pho 0.5 → 0.6

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Files changed (80) hide show
  1. data/CHANGES +17 -0
  2. data/Rakefile +10 -2
  3. data/bin/talis_store +37 -92
  4. data/doc/rdoc/classes/Pho.html +11 -0
  5. data/doc/rdoc/classes/Pho/CommandLine.html +508 -0
  6. data/doc/rdoc/classes/Pho/DatatypeProperty.html +15 -15
  7. data/doc/rdoc/classes/Pho/Enrichment.html +1 -1
  8. data/doc/rdoc/classes/Pho/Enrichment/{ResourceEnricher.html → StoreEnricher.html} +158 -58
  9. data/doc/rdoc/classes/Pho/Etags.html +36 -36
  10. data/doc/rdoc/classes/Pho/Facet/Results.html +19 -19
  11. data/doc/rdoc/classes/Pho/Facet/Term.html +6 -6
  12. data/doc/rdoc/classes/Pho/FieldPredicateMap.html +94 -94
  13. data/doc/rdoc/classes/Pho/FieldWeighting.html +14 -14
  14. data/doc/rdoc/classes/Pho/FileManagement/AbstractFileManager.html +126 -91
  15. data/doc/rdoc/classes/Pho/FileManagement/FileManager.html +68 -62
  16. data/doc/rdoc/classes/Pho/FileManagement/RDFManager.html +22 -57
  17. data/doc/rdoc/classes/Pho/Job.html +68 -67
  18. data/doc/rdoc/classes/Pho/Jobs.html +62 -62
  19. data/doc/rdoc/classes/Pho/QueryProfile.html +64 -64
  20. data/doc/rdoc/classes/Pho/RDF.html +120 -0
  21. data/doc/rdoc/classes/Pho/RDF/Parser.html +277 -0
  22. data/doc/rdoc/classes/Pho/ResourceHash.html +1 -1
  23. data/doc/rdoc/classes/Pho/ResourceHash/Converter.html +48 -46
  24. data/doc/rdoc/classes/Pho/ResourceHash/SetAlgebra.html +15 -14
  25. data/doc/rdoc/classes/Pho/Snapshot.html +36 -36
  26. data/doc/rdoc/classes/Pho/Sparql.html +50 -0
  27. data/doc/rdoc/classes/Pho/Sparql/SparqlClient.html +147 -68
  28. data/doc/rdoc/classes/Pho/Sparql/SparqlHelper.html +195 -114
  29. data/doc/rdoc/classes/Pho/Status.html +26 -26
  30. data/doc/rdoc/classes/Pho/Store.html +271 -264
  31. data/doc/rdoc/classes/Pho/StoreSparqlClient.html +183 -0
  32. data/doc/rdoc/classes/Pho/Update.html +1 -0
  33. data/doc/rdoc/classes/Pho/Update/Changeset.html +69 -68
  34. data/doc/rdoc/classes/Pho/Update/ChangesetBuilder.html +24 -24
  35. data/doc/rdoc/classes/Pho/Update/Changesets.html +15 -14
  36. data/doc/rdoc/classes/Pho/Update/LiteralStatement.html +18 -18
  37. data/doc/rdoc/classes/Pho/Update/ResourceStatement.html +24 -24
  38. data/doc/rdoc/classes/Pho/Update/Statement.html +28 -27
  39. data/doc/rdoc/classes/String.html +1 -1
  40. data/doc/rdoc/created.rid +1 -1
  41. data/doc/rdoc/files/CHANGES.html +53 -1
  42. data/doc/rdoc/files/lib/pho/changeset_rb.html +1 -1
  43. data/doc/rdoc/files/lib/pho/command_line_rb.html +101 -0
  44. data/doc/rdoc/files/lib/pho/converter_rb.html +1 -1
  45. data/doc/rdoc/files/lib/pho/enrichment_rb.html +1 -1
  46. data/doc/rdoc/files/lib/pho/file_management_rb.html +1 -1
  47. data/doc/rdoc/files/lib/pho/file_manager_rb.html +1 -1
  48. data/doc/rdoc/files/lib/pho/rdf_collection_rb.html +1 -1
  49. data/doc/rdoc/files/lib/pho/rdf_rb.html +108 -0
  50. data/doc/rdoc/files/lib/pho/sparql_rb.html +1 -1
  51. data/doc/rdoc/files/lib/pho/store_rb.html +8 -1
  52. data/doc/rdoc/files/lib/pho_rb.html +4 -2
  53. data/doc/rdoc/fr_class_index.html +6 -1
  54. data/doc/rdoc/fr_file_index.html +2 -0
  55. data/doc/rdoc/fr_method_index.html +192 -172
  56. data/examples/calais/bio.txt +7 -0
  57. data/examples/calais/dump.rb +17 -0
  58. data/examples/calais/enlighten.rb +23 -0
  59. data/examples/calais/output.rdf +25 -0
  60. data/examples/sinatra/viewer.rb +20 -0
  61. data/lib/pho.rb +4 -1
  62. data/lib/pho/changeset.rb +17 -1
  63. data/lib/pho/command_line.rb +166 -0
  64. data/lib/pho/converter.rb +8 -3
  65. data/lib/pho/enrichment.rb +93 -28
  66. data/lib/pho/file_management.rb +32 -19
  67. data/lib/pho/file_manager.rb +22 -26
  68. data/lib/pho/rdf.rb +74 -0
  69. data/lib/pho/rdf_collection.rb +2 -17
  70. data/lib/pho/sparql.rb +150 -38
  71. data/lib/pho/store.rb +28 -2
  72. data/tests/tc_contentbox.rb +41 -0
  73. data/tests/tc_enrichment.rb +41 -4
  74. data/tests/tc_file_manager.rb +97 -7
  75. data/tests/tc_rdf_collection.rb +25 -13
  76. data/tests/tc_rdf_parser.rb +37 -0
  77. data/tests/tc_sparql.rb +72 -2
  78. data/tests/tc_sparql_helper.rb +16 -0
  79. data/tests/ts_pho.rb +2 -1
  80. metadata +20 -3
@@ -93,10 +93,10 @@ href="Changesets.html">Changesets</a> from triple hashes
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  <h3 class="section-bar">Methods</h3>
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  <div class="name-list">
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- <a href="#M000042">build</a>&nbsp;&nbsp;
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- <a href="#M000041">build_batch</a>&nbsp;&nbsp;
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- <a href="#M000043">create_statements</a>&nbsp;&nbsp;
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- <a href="#M000044">create_statements_for_uri</a>&nbsp;&nbsp;
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+ <a href="#M000045">build</a>&nbsp;&nbsp;
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+ <a href="#M000044">build_batch</a>&nbsp;&nbsp;
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+ <a href="#M000046">create_statements</a>&nbsp;&nbsp;
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+ <a href="#M000047">create_statements_for_uri</a>&nbsp;&nbsp;
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  </div>
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  </div>
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@@ -118,11 +118,11 @@ href="Changesets.html">Changesets</a> from triple hashes
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  <div id="methods">
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  <h3 class="section-bar">Public Class methods</h3>
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- <div id="method-M000042" class="method-detail">
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+ <div id="method-M000045" class="method-detail">
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+ <a name="M000045"></a>
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  <div class="method-heading">
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- <a href="#M000042" class="method-signature">
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+ <a href="#M000045" class="method-signature">
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  <span class="method-name">build</span><span class="method-args">(subject_of_change, before, after, creator_name=nil, change_reason=nil)</span>
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  </a>
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  </div>
@@ -148,8 +148,8 @@ object.
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  change_reason:: description of why the changes are being made
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  </pre>
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- onclick="toggleCode('M000042-source');return false;">[Source]</a></p>
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+ <div class="method-source-code" id="M000045-source">
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  <pre>
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  <span class="ruby-comment cmt"># File lib/pho/changeset_builder.rb, line 65</span>
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  <span class="ruby-keyword kw">def</span> <span class="ruby-constant">ChangesetBuilder</span>.<span class="ruby-identifier">build</span>(<span class="ruby-identifier">subject_of_change</span>, <span class="ruby-identifier">before</span>, <span class="ruby-identifier">after</span>, <span class="ruby-identifier">creator_name</span>=<span class="ruby-keyword kw">nil</span>, <span class="ruby-identifier">change_reason</span>=<span class="ruby-keyword kw">nil</span>)
@@ -169,11 +169,11 @@ object.
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  </div>
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  <span class="method-name">build_batch</span><span class="method-args">(before, after, creator_name=nil, change_reason=nil)</span>
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  </a>
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  </div>
@@ -196,8 +196,8 @@ Returns an array of <a href="Changeset.html">Changeset</a> objects
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  change_reason:: description of why the changes are being made
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  </pre>
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  <span class="ruby-comment cmt"># File lib/pho/changeset_builder.rb, line 22</span>
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  <span class="ruby-keyword kw">def</span> <span class="ruby-constant">ChangesetBuilder</span>.<span class="ruby-identifier">build_batch</span>(<span class="ruby-identifier">before</span>, <span class="ruby-identifier">after</span>, <span class="ruby-identifier">creator_name</span>=<span class="ruby-keyword kw">nil</span>, <span class="ruby-identifier">change_reason</span>=<span class="ruby-keyword kw">nil</span>)
@@ -235,11 +235,11 @@ Returns an array of <a href="Changeset.html">Changeset</a> objects
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  <span class="method-name">create_statements</span><span class="method-args">(triples)</span>
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@@ -253,8 +253,8 @@ href="Statement.html">Pho::Update::Statement</a> objects
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  triples:: a resource hash, conforming to RDF-in-JSON structure
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  <span class="ruby-keyword kw">def</span> <span class="ruby-constant">ChangesetBuilder</span>.<span class="ruby-identifier">create_statements</span>(<span class="ruby-identifier">triples</span>)
@@ -269,11 +269,11 @@ href="Statement.html">Pho::Update::Statement</a> objects
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  <span class="ruby-keyword kw">def</span> <span class="ruby-constant">ChangesetBuilder</span>.<span class="ruby-identifier">create_statements_for_uri</span>(<span class="ruby-identifier">uri</span>, <span class="ruby-identifier">properties</span>)
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- <a href="#M000046">==</a>&nbsp;&nbsp;
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93
- <a href="#M000048">write_object</a>&nbsp;&nbsp;
94
- <a href="#M000047">write_subject</a>&nbsp;&nbsp;
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+ <a href="#M000049">==</a>&nbsp;&nbsp;
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+ <a href="#M000048">new</a>&nbsp;&nbsp;
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+ <a href="#M000051">write_object</a>&nbsp;&nbsp;
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+ <a href="#M000050">write_subject</a>&nbsp;&nbsp;
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@@ -113,11 +113,11 @@
113
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  <div id="methods">
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  <h3 class="section-bar">Public Class methods</h3>
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+ <div id="method-M000048" class="method-detail">
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  <span class="method-name">new</span><span class="method-args">(subject, predicate, object)</span>
122
122
  </a>
123
123
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@@ -132,8 +132,8 @@ Create a <a href="Statement.html">Statement</a> referring to a resource
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  object:: resource uri
133
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  <pre>
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  <span class="ruby-comment cmt"># File lib/pho/changeset.rb, line 127</span>
139
139
  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">subject</span>, <span class="ruby-identifier">predicate</span>, <span class="ruby-identifier">object</span>)
@@ -146,19 +146,19 @@ Create a <a href="Statement.html">Statement</a> referring to a resource
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  <h3 class="section-bar">Public Instance methods</h3>
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  <span class="method-name">==</span><span class="method-args">(other)</span>
155
155
  </a>
156
156
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163
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  <span class="ruby-comment cmt"># File lib/pho/changeset.rb, line 131</span>
164
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  <span class="ruby-keyword kw">def</span> <span class="ruby-operator">==</span>(<span class="ruby-identifier">other</span>)
@@ -176,19 +176,19 @@ Create a <a href="Statement.html">Statement</a> referring to a resource
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  <h3 class="section-bar">Protected Instance methods</h3>
178
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  <span class="method-name">write_object</span><span class="method-args">()</span>
185
185
  </a>
186
186
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  <pre>
193
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  <span class="ruby-comment cmt"># File lib/pho/changeset.rb, line 145</span>
194
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  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">write_object</span>()
@@ -199,19 +199,19 @@ Create a <a href="Statement.html">Statement</a> referring to a resource
199
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200
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208
208
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209
209
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216
216
  <span class="ruby-comment cmt"># File lib/pho/changeset.rb, line 141</span>
217
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  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">write_subject</span>()
@@ -80,8 +80,9 @@
80
80
 
81
81
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82
82
  <p>
83
- Base class capturing data relating to a reified RDF triple described in a
84
- <a href="Changeset.html">Changeset</a>
83
+ Base class capturing data relating to a reified <a
84
+ href="../RDF.html">RDF</a> triple described in a <a
85
+ href="Changeset.html">Changeset</a>
85
86
  </p>
86
87
 
87
88
  </div>
@@ -93,10 +94,10 @@ Base class capturing data relating to a reified RDF triple described in a
93
94
  <h3 class="section-bar">Methods</h3>
94
95
 
95
96
  <div class="name-list">
96
- <a href="#M000051">create_literal</a>&nbsp;&nbsp;
97
- <a href="#M000052">create_resource</a>&nbsp;&nbsp;
98
- <a href="#M000054">new</a>&nbsp;&nbsp;
99
- <a href="#M000053">to_rdf</a>&nbsp;&nbsp;
97
+ <a href="#M000054">create_literal</a>&nbsp;&nbsp;
98
+ <a href="#M000055">create_resource</a>&nbsp;&nbsp;
99
+ <a href="#M000057">new</a>&nbsp;&nbsp;
100
+ <a href="#M000056">to_rdf</a>&nbsp;&nbsp;
100
101
  </div>
101
102
  </div>
102
103
 
@@ -150,11 +151,11 @@ URI of subject
150
151
  <div id="methods">
151
152
  <h3 class="section-bar">Public Class methods</h3>
152
153
 
153
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158
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158
159
  <span class="method-name">create_literal</span><span class="method-args">(subject, predicate, object, lang=nil, datatype=nil)</span>
159
160
  </a>
160
161
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@@ -172,8 +173,8 @@ have one of lang or datatype but not both
172
173
  datatype:: datatype for literal
173
174
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174
175
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175
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+ <div class="method-source-code" id="M000054-source">
177
178
  <pre>
178
179
  <span class="ruby-comment cmt"># File lib/pho/changeset.rb, line 29</span>
179
180
  <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Statement</span>.<span class="ruby-identifier">create_literal</span>(<span class="ruby-identifier">subject</span>, <span class="ruby-identifier">predicate</span>, <span class="ruby-identifier">object</span>, <span class="ruby-identifier">lang</span>=<span class="ruby-keyword kw">nil</span>, <span class="ruby-identifier">datatype</span>=<span class="ruby-keyword kw">nil</span>)
@@ -184,11 +185,11 @@ have one of lang or datatype but not both
184
185
  </div>
185
186
  </div>
186
187
 
187
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188
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188
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189
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190
191
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191
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192
+ <a href="#M000055" class="method-signature">
192
193
  <span class="method-name">create_resource</span><span class="method-args">(subject, predicate, object)</span>
193
194
  </a>
194
195
  </div>
@@ -203,8 +204,8 @@ Create a <a href="Statement.html">Statement</a> referring to a resource
203
204
  object:: resource uri
204
205
  </pre>
205
206
  <p><a class="source-toggle" href="#"
206
- onclick="toggleCode('M000052-source');return false;">[Source]</a></p>
207
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207
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208
+ <div class="method-source-code" id="M000055-source">
208
209
  <pre>
209
210
  <span class="ruby-comment cmt"># File lib/pho/changeset.rb, line 38</span>
210
211
  <span class="ruby-keyword kw">def</span> <span class="ruby-constant">Statement</span>.<span class="ruby-identifier">create_resource</span>(<span class="ruby-identifier">subject</span>, <span class="ruby-identifier">predicate</span>, <span class="ruby-identifier">object</span>)
@@ -217,11 +218,11 @@ Create a <a href="Statement.html">Statement</a> referring to a resource
217
218
 
218
219
  <h3 class="section-bar">Protected Class methods</h3>
219
220
 
220
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221
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221
+ <div id="method-M000057" class="method-detail">
222
+ <a name="M000057"></a>
222
223
 
223
224
  <div class="method-heading">
224
- <a href="#M000054" class="method-signature">
225
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225
226
  <span class="method-name">new</span><span class="method-args">(subject, predicate, object)</span>
226
227
  </a>
227
228
  </div>
@@ -239,8 +240,8 @@ Create a <a href="Statement.html">Statement</a> referring to a resource
239
240
  </td></tr>
240
241
  </table>
241
242
  <p><a class="source-toggle" href="#"
242
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243
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243
+ onclick="toggleCode('M000057-source');return false;">[Source]</a></p>
244
+ <div class="method-source-code" id="M000057-source">
244
245
  <pre>
245
246
  <span class="ruby-comment cmt"># File lib/pho/changeset.rb, line 61</span>
246
247
  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">subject</span>, <span class="ruby-identifier">predicate</span>, <span class="ruby-identifier">object</span>)
@@ -255,23 +256,23 @@ Create a <a href="Statement.html">Statement</a> referring to a resource
255
256
 
256
257
  <h3 class="section-bar">Public Instance methods</h3>
257
258
 
258
- <div id="method-M000053" class="method-detail">
259
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259
+ <div id="method-M000056" class="method-detail">
260
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261
 
261
262
  <div class="method-heading">
262
- <a href="#M000053" class="method-signature">
263
+ <a href="#M000056" class="method-signature">
263
264
  <span class="method-name">to_rdf</span><span class="method-args">()</span>
264
265
  </a>
265
266
  </div>
266
267
 
267
268
  <div class="method-description">
268
269
  <p>
269
- Create an RDF/XML fragment describing this <a
270
+ Create an <a href="../RDF.html">RDF</a>/XML fragment describing this <a
270
271
  href="Statement.html">Statement</a>
271
272
  </p>
272
273
  <p><a class="source-toggle" href="#"
273
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274
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274
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275
+ <div class="method-source-code" id="M000056-source">
275
276
  <pre>
276
277
  <span class="ruby-comment cmt"># File lib/pho/changeset.rb, line 43</span>
277
278
  <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">to_rdf</span>()