +22 -0
  79. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default/throbber.gif +0 -0
  80. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/32px.png +0 -0
  81. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/40px.png +0 -0
  82. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/style.css +1146 -0
  83. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/style.less +50 -0
  84. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/default-dark/throbber.gif +0 -0
  85. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/main.less +77 -0
  86. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/mixins.less +104 -0
  87. data/public/vendor/github/vakata/jstree@3.3.8/src/themes/responsive.less +67 -0
  88. data/public/vendor/github/vakata/jstree@3.3.8/src/vakata-jstree.js +38 -0
  89. data/public/vendor/github/vakata/jstree@3.3.8/test/unit/index.html +16 -0
  90. data/public/vendor/github/vakata/jstree@3.3.8/test/unit/libs/qunit.css +244 -0
  91. data/public/vendor/github/vakata/jstree@3.3.8/test/unit/libs/qunit.js +2212 -0
  92. data/public/vendor/github/vakata/jstree@3.3.8/test/unit/test.js +11 -0
  93. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/desktop/index.html +44 -0
  94. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/mobile/index.html +42 -0
  95. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/desktop/desktop.png +0 -0
  96. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/desktop/home.png +0 -0
  97. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/mobile/home.png +0 -0
  98. data/public/vendor/github/vakata/jstree@3.3.8/test/visual/screenshots/mobile/mobile.png +0 -0
  99. data/public/vendor/github/vakata/jstree@3.3.8.js +3 -0
  100. data/public/vendor/system-csp-production.js +3 -3
  101. data/public/vendor/system-csp-production.js.map +1 -1
  102. data/public/vendor/system-csp-production.src.js +146 -140
  103. data/public/vendor/system-polyfills.js.map +1 -1
  104. data/public/vendor/system-polyfills.src.js +1 -0
  105. data/public/vendor/system.js +3 -3
  106. data/public/vendor/system.js.map +1 -1
  107. data/public/vendor/system.src.js +4771 -2383
  108. data/views/_options.erb +21 -0
  109. data/views/layout.erb +17 -18
  110. metadata +102 -43
  111. data/bin/chromedriver +0 -0
  112. data/bin/geckodriver +0 -0
  113. data/public/shims/form-core.js +0 -3
  114. data/public/shims/form-validation.js +0 -3
  115. data/public/shims/plugins/jquery.ui.position.js +0 -13
  116. data/public/shims/styles/shim.css +0 -1
@@ -0,0 +1,669 @@
1
+ /**
2
+ * ### Drag'n'drop plugin
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+ *
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+ * Enables dragging and dropping of nodes in the tree, resulting in a move or copy operations.
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+ */
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+ /*globals jQuery, define, exports, require, document */
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+ (function (factory) {
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+ "use strict";
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+ if (typeof define === 'function' && define.amd) {
10
+ define('jstree.dnd', ['jquery','jstree'], factory);
11
+ }
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+ else if(typeof exports === 'object') {
13
+ factory(require('jquery'), require('jstree'));
14
+ }
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+ else {
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+ factory(jQuery, jQuery.jstree);
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+ }
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+ }(function ($, jstree, undefined) {
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+ "use strict";
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+
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+ if($.jstree.plugins.dnd) { return; }
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+
23
+ /**
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+ * stores all defaults for the drag'n'drop plugin
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+ * @name $.jstree.defaults.dnd
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+ * @plugin dnd
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+ */
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+ $.jstree.defaults.dnd = {
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+ /**
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+ * a boolean indicating if a copy should be possible while dragging (by pressint the meta key or Ctrl). Defaults to `true`.
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+ * @name $.jstree.defaults.dnd.copy
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+ * @plugin dnd
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+ */
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+ copy : true,
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+ /**
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+ * a number indicating how long a node should remain hovered while dragging to be opened. Defaults to `500`.
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+ * @name $.jstree.defaults.dnd.open_timeout
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+ * @plugin dnd
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+ */
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+ open_timeout : 500,
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+ /**
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+ * a function invoked each time a node is about to be dragged, invoked in the tree's scope and receives the nodes about to be dragged as an argument (array) and the event that started the drag - return `false` to prevent dragging
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+ * @name $.jstree.defaults.dnd.is_draggable
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+ * @plugin dnd
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+ */
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+ is_draggable : true,
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+ /**
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+ * a boolean indicating if checks should constantly be made while the user is dragging the node (as opposed to checking only on drop), default is `true`
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+ * @name $.jstree.defaults.dnd.check_while_dragging
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+ * @plugin dnd
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+ */
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+ check_while_dragging : true,
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+ /**
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+ * a boolean indicating if nodes from this tree should only be copied with dnd (as opposed to moved), default is `false`
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+ * @name $.jstree.defaults.dnd.always_copy
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+ * @plugin dnd
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+ */
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+ always_copy : false,
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+ /**
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+ * when dropping a node "inside", this setting indicates the position the node should go to - it can be an integer or a string: "first" (same as 0) or "last", default is `0`
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+ * @name $.jstree.defaults.dnd.inside_pos
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+ * @plugin dnd
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+ */
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+ inside_pos : 0,
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+ /**
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+ * when starting the drag on a node that is selected this setting controls if all selected nodes are dragged or only the single node, default is `true`, which means all selected nodes are dragged when the drag is started on a selected node
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+ * @name $.jstree.defaults.dnd.drag_selection
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+ * @plugin dnd
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+ */
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+ drag_selection : true,
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+ /**
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+ * controls whether dnd works on touch devices. If left as boolean true dnd will work the same as in desktop browsers, which in some cases may impair scrolling. If set to boolean false dnd will not work on touch devices. There is a special third option - string "selected" which means only selected nodes can be dragged on touch devices.
73
+ * @name $.jstree.defaults.dnd.touch
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+ * @plugin dnd
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+ */
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+ touch : true,
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+ /**
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+ * controls whether items can be dropped anywhere on the node, not just on the anchor, by default only the node anchor is a valid drop target. Works best with the wholerow plugin. If enabled on mobile depending on the interface it might be hard for the user to cancel the drop, since the whole tree container will be a valid drop target.
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+ * @name $.jstree.defaults.dnd.large_drop_target
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+ * @plugin dnd
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+ */
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+ large_drop_target : false,
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+ /**
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+ * controls whether a drag can be initiated from any part of the node and not just the text/icon part, works best with the wholerow plugin. Keep in mind it can cause problems with tree scrolling on mobile depending on the interface - in that case set the touch option to "selected".
85
+ * @name $.jstree.defaults.dnd.large_drag_target
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+ * @plugin dnd
87
+ */
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+ large_drag_target : false,
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+ /**
90
+ * controls whether use HTML5 dnd api instead of classical. That will allow better integration of dnd events with other HTML5 controls.
91
+ * @reference http://caniuse.com/#feat=dragndrop
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+ * @name $.jstree.defaults.dnd.use_html5
93
+ * @plugin dnd
94
+ */
95
+ use_html5: false
96
+ };
97
+ var drg, elm;
98
+ // TODO: now check works by checking for each node individually, how about max_children, unique, etc?
99
+ $.jstree.plugins.dnd = function (options, parent) {
100
+ this.init = function (el, options) {
101
+ parent.init.call(this, el, options);
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+ this.settings.dnd.use_html5 = this.settings.dnd.use_html5 && ('draggable' in document.createElement('span'));
103
+ };
104
+ this.bind = function () {
105
+ parent.bind.call(this);
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+
107
+ this.element
108
+ .on(this.settings.dnd.use_html5 ? 'dragstart.jstree' : 'mousedown.jstree touchstart.jstree', this.settings.dnd.large_drag_target ? '.jstree-node' : '.jstree-anchor', $.proxy(function (e) {
109
+ if(this.settings.dnd.large_drag_target && $(e.target).closest('.jstree-node')[0] !== e.currentTarget) {
110
+ return true;
111
+ }
112
+ if(e.type === "touchstart" && (!this.settings.dnd.touch || (this.settings.dnd.touch === 'selected' && !$(e.currentTarget).closest('.jstree-node').children('.jstree-anchor').hasClass('jstree-clicked')))) {
113
+ return true;
114
+ }
115
+ var obj = this.get_node(e.target),
116
+ mlt = this.is_selected(obj) && this.settings.dnd.drag_selection ? this.get_top_selected().length : 1,
117
+ txt = (mlt > 1 ? mlt + ' ' + this.get_string('nodes') : this.get_text(e.currentTarget));
118
+ if(this.settings.core.force_text) {
119
+ txt = $.vakata.html.escape(txt);
120
+ }
121
+ if(obj && obj.id && obj.id !== $.jstree.root && (e.which === 1 || e.type === "touchstart" || e.type === "dragstart") &&
122
+ (this.settings.dnd.is_draggable === true || ($.isFunction(this.settings.dnd.is_draggable) && this.settings.dnd.is_draggable.call(this, (mlt > 1 ? this.get_top_selected(true) : [obj]), e)))
123
+ ) {
124
+ drg = { 'jstree' : true, 'origin' : this, 'obj' : this.get_node(obj,true), 'nodes' : mlt > 1 ? this.get_top_selected() : [obj.id] };
125
+ elm = e.currentTarget;
126
+ if (this.settings.dnd.use_html5) {
127
+ $.vakata.dnd._trigger('start', e, { 'helper': $(), 'element': elm, 'data': drg });
128
+ } else {
129
+ this.element.trigger('mousedown.jstree');
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+ return $.vakata.dnd.start(e, drg, '<div id="jstree-dnd" class="jstree-' + this.get_theme() + ' jstree-' + this.get_theme() + '-' + this.get_theme_variant() + ' ' + ( this.settings.core.themes.responsive ? ' jstree-dnd-responsive' : '' ) + '"><i class="jstree-icon jstree-er"></i>' + txt + '<ins class="jstree-copy" style="display:none;">+</ins></div>');
131
+ }
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+ }
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+ }, this));
134
+ if (this.settings.dnd.use_html5) {
135
+ this.element
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+ .on('dragover.jstree', function (e) {
137
+ e.preventDefault();
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+ $.vakata.dnd._trigger('move', e, { 'helper': $(), 'element': elm, 'data': drg });
139
+ return false;
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+ })
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+ //.on('dragenter.jstree', this.settings.dnd.large_drop_target ? '.jstree-node' : '.jstree-anchor', $.proxy(function (e) {
142
+ // e.preventDefault();
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+ // $.vakata.dnd._trigger('move', e, { 'helper': $(), 'element': elm, 'data': drg });
144
+ // return false;
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+ // }, this))
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+ .on('drop.jstree', $.proxy(function (e) {
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+ e.preventDefault();
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+ $.vakata.dnd._trigger('stop', e, { 'helper': $(), 'element': elm, 'data': drg });
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+ return false;
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+ }, this));
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+ }
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+ };
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+ this.redraw_node = function(obj, deep, callback, force_render) {
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+ obj = parent.redraw_node.apply(this, arguments);
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+ if (obj && this.settings.dnd.use_html5) {
156
+ if (this.settings.dnd.large_drag_target) {
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+ obj.setAttribute('draggable', true);
158
+ } else {
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+ var i, j, tmp = null;
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+ for(i = 0, j = obj.childNodes.length; i < j; i++) {
161
+ if(obj.childNodes[i] && obj.childNodes[i].className && obj.childNodes[i].className.indexOf("jstree-anchor") !== -1) {
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+ tmp = obj.childNodes[i];
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+ break;
164
+ }
165
+ }
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+ if(tmp) {
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+ tmp.setAttribute('draggable', true);
168
+ }
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+ }
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+ }
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+ return obj;
172
+ };
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+ };
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+
175
+ $(function() {
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+ // bind only once for all instances
177
+ var lastmv = false,
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+ laster = false,
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+ lastev = false,
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+ opento = false,
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+ marker = $('<div id="jstree-marker">&#160;</div>').hide(); //.appendTo('body');
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+
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+ $(document)
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+ .on('dragover.vakata.jstree', function (e) {
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+ if (elm) {
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+ $.vakata.dnd._trigger('move', e, { 'helper': $(), 'element': elm, 'data': drg });
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+ }
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+ })
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+ .on('drop.vakata.jstree', function (e) {
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+ if (elm) {
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+ $.vakata.dnd._trigger('stop', e, { 'helper': $(), 'element': elm, 'data': drg });
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+ elm = null;
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+ drg = null;
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+ }
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+ })
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+ .on('dnd_start.vakata.jstree', function (e, data) {
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+ lastmv = false;
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+ lastev = false;
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+ if(!data || !data.data || !data.data.jstree) { return; }
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+ marker.appendTo(document.body); //.show();
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+ })
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+ .on('dnd_move.vakata.jstree', function (e, data) {
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+ var isDifferentNode = data.event.target !== lastev.target;
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+ if(opento) {
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+ if (!data.event || data.event.type !== 'dragover' || isDifferentNode) {
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+ clearTimeout(opento);
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+ }
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+ }
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+ if(!data || !data.data || !data.data.jstree) { return; }
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+
211
+ // if we are hovering the marker image do nothing (can happen on "inside" drags)
212
+ if(data.event.target.id && data.event.target.id === 'jstree-marker') {
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+ return;
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+ }
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+ lastev = data.event;
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+
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+ var ins = $.jstree.reference(data.event.target),
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+ ref = false,
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+ off = false,
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+ rel = false,
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+ tmp, l, t, h, p, i, o, ok, t1, t2, op, ps, pr, ip, tm, is_copy, pn;
222
+ // if we are over an instance
223
+ if(ins && ins._data && ins._data.dnd) {
224
+ marker.attr('class', 'jstree-' + ins.get_theme() + ( ins.settings.core.themes.responsive ? ' jstree-dnd-responsive' : '' ));
225
+ is_copy = data.data.origin && (data.data.origin.settings.dnd.always_copy || (data.data.origin.settings.dnd.copy && (data.event.metaKey || data.event.ctrlKey)));
226
+ data.helper
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+ .children().attr('class', 'jstree-' + ins.get_theme() + ' jstree-' + ins.get_theme() + '-' + ins.get_theme_variant() + ' ' + ( ins.settings.core.themes.responsive ? ' jstree-dnd-responsive' : '' ))
228
+ .find('.jstree-copy').first()[ is_copy ? 'show' : 'hide' ]();
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+
230
+ // if are hovering the container itself add a new root node
231
+ //console.log(data.event);
232
+ if( (data.event.target === ins.element[0] || data.event.target === ins.get_container_ul()[0]) && ins.get_container_ul().children().length === 0) {
233
+ ok = true;
234
+ for(t1 = 0, t2 = data.data.nodes.length; t1 < t2; t1++) {
235
+ ok = ok && ins.check( (data.data.origin && (data.data.origin.settings.dnd.always_copy || (data.data.origin.settings.dnd.copy && (data.event.metaKey || data.event.ctrlKey)) ) ? "copy_node" : "move_node"), (data.data.origin && data.data.origin !== ins ? data.data.origin.get_node(data.data.nodes[t1]) : data.data.nodes[t1]), $.jstree.root, 'last', { 'dnd' : true, 'ref' : ins.get_node($.jstree.root), 'pos' : 'i', 'origin' : data.data.origin, 'is_multi' : (data.data.origin && data.data.origin !== ins), 'is_foreign' : (!data.data.origin) });
236
+ if(!ok) { break; }
237
+ }
238
+ if(ok) {
239
+ lastmv = { 'ins' : ins, 'par' : $.jstree.root, 'pos' : 'last' };
240
+ marker.hide();
241
+ data.helper.find('.jstree-icon').first().removeClass('jstree-er').addClass('jstree-ok');
242
+ if (data.event.originalEvent && data.event.originalEvent.dataTransfer) {
243
+ data.event.originalEvent.dataTransfer.dropEffect = is_copy ? 'copy' : 'move';
244
+ }
245
+ return;
246
+ }
247
+ }
248
+ else {
249
+ // if we are hovering a tree node
250
+ ref = ins.settings.dnd.large_drop_target ? $(data.event.target).closest('.jstree-node').children('.jstree-anchor') : $(data.event.target).closest('.jstree-anchor');
251
+ if(ref && ref.length && ref.parent().is('.jstree-closed, .jstree-open, .jstree-leaf')) {
252
+ off = ref.offset();
253
+ rel = (data.event.pageY !== undefined ? data.event.pageY : data.event.originalEvent.pageY) - off.top;
254
+ h = ref.outerHeight();
255
+ if(rel < h / 3) {
256
+ o = ['b', 'i', 'a'];
257
+ }
258
+ else if(rel > h - h / 3) {
259
+ o = ['a', 'i', 'b'];
260
+ }
261
+ else {
262
+ o = rel > h / 2 ? ['i', 'a', 'b'] : ['i', 'b', 'a'];
263
+ }
264
+ $.each(o, function (j, v) {
265
+ switch(v) {
266
+ case 'b':
267
+ l = off.left - 6;
268
+ t = off.top;
269
+ p = ins.get_parent(ref);
270
+ i = ref.parent().index();
271
+ break;
272
+ case 'i':
273
+ ip = ins.settings.dnd.inside_pos;
274
+ tm = ins.get_node(ref.parent());
275
+ l = off.left - 2;
276
+ t = off.top + h / 2 + 1;
277
+ p = tm.id;
278
+ i = ip === 'first' ? 0 : (ip === 'last' ? tm.children.length : Math.min(ip, tm.children.length));
279
+ break;
280
+ case 'a':
281
+ l = off.left - 6;
282
+ t = off.top + h;
283
+ p = ins.get_parent(ref);
284
+ i = ref.parent().index() + 1;
285
+ break;
286
+ }
287
+ ok = true;
288
+ for(t1 = 0, t2 = data.data.nodes.length; t1 < t2; t1++) {
289
+ op = data.data.origin && (data.data.origin.settings.dnd.always_copy || (data.data.origin.settings.dnd.copy && (data.event.metaKey || data.event.ctrlKey))) ? "copy_node" : "move_node";
290
+ ps = i;
291
+ if(op === "move_node" && v === 'a' && (data.data.origin && data.data.origin === ins) && p === ins.get_parent(data.data.nodes[t1])) {
292
+ pr = ins.get_node(p);
293
+ if(ps > $.inArray(data.data.nodes[t1], pr.children)) {
294
+ ps -= 1;
295
+ }
296
+ }
297
+ ok = ok && ( (ins && ins.settings && ins.settings.dnd && ins.settings.dnd.check_while_dragging === false) || ins.check(op, (data.data.origin && data.data.origin !== ins ? data.data.origin.get_node(data.data.nodes[t1]) : data.data.nodes[t1]), p, ps, { 'dnd' : true, 'ref' : ins.get_node(ref.parent()), 'pos' : v, 'origin' : data.data.origin, 'is_multi' : (data.data.origin && data.data.origin !== ins), 'is_foreign' : (!data.data.origin) }) );
298
+ if(!ok) {
299
+ if(ins && ins.last_error) { laster = ins.last_error(); }
300
+ break;
301
+ }
302
+ }
303
+ if(v === 'i' && ref.parent().is('.jstree-closed') && ins.settings.dnd.open_timeout) {
304
+ if (!data.event || data.event.type !== 'dragover' || isDifferentNode) {
305
+ if (opento) { clearTimeout(opento); }
306
+ opento = setTimeout((function (x, z) { return function () { x.open_node(z); }; }(ins, ref)), ins.settings.dnd.open_timeout);
307
+ }
308
+ }
309
+ if(ok) {
310
+ pn = ins.get_node(p, true);
311
+ if (!pn.hasClass('.jstree-dnd-parent')) {
312
+ $('.jstree-dnd-parent').removeClass('jstree-dnd-parent');
313
+ pn.addClass('jstree-dnd-parent');
314
+ }
315
+ lastmv = { 'ins' : ins, 'par' : p, 'pos' : v === 'i' && ip === 'last' && i === 0 && !ins.is_loaded(tm) ? 'last' : i };
316
+ marker.css({ 'left' : l + 'px', 'top' : t + 'px' }).show();
317
+ data.helper.find('.jstree-icon').first().removeClass('jstree-er').addClass('jstree-ok');
318
+ if (data.event.originalEvent && data.event.originalEvent.dataTransfer) {
319
+ data.event.originalEvent.dataTransfer.dropEffect = is_copy ? 'copy' : 'move';
320
+ }
321
+ laster = {};
322
+ o = true;
323
+ return false;
324
+ }
325
+ });
326
+ if(o === true) { return; }
327
+ }
328
+ }
329
+ }
330
+ $('.jstree-dnd-parent').removeClass('jstree-dnd-parent');
331
+ lastmv = false;
332
+ data.helper.find('.jstree-icon').removeClass('jstree-ok').addClass('jstree-er');
333
+ if (data.event.originalEvent && data.event.originalEvent.dataTransfer) {
334
+ //data.event.originalEvent.dataTransfer.dropEffect = 'none';
335
+ }
336
+ marker.hide();
337
+ })
338
+ .on('dnd_scroll.vakata.jstree', function (e, data) {
339
+ if(!data || !data.data || !data.data.jstree) { return; }
340
+ marker.hide();
341
+ lastmv = false;
342
+ lastev = false;
343
+ data.helper.find('.jstree-icon').first().removeClass('jstree-ok').addClass('jstree-er');
344
+ })
345
+ .on('dnd_stop.vakata.jstree', function (e, data) {
346
+ $('.jstree-dnd-parent').removeClass('jstree-dnd-parent');
347
+ if(opento) { clearTimeout(opento); }
348
+ if(!data || !data.data || !data.data.jstree) { return; }
349
+ marker.hide().detach();
350
+ var i, j, nodes = [];
351
+ if(lastmv) {
352
+ for(i = 0, j = data.data.nodes.length; i < j; i++) {
353
+ nodes[i] = data.data.origin ? data.data.origin.get_node(data.data.nodes[i]) : data.data.nodes[i];
354
+ }
355
+ lastmv.ins[ data.data.origin && (data.data.origin.settings.dnd.always_copy || (data.data.origin.settings.dnd.copy && (data.event.metaKey || data.event.ctrlKey))) ? 'copy_node' : 'move_node' ](nodes, lastmv.par, lastmv.pos, false, false, false, data.data.origin);
356
+ }
357
+ else {
358
+ i = $(data.event.target).closest('.jstree');
359
+ if(i.length && laster && laster.error && laster.error === 'check') {
360
+ i = i.jstree(true);
361
+ if(i) {
362
+ i.settings.core.error.call(this, laster);
363
+ }
364
+ }
365
+ }
366
+ lastev = false;
367
+ lastmv = false;
368
+ })
369
+ .on('keyup.jstree keydown.jstree', function (e, data) {
370
+ data = $.vakata.dnd._get();
371
+ if(data && data.data && data.data.jstree) {
372
+ if (e.type === "keyup" && e.which === 27) {
373
+ if (opento) { clearTimeout(opento); }
374
+ lastmv = false;
375
+ laster = false;
376
+ lastev = false;
377
+ opento = false;
378
+ marker.hide().detach();
379
+ $.vakata.dnd._clean();
380
+ } else {
381
+ data.helper.find('.jstree-copy').first()[ data.data.origin && (data.data.origin.settings.dnd.always_copy || (data.data.origin.settings.dnd.copy && (e.metaKey || e.ctrlKey))) ? 'show' : 'hide' ]();
382
+ if(lastev) {
383
+ lastev.metaKey = e.metaKey;
384
+ lastev.ctrlKey = e.ctrlKey;
385
+ $.vakata.dnd._trigger('move', lastev);
386
+ }
387
+ }
388
+ }
389
+ });
390
+ });
391
+
392
+ // helpers
393
+ (function ($) {
394
+ $.vakata.html = {
395
+ div : $('<div />'),
396
+ escape : function (str) {
397
+ return $.vakata.html.div.text(str).html();
398
+ },
399
+ strip : function (str) {
400
+ return $.vakata.html.div.empty().append($.parseHTML(str)).text();
401
+ }
402
+ };
403
+ // private variable
404
+ var vakata_dnd = {
405
+ element : false,
406
+ target : false,
407
+ is_down : false,
408
+ is_drag : false,
409
+ helper : false,
410
+ helper_w: 0,
411
+ data : false,
412
+ init_x : 0,
413
+ init_y : 0,
414
+ scroll_l: 0,
415
+ scroll_t: 0,
416
+ scroll_e: false,
417
+ scroll_i: false,
418
+ is_touch: false
419
+ };
420
+ $.vakata.dnd = {
421
+ settings : {
422
+ scroll_speed : 10,
423
+ scroll_proximity : 20,
424
+ helper_left : 5,
425
+ helper_top : 10,
426
+ threshold : 5,
427
+ threshold_touch : 10
428
+ },
429
+ _trigger : function (event_name, e, data) {
430
+ if (data === undefined) {
431
+ data = $.vakata.dnd._get();
432
+ }
433
+ data.event = e;
434
+ $(document).triggerHandler("dnd_" + event_name + ".vakata", data);
435
+ },
436
+ _get : function () {
437
+ return {
438
+ "data" : vakata_dnd.data,
439
+ "element" : vakata_dnd.element,
440
+ "helper" : vakata_dnd.helper
441
+ };
442
+ },
443
+ _clean : function () {
444
+ if(vakata_dnd.helper) { vakata_dnd.helper.remove(); }
445
+ if(vakata_dnd.scroll_i) { clearInterval(vakata_dnd.scroll_i); vakata_dnd.scroll_i = false; }
446
+ vakata_dnd = {
447
+ element : false,
448
+ target : false,
449
+ is_down : false,
450
+ is_drag : false,
451
+ helper : false,
452
+ helper_w: 0,
453
+ data : false,
454
+ init_x : 0,
455
+ init_y : 0,
456
+ scroll_l: 0,
457
+ scroll_t: 0,
458
+ scroll_e: false,
459
+ scroll_i: false,
460
+ is_touch: false
461
+ };
462
+ $(document).off("mousemove.vakata.jstree touchmove.vakata.jstree", $.vakata.dnd.drag);
463
+ $(document).off("mouseup.vakata.jstree touchend.vakata.jstree", $.vakata.dnd.stop);
464
+ },
465
+ _scroll : function (init_only) {
466
+ if(!vakata_dnd.scroll_e || (!vakata_dnd.scroll_l && !vakata_dnd.scroll_t)) {
467
+ if(vakata_dnd.scroll_i) { clearInterval(vakata_dnd.scroll_i); vakata_dnd.scroll_i = false; }
468
+ return false;
469
+ }
470
+ if(!vakata_dnd.scroll_i) {
471
+ vakata_dnd.scroll_i = setInterval($.vakata.dnd._scroll, 100);
472
+ return false;
473
+ }
474
+ if(init_only === true) { return false; }
475
+
476
+ var i = vakata_dnd.scroll_e.scrollTop(),
477
+ j = vakata_dnd.scroll_e.scrollLeft();
478
+ vakata_dnd.scroll_e.scrollTop(i + vakata_dnd.scroll_t * $.vakata.dnd.settings.scroll_speed);
479
+ vakata_dnd.scroll_e.scrollLeft(j + vakata_dnd.scroll_l * $.vakata.dnd.settings.scroll_speed);
480
+ if(i !== vakata_dnd.scroll_e.scrollTop() || j !== vakata_dnd.scroll_e.scrollLeft()) {
481
+ /**
482
+ * triggered on the document when a drag causes an element to scroll
483
+ * @event
484
+ * @plugin dnd
485
+ * @name dnd_scroll.vakata
486
+ * @param {Mixed} data any data supplied with the call to $.vakata.dnd.start
487
+ * @param {DOM} element the DOM element being dragged
488
+ * @param {jQuery} helper the helper shown next to the mouse
489
+ * @param {jQuery} event the element that is scrolling
490
+ */
491
+ $.vakata.dnd._trigger("scroll", vakata_dnd.scroll_e);
492
+ }
493
+ },
494
+ start : function (e, data, html) {
495
+ if(e.type === "touchstart" && e.originalEvent && e.originalEvent.changedTouches && e.originalEvent.changedTouches[0]) {
496
+ e.pageX = e.originalEvent.changedTouches[0].pageX;
497
+ e.pageY = e.originalEvent.changedTouches[0].pageY;
498
+ e.target = document.elementFromPoint(e.originalEvent.changedTouches[0].pageX - window.pageXOffset, e.originalEvent.changedTouches[0].pageY - window.pageYOffset);
499
+ }
500
+ if(vakata_dnd.is_drag) { $.vakata.dnd.stop({}); }
501
+ try {
502
+ e.currentTarget.unselectable = "on";
503
+ e.currentTarget.onselectstart = function() { return false; };
504
+ if(e.currentTarget.style) {
505
+ e.currentTarget.style.touchAction = "none";
506
+ e.currentTarget.style.msTouchAction = "none";
507
+ e.currentTarget.style.MozUserSelect = "none";
508
+ }
509
+ } catch(ignore) { }
510
+ vakata_dnd.init_x = e.pageX;
511
+ vakata_dnd.init_y = e.pageY;
512
+ vakata_dnd.data = data;
513
+ vakata_dnd.is_down = true;
514
+ vakata_dnd.element = e.currentTarget;
515
+ vakata_dnd.target = e.target;
516
+ vakata_dnd.is_touch = e.type === "touchstart";
517
+ if(html !== false) {
518
+ vakata_dnd.helper = $("<div id='vakata-dnd'></div>").html(html).css({
519
+ "display" : "block",
520
+ "margin" : "0",
521
+ "padding" : "0",
522
+ "position" : "absolute",
523
+ "top" : "-2000px",
524
+ "lineHeight" : "16px",
525
+ "zIndex" : "10000"
526
+ });
527
+ }
528
+ $(document).on("mousemove.vakata.jstree touchmove.vakata.jstree", $.vakata.dnd.drag);
529
+ $(document).on("mouseup.vakata.jstree touchend.vakata.jstree", $.vakata.dnd.stop);
530
+ return false;
531
+ },
532
+ drag : function (e) {
533
+ if(e.type === "touchmove" && e.originalEvent && e.originalEvent.changedTouches && e.originalEvent.changedTouches[0]) {
534
+ e.pageX = e.originalEvent.changedTouches[0].pageX;
535
+ e.pageY = e.originalEvent.changedTouches[0].pageY;
536
+ e.target = document.elementFromPoint(e.originalEvent.changedTouches[0].pageX - window.pageXOffset, e.originalEvent.changedTouches[0].pageY - window.pageYOffset);
537
+ }
538
+ if(!vakata_dnd.is_down) { return; }
539
+ if(!vakata_dnd.is_drag) {
540
+ if(
541
+ Math.abs(e.pageX - vakata_dnd.init_x) > (vakata_dnd.is_touch ? $.vakata.dnd.settings.threshold_touch : $.vakata.dnd.settings.threshold) ||
542
+ Math.abs(e.pageY - vakata_dnd.init_y) > (vakata_dnd.is_touch ? $.vakata.dnd.settings.threshold_touch : $.vakata.dnd.settings.threshold)
543
+ ) {
544
+ if(vakata_dnd.helper) {
545
+ vakata_dnd.helper.appendTo(document.body);
546
+ vakata_dnd.helper_w = vakata_dnd.helper.outerWidth();
547
+ }
548
+ vakata_dnd.is_drag = true;
549
+ $(vakata_dnd.target).one('click.vakata', false);
550
+ /**
551
+ * triggered on the document when a drag starts
552
+ * @event
553
+ * @plugin dnd
554
+ * @name dnd_start.vakata
555
+ * @param {Mixed} data any data supplied with the call to $.vakata.dnd.start
556
+ * @param {DOM} element the DOM element being dragged
557
+ * @param {jQuery} helper the helper shown next to the mouse
558
+ * @param {Object} event the event that caused the start (probably mousemove)
559
+ */
560
+ $.vakata.dnd._trigger("start", e);
561
+ }
562
+ else { return; }
563
+ }
564
+
565
+ var d = false, w = false,
566
+ dh = false, wh = false,
567
+ dw = false, ww = false,
568
+ dt = false, dl = false,
569
+ ht = false, hl = false;
570
+
571
+ vakata_dnd.scroll_t = 0;
572
+ vakata_dnd.scroll_l = 0;
573
+ vakata_dnd.scroll_e = false;
574
+ $($(e.target).parentsUntil("body").addBack().get().reverse())
575
+ .filter(function () {
576
+ return (/^auto|scroll$/).test($(this).css("overflow")) &&
577
+ (this.scrollHeight > this.offsetHeight || this.scrollWidth > this.offsetWidth);
578
+ })
579
+ .each(function () {
580
+ var t = $(this), o = t.offset();
581
+ if(this.scrollHeight > this.offsetHeight) {
582
+ if(o.top + t.height() - e.pageY < $.vakata.dnd.settings.scroll_proximity) { vakata_dnd.scroll_t = 1; }
583
+ if(e.pageY - o.top < $.vakata.dnd.settings.scroll_proximity) { vakata_dnd.scroll_t = -1; }
584
+ }
585
+ if(this.scrollWidth > this.offsetWidth) {
586
+ if(o.left + t.width() - e.pageX < $.vakata.dnd.settings.scroll_proximity) { vakata_dnd.scroll_l = 1; }
587
+ if(e.pageX - o.left < $.vakata.dnd.settings.scroll_proximity) { vakata_dnd.scroll_l = -1; }
588
+ }
589
+ if(vakata_dnd.scroll_t || vakata_dnd.scroll_l) {
590
+ vakata_dnd.scroll_e = $(this);
591
+ return false;
592
+ }
593
+ });
594
+
595
+ if(!vakata_dnd.scroll_e) {
596
+ d = $(document); w = $(window);
597
+ dh = d.height(); wh = w.height();
598
+ dw = d.width(); ww = w.width();
599
+ dt = d.scrollTop(); dl = d.scrollLeft();
600
+ if(dh > wh && e.pageY - dt < $.vakata.dnd.settings.scroll_proximity) { vakata_dnd.scroll_t = -1; }
601
+ if(dh > wh && wh - (e.pageY - dt) < $.vakata.dnd.settings.scroll_proximity) { vakata_dnd.scroll_t = 1; }
602
+ if(dw > ww && e.pageX - dl < $.vakata.dnd.settings.scroll_proximity) { vakata_dnd.scroll_l = -1; }
603
+ if(dw > ww && ww - (e.pageX - dl) < $.vakata.dnd.settings.scroll_proximity) { vakata_dnd.scroll_l = 1; }
604
+ if(vakata_dnd.scroll_t || vakata_dnd.scroll_l) {
605
+ vakata_dnd.scroll_e = d;
606
+ }
607
+ }
608
+ if(vakata_dnd.scroll_e) { $.vakata.dnd._scroll(true); }
609
+
610
+ if(vakata_dnd.helper) {
611
+ ht = parseInt(e.pageY + $.vakata.dnd.settings.helper_top, 10);
612
+ hl = parseInt(e.pageX + $.vakata.dnd.settings.helper_left, 10);
613
+ if(dh && ht + 25 > dh) { ht = dh - 50; }
614
+ if(dw && hl + vakata_dnd.helper_w > dw) { hl = dw - (vakata_dnd.helper_w + 2); }
615
+ vakata_dnd.helper.css({
616
+ left : hl + "px",
617
+ top : ht + "px"
618
+ });
619
+ }
620
+ /**
621
+ * triggered on the document when a drag is in progress
622
+ * @event
623
+ * @plugin dnd
624
+ * @name dnd_move.vakata
625
+ * @param {Mixed} data any data supplied with the call to $.vakata.dnd.start
626
+ * @param {DOM} element the DOM element being dragged
627
+ * @param {jQuery} helper the helper shown next to the mouse
628
+ * @param {Object} event the event that caused this to trigger (most likely mousemove)
629
+ */
630
+ $.vakata.dnd._trigger("move", e);
631
+ return false;
632
+ },
633
+ stop : function (e) {
634
+ if(e.type === "touchend" && e.originalEvent && e.originalEvent.changedTouches && e.originalEvent.changedTouches[0]) {
635
+ e.pageX = e.originalEvent.changedTouches[0].pageX;
636
+ e.pageY = e.originalEvent.changedTouches[0].pageY;
637
+ e.target = document.elementFromPoint(e.originalEvent.changedTouches[0].pageX - window.pageXOffset, e.originalEvent.changedTouches[0].pageY - window.pageYOffset);
638
+ }
639
+ if(vakata_dnd.is_drag) {
640
+ /**
641
+ * triggered on the document when a drag stops (the dragged element is dropped)
642
+ * @event
643
+ * @plugin dnd
644
+ * @name dnd_stop.vakata
645
+ * @param {Mixed} data any data supplied with the call to $.vakata.dnd.start
646
+ * @param {DOM} element the DOM element being dragged
647
+ * @param {jQuery} helper the helper shown next to the mouse
648
+ * @param {Object} event the event that caused the stop
649
+ */
650
+ if (e.target !== vakata_dnd.target) {
651
+ $(vakata_dnd.target).off('click.vakata');
652
+ }
653
+ $.vakata.dnd._trigger("stop", e);
654
+ }
655
+ else {
656
+ if(e.type === "touchend" && e.target === vakata_dnd.target) {
657
+ var to = setTimeout(function () { $(e.target).click(); }, 100);
658
+ $(e.target).one('click', function() { if(to) { clearTimeout(to); } });
659
+ }
660
+ }
661
+ $.vakata.dnd._clean();
662
+ return false;
663
+ }
664
+ };
665
+ }($));
666
+
667
+ // include the dnd plugin by default
668
+ // $.jstree.defaults.plugins.push("dnd");
669
+ }));