sequenceserver 2.0.0.rc8 → 2.0.0

data/public/config.js

@@ -1,146 +1,147 @@
 System.config({
-  defaultJSExtensions: true,
-  transpiler: "babel",
-  babelOptions: {
-    "optional": [
-      "runtime",
-      "optimisation.modules.system"
-    ],
-    "blacklist": [
-      "strict"
-    ]
-  },
-  paths: {
-    "github:*": "vendor/github/*",
-    "npm:*": "vendor/npm/*"
-  },
-
-  map: {
-    "babel": "npm:babel-core@5.8.23",
-    "babel-runtime": "npm:babel-runtime@5.8.20",
-    "bootstrap": "github:twbs/bootstrap@3.3.5",
-    "core-js": "npm:core-js@1.1.2",
-    "d3": "github:mbostock/d3@3.5.6",
-    "font-awesome": "npm:font-awesome@4.4.0",
-    "jquery": "github:components/jquery@2.1.4",
-    "jquery-ui": "github:components/jqueryui@1.11.4",
-    "nicgirault/circosJs": "github:nicgirault/circosJs@1.7.0",
-    "react": "npm:react@0.13.3",
-    "underscore": "npm:underscore@1.8.3",
-    "webshim": "npm:webshim@1.15.8",
-    "github:components/jqueryui@1.11.4": {
-      "jquery": "github:components/jquery@2.1.4"
-    },
-    "github:jspm/nodelibs-buffer@0.1.0": {
-      "buffer": "npm:buffer@3.4.3"
-    },
-    "github:jspm/nodelibs-events@0.1.1": {
-      "events": "npm:events@1.0.2"
-    },
-    "github:jspm/nodelibs-path@0.1.0": {
-      "path-browserify": "npm:path-browserify@0.0.0"
-    },
-    "github:jspm/nodelibs-process@0.1.1": {
-      "process": "npm:process@0.10.1"
-    },
-    "github:jspm/nodelibs-stream@0.1.0": {
-      "stream-browserify": "npm:stream-browserify@1.0.0"
-    },
-    "github:jspm/nodelibs-util@0.1.0": {
-      "util": "npm:util@0.10.3"
-    },
-    "github:twbs/bootstrap@3.3.5": {
-      "jquery": "github:components/jquery@2.1.4"
-    },
-    "npm:amdefine@1.0.0": {
-      "fs": "github:jspm/nodelibs-fs@0.1.2",
-      "module": "github:jspm/nodelibs-module@0.1.0",
-      "path": "github:jspm/nodelibs-path@0.1.0",
-      "process": "github:jspm/nodelibs-process@0.1.1"
-    },
-    "npm:babel-runtime@5.8.20": {
-      "process": "github:jspm/nodelibs-process@0.1.1"
-    },
-    "npm:buffer@3.4.3": {
-      "base64-js": "npm:base64-js@0.0.8",
-      "ieee754": "npm:ieee754@1.1.6",
-      "is-array": "npm:is-array@1.0.1"
-    },
-    "npm:core-js@1.1.2": {
-      "fs": "github:jspm/nodelibs-fs@0.1.2",
-      "process": "github:jspm/nodelibs-process@0.1.1",
-      "systemjs-json": "github:systemjs/plugin-json@0.1.0"
-    },
-    "npm:core-util-is@1.0.1": {
-      "buffer": "github:jspm/nodelibs-buffer@0.1.0"
-    },
-    "npm:envify@3.4.0": {
-      "jstransform": "npm:jstransform@10.1.0",
-      "process": "github:jspm/nodelibs-process@0.1.1",
-      "through": "npm:through@2.3.8"
+    defaultJSExtensions: true,
+    transpiler: 'babel',
+    babelOptions: {
+        'optional': [
+            'runtime',
+            'optimisation.modules.system'
+        ],
+        'blacklist': [
+            'strict'
+        ]
+    },
+    paths: {
+        'github:*': 'vendor/github/*',
+        'npm:*': 'vendor/npm/*'
     },
-    "npm:esprima-fb@13001.1001.0-dev-harmony-fb": {
-      "fs": "github:jspm/nodelibs-fs@0.1.2",
-      "process": "github:jspm/nodelibs-process@0.1.1"
-    },
-    "npm:font-awesome@4.4.0": {
-      "css": "github:systemjs/plugin-css@0.1.15"
-    },
-    "npm:inherits@2.0.1": {
-      "util": "github:jspm/nodelibs-util@0.1.0"
-    },
-    "npm:jstransform@10.1.0": {
-      "base62": "npm:base62@0.1.1",
-      "buffer": "github:jspm/nodelibs-buffer@0.1.0",
-      "esprima-fb": "npm:esprima-fb@13001.1001.0-dev-harmony-fb",
-      "fs": "github:jspm/nodelibs-fs@0.1.2",
-      "process": "github:jspm/nodelibs-process@0.1.1",
-      "source-map": "npm:source-map@0.1.31"
-    },
-    "npm:path-browserify@0.0.0": {
-      "process": "github:jspm/nodelibs-process@0.1.1"
-    },
-    "npm:react@0.13.3": {
-      "buffer": "github:jspm/nodelibs-buffer@0.1.0",
-      "envify": "npm:envify@3.4.0",
-      "process": "github:jspm/nodelibs-process@0.1.1"
-    },
-    "npm:readable-stream@1.1.13": {
-      "buffer": "github:jspm/nodelibs-buffer@0.1.0",
-      "core-util-is": "npm:core-util-is@1.0.1",
-      "events": "github:jspm/nodelibs-events@0.1.1",
-      "inherits": "npm:inherits@2.0.1",
-      "isarray": "npm:isarray@0.0.1",
-      "process": "github:jspm/nodelibs-process@0.1.1",
-      "stream-browserify": "npm:stream-browserify@1.0.0",
-      "string_decoder": "npm:string_decoder@0.10.31"
-    },
-    "npm:source-map@0.1.31": {
-      "amdefine": "npm:amdefine@1.0.0",
-      "fs": "github:jspm/nodelibs-fs@0.1.2",
-      "path": "github:jspm/nodelibs-path@0.1.0",
-      "process": "github:jspm/nodelibs-process@0.1.1"
-    },
-    "npm:stream-browserify@1.0.0": {
-      "events": "github:jspm/nodelibs-events@0.1.1",
-      "inherits": "npm:inherits@2.0.1",
-      "readable-stream": "npm:readable-stream@1.1.13"
-    },
-    "npm:string_decoder@0.10.31": {
-      "buffer": "github:jspm/nodelibs-buffer@0.1.0"
-    },
-    "npm:through@2.3.8": {
-      "process": "github:jspm/nodelibs-process@0.1.1",
-      "stream": "github:jspm/nodelibs-stream@0.1.0"
-    },
-    "npm:util@0.10.3": {
-      "inherits": "npm:inherits@2.0.1",
-      "process": "github:jspm/nodelibs-process@0.1.1"
-    },
-    "npm:webshim@1.15.8": {
-      "fs": "github:jspm/nodelibs-fs@0.1.2",
-      "path": "github:jspm/nodelibs-path@0.1.0",
-      "process": "github:jspm/nodelibs-process@0.1.1"
+
+    map: {
+        'babel': 'npm:babel-core@5.8.23',
+        'babel-runtime': 'npm:babel-runtime@5.8.20',
+        'bootstrap': 'github:twbs/bootstrap@3.3.5',
+        'core-js': 'npm:core-js@1.1.2',
+        'd3': 'github:mbostock/d3@3.5.6',
+        'font-awesome': 'npm:font-awesome@4.4.0',
+        'jquery': 'github:components/jquery@2.1.4',
+        'jquery-ui': 'github:components/jqueryui@1.11.4',
+        'nicgirault/circosJs': 'github:nicgirault/circosJs@1.7.0',
+        'react': 'npm:react@0.13.3',
+        'underscore': 'npm:underscore@1.8.3',
+        'vakata/jstree': 'github:vakata/jstree@3.3.8',
+        'webshim': 'npm:webshim@1.15.8',
+        'github:components/jqueryui@1.11.4': {
+            'jquery': 'github:components/jquery@2.1.4'
+        },
+        'github:jspm/nodelibs-buffer@0.1.0': {
+            'buffer': 'npm:buffer@3.4.3'
+        },
+        'github:jspm/nodelibs-events@0.1.1': {
+            'events': 'npm:events@1.0.2'
+        },
+        'github:jspm/nodelibs-path@0.1.0': {
+            'path-browserify': 'npm:path-browserify@0.0.0'
+        },
+        'github:jspm/nodelibs-process@0.1.1': {
+            'process': 'npm:process@0.10.1'
+        },
+        'github:jspm/nodelibs-stream@0.1.0': {
+            'stream-browserify': 'npm:stream-browserify@1.0.0'
+        },
+        'github:jspm/nodelibs-util@0.1.0': {
+            'util': 'npm:util@0.10.3'
+        },
+        'github:twbs/bootstrap@3.3.5': {
+            'jquery': 'github:components/jquery@2.1.4'
+        },
+        'npm:amdefine@1.0.0': {
+            'fs': 'github:jspm/nodelibs-fs@0.1.2',
+            'module': 'github:jspm/nodelibs-module@0.1.0',
+            'path': 'github:jspm/nodelibs-path@0.1.0',
+            'process': 'github:jspm/nodelibs-process@0.1.1'
+        },
+        'npm:babel-runtime@5.8.20': {
+            'process': 'github:jspm/nodelibs-process@0.1.1'
+        },
+        'npm:buffer@3.4.3': {
+            'base64-js': 'npm:base64-js@0.0.8',
+            'ieee754': 'npm:ieee754@1.1.6',
+            'is-array': 'npm:is-array@1.0.1'
+        },
+        'npm:core-js@1.1.2': {
+            'fs': 'github:jspm/nodelibs-fs@0.1.2',
+            'process': 'github:jspm/nodelibs-process@0.1.1',
+            'systemjs-json': 'github:systemjs/plugin-json@0.1.0'
+        },
+        'npm:core-util-is@1.0.1': {
+            'buffer': 'github:jspm/nodelibs-buffer@0.1.0'
+        },
+        'npm:envify@3.4.0': {
+            'jstransform': 'npm:jstransform@10.1.0',
+            'process': 'github:jspm/nodelibs-process@0.1.1',
+            'through': 'npm:through@2.3.8'
+        },
+        'npm:esprima-fb@13001.1001.0-dev-harmony-fb': {
+            'fs': 'github:jspm/nodelibs-fs@0.1.2',
+            'process': 'github:jspm/nodelibs-process@0.1.1'
+        },
+        'npm:font-awesome@4.4.0': {
+            'css': 'github:systemjs/plugin-css@0.1.15'
+        },
+        'npm:inherits@2.0.1': {
+            'util': 'github:jspm/nodelibs-util@0.1.0'
+        },
+        'npm:jstransform@10.1.0': {
+            'base62': 'npm:base62@0.1.1',
+            'buffer': 'github:jspm/nodelibs-buffer@0.1.0',
+            'esprima-fb': 'npm:esprima-fb@13001.1001.0-dev-harmony-fb',
+            'fs': 'github:jspm/nodelibs-fs@0.1.2',
+            'process': 'github:jspm/nodelibs-process@0.1.1',
+            'source-map': 'npm:source-map@0.1.31'
+        },
+        'npm:path-browserify@0.0.0': {
+            'process': 'github:jspm/nodelibs-process@0.1.1'
+        },
+        'npm:react@0.13.3': {
+            'buffer': 'github:jspm/nodelibs-buffer@0.1.0',
+            'envify': 'npm:envify@3.4.0',
+            'process': 'github:jspm/nodelibs-process@0.1.1'
+        },
+        'npm:readable-stream@1.1.13': {
+            'buffer': 'github:jspm/nodelibs-buffer@0.1.0',
+            'core-util-is': 'npm:core-util-is@1.0.1',
+            'events': 'github:jspm/nodelibs-events@0.1.1',
+            'inherits': 'npm:inherits@2.0.1',
+            'isarray': 'npm:isarray@0.0.1',
+            'process': 'github:jspm/nodelibs-process@0.1.1',
+            'stream-browserify': 'npm:stream-browserify@1.0.0',
+            'string_decoder': 'npm:string_decoder@0.10.31'
+        },
+        'npm:source-map@0.1.31': {
+            'amdefine': 'npm:amdefine@1.0.0',
+            'fs': 'github:jspm/nodelibs-fs@0.1.2',
+            'path': 'github:jspm/nodelibs-path@0.1.0',
+            'process': 'github:jspm/nodelibs-process@0.1.1'
+        },
+        'npm:stream-browserify@1.0.0': {
+            'events': 'github:jspm/nodelibs-events@0.1.1',
+            'inherits': 'npm:inherits@2.0.1',
+            'readable-stream': 'npm:readable-stream@1.1.13'
+        },
+        'npm:string_decoder@0.10.31': {
+            'buffer': 'github:jspm/nodelibs-buffer@0.1.0'
+        },
+        'npm:through@2.3.8': {
+            'process': 'github:jspm/nodelibs-process@0.1.1',
+            'stream': 'github:jspm/nodelibs-stream@0.1.0'
+        },
+        'npm:util@0.10.3': {
+            'inherits': 'npm:inherits@2.0.1',
+            'process': 'github:jspm/nodelibs-process@0.1.1'
+        },
+        'npm:webshim@1.15.8': {
+            'fs': 'github:jspm/nodelibs-fs@0.1.2',
+            'path': 'github:jspm/nodelibs-path@0.1.0',
+            'process': 'github:jspm/nodelibs-process@0.1.1'
+        }
     }
-  }
 });

data/public/css/fonts.css

@@ -3,28 +3,29 @@
  * http://stackoverflow.com/questions/11002820/why-should-we-include-ttf-eot-woff-svg-in-a-font-face
  * */
 @font-face {
-	font-family: 'Source Sans Pro';
-	font-style: normal;
-	font-weight: 400;
-	src:
-		local('Source Sans Pro'),
-		local('SourceSansPro-Regular'),
-		url('../fonts/Source_Sans_Pro_400.woff2') format('woff2'),
-		url('../fonts/Source_Sans_Pro_400.woff') format('woff'),
-		url('../fonts/Source_Sans_Pro_400.ttf') format('truetype'),
-		url('../fonts/Source_Sans_Pro_400.svg') format('svg'),
-		url('../fonts/Source_Sans_Pro_400.eot') format('embedded-opentype');
+  font-family: 'Source Sans Pro';
+  font-style: normal;
+  font-weight: 400;
+  src:
+    local('Source Sans Pro'),
+    local('SourceSansPro-Regular'),
+    url('../fonts/Source_Sans_Pro_400.woff2') format('woff2'),
+    url('../fonts/Source_Sans_Pro_400.woff') format('woff'),
+    url('../fonts/Source_Sans_Pro_400.ttf') format('truetype'),
+    url('../fonts/Source_Sans_Pro_400.svg') format('svg'),
+    url('../fonts/Source_Sans_Pro_400.eot') format('embedded-opentype');
 }
+
 @font-face {
-	font-family: 'Source Sans Pro';
-	font-style: normal;
-	font-weight: 700;
-	src:
-		local('Source Sans Pro Bold'),
-		local('SourceSansPro-Bold'),
-		url('../fonts/Source_Sans_Pro_700.woff2') format('woff2'),
-		url('../fonts/Source_Sans_Pro_700.woff') format('woff'),
-		url('../fonts/Source_Sans_Pro_700.ttf') format('truetype'),
-		url('../fonts/Source_Sans_Pro_700.svg') format('svg'),
-		url('../fonts/Source_Sans_Pro_700.eot') format('embedded-opentype');
+  font-family: 'Source Sans Pro';
+  font-style: normal;
+  font-weight: 700;
+  src:
+    local('Source Sans Pro Bold'),
+    local('SourceSansPro-Bold'),
+    url('../fonts/Source_Sans_Pro_700.woff2') format('woff2'),
+    url('../fonts/Source_Sans_Pro_700.woff') format('woff'),
+    url('../fonts/Source_Sans_Pro_700.ttf') format('truetype'),
+    url('../fonts/Source_Sans_Pro_700.svg') format('svg'),
+    url('../fonts/Source_Sans_Pro_700.eot') format('embedded-opentype');
 }