pho 0.5 → 0.6

data/doc/rdoc/classes/Pho/FileManagement/FileManager.html

@@ -88,10 +88,10 @@
       <h3 class="section-bar">Methods</h3>
 
       <div class="name-list">
-      <a href="#M000035">list</a>&nbsp;&nbsp;
-      <a href="#M000034">new</a>&nbsp;&nbsp;
-      <a href="#M000036">new_files</a>&nbsp;&nbsp;
-      <a href="#M000037">store_file</a>&nbsp;&nbsp;
+      <a href="#M000037">list</a>&nbsp;&nbsp;
+      <a href="#M000038">name_for_file</a>&nbsp;&nbsp;
+      <a href="#M000036">new</a>&nbsp;&nbsp;
+      <a href="#M000039">store_file</a>&nbsp;&nbsp;
       </div>
     </div>
 
@@ -106,6 +106,19 @@
 
 
 
+    <div id="attribute-list">
+      <h3 class="section-bar">Attributes</h3>
+
+      <div class="name-list">
+        <table>
+        <tr class="top-aligned-row context-row">
+          <td class="context-item-name">base</td>
+          <td class="context-item-value">&nbsp;[R]&nbsp;</td>
+          <td class="context-item-desc"></td>
+        </tr>
+        </table>
+      </div>
+    </div>
       
 
 
@@ -113,96 +126,88 @@
     <div id="methods">
       <h3 class="section-bar">Public Class methods</h3>
 
-      <div id="method-M000034" class="method-detail">
-        <a name="M000034"></a>
+      <div id="method-M000038" class="method-detail">
+        <a name="M000038"></a>
 
         <div class="method-heading">
-          <a href="#M000034" class="method-signature">
-          <span class="method-name">new</span><span class="method-args">(store, dir, ok_suffix=OK, fail_suffix=FAIL, sleep=1)</span>
+          <a href="#M000038" class="method-signature">
+          <span class="method-name">name_for_file</span><span class="method-args">(dir, file, base=nil)</span>
           </a>
         </div>
       
         <div class="method-description">
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000034-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000034-source">
+            onclick="toggleCode('M000038-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000038-source">
 <pre>
-<span class="ruby-comment cmt"># File lib/pho/file_manager.rb, line 9</span>
-      <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">store</span>, <span class="ruby-identifier">dir</span>, <span class="ruby-identifier">ok_suffix</span>=<span class="ruby-constant">OK</span>, <span class="ruby-identifier">fail_suffix</span>=<span class="ruby-constant">FAIL</span>, <span class="ruby-identifier">sleep</span>=<span class="ruby-value">1</span>)
-        <span class="ruby-keyword kw">super</span>(<span class="ruby-identifier">store</span>, <span class="ruby-identifier">dir</span>, <span class="ruby-identifier">ok_suffix</span>, <span class="ruby-identifier">fail_suffix</span>, <span class="ruby-identifier">sleep</span>)
+<span class="ruby-comment cmt"># File lib/pho/file_manager.rb, line 32</span>
+      <span class="ruby-keyword kw">def</span> <span class="ruby-constant">FileManager</span>.<span class="ruby-identifier">name_for_file</span>(<span class="ruby-identifier">dir</span>, <span class="ruby-identifier">file</span>, <span class="ruby-identifier">base</span>=<span class="ruby-keyword kw">nil</span>)
+        <span class="ruby-identifier">uri</span> = <span class="ruby-identifier">file</span>.<span class="ruby-identifier">path</span>.<span class="ruby-identifier">gsub</span>(<span class="ruby-identifier">dir</span>, <span class="ruby-value str">&quot;&quot;</span>)
+        <span class="ruby-identifier">uri</span> = <span class="ruby-node">&quot;#{base}#{uri}&quot;</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">base</span> <span class="ruby-operator">!=</span> <span class="ruby-keyword kw">nil</span>
+        <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">uri</span>
       <span class="ruby-keyword kw">end</span>
 </pre>
           </div>
         </div>
       </div>
 
-      <h3 class="section-bar">Public Instance methods</h3>
-
-      <div id="method-M000035" class="method-detail">
-        <a name="M000035"></a>
+      <div id="method-M000036" class="method-detail">
+        <a name="M000036"></a>
 
         <div class="method-heading">
-          <a href="#M000035" class="method-signature">
-          <span class="method-name">list</span><span class="method-args">()</span>
+          <a href="#M000036" class="method-signature">
+          <span class="method-name">new</span><span class="method-args">(store, dir, base = nil, ok_suffix=OK, fail_suffix=FAIL, sleep=1)</span>
           </a>
         </div>
       
         <div class="method-description">
-          <p>
-List files being managed, i.e. everything not .ok or .fail
-</p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000035-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000035-source">
+            onclick="toggleCode('M000036-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000036-source">
 <pre>
-<span class="ruby-comment cmt"># File lib/pho/file_manager.rb, line 14</span>
-      <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">list</span>()          
-          <span class="ruby-identifier">files</span> = []
-          <span class="ruby-constant">Dir</span>.<span class="ruby-identifier">glob</span>( <span class="ruby-constant">File</span>.<span class="ruby-identifier">join</span>(<span class="ruby-ivar">@dir</span>, <span class="ruby-value str">&quot;*&quot;</span>) ) <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">file</span><span class="ruby-operator">|</span>
-            <span class="ruby-keyword kw">if</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">extname</span>(<span class="ruby-identifier">file</span>) <span class="ruby-operator">!=</span> <span class="ruby-node">&quot;.#{@ok_suffix}&quot;</span> <span class="ruby-operator">&amp;&amp;</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">extname</span>(<span class="ruby-identifier">file</span>) <span class="ruby-operator">!=</span> <span class="ruby-node">&quot;.#{@fail_suffix}&quot;</span> 
-              <span class="ruby-identifier">files</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-identifier">file</span>
-            <span class="ruby-keyword kw">end</span>
-          <span class="ruby-keyword kw">end</span>  
-          <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">files</span>
+<span class="ruby-comment cmt"># File lib/pho/file_manager.rb, line 11</span>
+      <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">store</span>, <span class="ruby-identifier">dir</span>, <span class="ruby-identifier">base</span> = <span class="ruby-keyword kw">nil</span>, <span class="ruby-identifier">ok_suffix</span>=<span class="ruby-constant">OK</span>, <span class="ruby-identifier">fail_suffix</span>=<span class="ruby-constant">FAIL</span>, <span class="ruby-identifier">sleep</span>=<span class="ruby-value">1</span>)
+        <span class="ruby-keyword kw">super</span>(<span class="ruby-identifier">store</span>, <span class="ruby-identifier">dir</span>, <span class="ruby-identifier">ok_suffix</span>, <span class="ruby-identifier">fail_suffix</span>, <span class="ruby-identifier">sleep</span>)
+        <span class="ruby-ivar">@base</span> = <span class="ruby-identifier">base</span>
       <span class="ruby-keyword kw">end</span>
 </pre>
           </div>
         </div>
       </div>
 
-      <div id="method-M000036" class="method-detail">
-        <a name="M000036"></a>
+      <h3 class="section-bar">Public Instance methods</h3>
+
+      <div id="method-M000037" class="method-detail">
+        <a name="M000037"></a>
 
         <div class="method-heading">
-          <a href="#M000036" class="method-signature">
-          <span class="method-name">new_files</span><span class="method-args">()</span>
+          <a href="#M000037" class="method-signature">
+          <span class="method-name">list</span><span class="method-args">(recursive=false)</span>
           </a>
         </div>
       
         <div class="method-description">
           <p>
-List any <a href="FileManager.html#M000034">new</a> files in the directory
+List files being managed, i.e. everything not .ok or .fail
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000036-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000036-source">
+            onclick="toggleCode('M000037-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000037-source">
 <pre>
-<span class="ruby-comment cmt"># File lib/pho/file_manager.rb, line 25</span>
-      <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">new_files</span>()
-        <span class="ruby-identifier">newfiles</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>
-        <span class="ruby-constant">Dir</span>.<span class="ruby-identifier">glob</span>( <span class="ruby-constant">File</span>.<span class="ruby-identifier">join</span>(<span class="ruby-ivar">@dir</span>, <span class="ruby-value str">&quot;*&quot;</span>) ) <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">file</span><span class="ruby-operator">|</span>
-          
-          <span class="ruby-keyword kw">if</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">extname</span>(<span class="ruby-identifier">file</span>) <span class="ruby-operator">!=</span> <span class="ruby-node">&quot;.#{@ok_suffix}&quot;</span> <span class="ruby-operator">&amp;&amp;</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">extname</span>(<span class="ruby-identifier">file</span>) <span class="ruby-operator">!=</span> <span class="ruby-node">&quot;.#{@fail_suffix}&quot;</span> 
-            <span class="ruby-identifier">ok_file</span> = <span class="ruby-identifier">get_ok_file_for</span>(<span class="ruby-identifier">file</span>)
-            <span class="ruby-identifier">fail_file</span> = <span class="ruby-identifier">get_fail_file_for</span>(<span class="ruby-identifier">file</span>)
-            <span class="ruby-keyword kw">if</span> <span class="ruby-operator">!</span>( <span class="ruby-constant">File</span>.<span class="ruby-identifier">exists?</span>(<span class="ruby-identifier">ok_file</span>) <span class="ruby-keyword kw">or</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">exists?</span>(<span class="ruby-identifier">fail_file</span>) )
-              <span class="ruby-identifier">newfiles</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-identifier">file</span>          
-            <span class="ruby-keyword kw">end</span>
-            
+<span class="ruby-comment cmt"># File lib/pho/file_manager.rb, line 17</span>
+      <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">list</span>(<span class="ruby-identifier">recursive</span>=<span class="ruby-keyword kw">false</span>)          
+          <span class="ruby-identifier">files</span> = []
+          <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">recursive</span>
+            <span class="ruby-identifier">pattern</span> = <span class="ruby-value str">&quot;**/*&quot;</span>
+          <span class="ruby-keyword kw">else</span>
+            <span class="ruby-identifier">pattern</span> = <span class="ruby-value str">&quot;*&quot;</span>
           <span class="ruby-keyword kw">end</span>
-          
-        <span class="ruby-keyword kw">end</span>
-        <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">newfiles</span>
+          <span class="ruby-constant">Dir</span>.<span class="ruby-identifier">glob</span>( <span class="ruby-constant">File</span>.<span class="ruby-identifier">join</span>(<span class="ruby-ivar">@dir</span>, <span class="ruby-identifier">pattern</span>) ) <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">file</span><span class="ruby-operator">|</span>
+            <span class="ruby-keyword kw">if</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">extname</span>(<span class="ruby-identifier">file</span>) <span class="ruby-operator">!=</span> <span class="ruby-node">&quot;.#{@ok_suffix}&quot;</span> <span class="ruby-operator">&amp;&amp;</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">extname</span>(<span class="ruby-identifier">file</span>) <span class="ruby-operator">!=</span> <span class="ruby-node">&quot;.#{@fail_suffix}&quot;</span> <span class="ruby-operator">&amp;&amp;</span> <span class="ruby-operator">!</span><span class="ruby-constant">File</span>.<span class="ruby-identifier">directory?</span>(<span class="ruby-identifier">file</span>)
+              <span class="ruby-identifier">files</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-identifier">file</span>
+            <span class="ruby-keyword kw">end</span>
+          <span class="ruby-keyword kw">end</span>  
+          <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">files</span>
       <span class="ruby-keyword kw">end</span>
 </pre>
           </div>
@@ -211,23 +216,24 @@ List any <a href="FileManager.html#M000034">new</a> files in the directory
 
       <h3 class="section-bar">Protected Instance methods</h3>
 
-      <div id="method-M000037" class="method-detail">
-        <a name="M000037"></a>
+      <div id="method-M000039" class="method-detail">
+        <a name="M000039"></a>
 
         <div class="method-heading">
-          <a href="#M000037" class="method-signature">
+          <a href="#M000039" class="method-signature">
           <span class="method-name">store_file</span><span class="method-args">(file, filename)</span>
           </a>
         </div>
       
         <div class="method-description">
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000037-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000037-source">
+            onclick="toggleCode('M000039-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000039-source">
 <pre>
-<span class="ruby-comment cmt"># File lib/pho/file_manager.rb, line 45</span>
+<span class="ruby-comment cmt"># File lib/pho/file_manager.rb, line 40</span>
       <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">store_file</span>(<span class="ruby-identifier">file</span>, <span class="ruby-identifier">filename</span>)
-        <span class="ruby-identifier">response</span> = <span class="ruby-ivar">@store</span>.<span class="ruby-identifier">upload_item</span>(<span class="ruby-identifier">file</span>, <span class="ruby-constant">MIME</span><span class="ruby-operator">::</span><span class="ruby-constant">Types</span>.<span class="ruby-identifier">type_for</span>(<span class="ruby-identifier">filename</span>)[<span class="ruby-value">0</span>].<span class="ruby-identifier">to_s</span> )
+        <span class="ruby-identifier">uri</span> = <span class="ruby-constant">FileManager</span>.<span class="ruby-identifier">name_for_file</span>(<span class="ruby-ivar">@dir</span>, <span class="ruby-identifier">file</span>, <span class="ruby-ivar">@base</span>)
+        <span class="ruby-identifier">response</span> = <span class="ruby-ivar">@store</span>.<span class="ruby-identifier">upload_item</span>(<span class="ruby-identifier">file</span>, <span class="ruby-constant">MIME</span><span class="ruby-operator">::</span><span class="ruby-constant">Types</span>.<span class="ruby-identifier">type_for</span>(<span class="ruby-identifier">filename</span>)[<span class="ruby-value">0</span>].<span class="ruby-identifier">to_s</span>, <span class="ruby-identifier">uri</span> )
         <span class="ruby-keyword kw">if</span> (<span class="ruby-identifier">response</span>.<span class="ruby-identifier">status</span> <span class="ruby-operator">&lt;</span> <span class="ruby-value">300</span> )
           <span class="ruby-constant">File</span>.<span class="ruby-identifier">open</span>(<span class="ruby-identifier">get_ok_file_for</span>(<span class="ruby-identifier">filename</span>), <span class="ruby-value str">&quot;w&quot;</span>) <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">file</span><span class="ruby-operator">|</span>
             <span class="ruby-identifier">file</span>.<span class="ruby-identifier">print</span>( <span class="ruby-value str">&quot;OK&quot;</span> )            

data/doc/rdoc/classes/Pho/FileManagement/RDFManager.html

@@ -98,10 +98,9 @@ Allows a collection to be mirrored into the platform
       <h3 class="section-bar">Methods</h3>
 
       <div class="name-list">
-      <a href="#M000022">list</a>&nbsp;&nbsp;
-      <a href="#M000021">new</a>&nbsp;&nbsp;
-      <a href="#M000023">new_files</a>&nbsp;&nbsp;
-      <a href="#M000024">store_file</a>&nbsp;&nbsp;
+      <a href="#M000024">list</a>&nbsp;&nbsp;
+      <a href="#M000023">new</a>&nbsp;&nbsp;
+      <a href="#M000025">store_file</a>&nbsp;&nbsp;
       </div>
     </div>
 
@@ -136,19 +135,19 @@ Allows a collection to be mirrored into the platform
     <div id="methods">
       <h3 class="section-bar">Public Class methods</h3>
 
-      <div id="method-M000021" class="method-detail">
-        <a name="M000021"></a>
+      <div id="method-M000023" class="method-detail">
+        <a name="M000023"></a>
 
         <div class="method-heading">
-          <a href="#M000021" class="method-signature">
+          <a href="#M000023" class="method-signature">
           <span class="method-name">new</span><span class="method-args">(store, dir, rdf_suffix=RDF, ok_suffix=OK, fail_suffix=FAIL, sleep=1)</span>
           </a>
         </div>
       
         <div class="method-description">
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000021-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000021-source">
+            onclick="toggleCode('M000023-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000023-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 13</span>
         <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">store</span>, <span class="ruby-identifier">dir</span>, <span class="ruby-identifier">rdf_suffix</span>=<span class="ruby-constant">RDF</span>, <span class="ruby-identifier">ok_suffix</span>=<span class="ruby-constant">OK</span>, <span class="ruby-identifier">fail_suffix</span>=<span class="ruby-constant">FAIL</span>, <span class="ruby-identifier">sleep</span>=<span class="ruby-value">1</span>)
@@ -162,12 +161,12 @@ Allows a collection to be mirrored into the platform
 
       <h3 class="section-bar">Public Instance methods</h3>
 
-      <div id="method-M000022" class="method-detail">
-        <a name="M000022"></a>
+      <div id="method-M000024" class="method-detail">
+        <a name="M000024"></a>
 
         <div class="method-heading">
-          <a href="#M000022" class="method-signature">
-          <span class="method-name">list</span><span class="method-args">()</span>
+          <a href="#M000024" class="method-signature">
+          <span class="method-name">list</span><span class="method-args">(recursive=false)</span>
           </a>
         </div>
       
@@ -176,11 +175,11 @@ Allows a collection to be mirrored into the platform
 List files being managed
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000022-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000022-source">
+            onclick="toggleCode('M000024-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000024-source">
 <pre>
-<span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 20</span>
-        <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">list</span>()
+<span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 19</span>
+        <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">list</span>(<span class="ruby-identifier">recursive</span>=<span class="ruby-keyword kw">false</span>)
             <span class="ruby-keyword kw">return</span> <span class="ruby-constant">Dir</span>.<span class="ruby-identifier">glob</span>( <span class="ruby-constant">File</span>.<span class="ruby-identifier">join</span>(<span class="ruby-ivar">@dir</span>, <span class="ruby-node">&quot;*.#{@rdf_suffix}&quot;</span>) )  
         <span class="ruby-keyword kw">end</span>
 </pre>
@@ -188,57 +187,23 @@ List files being managed
         </div>
       </div>
 
-      <div id="method-M000023" class="method-detail">
-        <a name="M000023"></a>
-
-        <div class="method-heading">
-          <a href="#M000023" class="method-signature">
-          <span class="method-name">new_files</span><span class="method-args">()</span>
-          </a>
-        </div>
-      
-        <div class="method-description">
-          <p>
-List any <a href="RDFManager.html#M000021">new</a> files in the directory
-</p>
-          <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000023-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000023-source">
-<pre>
-<span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 25</span>
-        <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">new_files</span>()
-          <span class="ruby-identifier">newfiles</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>
-          <span class="ruby-constant">Dir</span>.<span class="ruby-identifier">glob</span>( <span class="ruby-constant">File</span>.<span class="ruby-identifier">join</span>(<span class="ruby-ivar">@dir</span>, <span class="ruby-node">&quot;*.#{@rdf_suffix}&quot;</span>) ) <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">file</span><span class="ruby-operator">|</span>
-            <span class="ruby-identifier">ok_file</span> = <span class="ruby-identifier">get_ok_file_for</span>(<span class="ruby-identifier">file</span>)
-            <span class="ruby-identifier">fail_file</span> = <span class="ruby-identifier">get_fail_file_for</span>(<span class="ruby-identifier">file</span>)
-            <span class="ruby-keyword kw">if</span> <span class="ruby-operator">!</span>( <span class="ruby-constant">File</span>.<span class="ruby-identifier">exists?</span>(<span class="ruby-identifier">ok_file</span>) <span class="ruby-keyword kw">or</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">exists?</span>(<span class="ruby-identifier">fail_file</span>) )
-              <span class="ruby-identifier">newfiles</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-identifier">file</span>          
-            <span class="ruby-keyword kw">end</span>
-          <span class="ruby-keyword kw">end</span>
-          <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">newfiles</span>
-        <span class="ruby-keyword kw">end</span>
-</pre>
-          </div>
-        </div>
-      </div>
-
       <h3 class="section-bar">Protected Instance methods</h3>
 
-      <div id="method-M000024" class="method-detail">
-        <a name="M000024"></a>
+      <div id="method-M000025" class="method-detail">
+        <a name="M000025"></a>
 
         <div class="method-heading">
-          <a href="#M000024" class="method-signature">
+          <a href="#M000025" class="method-signature">
           <span class="method-name">store_file</span><span class="method-args">(file, filename)</span>
           </a>
         </div>
       
         <div class="method-description">
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000024-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000024-source">
+            onclick="toggleCode('M000025-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000025-source">
 <pre>
-<span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 40</span>
+<span class="ruby-comment cmt"># File lib/pho/rdf_collection.rb, line 25</span>
         <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">store_file</span>(<span class="ruby-identifier">file</span>, <span class="ruby-identifier">filename</span>)
           <span class="ruby-identifier">response</span> = <span class="ruby-ivar">@store</span>.<span class="ruby-identifier">store_file</span>(<span class="ruby-identifier">file</span>)
           <span class="ruby-keyword kw">if</span> (<span class="ruby-identifier">response</span>.<span class="ruby-identifier">status</span> <span class="ruby-operator">&lt;</span> <span class="ruby-value">300</span> )

data/doc/rdoc/classes/Pho/Job.html

@@ -101,16 +101,16 @@ about a specific <a href="Job.html">Job</a> from a platform store
       <h3 class="section-bar">Methods</h3>
 
       <div class="name-list">
-      <a href="#M000165">completed?</a>&nbsp;&nbsp;
-      <a href="#M000160">new</a>&nbsp;&nbsp;
-      <a href="#M000162">parse</a>&nbsp;&nbsp;
-      <a href="#M000163">progress_updates</a>&nbsp;&nbsp;
-      <a href="#M000161">read_from_store</a>&nbsp;&nbsp;
-      <a href="#M000167">running?</a>&nbsp;&nbsp;
-      <a href="#M000164">started?</a>&nbsp;&nbsp;
-      <a href="#M000166">successful?</a>&nbsp;&nbsp;
-      <a href="#M000169">with_each</a>&nbsp;&nbsp;
-      <a href="#M000168">with_first</a>&nbsp;&nbsp;
+      <a href="#M000185">completed?</a>&nbsp;&nbsp;
+      <a href="#M000180">new</a>&nbsp;&nbsp;
+      <a href="#M000182">parse</a>&nbsp;&nbsp;
+      <a href="#M000183">progress_updates</a>&nbsp;&nbsp;
+      <a href="#M000181">read_from_store</a>&nbsp;&nbsp;
+      <a href="#M000187">running?</a>&nbsp;&nbsp;
+      <a href="#M000184">started?</a>&nbsp;&nbsp;
+      <a href="#M000186">successful?</a>&nbsp;&nbsp;
+      <a href="#M000189">with_each</a>&nbsp;&nbsp;
+      <a href="#M000188">with_first</a>&nbsp;&nbsp;
       </div>
     </div>
 
@@ -255,11 +255,11 @@ URI of the job
     <div id="methods">
       <h3 class="section-bar">Public Class methods</h3>
 
-      <div id="method-M000160" class="method-detail">
-        <a name="M000160"></a>
+      <div id="method-M000180" class="method-detail">
+        <a name="M000180"></a>
 
         <div class="method-heading">
-          <a href="#M000160" class="method-signature">
+          <a href="#M000180" class="method-signature">
           <span class="method-name">new</span><span class="method-args">(uri, label, type, start_time, created=nil)</span>
           </a>
         </div>
@@ -286,8 +286,8 @@ Constructor. Used in the reading/parsing code
 </td></tr>
 </table>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000160-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000160-source">
+            onclick="toggleCode('M000180-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000180-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/job.rb, line 214</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">uri</span>, <span class="ruby-identifier">label</span>, <span class="ruby-identifier">type</span>, <span class="ruby-identifier">start_time</span>, <span class="ruby-identifier">created</span>=<span class="ruby-keyword kw">nil</span>)
@@ -303,31 +303,32 @@ Constructor. Used in the reading/parsing code
         </div>
       </div>
 
-      <div id="method-M000162" class="method-detail">
-        <a name="M000162"></a>
+      <div id="method-M000182" class="method-detail">
+        <a name="M000182"></a>
 
         <div class="method-heading">
-          <a href="#M000162" class="method-signature">
+          <a href="#M000182" class="method-signature">
           <span class="method-name">parse</span><span class="method-args">(uri, xml)</span>
           </a>
         </div>
       
         <div class="method-description">
           <p>
-Parses job metadata returned from the platform as RDF/XML, creating a fully
-populated <a href="Job.html">Job</a> instance
+Parses job metadata returned from the platform as <a
+href="RDF.html">RDF</a>/XML, creating a fully populated <a
+href="Job.html">Job</a> instance
 </p>
 <table>
 <tr><td valign="top">uri:</td><td>uri of the job to be parsed
 
 </td></tr>
-<tr><td valign="top">xml:</td><td>the RDF/XML text to be parsed
+<tr><td valign="top">xml:</td><td>the <a href="RDF.html">RDF</a>/XML text to be parsed
 
 </td></tr>
 </table>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000162-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000162-source">
+            onclick="toggleCode('M000182-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000182-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/job.rb, line 241</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Job</span>.<span class="ruby-identifier">parse</span>(<span class="ruby-identifier">uri</span>, <span class="ruby-identifier">xml</span>)
@@ -384,11 +385,11 @@ populated <a href="Job.html">Job</a> instance
         </div>
       </div>
 
-      <div id="method-M000161" class="method-detail">
-        <a name="M000161"></a>
+      <div id="method-M000181" class="method-detail">
+        <a name="M000181"></a>
 
         <div class="method-heading">
-          <a href="#M000161" class="method-signature">
+          <a href="#M000181" class="method-signature">
           <span class="method-name">read_from_store</span><span class="method-args">(uri, store)</span>
           </a>
         </div>
@@ -406,8 +407,8 @@ Read a job from a store
 </td></tr>
 </table>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000161-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000161-source">
+            onclick="toggleCode('M000181-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000181-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/job.rb, line 227</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Job</span>.<span class="ruby-identifier">read_from_store</span>(<span class="ruby-identifier">uri</span>, <span class="ruby-identifier">store</span>)
@@ -425,19 +426,19 @@ Read a job from a store
 
       <h3 class="section-bar">Protected Class methods</h3>
 
-      <div id="method-M000169" class="method-detail">
-        <a name="M000169"></a>
+      <div id="method-M000189" class="method-detail">
+        <a name="M000189"></a>
 
         <div class="method-heading">
-          <a href="#M000169" class="method-signature">
+          <a href="#M000189" class="method-signature">
           <span class="method-name">with_each</span><span class="method-args">(el, xpath) {|ref_el| ...}</span>
           </a>
         </div>
       
         <div class="method-description">
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000169-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000169-source">
+            onclick="toggleCode('M000189-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000189-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/job.rb, line 327</span>
       <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Job</span>.<span class="ruby-identifier">with_each</span>(<span class="ruby-identifier">el</span>, <span class="ruby-identifier">xpath</span>)
@@ -453,19 +454,19 @@ Read a job from a store
         </div>
       </div>
 
-      <div id="method-M000168" class="method-detail">
-        <a name="M000168"></a>
+      <div id="method-M000188" class="method-detail">
+        <a name="M000188"></a>
 
         <div class="method-heading">
-          <a href="#M000168" class="method-signature">
+          <a href="#M000188" class="method-signature">
           <span class="method-name">with_first</span><span class="method-args">(el, xpath) {|found_el| ...}</span>
           </a>
         </div>
       
         <div class="method-description">
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000168-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000168-source">
+            onclick="toggleCode('M000188-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000188-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/job.rb, line 320</span>
       <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Job</span>.<span class="ruby-identifier">with_first</span>(<span class="ruby-identifier">el</span>, <span class="ruby-identifier">xpath</span>)
@@ -481,22 +482,22 @@ Read a job from a store
 
       <h3 class="section-bar">Public Instance methods</h3>
 
-      <div id="method-M000165" class="method-detail">
-        <a name="M000165"></a>
+      <div id="method-M000185" class="method-detail">
+        <a name="M000185"></a>
 
         <div class="method-heading">
-          <a href="#M000165" class="method-signature">
+          <a href="#M000185" class="method-signature">
           <span class="method-name">completed?</span><span class="method-args">()</span>
           </a>
         </div>
       
         <div class="method-description">
           <p>
-Has the job <a href="Job.html#M000165">completed?</a>
+Has the job <a href="Job.html#M000185">completed?</a>
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000165-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000165-source">
+            onclick="toggleCode('M000185-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000185-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/job.rb, line 304</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">completed?</span>
@@ -507,19 +508,19 @@ Has the job <a href="Job.html#M000165">completed?</a>
         </div>
       </div>
 
-      <div id="method-M000163" class="method-detail">
-        <a name="M000163"></a>
+      <div id="method-M000183" class="method-detail">
+        <a name="M000183"></a>
 
         <div class="method-heading">
-          <a href="#M000163" class="method-signature">
+          <a href="#M000183" class="method-signature">
           <span class="method-name">progress_updates</span><span class="method-args">()</span>
           </a>
         </div>
       
         <div class="method-description">
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000163-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000163-source">
+            onclick="toggleCode('M000183-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000183-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/job.rb, line 291</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">progress_updates</span>()
@@ -533,22 +534,22 @@ Has the job <a href="Job.html#M000165">completed?</a>
         </div>
       </div>
 
-      <div id="method-M000167" class="method-detail">
-        <a name="M000167"></a>
+      <div id="method-M000187" class="method-detail">
+        <a name="M000187"></a>
 
         <div class="method-heading">
-          <a href="#M000167" class="method-signature">
+          <a href="#M000187" class="method-signature">
           <span class="method-name">running?</span><span class="method-args">()</span>
           </a>
         </div>
       
         <div class="method-description">
           <p>
-Is the job still <a href="Job.html#M000167">running?</a>
+Is the job still <a href="Job.html#M000187">running?</a>
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000167-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000167-source">
+            onclick="toggleCode('M000187-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000187-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/job.rb, line 314</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">running?</span>
@@ -559,22 +560,22 @@ Is the job still <a href="Job.html#M000167">running?</a>
         </div>
       </div>
 
-      <div id="method-M000164" class="method-detail">
-        <a name="M000164"></a>
+      <div id="method-M000184" class="method-detail">
+        <a name="M000184"></a>
 
         <div class="method-heading">
-          <a href="#M000164" class="method-signature">
+          <a href="#M000184" class="method-signature">
           <span class="method-name">started?</span><span class="method-args">()</span>
           </a>
         </div>
       
         <div class="method-description">
           <p>
-Has the job <a href="Job.html#M000164">started?</a>
+Has the job <a href="Job.html#M000184">started?</a>
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000164-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000164-source">
+            onclick="toggleCode('M000184-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000184-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/job.rb, line 299</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">started?</span>
@@ -585,22 +586,22 @@ Has the job <a href="Job.html#M000164">started?</a>
         </div>
       </div>
 
-      <div id="method-M000166" class="method-detail">
-        <a name="M000166"></a>
+      <div id="method-M000186" class="method-detail">
+        <a name="M000186"></a>
 
         <div class="method-heading">
-          <a href="#M000166" class="method-signature">
+          <a href="#M000186" class="method-signature">
           <span class="method-name">successful?</span><span class="method-args">()</span>
           </a>
         </div>
       
         <div class="method-description">
           <p>
-Was the job <a href="Job.html#M000166">successful?</a>
+Was the job <a href="Job.html#M000186">successful?</a>
 </p>
           <p><a class="source-toggle" href="#"
-            onclick="toggleCode('M000166-source');return false;">[Source]</a></p>
-          <div class="method-source-code" id="M000166-source">
+            onclick="toggleCode('M000186-source');return false;">[Source]</a></p>
+          <div class="method-source-code" id="M000186-source">
 <pre>
 <span class="ruby-comment cmt"># File lib/pho/job.rb, line 309</span>
     <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">successful?</span>