pharmaobservatory 0.1.0 → 0.1.2

data/lib/pharmaobservatory/models/biomarkers_sample_screening200_response_context.rb

@@ -0,0 +1,333 @@
+=begin
+#Pharma Observatory Public REST API
+
+#Read-only REST API over the Pharma Observatory biomedical data platform. Reference: https://pharmaobservatory.com/api-reference
+
+The version of the OpenAPI document: 1.0.0
+
+Generated by: https://openapi-generator.tech
+Generator version: 7.13.0
+
+=end
+
+require 'date'
+require 'time'
+
+module PharmaObservatory
+  class BiomarkersSampleScreening200ResponseContext
+    attr_accessor :coverage_counts
+
+    attr_accessor :requested_positive_samples
+
+    attr_accessor :zero_variants
+
+    attr_accessor :multiple_variants
+
+    attr_accessor :source_error_variants
+
+    # Attribute mapping from ruby-style variable name to JSON key.
+    def self.attribute_map
+      {
+        :'coverage_counts' => :'coverage_counts',
+        :'requested_positive_samples' => :'requested_positive_samples',
+        :'zero_variants' => :'zero_variants',
+        :'multiple_variants' => :'multiple_variants',
+        :'source_error_variants' => :'source_error_variants'
+      }
+    end
+
+    # Returns attribute mapping this model knows about
+    def self.acceptable_attribute_map
+      attribute_map
+    end
+
+    # Returns all the JSON keys this model knows about
+    def self.acceptable_attributes
+      acceptable_attribute_map.values
+    end
+
+    # Attribute type mapping.
+    def self.openapi_types
+      {
+        :'coverage_counts' => :'BiomarkersSampleScreening200ResponseContextCoverageCounts',
+        :'requested_positive_samples' => :'Integer',
+        :'zero_variants' => :'Array<Object>',
+        :'multiple_variants' => :'Array<String>',
+        :'source_error_variants' => :'Array<Object>'
+      }
+    end
+
+    # List of attributes with nullable: true
+    def self.openapi_nullable
+      Set.new([
+        :'requested_positive_samples',
+      ])
+    end
+
+    # Initializes the object
+    # @param [Hash] attributes Model attributes in the form of hash
+    def initialize(attributes = {})
+      if (!attributes.is_a?(Hash))
+        fail ArgumentError, "The input argument (attributes) must be a hash in `PharmaObservatory::BiomarkersSampleScreening200ResponseContext` initialize method"
+      end
+
+      # check to see if the attribute exists and convert string to symbol for hash key
+      acceptable_attribute_map = self.class.acceptable_attribute_map
+      attributes = attributes.each_with_object({}) { |(k, v), h|
+        if (!acceptable_attribute_map.key?(k.to_sym))
+          fail ArgumentError, "`#{k}` is not a valid attribute in `PharmaObservatory::BiomarkersSampleScreening200ResponseContext`. Please check the name to make sure it's valid. List of attributes: " + acceptable_attribute_map.keys.inspect
+        end
+        h[k.to_sym] = v
+      }
+
+      if attributes.key?(:'coverage_counts')
+        self.coverage_counts = attributes[:'coverage_counts']
+      else
+        self.coverage_counts = nil
+      end
+
+      if attributes.key?(:'requested_positive_samples')
+        self.requested_positive_samples = attributes[:'requested_positive_samples']
+      else
+        self.requested_positive_samples = nil
+      end
+
+      if attributes.key?(:'zero_variants')
+        if (value = attributes[:'zero_variants']).is_a?(Array)
+          self.zero_variants = value
+        end
+      else
+        self.zero_variants = nil
+      end
+
+      if attributes.key?(:'multiple_variants')
+        if (value = attributes[:'multiple_variants']).is_a?(Array)
+          self.multiple_variants = value
+        end
+      else
+        self.multiple_variants = nil
+      end
+
+      if attributes.key?(:'source_error_variants')
+        if (value = attributes[:'source_error_variants']).is_a?(Array)
+          self.source_error_variants = value
+        end
+      else
+        self.source_error_variants = nil
+      end
+    end
+
+    # Show invalid properties with the reasons. Usually used together with valid?
+    # @return Array for valid properties with the reasons
+    def list_invalid_properties
+      warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
+      invalid_properties = Array.new
+      if @coverage_counts.nil?
+        invalid_properties.push('invalid value for "coverage_counts", coverage_counts cannot be nil.')
+      end
+
+      if @zero_variants.nil?
+        invalid_properties.push('invalid value for "zero_variants", zero_variants cannot be nil.')
+      end
+
+      if @multiple_variants.nil?
+        invalid_properties.push('invalid value for "multiple_variants", multiple_variants cannot be nil.')
+      end
+
+      if @source_error_variants.nil?
+        invalid_properties.push('invalid value for "source_error_variants", source_error_variants cannot be nil.')
+      end
+
+      invalid_properties
+    end
+
+    # Check to see if the all the properties in the model are valid
+    # @return true if the model is valid
+    def valid?
+      warn '[DEPRECATED] the `valid?` method is obsolete'
+      return false if @coverage_counts.nil?
+      return false if @zero_variants.nil?
+      return false if @multiple_variants.nil?
+      return false if @source_error_variants.nil?
+      true
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] coverage_counts Value to be assigned
+    def coverage_counts=(coverage_counts)
+      if coverage_counts.nil?
+        fail ArgumentError, 'coverage_counts cannot be nil'
+      end
+
+      @coverage_counts = coverage_counts
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] zero_variants Value to be assigned
+    def zero_variants=(zero_variants)
+      if zero_variants.nil?
+        fail ArgumentError, 'zero_variants cannot be nil'
+      end
+
+      @zero_variants = zero_variants
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] multiple_variants Value to be assigned
+    def multiple_variants=(multiple_variants)
+      if multiple_variants.nil?
+        fail ArgumentError, 'multiple_variants cannot be nil'
+      end
+
+      @multiple_variants = multiple_variants
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] source_error_variants Value to be assigned
+    def source_error_variants=(source_error_variants)
+      if source_error_variants.nil?
+        fail ArgumentError, 'source_error_variants cannot be nil'
+      end
+
+      @source_error_variants = source_error_variants
+    end
+
+    # Checks equality by comparing each attribute.
+    # @param [Object] Object to be compared
+    def ==(o)
+      return true if self.equal?(o)
+      self.class == o.class &&
+          coverage_counts == o.coverage_counts &&
+          requested_positive_samples == o.requested_positive_samples &&
+          zero_variants == o.zero_variants &&
+          multiple_variants == o.multiple_variants &&
+          source_error_variants == o.source_error_variants
+    end
+
+    # @see the `==` method
+    # @param [Object] Object to be compared
+    def eql?(o)
+      self == o
+    end
+
+    # Calculates hash code according to all attributes.
+    # @return [Integer] Hash code
+    def hash
+      [coverage_counts, requested_positive_samples, zero_variants, multiple_variants, source_error_variants].hash
+    end
+
+    # Builds the object from hash
+    # @param [Hash] attributes Model attributes in the form of hash
+    # @return [Object] Returns the model itself
+    def self.build_from_hash(attributes)
+      return nil unless attributes.is_a?(Hash)
+      attributes = attributes.transform_keys(&:to_sym)
+      transformed_hash = {}
+      openapi_types.each_pair do |key, type|
+        if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = nil
+        elsif type =~ /\AArray<(.*)>/i
+          # check to ensure the input is an array given that the attribute
+          # is documented as an array but the input is not
+          if attributes[attribute_map[key]].is_a?(Array)
+            transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
+          end
+        elsif !attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
+        end
+      end
+      new(transformed_hash)
+    end
+
+    # Deserializes the data based on type
+    # @param string type Data type
+    # @param string value Value to be deserialized
+    # @return [Object] Deserialized data
+    def self._deserialize(type, value)
+      case type.to_sym
+      when :Time
+        Time.parse(value)
+      when :Date
+        Date.parse(value)
+      when :String
+        value.to_s
+      when :Integer
+        value.to_i
+      when :Float
+        value.to_f
+      when :Boolean
+        if value.to_s =~ /\A(true|t|yes|y|1)\z/i
+          true
+        else
+          false
+        end
+      when :Object
+        # generic object (usually a Hash), return directly
+        value
+      when /\AArray<(?<inner_type>.+)>\z/
+        inner_type = Regexp.last_match[:inner_type]
+        value.map { |v| _deserialize(inner_type, v) }
+      when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
+        k_type = Regexp.last_match[:k_type]
+        v_type = Regexp.last_match[:v_type]
+        {}.tap do |hash|
+          value.each do |k, v|
+            hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
+          end
+        end
+      else # model
+        # models (e.g. Pet) or oneOf
+        klass = PharmaObservatory.const_get(type)
+        klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
+      end
+    end
+
+    # Returns the string representation of the object
+    # @return [String] String presentation of the object
+    def to_s
+      to_hash.to_s
+    end
+
+    # to_body is an alias to to_hash (backward compatibility)
+    # @return [Hash] Returns the object in the form of hash
+    def to_body
+      to_hash
+    end
+
+    # Returns the object in the form of hash
+    # @return [Hash] Returns the object in the form of hash
+    def to_hash
+      hash = {}
+      self.class.attribute_map.each_pair do |attr, param|
+        value = self.send(attr)
+        if value.nil?
+          is_nullable = self.class.openapi_nullable.include?(attr)
+          next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
+        end
+
+        hash[param] = _to_hash(value)
+      end
+      hash
+    end
+
+    # Outputs non-array value in the form of hash
+    # For object, use to_hash. Otherwise, just return the value
+    # @param [Object] value Any valid value
+    # @return [Hash] Returns the value in the form of hash
+    def _to_hash(value)
+      if value.is_a?(Array)
+        value.compact.map { |v| _to_hash(v) }
+      elsif value.is_a?(Hash)
+        {}.tap do |hash|
+          value.each { |k, v| hash[k] = _to_hash(v) }
+        end
+      elsif value.respond_to? :to_hash
+        value.to_hash
+      else
+        value
+      end
+    end
+
+  end
+
+end

data/lib/pharmaobservatory/models/biomarkers_sample_screening200_response_context_coverage_counts.rb

@@ -0,0 +1,263 @@
+=begin
+#Pharma Observatory Public REST API
+
+#Read-only REST API over the Pharma Observatory biomedical data platform. Reference: https://pharmaobservatory.com/api-reference
+
+The version of the OpenAPI document: 1.0.0
+
+Generated by: https://openapi-generator.tech
+Generator version: 7.13.0
+
+=end
+
+require 'date'
+require 'time'
+
+module PharmaObservatory
+  class BiomarkersSampleScreening200ResponseContextCoverageCounts
+    attr_accessor :resolved_single_ssm
+
+    attr_accessor :multiple_exact_ssms
+
+    # Attribute mapping from ruby-style variable name to JSON key.
+    def self.attribute_map
+      {
+        :'resolved_single_ssm' => :'resolved_single_ssm',
+        :'multiple_exact_ssms' => :'multiple_exact_ssms'
+      }
+    end
+
+    # Returns attribute mapping this model knows about
+    def self.acceptable_attribute_map
+      attribute_map
+    end
+
+    # Returns all the JSON keys this model knows about
+    def self.acceptable_attributes
+      acceptable_attribute_map.values
+    end
+
+    # Attribute type mapping.
+    def self.openapi_types
+      {
+        :'resolved_single_ssm' => :'Integer',
+        :'multiple_exact_ssms' => :'Integer'
+      }
+    end
+
+    # List of attributes with nullable: true
+    def self.openapi_nullable
+      Set.new([
+      ])
+    end
+
+    # Initializes the object
+    # @param [Hash] attributes Model attributes in the form of hash
+    def initialize(attributes = {})
+      if (!attributes.is_a?(Hash))
+        fail ArgumentError, "The input argument (attributes) must be a hash in `PharmaObservatory::BiomarkersSampleScreening200ResponseContextCoverageCounts` initialize method"
+      end
+
+      # check to see if the attribute exists and convert string to symbol for hash key
+      acceptable_attribute_map = self.class.acceptable_attribute_map
+      attributes = attributes.each_with_object({}) { |(k, v), h|
+        if (!acceptable_attribute_map.key?(k.to_sym))
+          fail ArgumentError, "`#{k}` is not a valid attribute in `PharmaObservatory::BiomarkersSampleScreening200ResponseContextCoverageCounts`. Please check the name to make sure it's valid. List of attributes: " + acceptable_attribute_map.keys.inspect
+        end
+        h[k.to_sym] = v
+      }
+
+      if attributes.key?(:'resolved_single_ssm')
+        self.resolved_single_ssm = attributes[:'resolved_single_ssm']
+      else
+        self.resolved_single_ssm = nil
+      end
+
+      if attributes.key?(:'multiple_exact_ssms')
+        self.multiple_exact_ssms = attributes[:'multiple_exact_ssms']
+      else
+        self.multiple_exact_ssms = nil
+      end
+    end
+
+    # Show invalid properties with the reasons. Usually used together with valid?
+    # @return Array for valid properties with the reasons
+    def list_invalid_properties
+      warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
+      invalid_properties = Array.new
+      if @resolved_single_ssm.nil?
+        invalid_properties.push('invalid value for "resolved_single_ssm", resolved_single_ssm cannot be nil.')
+      end
+
+      if @multiple_exact_ssms.nil?
+        invalid_properties.push('invalid value for "multiple_exact_ssms", multiple_exact_ssms cannot be nil.')
+      end
+
+      invalid_properties
+    end
+
+    # Check to see if the all the properties in the model are valid
+    # @return true if the model is valid
+    def valid?
+      warn '[DEPRECATED] the `valid?` method is obsolete'
+      return false if @resolved_single_ssm.nil?
+      return false if @multiple_exact_ssms.nil?
+      true
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] resolved_single_ssm Value to be assigned
+    def resolved_single_ssm=(resolved_single_ssm)
+      if resolved_single_ssm.nil?
+        fail ArgumentError, 'resolved_single_ssm cannot be nil'
+      end
+
+      @resolved_single_ssm = resolved_single_ssm
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] multiple_exact_ssms Value to be assigned
+    def multiple_exact_ssms=(multiple_exact_ssms)
+      if multiple_exact_ssms.nil?
+        fail ArgumentError, 'multiple_exact_ssms cannot be nil'
+      end
+
+      @multiple_exact_ssms = multiple_exact_ssms
+    end
+
+    # Checks equality by comparing each attribute.
+    # @param [Object] Object to be compared
+    def ==(o)
+      return true if self.equal?(o)
+      self.class == o.class &&
+          resolved_single_ssm == o.resolved_single_ssm &&
+          multiple_exact_ssms == o.multiple_exact_ssms
+    end
+
+    # @see the `==` method
+    # @param [Object] Object to be compared
+    def eql?(o)
+      self == o
+    end
+
+    # Calculates hash code according to all attributes.
+    # @return [Integer] Hash code
+    def hash
+      [resolved_single_ssm, multiple_exact_ssms].hash
+    end
+
+    # Builds the object from hash
+    # @param [Hash] attributes Model attributes in the form of hash
+    # @return [Object] Returns the model itself
+    def self.build_from_hash(attributes)
+      return nil unless attributes.is_a?(Hash)
+      attributes = attributes.transform_keys(&:to_sym)
+      transformed_hash = {}
+      openapi_types.each_pair do |key, type|
+        if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = nil
+        elsif type =~ /\AArray<(.*)>/i
+          # check to ensure the input is an array given that the attribute
+          # is documented as an array but the input is not
+          if attributes[attribute_map[key]].is_a?(Array)
+            transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
+          end
+        elsif !attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
+        end
+      end
+      new(transformed_hash)
+    end
+
+    # Deserializes the data based on type
+    # @param string type Data type
+    # @param string value Value to be deserialized
+    # @return [Object] Deserialized data
+    def self._deserialize(type, value)
+      case type.to_sym
+      when :Time
+        Time.parse(value)
+      when :Date
+        Date.parse(value)
+      when :String
+        value.to_s
+      when :Integer
+        value.to_i
+      when :Float
+        value.to_f
+      when :Boolean
+        if value.to_s =~ /\A(true|t|yes|y|1)\z/i
+          true
+        else
+          false
+        end
+      when :Object
+        # generic object (usually a Hash), return directly
+        value
+      when /\AArray<(?<inner_type>.+)>\z/
+        inner_type = Regexp.last_match[:inner_type]
+        value.map { |v| _deserialize(inner_type, v) }
+      when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
+        k_type = Regexp.last_match[:k_type]
+        v_type = Regexp.last_match[:v_type]
+        {}.tap do |hash|
+          value.each do |k, v|
+            hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
+          end
+        end
+      else # model
+        # models (e.g. Pet) or oneOf
+        klass = PharmaObservatory.const_get(type)
+        klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
+      end
+    end
+
+    # Returns the string representation of the object
+    # @return [String] String presentation of the object
+    def to_s
+      to_hash.to_s
+    end
+
+    # to_body is an alias to to_hash (backward compatibility)
+    # @return [Hash] Returns the object in the form of hash
+    def to_body
+      to_hash
+    end
+
+    # Returns the object in the form of hash
+    # @return [Hash] Returns the object in the form of hash
+    def to_hash
+      hash = {}
+      self.class.attribute_map.each_pair do |attr, param|
+        value = self.send(attr)
+        if value.nil?
+          is_nullable = self.class.openapi_nullable.include?(attr)
+          next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
+        end
+
+        hash[param] = _to_hash(value)
+      end
+      hash
+    end
+
+    # Outputs non-array value in the form of hash
+    # For object, use to_hash. Otherwise, just return the value
+    # @param [Object] value Any valid value
+    # @return [Hash] Returns the value in the form of hash
+    def _to_hash(value)
+      if value.is_a?(Array)
+        value.compact.map { |v| _to_hash(v) }
+      elsif value.is_a?(Hash)
+        {}.tap do |hash|
+          value.each { |k, v| hash[k] = _to_hash(v) }
+        end
+      elsif value.respond_to? :to_hash
+        value.to_hash
+      else
+        value
+      end
+    end
+
+  end
+
+end