pharmaobservatory 0.1.0 → 0.1.2

data/lib/pharmaobservatory/models/cell_lines_list200_response_query_filters.rb

@@ -0,0 +1,222 @@
+=begin
+#Pharma Observatory Public REST API
+
+#Read-only REST API over the Pharma Observatory biomedical data platform. Reference: https://pharmaobservatory.com/api-reference
+
+The version of the OpenAPI document: 1.0.0
+
+Generated by: https://openapi-generator.tech
+Generator version: 7.13.0
+
+=end
+
+require 'date'
+require 'time'
+
+module PharmaObservatory
+  class CellLinesList200ResponseQueryFilters
+    attr_accessor :safety_status
+
+    # Attribute mapping from ruby-style variable name to JSON key.
+    def self.attribute_map
+      {
+        :'safety_status' => :'safety_status'
+      }
+    end
+
+    # Returns attribute mapping this model knows about
+    def self.acceptable_attribute_map
+      attribute_map
+    end
+
+    # Returns all the JSON keys this model knows about
+    def self.acceptable_attributes
+      acceptable_attribute_map.values
+    end
+
+    # Attribute type mapping.
+    def self.openapi_types
+      {
+        :'safety_status' => :'Array<String>'
+      }
+    end
+
+    # List of attributes with nullable: true
+    def self.openapi_nullable
+      Set.new([
+      ])
+    end
+
+    # Initializes the object
+    # @param [Hash] attributes Model attributes in the form of hash
+    def initialize(attributes = {})
+      if (!attributes.is_a?(Hash))
+        fail ArgumentError, "The input argument (attributes) must be a hash in `PharmaObservatory::CellLinesList200ResponseQueryFilters` initialize method"
+      end
+
+      # check to see if the attribute exists and convert string to symbol for hash key
+      acceptable_attribute_map = self.class.acceptable_attribute_map
+      attributes = attributes.each_with_object({}) { |(k, v), h|
+        if (!acceptable_attribute_map.key?(k.to_sym))
+          fail ArgumentError, "`#{k}` is not a valid attribute in `PharmaObservatory::CellLinesList200ResponseQueryFilters`. Please check the name to make sure it's valid. List of attributes: " + acceptable_attribute_map.keys.inspect
+        end
+        h[k.to_sym] = v
+      }
+
+      if attributes.key?(:'safety_status')
+        if (value = attributes[:'safety_status']).is_a?(Array)
+          self.safety_status = value
+        end
+      end
+    end
+
+    # Show invalid properties with the reasons. Usually used together with valid?
+    # @return Array for valid properties with the reasons
+    def list_invalid_properties
+      warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
+      invalid_properties = Array.new
+      invalid_properties
+    end
+
+    # Check to see if the all the properties in the model are valid
+    # @return true if the model is valid
+    def valid?
+      warn '[DEPRECATED] the `valid?` method is obsolete'
+      true
+    end
+
+    # Checks equality by comparing each attribute.
+    # @param [Object] Object to be compared
+    def ==(o)
+      return true if self.equal?(o)
+      self.class == o.class &&
+          safety_status == o.safety_status
+    end
+
+    # @see the `==` method
+    # @param [Object] Object to be compared
+    def eql?(o)
+      self == o
+    end
+
+    # Calculates hash code according to all attributes.
+    # @return [Integer] Hash code
+    def hash
+      [safety_status].hash
+    end
+
+    # Builds the object from hash
+    # @param [Hash] attributes Model attributes in the form of hash
+    # @return [Object] Returns the model itself
+    def self.build_from_hash(attributes)
+      return nil unless attributes.is_a?(Hash)
+      attributes = attributes.transform_keys(&:to_sym)
+      transformed_hash = {}
+      openapi_types.each_pair do |key, type|
+        if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = nil
+        elsif type =~ /\AArray<(.*)>/i
+          # check to ensure the input is an array given that the attribute
+          # is documented as an array but the input is not
+          if attributes[attribute_map[key]].is_a?(Array)
+            transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
+          end
+        elsif !attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
+        end
+      end
+      new(transformed_hash)
+    end
+
+    # Deserializes the data based on type
+    # @param string type Data type
+    # @param string value Value to be deserialized
+    # @return [Object] Deserialized data
+    def self._deserialize(type, value)
+      case type.to_sym
+      when :Time
+        Time.parse(value)
+      when :Date
+        Date.parse(value)
+      when :String
+        value.to_s
+      when :Integer
+        value.to_i
+      when :Float
+        value.to_f
+      when :Boolean
+        if value.to_s =~ /\A(true|t|yes|y|1)\z/i
+          true
+        else
+          false
+        end
+      when :Object
+        # generic object (usually a Hash), return directly
+        value
+      when /\AArray<(?<inner_type>.+)>\z/
+        inner_type = Regexp.last_match[:inner_type]
+        value.map { |v| _deserialize(inner_type, v) }
+      when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
+        k_type = Regexp.last_match[:k_type]
+        v_type = Regexp.last_match[:v_type]
+        {}.tap do |hash|
+          value.each do |k, v|
+            hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
+          end
+        end
+      else # model
+        # models (e.g. Pet) or oneOf
+        klass = PharmaObservatory.const_get(type)
+        klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
+      end
+    end
+
+    # Returns the string representation of the object
+    # @return [String] String presentation of the object
+    def to_s
+      to_hash.to_s
+    end
+
+    # to_body is an alias to to_hash (backward compatibility)
+    # @return [Hash] Returns the object in the form of hash
+    def to_body
+      to_hash
+    end
+
+    # Returns the object in the form of hash
+    # @return [Hash] Returns the object in the form of hash
+    def to_hash
+      hash = {}
+      self.class.attribute_map.each_pair do |attr, param|
+        value = self.send(attr)
+        if value.nil?
+          is_nullable = self.class.openapi_nullable.include?(attr)
+          next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
+        end
+
+        hash[param] = _to_hash(value)
+      end
+      hash
+    end
+
+    # Outputs non-array value in the form of hash
+    # For object, use to_hash. Otherwise, just return the value
+    # @param [Object] value Any valid value
+    # @return [Hash] Returns the value in the form of hash
+    def _to_hash(value)
+      if value.is_a?(Array)
+        value.compact.map { |v| _to_hash(v) }
+      elsif value.is_a?(Hash)
+        {}.tap do |hash|
+          value.each { |k, v| hash[k] = _to_hash(v) }
+        end
+      elsif value.respond_to? :to_hash
+        value.to_hash
+      else
+        value
+      end
+    end
+
+  end
+
+end

data/lib/pharmaobservatory/models/cell_lines_list200_response_rows_inner.rb

@@ -0,0 +1,441 @@
+=begin
+#Pharma Observatory Public REST API
+
+#Read-only REST API over the Pharma Observatory biomedical data platform. Reference: https://pharmaobservatory.com/api-reference
+
+The version of the OpenAPI document: 1.0.0
+
+Generated by: https://openapi-generator.tech
+Generator version: 7.13.0
+
+=end
+
+require 'date'
+require 'time'
+
+module PharmaObservatory
+  class CellLinesList200ResponseRowsInner
+    attr_accessor :scientist_model_id
+
+    attr_accessor :model_lot_id
+
+    attr_accessor :cell_type
+
+    attr_accessor :supplier
+
+    attr_accessor :sample_species
+
+    attr_accessor :safety_status
+
+    attr_accessor :safety_label
+
+    attr_accessor :confirmed_problematic
+
+    attr_accessor :cellosaurus_accession
+
+    attr_accessor :cellosaurus_url
+
+    attr_accessor :problematic_comment
+
+    # Attribute mapping from ruby-style variable name to JSON key.
+    def self.attribute_map
+      {
+        :'scientist_model_id' => :'scientist_model_id',
+        :'model_lot_id' => :'model_lot_id',
+        :'cell_type' => :'cell_type',
+        :'supplier' => :'supplier',
+        :'sample_species' => :'sample_species',
+        :'safety_status' => :'safety_status',
+        :'safety_label' => :'safety_label',
+        :'confirmed_problematic' => :'confirmed_problematic',
+        :'cellosaurus_accession' => :'cellosaurus_accession',
+        :'cellosaurus_url' => :'cellosaurus_url',
+        :'problematic_comment' => :'problematic_comment'
+      }
+    end
+
+    # Returns attribute mapping this model knows about
+    def self.acceptable_attribute_map
+      attribute_map
+    end
+
+    # Returns all the JSON keys this model knows about
+    def self.acceptable_attributes
+      acceptable_attribute_map.values
+    end
+
+    # Attribute type mapping.
+    def self.openapi_types
+      {
+        :'scientist_model_id' => :'String',
+        :'model_lot_id' => :'String',
+        :'cell_type' => :'String',
+        :'supplier' => :'String',
+        :'sample_species' => :'String',
+        :'safety_status' => :'String',
+        :'safety_label' => :'String',
+        :'confirmed_problematic' => :'Boolean',
+        :'cellosaurus_accession' => :'String',
+        :'cellosaurus_url' => :'String',
+        :'problematic_comment' => :'String'
+      }
+    end
+
+    # List of attributes with nullable: true
+    def self.openapi_nullable
+      Set.new([
+        :'cell_type',
+        :'cellosaurus_accession',
+        :'cellosaurus_url',
+        :'problematic_comment'
+      ])
+    end
+
+    # Initializes the object
+    # @param [Hash] attributes Model attributes in the form of hash
+    def initialize(attributes = {})
+      if (!attributes.is_a?(Hash))
+        fail ArgumentError, "The input argument (attributes) must be a hash in `PharmaObservatory::CellLinesList200ResponseRowsInner` initialize method"
+      end
+
+      # check to see if the attribute exists and convert string to symbol for hash key
+      acceptable_attribute_map = self.class.acceptable_attribute_map
+      attributes = attributes.each_with_object({}) { |(k, v), h|
+        if (!acceptable_attribute_map.key?(k.to_sym))
+          fail ArgumentError, "`#{k}` is not a valid attribute in `PharmaObservatory::CellLinesList200ResponseRowsInner`. Please check the name to make sure it's valid. List of attributes: " + acceptable_attribute_map.keys.inspect
+        end
+        h[k.to_sym] = v
+      }
+
+      if attributes.key?(:'scientist_model_id')
+        self.scientist_model_id = attributes[:'scientist_model_id']
+      else
+        self.scientist_model_id = nil
+      end
+
+      if attributes.key?(:'model_lot_id')
+        self.model_lot_id = attributes[:'model_lot_id']
+      else
+        self.model_lot_id = nil
+      end
+
+      if attributes.key?(:'cell_type')
+        self.cell_type = attributes[:'cell_type']
+      else
+        self.cell_type = nil
+      end
+
+      if attributes.key?(:'supplier')
+        self.supplier = attributes[:'supplier']
+      else
+        self.supplier = nil
+      end
+
+      if attributes.key?(:'sample_species')
+        self.sample_species = attributes[:'sample_species']
+      else
+        self.sample_species = nil
+      end
+
+      if attributes.key?(:'safety_status')
+        self.safety_status = attributes[:'safety_status']
+      else
+        self.safety_status = nil
+      end
+
+      if attributes.key?(:'safety_label')
+        self.safety_label = attributes[:'safety_label']
+      else
+        self.safety_label = nil
+      end
+
+      if attributes.key?(:'confirmed_problematic')
+        self.confirmed_problematic = attributes[:'confirmed_problematic']
+      else
+        self.confirmed_problematic = nil
+      end
+
+      if attributes.key?(:'cellosaurus_accession')
+        self.cellosaurus_accession = attributes[:'cellosaurus_accession']
+      else
+        self.cellosaurus_accession = nil
+      end
+
+      if attributes.key?(:'cellosaurus_url')
+        self.cellosaurus_url = attributes[:'cellosaurus_url']
+      else
+        self.cellosaurus_url = nil
+      end
+
+      if attributes.key?(:'problematic_comment')
+        self.problematic_comment = attributes[:'problematic_comment']
+      else
+        self.problematic_comment = nil
+      end
+    end
+
+    # Show invalid properties with the reasons. Usually used together with valid?
+    # @return Array for valid properties with the reasons
+    def list_invalid_properties
+      warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
+      invalid_properties = Array.new
+      if @scientist_model_id.nil?
+        invalid_properties.push('invalid value for "scientist_model_id", scientist_model_id cannot be nil.')
+      end
+
+      if @model_lot_id.nil?
+        invalid_properties.push('invalid value for "model_lot_id", model_lot_id cannot be nil.')
+      end
+
+      if @supplier.nil?
+        invalid_properties.push('invalid value for "supplier", supplier cannot be nil.')
+      end
+
+      if @sample_species.nil?
+        invalid_properties.push('invalid value for "sample_species", sample_species cannot be nil.')
+      end
+
+      if @safety_status.nil?
+        invalid_properties.push('invalid value for "safety_status", safety_status cannot be nil.')
+      end
+
+      if @safety_label.nil?
+        invalid_properties.push('invalid value for "safety_label", safety_label cannot be nil.')
+      end
+
+      if @confirmed_problematic.nil?
+        invalid_properties.push('invalid value for "confirmed_problematic", confirmed_problematic cannot be nil.')
+      end
+
+      invalid_properties
+    end
+
+    # Check to see if the all the properties in the model are valid
+    # @return true if the model is valid
+    def valid?
+      warn '[DEPRECATED] the `valid?` method is obsolete'
+      return false if @scientist_model_id.nil?
+      return false if @model_lot_id.nil?
+      return false if @supplier.nil?
+      return false if @sample_species.nil?
+      return false if @safety_status.nil?
+      return false if @safety_label.nil?
+      return false if @confirmed_problematic.nil?
+      true
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] scientist_model_id Value to be assigned
+    def scientist_model_id=(scientist_model_id)
+      if scientist_model_id.nil?
+        fail ArgumentError, 'scientist_model_id cannot be nil'
+      end
+
+      @scientist_model_id = scientist_model_id
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] model_lot_id Value to be assigned
+    def model_lot_id=(model_lot_id)
+      if model_lot_id.nil?
+        fail ArgumentError, 'model_lot_id cannot be nil'
+      end
+
+      @model_lot_id = model_lot_id
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] supplier Value to be assigned
+    def supplier=(supplier)
+      if supplier.nil?
+        fail ArgumentError, 'supplier cannot be nil'
+      end
+
+      @supplier = supplier
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] sample_species Value to be assigned
+    def sample_species=(sample_species)
+      if sample_species.nil?
+        fail ArgumentError, 'sample_species cannot be nil'
+      end
+
+      @sample_species = sample_species
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] safety_status Value to be assigned
+    def safety_status=(safety_status)
+      if safety_status.nil?
+        fail ArgumentError, 'safety_status cannot be nil'
+      end
+
+      @safety_status = safety_status
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] safety_label Value to be assigned
+    def safety_label=(safety_label)
+      if safety_label.nil?
+        fail ArgumentError, 'safety_label cannot be nil'
+      end
+
+      @safety_label = safety_label
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] confirmed_problematic Value to be assigned
+    def confirmed_problematic=(confirmed_problematic)
+      if confirmed_problematic.nil?
+        fail ArgumentError, 'confirmed_problematic cannot be nil'
+      end
+
+      @confirmed_problematic = confirmed_problematic
+    end
+
+    # Checks equality by comparing each attribute.
+    # @param [Object] Object to be compared
+    def ==(o)
+      return true if self.equal?(o)
+      self.class == o.class &&
+          scientist_model_id == o.scientist_model_id &&
+          model_lot_id == o.model_lot_id &&
+          cell_type == o.cell_type &&
+          supplier == o.supplier &&
+          sample_species == o.sample_species &&
+          safety_status == o.safety_status &&
+          safety_label == o.safety_label &&
+          confirmed_problematic == o.confirmed_problematic &&
+          cellosaurus_accession == o.cellosaurus_accession &&
+          cellosaurus_url == o.cellosaurus_url &&
+          problematic_comment == o.problematic_comment
+    end
+
+    # @see the `==` method
+    # @param [Object] Object to be compared
+    def eql?(o)
+      self == o
+    end
+
+    # Calculates hash code according to all attributes.
+    # @return [Integer] Hash code
+    def hash
+      [scientist_model_id, model_lot_id, cell_type, supplier, sample_species, safety_status, safety_label, confirmed_problematic, cellosaurus_accession, cellosaurus_url, problematic_comment].hash
+    end
+
+    # Builds the object from hash
+    # @param [Hash] attributes Model attributes in the form of hash
+    # @return [Object] Returns the model itself
+    def self.build_from_hash(attributes)
+      return nil unless attributes.is_a?(Hash)
+      attributes = attributes.transform_keys(&:to_sym)
+      transformed_hash = {}
+      openapi_types.each_pair do |key, type|
+        if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = nil
+        elsif type =~ /\AArray<(.*)>/i
+          # check to ensure the input is an array given that the attribute
+          # is documented as an array but the input is not
+          if attributes[attribute_map[key]].is_a?(Array)
+            transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
+          end
+        elsif !attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
+        end
+      end
+      new(transformed_hash)
+    end
+
+    # Deserializes the data based on type
+    # @param string type Data type
+    # @param string value Value to be deserialized
+    # @return [Object] Deserialized data
+    def self._deserialize(type, value)
+      case type.to_sym
+      when :Time
+        Time.parse(value)
+      when :Date
+        Date.parse(value)
+      when :String
+        value.to_s
+      when :Integer
+        value.to_i
+      when :Float
+        value.to_f
+      when :Boolean
+        if value.to_s =~ /\A(true|t|yes|y|1)\z/i
+          true
+        else
+          false
+        end
+      when :Object
+        # generic object (usually a Hash), return directly
+        value
+      when /\AArray<(?<inner_type>.+)>\z/
+        inner_type = Regexp.last_match[:inner_type]
+        value.map { |v| _deserialize(inner_type, v) }
+      when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
+        k_type = Regexp.last_match[:k_type]
+        v_type = Regexp.last_match[:v_type]
+        {}.tap do |hash|
+          value.each do |k, v|
+            hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
+          end
+        end
+      else # model
+        # models (e.g. Pet) or oneOf
+        klass = PharmaObservatory.const_get(type)
+        klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
+      end
+    end
+
+    # Returns the string representation of the object
+    # @return [String] String presentation of the object
+    def to_s
+      to_hash.to_s
+    end
+
+    # to_body is an alias to to_hash (backward compatibility)
+    # @return [Hash] Returns the object in the form of hash
+    def to_body
+      to_hash
+    end
+
+    # Returns the object in the form of hash
+    # @return [Hash] Returns the object in the form of hash
+    def to_hash
+      hash = {}
+      self.class.attribute_map.each_pair do |attr, param|
+        value = self.send(attr)
+        if value.nil?
+          is_nullable = self.class.openapi_nullable.include?(attr)
+          next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
+        end
+
+        hash[param] = _to_hash(value)
+      end
+      hash
+    end
+
+    # Outputs non-array value in the form of hash
+    # For object, use to_hash. Otherwise, just return the value
+    # @param [Object] value Any valid value
+    # @return [Hash] Returns the value in the form of hash
+    def _to_hash(value)
+      if value.is_a?(Array)
+        value.compact.map { |v| _to_hash(v) }
+      elsif value.is_a?(Hash)
+        {}.tap do |hash|
+          value.each { |k, v| hash[k] = _to_hash(v) }
+        end
+      elsif value.respond_to? :to_hash
+        value.to_hash
+      else
+        value
+      end
+    end
+
+  end
+
+end