RubyGems - pho - Versions diffs - 0.5 → 0.6 - Mend

pho 0.5 → 0.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (80) hide show

data/CHANGES +17 -0
data/Rakefile +10 -2
data/bin/talis_store +37 -92
data/doc/rdoc/classes/Pho.html +11 -0
data/doc/rdoc/classes/Pho/CommandLine.html +508 -0
data/doc/rdoc/classes/Pho/DatatypeProperty.html +15 -15
data/doc/rdoc/classes/Pho/Enrichment.html +1 -1
data/doc/rdoc/classes/Pho/Enrichment/{ResourceEnricher.html → StoreEnricher.html} +158 -58
data/doc/rdoc/classes/Pho/Etags.html +36 -36
data/doc/rdoc/classes/Pho/Facet/Results.html +19 -19
data/doc/rdoc/classes/Pho/Facet/Term.html +6 -6
data/doc/rdoc/classes/Pho/FieldPredicateMap.html +94 -94
data/doc/rdoc/classes/Pho/FieldWeighting.html +14 -14
data/doc/rdoc/classes/Pho/FileManagement/AbstractFileManager.html +126 -91
data/doc/rdoc/classes/Pho/FileManagement/FileManager.html +68 -62
data/doc/rdoc/classes/Pho/FileManagement/RDFManager.html +22 -57
data/doc/rdoc/classes/Pho/Job.html +68 -67
data/doc/rdoc/classes/Pho/Jobs.html +62 -62
data/doc/rdoc/classes/Pho/QueryProfile.html +64 -64
data/doc/rdoc/classes/Pho/RDF.html +120 -0
data/doc/rdoc/classes/Pho/RDF/Parser.html +277 -0
data/doc/rdoc/classes/Pho/ResourceHash.html +1 -1
data/doc/rdoc/classes/Pho/ResourceHash/Converter.html +48 -46
data/doc/rdoc/classes/Pho/ResourceHash/SetAlgebra.html +15 -14
data/doc/rdoc/classes/Pho/Snapshot.html +36 -36
data/doc/rdoc/classes/Pho/Sparql.html +50 -0
data/doc/rdoc/classes/Pho/Sparql/SparqlClient.html +147 -68
data/doc/rdoc/classes/Pho/Sparql/SparqlHelper.html +195 -114
data/doc/rdoc/classes/Pho/Status.html +26 -26
data/doc/rdoc/classes/Pho/Store.html +271 -264
data/doc/rdoc/classes/Pho/StoreSparqlClient.html +183 -0
data/doc/rdoc/classes/Pho/Update.html +1 -0
data/doc/rdoc/classes/Pho/Update/Changeset.html +69 -68
data/doc/rdoc/classes/Pho/Update/ChangesetBuilder.html +24 -24
data/doc/rdoc/classes/Pho/Update/Changesets.html +15 -14
data/doc/rdoc/classes/Pho/Update/LiteralStatement.html +18 -18
data/doc/rdoc/classes/Pho/Update/ResourceStatement.html +24 -24
data/doc/rdoc/classes/Pho/Update/Statement.html +28 -27
data/doc/rdoc/classes/String.html +1 -1
data/doc/rdoc/created.rid +1 -1
data/doc/rdoc/files/CHANGES.html +53 -1
data/doc/rdoc/files/lib/pho/changeset_rb.html +1 -1
data/doc/rdoc/files/lib/pho/command_line_rb.html +101 -0
data/doc/rdoc/files/lib/pho/converter_rb.html +1 -1
data/doc/rdoc/files/lib/pho/enrichment_rb.html +1 -1
data/doc/rdoc/files/lib/pho/file_management_rb.html +1 -1
data/doc/rdoc/files/lib/pho/file_manager_rb.html +1 -1
data/doc/rdoc/files/lib/pho/rdf_collection_rb.html +1 -1
data/doc/rdoc/files/lib/pho/rdf_rb.html +108 -0
data/doc/rdoc/files/lib/pho/sparql_rb.html +1 -1
data/doc/rdoc/files/lib/pho/store_rb.html +8 -1
data/doc/rdoc/files/lib/pho_rb.html +4 -2
data/doc/rdoc/fr_class_index.html +6 -1
data/doc/rdoc/fr_file_index.html +2 -0
data/doc/rdoc/fr_method_index.html +192 -172
data/examples/calais/bio.txt +7 -0
data/examples/calais/dump.rb +17 -0
data/examples/calais/enlighten.rb +23 -0
data/examples/calais/output.rdf +25 -0
data/examples/sinatra/viewer.rb +20 -0
data/lib/pho.rb +4 -1
data/lib/pho/changeset.rb +17 -1
data/lib/pho/command_line.rb +166 -0
data/lib/pho/converter.rb +8 -3
data/lib/pho/enrichment.rb +93 -28
data/lib/pho/file_management.rb +32 -19
data/lib/pho/file_manager.rb +22 -26
data/lib/pho/rdf.rb +74 -0
data/lib/pho/rdf_collection.rb +2 -17
data/lib/pho/sparql.rb +150 -38
data/lib/pho/store.rb +28 -2
data/tests/tc_contentbox.rb +41 -0
data/tests/tc_enrichment.rb +41 -4
data/tests/tc_file_manager.rb +97 -7
data/tests/tc_rdf_collection.rb +25 -13
data/tests/tc_rdf_parser.rb +37 -0
data/tests/tc_sparql.rb +72 -2
data/tests/tc_sparql_helper.rb +16 -0
data/tests/ts_pho.rb +2 -1
metadata +20 -3

data/doc/rdoc/classes/Pho/RDF.html ADDED

@@ -0,0 +1,120 @@
+<?xml version="1.0" encoding="iso-8859-1"?>
+<!DOCTYPE html
+     PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+     "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+<head>
+  <title>Module: Pho::RDF</title>
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
+  <meta http-equiv="Content-Script-Type" content="text/javascript" />
+  <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
+  <script type="text/javascript">
+  // <![CDATA[
+  function popupCode( url ) {
+    window.open(url, "Code", "resizable=yes,scrollbars=yes,toolbar=no,status=no,height=150,width=400")
+  }
+  function toggleCode( id ) {
+    if ( document.getElementById )
+      elem = document.getElementById( id );
+    else if ( document.all )
+      elem = eval( "document.all." + id );
+    else
+      return false;
+    elemStyle = elem.style;
+    if ( elemStyle.display != "block" ) {
+      elemStyle.display = "block"
+    } else {
+      elemStyle.display = "none"
+    }
+    return true;
+  }
+  // Make codeblocks hidden by default
+  document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }</style>" )
+  // ]]>
+  </script>
+</head>
+<body>
+    <div id="classHeader">
+        <table class="header-table">
+        <tr class="top-aligned-row">
+          <td><strong>Module</strong></td>
+          <td class="class-name-in-header">Pho::RDF</td>
+        </tr>
+        <tr class="top-aligned-row">
+            <td><strong>In:</strong></td>
+            <td>
+                <a href="../../files/lib/pho/rdf_rb.html">
+                lib/pho/rdf.rb
+                </a>
+        <br />
+            </td>
+        </tr>
+        </table>
+    </div>
+  <!-- banner header -->
+  <div id="bodyContent">
+  <div id="contextContent">
+    <div id="description">
+      <p>
+Module containing general <a href="RDF.html">RDF</a> utilities and classes
+</p>
+<p>
+Dependent on the redland ruby bindings
+</p>
+    </div>
+   </div>
+  </div>
+    <!-- if includes -->
+    <div id="section">
+    <div id="class-list">
+      <h3 class="section-bar">Classes and Modules</h3>
+      Class <a href="RDF/Parser.html" class="link">Pho::RDF::Parser</a><br />
+    </div>
+    <!-- if method_list -->
+  </div>
+<div id="validator-badges">
+  <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
+</div>
+</body>
+</html>

data/doc/rdoc/classes/Pho/RDF/Parser.html ADDED

@@ -0,0 +1,277 @@
+<?xml version="1.0" encoding="iso-8859-1"?>
+<!DOCTYPE html
+     PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+     "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+<head>
+  <title>Class: Pho::RDF::Parser</title>
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
+  <meta http-equiv="Content-Script-Type" content="text/javascript" />
+  <link rel="stylesheet" href="../../.././rdoc-style.css" type="text/css" media="screen" />
+  <script type="text/javascript">
+  // <![CDATA[
+  function popupCode( url ) {
+    window.open(url, "Code", "resizable=yes,scrollbars=yes,toolbar=no,status=no,height=150,width=400")
+  }
+  function toggleCode( id ) {
+    if ( document.getElementById )
+      elem = document.getElementById( id );
+    else if ( document.all )
+      elem = eval( "document.all." + id );
+    else
+      return false;
+    elemStyle = elem.style;
+    if ( elemStyle.display != "block" ) {
+      elemStyle.display = "block"
+    } else {
+      elemStyle.display = "none"
+    }
+    return true;
+  }
+  // Make codeblocks hidden by default
+  document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }</style>" )
+  // ]]>
+  </script>
+</head>
+<body>
+    <div id="classHeader">
+        <table class="header-table">
+        <tr class="top-aligned-row">
+          <td><strong>Class</strong></td>
+          <td class="class-name-in-header">Pho::RDF::Parser</td>
+        </tr>
+        <tr class="top-aligned-row">
+            <td><strong>In:</strong></td>
+            <td>
+                <a href="../../../files/lib/pho/rdf_rb.html">
+                lib/pho/rdf.rb
+                </a>
+        <br />
+            </td>
+        </tr>
+        <tr class="top-aligned-row">
+            <td><strong>Parent:</strong></td>
+            <td>
+                Object
+            </td>
+        </tr>
+        </table>
+    </div>
+  <!-- banner header -->
+  <div id="bodyContent">
+  <div id="contextContent">
+    <div id="description">
+      <p>
+General <a href="../RDF.html">RDF</a> parsing utilities.
+</p>
+<p>
+Currently a convenience wrapper around the Redland Ruby bindings
+</p>
+    </div>
+   </div>
+    <div id="method-list">
+      <h3 class="section-bar">Methods</h3>
+      <div class="name-list">
+      <a href="#M000084">parse_ntriples</a>&nbsp;&nbsp;
+      <a href="#M000085">parse_ntriples_from_string</a>&nbsp;&nbsp;
+      <a href="#M000086">store_ntriples</a>&nbsp;&nbsp;
+      <a href="#M000087">store_ntriples_from_string</a>&nbsp;&nbsp;
+      </div>
+    </div>
+  </div>
+    <!-- if includes -->
+    <div id="section">
+    <!-- if method_list -->
+    <div id="methods">
+      <h3 class="section-bar">Public Class methods</h3>
+      <div id="method-M000084" class="method-detail">
+        <a name="M000084"></a>
+        <div class="method-heading">
+          <a href="#M000084" class="method-signature">
+          <span class="method-name">parse_ntriples</span><span class="method-args">(file, base_uri=nil)</span>
+          </a>
+        </div>
+        <div class="method-description">
+          <p>
+Parse a file containing ntriples into <a href="../RDF.html">RDF</a>/XML.
+Returns a string
+</p>
+<pre>
+ file:: File object
+ base_uri:: optional base uri to be used when parsing. If not set, then uris are resolved
+ relative to the File
+</pre>
+          <p><a class="source-toggle" href="#"
+            onclick="toggleCode('M000084-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000084-source">
+<pre>
+<span class="ruby-comment cmt"># File lib/pho/rdf.rb, line 24</span>
+      <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Parser</span>.<span class="ruby-identifier">parse_ntriples</span>(<span class="ruby-identifier">file</span>, <span class="ruby-identifier">base_uri</span>=<span class="ruby-keyword kw">nil</span>)
+        <span class="ruby-identifier">model</span> = <span class="ruby-constant">Redland</span><span class="ruby-operator">::</span><span class="ruby-constant">Model</span>.<span class="ruby-identifier">new</span>()
+        <span class="ruby-identifier">parser</span> = <span class="ruby-constant">Redland</span><span class="ruby-operator">::</span><span class="ruby-constant">Parser</span>.<span class="ruby-identifier">new</span>(<span class="ruby-value str">&quot;ntriples&quot;</span>, <span class="ruby-value str">&quot;&quot;</span>)
+        <span class="ruby-identifier">uri</span> = <span class="ruby-node">&quot;file:#{file.path}&quot;</span>
+        <span class="ruby-identifier">base_uri</span> = <span class="ruby-identifier">uri</span> <span class="ruby-keyword kw">unless</span> <span class="ruby-identifier">base_uri</span>
+        <span class="ruby-identifier">parser</span>.<span class="ruby-identifier">parse_into_model</span>(<span class="ruby-identifier">model</span>, <span class="ruby-identifier">uri</span>, <span class="ruby-identifier">base_uri</span>)
+        <span class="ruby-identifier">serializer</span> = <span class="ruby-constant">Redland</span><span class="ruby-operator">::</span><span class="ruby-constant">Serializer</span>.<span class="ruby-identifier">new</span>( <span class="ruby-value str">&quot;rdfxml&quot;</span>, <span class="ruby-value str">&quot;application/rdf+xml&quot;</span> )
+        <span class="ruby-identifier">data</span> = <span class="ruby-identifier">serializer</span>.<span class="ruby-identifier">model_to_string</span>(<span class="ruby-constant">Redland</span><span class="ruby-operator">::</span><span class="ruby-constant">Uri</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">base_uri</span>), <span class="ruby-identifier">model</span>)
+        <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">data</span>
+      <span class="ruby-keyword kw">end</span>
+</pre>
+          </div>
+        </div>
+      </div>
+      <div id="method-M000085" class="method-detail">
+        <a name="M000085"></a>
+        <div class="method-heading">
+          <a href="#M000085" class="method-signature">
+          <span class="method-name">parse_ntriples_from_string</span><span class="method-args">(string, base_uri)</span>
+          </a>
+        </div>
+        <div class="method-description">
+          <p>
+Parse a string containing ntriples into <a href="../RDF.html">RDF</a>/XML.
+Returns a string
+</p>
+<pre>
+ string:: the string containing the data
+ base_uri:: base uri for parsing the data
+</pre>
+          <p><a class="source-toggle" href="#"
+            onclick="toggleCode('M000085-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000085-source">
+<pre>
+<span class="ruby-comment cmt"># File lib/pho/rdf.rb, line 39</span>
+      <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Parser</span>.<span class="ruby-identifier">parse_ntriples_from_string</span>(<span class="ruby-identifier">string</span>, <span class="ruby-identifier">base_uri</span>)
+        <span class="ruby-identifier">model</span> = <span class="ruby-constant">Redland</span><span class="ruby-operator">::</span><span class="ruby-constant">Model</span>.<span class="ruby-identifier">new</span>()
+        <span class="ruby-identifier">parser</span> = <span class="ruby-constant">Redland</span><span class="ruby-operator">::</span><span class="ruby-constant">Parser</span>.<span class="ruby-identifier">new</span>(<span class="ruby-value str">&quot;ntriples&quot;</span>, <span class="ruby-value str">&quot;&quot;</span>)
+        <span class="ruby-identifier">parser</span>.<span class="ruby-identifier">parse_string_into_model</span>(<span class="ruby-identifier">model</span>, <span class="ruby-identifier">string</span>, <span class="ruby-constant">Redland</span><span class="ruby-operator">::</span><span class="ruby-constant">Uri</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">base_uri</span>))
+        <span class="ruby-identifier">serializer</span> = <span class="ruby-constant">Redland</span><span class="ruby-operator">::</span><span class="ruby-constant">Serializer</span>.<span class="ruby-identifier">new</span>( <span class="ruby-value str">&quot;rdfxml&quot;</span>, <span class="ruby-value str">&quot;application/rdf+xml&quot;</span> )
+        <span class="ruby-identifier">data</span> = <span class="ruby-identifier">serializer</span>.<span class="ruby-identifier">model_to_string</span>(<span class="ruby-constant">Redland</span><span class="ruby-operator">::</span><span class="ruby-constant">Uri</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">base_uri</span>), <span class="ruby-identifier">model</span>)
+        <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">data</span>
+      <span class="ruby-keyword kw">end</span>
+</pre>
+          </div>
+        </div>
+      </div>
+      <div id="method-M000086" class="method-detail">
+        <a name="M000086"></a>
+        <div class="method-heading">
+          <a href="#M000086" class="method-signature">
+          <span class="method-name">store_ntriples</span><span class="method-args">(file, store, base_uri=nil, graph_name=nil)</span>
+          </a>
+        </div>
+        <div class="method-description">
+          <p>
+Convenience method to parse an ntriples file and store it a Platform store
+</p>
+<pre>
+ file:: the file to parse
+ store:: the store to receive the data
+ base_uri:: base uri against which the data is parsed
+ graph_name:: uri of graph in store
+</pre>
+          <p><a class="source-toggle" href="#"
+            onclick="toggleCode('M000086-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000086-source">
+<pre>
+<span class="ruby-comment cmt"># File lib/pho/rdf.rb, line 54</span>
+      <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Parser</span>.<span class="ruby-identifier">store_ntriples</span>(<span class="ruby-identifier">file</span>, <span class="ruby-identifier">store</span>, <span class="ruby-identifier">base_uri</span>=<span class="ruby-keyword kw">nil</span>, <span class="ruby-identifier">graph_name</span>=<span class="ruby-keyword kw">nil</span>)
+         <span class="ruby-identifier">data</span> = <span class="ruby-constant">Parser</span>.<span class="ruby-identifier">parse_ntriples</span>(<span class="ruby-identifier">file</span>, <span class="ruby-identifier">base_uri</span>)
+         <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">store</span>.<span class="ruby-identifier">store_data</span>(<span class="ruby-identifier">data</span>, <span class="ruby-identifier">graph_name</span>)
+      <span class="ruby-keyword kw">end</span>
+</pre>
+          </div>
+        </div>
+      </div>
+      <div id="method-M000087" class="method-detail">
+        <a name="M000087"></a>
+        <div class="method-heading">
+          <a href="#M000087" class="method-signature">
+          <span class="method-name">store_ntriples_from_string</span><span class="method-args">(string, store, base_uri, graph_name=nil)</span>
+          </a>
+        </div>
+        <div class="method-description">
+          <p>
+Convenience method to parse an ntriples string and store it a Platform
+store
+</p>
+<pre>
+ string:: the data to parse
+ store:: the store to receive the data
+ base_uri:: base uri against which the data is parsed
+ graph_name:: uri of graph in store
+</pre>
+          <p><a class="source-toggle" href="#"
+            onclick="toggleCode('M000087-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000087-source">
+<pre>
+<span class="ruby-comment cmt"># File lib/pho/rdf.rb, line 65</span>
+      <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Parser</span>.<span class="ruby-identifier">store_ntriples_from_string</span>(<span class="ruby-identifier">string</span>, <span class="ruby-identifier">store</span>, <span class="ruby-identifier">base_uri</span>, <span class="ruby-identifier">graph_name</span>=<span class="ruby-keyword kw">nil</span>)
+         <span class="ruby-identifier">data</span> = <span class="ruby-constant">Parser</span>.<span class="ruby-identifier">parse_ntriples_from_string</span>(<span class="ruby-identifier">string</span>, <span class="ruby-identifier">base_uri</span>)
+         <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">store</span>.<span class="ruby-identifier">store_data</span>(<span class="ruby-identifier">data</span>, <span class="ruby-identifier">graph_name</span>)
+      <span class="ruby-keyword kw">end</span>
+</pre>
+          </div>
+        </div>
+      </div>
+    </div>
+  </div>
+<div id="validator-badges">
+  <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
+</div>
+</body>
+</html>

data/doc/rdoc/classes/Pho/ResourceHash.html CHANGED

@@ -79,7 +79,7 @@
     <div id="description">
       <p>
 Module providing code for manipulating resource hashes structured according
-to the RDF in JSON spec
+to the <a href="RDF.html">RDF</a> in JSON spec
 </p>
     </div>

data/doc/rdoc/classes/Pho/ResourceHash/Converter.html CHANGED

@@ -92,12 +92,12 @@ Class for converting to and from resource hashes
       <h3 class="section-bar">Methods</h3>
       <div class="name-list">
-      <a href="#M000077">parse</a>&nbsp;&nbsp;
-      <a href="#M000073">parse_json</a>&nbsp;&nbsp;
-      <a href="#M000075">parse_ntriples</a>&nbsp;&nbsp;
-      <a href="#M000074">parse_rdfxml</a>&nbsp;&nbsp;
-      <a href="#M000076">parse_turtle</a>&nbsp;&nbsp;
-      <a href="#M000078">serialize_json</a>&nbsp;&nbsp;
+      <a href="#M000080">parse</a>&nbsp;&nbsp;
+      <a href="#M000076">parse_json</a>&nbsp;&nbsp;
+      <a href="#M000078">parse_ntriples</a>&nbsp;&nbsp;
+      <a href="#M000077">parse_rdfxml</a>&nbsp;&nbsp;
+      <a href="#M000079">parse_turtle</a>&nbsp;&nbsp;
+      <a href="#M000081">serialize_json</a>&nbsp;&nbsp;
       </div>
     </div>
@@ -119,11 +119,11 @@ Class for converting to and from resource hashes
     <div id="methods">
       <h3 class="section-bar">Public Class methods</h3>
-      <div id="method-M000077" class="method-detail">
-        <a name="M000077"></a>
+      <div id="method-M000080" class="method-detail">
+        <a name="M000080"></a>
         <div class="method-heading">
-          <a href="#M000077" class="method-signature">
+          <a href="#M000080" class="method-signature">
           <span class="method-name">parse</span><span class="method-args">(data, base_uri, format=&quot;rdfxml&quot;)</span>
           </a>
         </div>
@@ -139,10 +139,10 @@ href="../ResourceHash.html">ResourceHash</a>
  base_uri:: base uri of the data
 </pre>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000077-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000077-source">
+            onclick="toggleCode('M000080-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000080-source">
 <pre>
-<span class="ruby-comment cmt"># File lib/pho/converter.rb, line 48</span>
+<span class="ruby-comment cmt"># File lib/pho/converter.rb, line 53</span>
       <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Converter</span>.<span class="ruby-identifier">parse</span>(<span class="ruby-identifier">data</span>, <span class="ruby-identifier">base_uri</span>, <span class="ruby-identifier">format</span>=<span class="ruby-value str">&quot;rdfxml&quot;</span>)
         <span class="ruby-identifier">model</span> = <span class="ruby-constant">Redland</span><span class="ruby-operator">::</span><span class="ruby-constant">Model</span>.<span class="ruby-identifier">new</span>()
         <span class="ruby-keyword kw">case</span> <span class="ruby-identifier">format</span>
@@ -162,28 +162,29 @@ href="../ResourceHash.html">ResourceHash</a>
         </div>
       </div>
-      <div id="method-M000073" class="method-detail">
-        <a name="M000073"></a>
+      <div id="method-M000076" class="method-detail">
+        <a name="M000076"></a>
         <div class="method-heading">
-          <a href="#M000073" class="method-signature">
+          <a href="#M000076" class="method-signature">
           <span class="method-name">parse_json</span><span class="method-args">(json)</span>
           </a>
         </div>
         <div class="method-description">
           <p>
-Parse JSON structured according to the RDF-in-JSON specification into a
-Ruby resource hash. Simply invokes the JSON parser.
+Parse JSON structured according to the <a
+href="../RDF.html">RDF</a>-in-JSON specification into a Ruby resource hash.
+Simply invokes the JSON parser.
 </p>
 <pre>
  json:: valid RDF-in-JSON
 </pre>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000073-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000073-source">
+            onclick="toggleCode('M000076-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000076-source">
 <pre>
-<span class="ruby-comment cmt"># File lib/pho/converter.rb, line 18</span>
+<span class="ruby-comment cmt"># File lib/pho/converter.rb, line 23</span>
       <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Converter</span>.<span class="ruby-identifier">parse_json</span>(<span class="ruby-identifier">json</span>)
         <span class="ruby-keyword kw">return</span> <span class="ruby-constant">JSON</span>.<span class="ruby-identifier">parse</span>(<span class="ruby-identifier">json</span>)
       <span class="ruby-keyword kw">end</span>
@@ -192,11 +193,11 @@ Ruby resource hash. Simply invokes the JSON parser.
         </div>
       </div>
-      <div id="method-M000075" class="method-detail">
-        <a name="M000075"></a>
+      <div id="method-M000078" class="method-detail">
+        <a name="M000078"></a>
         <div class="method-heading">
-          <a href="#M000075" class="method-signature">
+          <a href="#M000078" class="method-signature">
           <span class="method-name">parse_ntriples</span><span class="method-args">(ntriples, base_uri)</span>
           </a>
         </div>
@@ -209,10 +210,10 @@ Parse a string containing N-Triples into a resource hash
  ntriples:: a String containing N-Triples
 </pre>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000075-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000075-source">
+            onclick="toggleCode('M000078-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000078-source">
 <pre>
-<span class="ruby-comment cmt"># File lib/pho/converter.rb, line 32</span>
+<span class="ruby-comment cmt"># File lib/pho/converter.rb, line 37</span>
       <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Converter</span>.<span class="ruby-identifier">parse_ntriples</span>(<span class="ruby-identifier">ntriples</span>, <span class="ruby-identifier">base_uri</span>)
         <span class="ruby-keyword kw">return</span> <span class="ruby-constant">Converter</span>.<span class="ruby-identifier">parse</span>(<span class="ruby-identifier">ntriples</span>, <span class="ruby-identifier">base_uri</span>, <span class="ruby-value str">&quot;ntriples&quot;</span>)
       <span class="ruby-keyword kw">end</span>
@@ -221,27 +222,28 @@ Parse a string containing N-Triples into a resource hash
         </div>
       </div>
-      <div id="method-M000074" class="method-detail">
-        <a name="M000074"></a>
+      <div id="method-M000077" class="method-detail">
+        <a name="M000077"></a>
         <div class="method-heading">
-          <a href="#M000074" class="method-signature">
+          <a href="#M000077" class="method-signature">
           <span class="method-name">parse_rdfxml</span><span class="method-args">(rdfxml, base_uri)</span>
           </a>
         </div>
         <div class="method-description">
           <p>
-Parse a string containing RDF/XML into a resource hash
+Parse a string containing <a href="../RDF.html">RDF</a>/XML into a resource
+hash
 </p>
 <pre>
  rdfxml: a String containing RDF/XML
 </pre>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000074-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000074-source">
+            onclick="toggleCode('M000077-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000077-source">
 <pre>
-<span class="ruby-comment cmt"># File lib/pho/converter.rb, line 25</span>
+<span class="ruby-comment cmt"># File lib/pho/converter.rb, line 30</span>
       <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Converter</span>.<span class="ruby-identifier">parse_rdfxml</span>(<span class="ruby-identifier">rdfxml</span>, <span class="ruby-identifier">base_uri</span>)
         <span class="ruby-keyword kw">return</span> <span class="ruby-constant">Converter</span>.<span class="ruby-identifier">parse</span>(<span class="ruby-identifier">rdfxml</span>, <span class="ruby-identifier">base_uri</span>, <span class="ruby-value str">&quot;rdfxml&quot;</span>)
       <span class="ruby-keyword kw">end</span>
@@ -250,11 +252,11 @@ Parse a string containing RDF/XML into a resource hash
         </div>
       </div>
-      <div id="method-M000076" class="method-detail">
-        <a name="M000076"></a>
+      <div id="method-M000079" class="method-detail">
+        <a name="M000079"></a>
         <div class="method-heading">
-          <a href="#M000076" class="method-signature">
+          <a href="#M000079" class="method-signature">
           <span class="method-name">parse_turtle</span><span class="method-args">(turtle, base_uri)</span>
           </a>
         </div>
@@ -267,10 +269,10 @@ Parse a string containing Turtle into a resource hash
  ntriples:: a String containing Turtle
 </pre>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000076-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000076-source">
+            onclick="toggleCode('M000079-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000079-source">
 <pre>
-<span class="ruby-comment cmt"># File lib/pho/converter.rb, line 39</span>
+<span class="ruby-comment cmt"># File lib/pho/converter.rb, line 44</span>
       <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Converter</span>.<span class="ruby-identifier">parse_turtle</span>(<span class="ruby-identifier">turtle</span>, <span class="ruby-identifier">base_uri</span>)
         <span class="ruby-keyword kw">return</span> <span class="ruby-constant">Converter</span>.<span class="ruby-identifier">parse</span>(<span class="ruby-identifier">turtle</span>, <span class="ruby-identifier">base_uri</span>, <span class="ruby-value str">&quot;turtle&quot;</span>)
       <span class="ruby-keyword kw">end</span>
@@ -279,27 +281,27 @@ Parse a string containing Turtle into a resource hash
         </div>
       </div>
-      <div id="method-M000078" class="method-detail">
-        <a name="M000078"></a>
+      <div id="method-M000081" class="method-detail">
+        <a name="M000081"></a>
         <div class="method-heading">
-          <a href="#M000078" class="method-signature">
+          <a href="#M000081" class="method-signature">
           <span class="method-name">serialize_json</span><span class="method-args">(hash)</span>
           </a>
         </div>
         <div class="method-description">
           <p>
-Serialize a resource hash as RDF-in-JSON
+Serialize a resource hash as <a href="../RDF.html">RDF</a>-in-JSON
 </p>
 <pre>
  hash:: the resource hash to serialize
 </pre>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000078-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000078-source">
+            onclick="toggleCode('M000081-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000081-source">
 <pre>
-<span class="ruby-comment cmt"># File lib/pho/converter.rb, line 66</span>
+<span class="ruby-comment cmt"># File lib/pho/converter.rb, line 71</span>
       <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Converter</span>.<span class="ruby-identifier">serialize_json</span>(<span class="ruby-identifier">hash</span>)
           <span class="ruby-keyword kw">return</span> <span class="ruby-constant">JSON</span>.<span class="ruby-identifier">dump</span>(<span class="ruby-identifier">hash</span>)
       <span class="ruby-keyword kw">end</span>