pho 0.5 → 0.6

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Files changed (80) hide show
  1. data/CHANGES +17 -0
  2. data/Rakefile +10 -2
  3. data/bin/talis_store +37 -92
  4. data/doc/rdoc/classes/Pho.html +11 -0
  5. data/doc/rdoc/classes/Pho/CommandLine.html +508 -0
  6. data/doc/rdoc/classes/Pho/DatatypeProperty.html +15 -15
  7. data/doc/rdoc/classes/Pho/Enrichment.html +1 -1
  8. data/doc/rdoc/classes/Pho/Enrichment/{ResourceEnricher.html → StoreEnricher.html} +158 -58
  9. data/doc/rdoc/classes/Pho/Etags.html +36 -36
  10. data/doc/rdoc/classes/Pho/Facet/Results.html +19 -19
  11. data/doc/rdoc/classes/Pho/Facet/Term.html +6 -6
  12. data/doc/rdoc/classes/Pho/FieldPredicateMap.html +94 -94
  13. data/doc/rdoc/classes/Pho/FieldWeighting.html +14 -14
  14. data/doc/rdoc/classes/Pho/FileManagement/AbstractFileManager.html +126 -91
  15. data/doc/rdoc/classes/Pho/FileManagement/FileManager.html +68 -62
  16. data/doc/rdoc/classes/Pho/FileManagement/RDFManager.html +22 -57
  17. data/doc/rdoc/classes/Pho/Job.html +68 -67
  18. data/doc/rdoc/classes/Pho/Jobs.html +62 -62
  19. data/doc/rdoc/classes/Pho/QueryProfile.html +64 -64
  20. data/doc/rdoc/classes/Pho/RDF.html +120 -0
  21. data/doc/rdoc/classes/Pho/RDF/Parser.html +277 -0
  22. data/doc/rdoc/classes/Pho/ResourceHash.html +1 -1
  23. data/doc/rdoc/classes/Pho/ResourceHash/Converter.html +48 -46
  24. data/doc/rdoc/classes/Pho/ResourceHash/SetAlgebra.html +15 -14
  25. data/doc/rdoc/classes/Pho/Snapshot.html +36 -36
  26. data/doc/rdoc/classes/Pho/Sparql.html +50 -0
  27. data/doc/rdoc/classes/Pho/Sparql/SparqlClient.html +147 -68
  28. data/doc/rdoc/classes/Pho/Sparql/SparqlHelper.html +195 -114
  29. data/doc/rdoc/classes/Pho/Status.html +26 -26
  30. data/doc/rdoc/classes/Pho/Store.html +271 -264
  31. data/doc/rdoc/classes/Pho/StoreSparqlClient.html +183 -0
  32. data/doc/rdoc/classes/Pho/Update.html +1 -0
  33. data/doc/rdoc/classes/Pho/Update/Changeset.html +69 -68
  34. data/doc/rdoc/classes/Pho/Update/ChangesetBuilder.html +24 -24
  35. data/doc/rdoc/classes/Pho/Update/Changesets.html +15 -14
  36. data/doc/rdoc/classes/Pho/Update/LiteralStatement.html +18 -18
  37. data/doc/rdoc/classes/Pho/Update/ResourceStatement.html +24 -24
  38. data/doc/rdoc/classes/Pho/Update/Statement.html +28 -27
  39. data/doc/rdoc/classes/String.html +1 -1
  40. data/doc/rdoc/created.rid +1 -1
  41. data/doc/rdoc/files/CHANGES.html +53 -1
  42. data/doc/rdoc/files/lib/pho/changeset_rb.html +1 -1
  43. data/doc/rdoc/files/lib/pho/command_line_rb.html +101 -0
  44. data/doc/rdoc/files/lib/pho/converter_rb.html +1 -1
  45. data/doc/rdoc/files/lib/pho/enrichment_rb.html +1 -1
  46. data/doc/rdoc/files/lib/pho/file_management_rb.html +1 -1
  47. data/doc/rdoc/files/lib/pho/file_manager_rb.html +1 -1
  48. data/doc/rdoc/files/lib/pho/rdf_collection_rb.html +1 -1
  49. data/doc/rdoc/files/lib/pho/rdf_rb.html +108 -0
  50. data/doc/rdoc/files/lib/pho/sparql_rb.html +1 -1
  51. data/doc/rdoc/files/lib/pho/store_rb.html +8 -1
  52. data/doc/rdoc/files/lib/pho_rb.html +4 -2
  53. data/doc/rdoc/fr_class_index.html +6 -1
  54. data/doc/rdoc/fr_file_index.html +2 -0
  55. data/doc/rdoc/fr_method_index.html +192 -172
  56. data/examples/calais/bio.txt +7 -0
  57. data/examples/calais/dump.rb +17 -0
  58. data/examples/calais/enlighten.rb +23 -0
  59. data/examples/calais/output.rdf +25 -0
  60. data/examples/sinatra/viewer.rb +20 -0
  61. data/lib/pho.rb +4 -1
  62. data/lib/pho/changeset.rb +17 -1
  63. data/lib/pho/command_line.rb +166 -0
  64. data/lib/pho/converter.rb +8 -3
  65. data/lib/pho/enrichment.rb +93 -28
  66. data/lib/pho/file_management.rb +32 -19
  67. data/lib/pho/file_manager.rb +22 -26
  68. data/lib/pho/rdf.rb +74 -0
  69. data/lib/pho/rdf_collection.rb +2 -17
  70. data/lib/pho/sparql.rb +150 -38
  71. data/lib/pho/store.rb +28 -2
  72. data/tests/tc_contentbox.rb +41 -0
  73. data/tests/tc_enrichment.rb +41 -4
  74. data/tests/tc_file_manager.rb +97 -7
  75. data/tests/tc_rdf_collection.rb +25 -13
  76. data/tests/tc_rdf_parser.rb +37 -0
  77. data/tests/tc_sparql.rb +72 -2
  78. data/tests/tc_sparql_helper.rb +16 -0
  79. data/tests/ts_pho.rb +2 -1
  80. metadata +20 -3
@@ -0,0 +1,183 @@
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <title>Class: Pho::StoreSparqlClient</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <meta http-equiv="Content-Script-Type" content="text/javascript" />
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+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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+ <script type="text/javascript">
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+ // <![CDATA[
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+
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+ function popupCode( url ) {
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+ window.open(url, "Code", "resizable=yes,scrollbars=yes,toolbar=no,status=no,height=150,width=400")
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+ }
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+
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+ function toggleCode( id ) {
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+ if ( document.getElementById )
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+ elem = document.getElementById( id );
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+ else if ( document.all )
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+ elem = eval( "document.all." + id );
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+ else
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+ return false;
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+
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+ elemStyle = elem.style;
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+
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+ if ( elemStyle.display != "block" ) {
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+ elemStyle.display = "block"
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+ } else {
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+ elemStyle.display = "none"
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+ }
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+
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+ return true;
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+ }
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+
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+ // Make codeblocks hidden by default
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+ document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }</style>" )
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+
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+ // ]]>
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+ </script>
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+
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+ </head>
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+ <body>
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+
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+
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+
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+ <div id="classHeader">
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+ <table class="header-table">
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+ <tr class="top-aligned-row">
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+ <td><strong>Class</strong></td>
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+ <td class="class-name-in-header">Pho::StoreSparqlClient</td>
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+ </tr>
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+ <tr class="top-aligned-row">
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+ <td><strong>In:</strong></td>
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+ <td>
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+ <a href="../../files/lib/pho/store_rb.html">
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+ lib/pho/store.rb
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+ </a>
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+ <br />
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+ </td>
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+ </tr>
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+
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+ <tr class="top-aligned-row">
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+ <td><strong>Parent:</strong></td>
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+ <td>
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+ <a href="Sparql/SparqlClient.html">
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+ Pho::Sparql::SparqlClient
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+ </a>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+ <!-- banner header -->
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+
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+ <div id="bodyContent">
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+
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+
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+
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+ <div id="contextContent">
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+
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+
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+
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+ </div>
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+
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+ <div id="method-list">
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+ <h3 class="section-bar">Methods</h3>
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+
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+ <div class="name-list">
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+ <a href="#M000141">describe_uri</a>&nbsp;&nbsp;
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+ <a href="#M000140">new</a>&nbsp;&nbsp;
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+ </div>
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+ </div>
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+
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+ </div>
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+
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+
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+ <!-- if includes -->
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+
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+ <div id="section">
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+
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+
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+
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+
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+
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+
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+
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+
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+ <!-- if method_list -->
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+ <div id="methods">
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+ <h3 class="section-bar">Public Class methods</h3>
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+
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+ <div id="method-M000140" class="method-detail">
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+ <a name="M000140"></a>
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+
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+ <div class="method-heading">
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+ <a href="#M000140" class="method-signature">
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+ <span class="method-name">new</span><span class="method-args">(store, endpoint, client=HTTPClient.new() )</span>
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+ </a>
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+ </div>
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+
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+ <div class="method-description">
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+ <p><a class="source-toggle" href="#"
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+ onclick="toggleCode('M000140-source');return false;">[Source]</a></p>
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+ <div class="method-source-code" id="M000140-source">
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+ <pre>
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+ <span class="ruby-comment cmt"># File lib/pho/store.rb, line 484</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">store</span>, <span class="ruby-identifier">endpoint</span>, <span class="ruby-identifier">client</span>=<span class="ruby-constant">HTTPClient</span>.<span class="ruby-identifier">new</span>() )
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+ <span class="ruby-keyword kw">super</span>(<span class="ruby-identifier">endpoint</span>, <span class="ruby-identifier">client</span>)
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+ <span class="ruby-ivar">@store</span> = <span class="ruby-identifier">store</span>
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+ <span class="ruby-keyword kw">end</span>
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+ </pre>
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+ </div>
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+ </div>
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+ </div>
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+
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+ <h3 class="section-bar">Public Instance methods</h3>
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+
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+ <div id="method-M000141" class="method-detail">
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+ <a name="M000141"></a>
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+
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+ <div class="method-heading">
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+ <a href="#M000141" class="method-signature">
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+ <span class="method-name">describe_uri</span><span class="method-args">(uri, format=&quot;application/rdf+xml&quot;, type=:cbd)</span>
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+ </a>
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+ </div>
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+
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+ <div class="method-description">
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+ <p>
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+ Override default behaviour to use the Stores Describe service instead when
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+ requesting CBDs
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+ </p>
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+ <p><a class="source-toggle" href="#"
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+ onclick="toggleCode('M000141-source');return false;">[Source]</a></p>
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+ <div class="method-source-code" id="M000141-source">
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+ <pre>
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+ <span class="ruby-comment cmt"># File lib/pho/store.rb, line 491</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">describe_uri</span>(<span class="ruby-identifier">uri</span>, <span class="ruby-identifier">format</span>=<span class="ruby-value str">&quot;application/rdf+xml&quot;</span>, <span class="ruby-identifier">type</span>=<span class="ruby-identifier">:cbd</span>)
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+ <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">type</span> <span class="ruby-operator">==</span> <span class="ruby-identifier">:cbd</span>
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+ <span class="ruby-keyword kw">return</span> <span class="ruby-ivar">@store</span>.<span class="ruby-identifier">describe</span>(<span class="ruby-identifier">uri</span>, <span class="ruby-identifier">format</span>)
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+ <span class="ruby-keyword kw">else</span>
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+ <span class="ruby-keyword kw">return</span> <span class="ruby-keyword kw">super</span>
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+ <span class="ruby-keyword kw">end</span>
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+ <span class="ruby-keyword kw">end</span>
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+ </pre>
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+ </div>
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+ </div>
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+ </div>
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+
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+ </div>
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+
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+ </div>
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+
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+
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+ <div id="validator-badges">
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+ <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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+ </div>
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+
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+ </body>
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+ </html>
@@ -100,6 +100,7 @@ href="Update/Changeset.html">Changeset</a> handling.
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  Class <a href="Update/Changeset.html" class="link">Pho::Update::Changeset</a><br />
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  Class <a href="Update/ChangesetBuilder.html" class="link">Pho::Update::ChangesetBuilder</a><br />
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+ Class <a href="Update/ChangesetHelper.html" class="link">Pho::Update::ChangesetHelper</a><br />
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  Class <a href="Update/Changesets.html" class="link">Pho::Update::Changesets</a><br />
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  Class <a href="Update/LiteralStatement.html" class="link">Pho::Update::LiteralStatement</a><br />
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  Class <a href="Update/ResourceStatement.html" class="link">Pho::Update::ResourceStatement</a><br />
@@ -80,11 +80,12 @@
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  <div id="description">
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  <p>
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- Models a <a href="Changeset.html">Changeset</a>: a delta to an RDF graph
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+ Models a <a href="Changeset.html">Changeset</a>: a delta to an <a
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+ href="../RDF.html">RDF</a> graph
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  </p>
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  <p>
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- The RDF Schema for <a href="Changesets.html">Changesets</a> can be found
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- at:
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+ href="Changesets.html">Changesets</a> can be found at:
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  </p>
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  <pre>
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  http://vocab.org/changeset/schema
@@ -118,16 +119,16 @@ Processing of batch changesets is described at:
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  <h3 class="section-bar">Methods</h3>
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- <a href="#M000059">add_addition</a>&nbsp;&nbsp;
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- <a href="#M000060">add_additions</a>&nbsp;&nbsp;
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- <a href="#M000062">add_removal</a>&nbsp;&nbsp;
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- <a href="#M000063">add_removals</a>&nbsp;&nbsp;
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- <a href="#M000058">additions</a>&nbsp;&nbsp;
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- <a href="#M000055">new</a>&nbsp;&nbsp;
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- <a href="#M000061">removals</a>&nbsp;&nbsp;
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- <a href="#M000064">submit</a>&nbsp;&nbsp;
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- <a href="#M000057">to_rdf</a>&nbsp;&nbsp;
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- <a href="#M000056">to_s</a>&nbsp;&nbsp;
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+ <a href="#M000062">add_addition</a>&nbsp;&nbsp;
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+ <a href="#M000063">add_additions</a>&nbsp;&nbsp;
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+ <a href="#M000065">add_removal</a>&nbsp;&nbsp;
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+ <a href="#M000066">add_removals</a>&nbsp;&nbsp;
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+ <a href="#M000061">additions</a>&nbsp;&nbsp;
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+ <a href="#M000058">new</a>&nbsp;&nbsp;
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+ <a href="#M000064">removals</a>&nbsp;&nbsp;
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+ <a href="#M000067">submit</a>&nbsp;&nbsp;
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+ <a href="#M000060">to_rdf</a>&nbsp;&nbsp;
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+ <a href="#M000059">to_s</a>&nbsp;&nbsp;
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+ <a name="M000058"></a>
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  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">subject_of_change</span>, <span class="ruby-identifier">creator_name</span>=<span class="ruby-keyword kw">nil</span>, <span class="ruby-identifier">change_reason</span>=<span class="ruby-keyword kw">nil</span>)
@@ -224,11 +225,11 @@ Constructor. Parameter should be the URI of the subject of change
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  <span class="ruby-comment cmt"># File lib/pho/changeset.rb, line 280</span>
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  <span class="ruby-comment cmt"># File lib/pho/changeset.rb, line 288</span>
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@@ -298,8 +299,8 @@ Include a <a href="Statement.html">Statement</a> in the <a
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  <span class="ruby-comment cmt"># File lib/pho/changeset.rb, line 300</span>
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  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">add_removal</span>(<span class="ruby-identifier">statement</span>)
@@ -313,22 +314,22 @@ href="Changeset.html">Changeset</a> as a removal
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  </div>
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  <div class="method-heading">
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  <span class="method-name">add_removals</span><span class="method-args">(statements)</span>
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  </a>
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  <div class="method-description">
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  <p>
327
- Add an array of statements as <a href="Changeset.html#M000061">removals</a>
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+ Add an array of statements as <a href="Changeset.html#M000064">removals</a>
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  </p>
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- onclick="toggleCode('M000063-source');return false;">[Source]</a></p>
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+ onclick="toggleCode('M000066-source');return false;">[Source]</a></p>
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  <pre>
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  <span class="ruby-comment cmt"># File lib/pho/changeset.rb, line 308</span>
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  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">add_removals</span>(<span class="ruby-identifier">statements</span>)
@@ -341,11 +342,11 @@ Add an array of statements as <a href="Changeset.html#M000061">removals</a>
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  </div>
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  </div>
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+ <div id="method-M000061" class="method-detail">
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  <div class="method-heading">
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+ <a href="#M000061" class="method-signature">
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  <span class="method-name">additions</span><span class="method-args">()</span>
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  </a>
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  </div>
@@ -356,8 +357,8 @@ Return the <a href="Statement.html">Statement</a> describing the addition
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  in this <a href="Changeset.html">Changeset</a>
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  </p>
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  <pre>
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  <span class="ruby-comment cmt"># File lib/pho/changeset.rb, line 275</span>
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  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">additions</span>()
@@ -368,11 +369,11 @@ in this <a href="Changeset.html">Changeset</a>
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  </div>
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  </div>
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+ <div id="method-M000064" class="method-detail">
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+ <a name="M000064"></a>
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  <div class="method-heading">
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+ <a href="#M000064" class="method-signature">
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  <span class="method-name">removals</span><span class="method-args">()</span>
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  </a>
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  </div>
@@ -380,12 +381,12 @@ in this <a href="Changeset.html">Changeset</a>
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  <div class="method-description">
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  <p>
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  Return the list of Statements describing the <a
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- href="Changeset.html#M000061">removals</a> in this <a
384
+ href="Changeset.html#M000064">removals</a> in this <a
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  href="Changeset.html">Changeset</a>
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386
  </p>
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  <p><a class="source-toggle" href="#"
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- onclick="toggleCode('M000061-source');return false;">[Source]</a></p>
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+ onclick="toggleCode('M000064-source');return false;">[Source]</a></p>
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+ <div class="method-source-code" id="M000064-source">
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  <pre>
390
391
  <span class="ruby-comment cmt"># File lib/pho/changeset.rb, line 295</span>
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  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">removals</span>()
@@ -396,11 +397,11 @@ href="Changeset.html">Changeset</a>
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  </div>
397
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  </div>
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- <div id="method-M000064" class="method-detail">
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- <a name="M000064"></a>
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+ <div id="method-M000067" class="method-detail">
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+ <a name="M000067"></a>
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403
  <div class="method-heading">
403
- <a href="#M000064" class="method-signature">
404
+ <a href="#M000067" class="method-signature">
404
405
  <span class="method-name">submit</span><span class="method-args">(store, versioned=false)</span>
405
406
  </a>
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407
  </div>
@@ -413,8 +414,8 @@ Submit this changeset to the specified store
413
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  store:: the store to which the changeset should be applied
414
415
  </pre>
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416
  <p><a class="source-toggle" href="#"
416
- onclick="toggleCode('M000064-source');return false;">[Source]</a></p>
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- <div class="method-source-code" id="M000064-source">
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+ onclick="toggleCode('M000067-source');return false;">[Source]</a></p>
418
+ <div class="method-source-code" id="M000067-source">
418
419
  <pre>
419
420
  <span class="ruby-comment cmt"># File lib/pho/changeset.rb, line 317</span>
420
421
  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">submit</span>(<span class="ruby-identifier">store</span>, <span class="ruby-identifier">versioned</span>=<span class="ruby-keyword kw">false</span>)
@@ -425,23 +426,23 @@ Submit this changeset to the specified store
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426
  </div>
426
427
  </div>
427
428
 
428
- <div id="method-M000057" class="method-detail">
429
- <a name="M000057"></a>
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+ <div id="method-M000060" class="method-detail">
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+ <a name="M000060"></a>
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431
 
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432
  <div class="method-heading">
432
- <a href="#M000057" class="method-signature">
433
+ <a href="#M000060" class="method-signature">
433
434
  <span class="method-name">to_rdf</span><span class="method-args">(include_root=true)</span>
434
435
  </a>
435
436
  </div>
436
437
 
437
438
  <div class="method-description">
438
439
  <p>
439
- Serialize this changeset as RDF/XML suitable for submitting to the
440
- Platform.
440
+ Serialize this changeset as <a href="../RDF.html">RDF</a>/XML suitable for
441
+ submitting to the Platform.
441
442
  </p>
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443
  <p><a class="source-toggle" href="#"
443
- onclick="toggleCode('M000057-source');return false;">[Source]</a></p>
444
- <div class="method-source-code" id="M000057-source">
444
+ onclick="toggleCode('M000060-source');return false;">[Source]</a></p>
445
+ <div class="method-source-code" id="M000060-source">
445
446
  <pre>
446
447
  <span class="ruby-comment cmt"># File lib/pho/changeset.rb, line 240</span>
447
448
  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">to_rdf</span>(<span class="ruby-identifier">include_root</span>=<span class="ruby-keyword kw">true</span>)
@@ -482,19 +483,19 @@ Platform.
482
483
  </div>
483
484
  </div>
484
485
 
485
- <div id="method-M000056" class="method-detail">
486
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486
+ <div id="method-M000059" class="method-detail">
487
+ <a name="M000059"></a>
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489
  <div class="method-heading">
489
- <a href="#M000056" class="method-signature">
490
+ <a href="#M000059" class="method-signature">
490
491
  <span class="method-name">to_s</span><span class="method-args">()</span>
491
492
  </a>
492
493
  </div>
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494
 
494
495
  <div class="method-description">
495
496
  <p><a class="source-toggle" href="#"
496
- onclick="toggleCode('M000056-source');return false;">[Source]</a></p>
497
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497
+ onclick="toggleCode('M000059-source');return false;">[Source]</a></p>
498
+ <div class="method-source-code" id="M000059-source">
498
499
  <pre>
499
500
  <span class="ruby-comment cmt"># File lib/pho/changeset.rb, line 235</span>
500
501
  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">to_s</span>