pharmaobservatory 0.1.0 → 0.1.2

data/lib/pharmaobservatory/models/biomarkers_sample_screening200_response_rows_inner.rb

@@ -0,0 +1,484 @@
+=begin
+#Pharma Observatory Public REST API
+
+#Read-only REST API over the Pharma Observatory biomedical data platform. Reference: https://pharmaobservatory.com/api-reference
+
+The version of the OpenAPI document: 1.0.0
+
+Generated by: https://openapi-generator.tech
+Generator version: 7.13.0
+
+=end
+
+require 'date'
+require 'time'
+
+module PharmaObservatory
+  class BiomarkersSampleScreening200ResponseRowsInner
+    attr_accessor :amino_acid_change
+
+    attr_accessor :gdc_project_id
+
+    attr_accessor :source_disease_types
+
+    attr_accessor :source_primary_sites
+
+    attr_accessor :affected_case_count
+
+    attr_accessor :ssm_profiled_case_count
+
+    attr_accessor :observed_frequency
+
+    attr_accessor :frequency_ci95_low
+
+    attr_accessor :frequency_ci95_high
+
+    attr_accessor :gdc_data_release
+
+    attr_accessor :reference_screens
+
+    # Attribute mapping from ruby-style variable name to JSON key.
+    def self.attribute_map
+      {
+        :'amino_acid_change' => :'amino_acid_change',
+        :'gdc_project_id' => :'gdc_project_id',
+        :'source_disease_types' => :'source_disease_types',
+        :'source_primary_sites' => :'source_primary_sites',
+        :'affected_case_count' => :'affected_case_count',
+        :'ssm_profiled_case_count' => :'ssm_profiled_case_count',
+        :'observed_frequency' => :'observed_frequency',
+        :'frequency_ci95_low' => :'frequency_ci95_low',
+        :'frequency_ci95_high' => :'frequency_ci95_high',
+        :'gdc_data_release' => :'gdc_data_release',
+        :'reference_screens' => :'reference_screens'
+      }
+    end
+
+    # Returns attribute mapping this model knows about
+    def self.acceptable_attribute_map
+      attribute_map
+    end
+
+    # Returns all the JSON keys this model knows about
+    def self.acceptable_attributes
+      acceptable_attribute_map.values
+    end
+
+    # Attribute type mapping.
+    def self.openapi_types
+      {
+        :'amino_acid_change' => :'String',
+        :'gdc_project_id' => :'String',
+        :'source_disease_types' => :'Array<String>',
+        :'source_primary_sites' => :'Array<String>',
+        :'affected_case_count' => :'Integer',
+        :'ssm_profiled_case_count' => :'Integer',
+        :'observed_frequency' => :'Float',
+        :'frequency_ci95_low' => :'Float',
+        :'frequency_ci95_high' => :'Float',
+        :'gdc_data_release' => :'String',
+        :'reference_screens' => :'BiomarkersSampleScreening200ResponseRowsInnerReferenceScreens'
+      }
+    end
+
+    # List of attributes with nullable: true
+    def self.openapi_nullable
+      Set.new([
+      ])
+    end
+
+    # Initializes the object
+    # @param [Hash] attributes Model attributes in the form of hash
+    def initialize(attributes = {})
+      if (!attributes.is_a?(Hash))
+        fail ArgumentError, "The input argument (attributes) must be a hash in `PharmaObservatory::BiomarkersSampleScreening200ResponseRowsInner` initialize method"
+      end
+
+      # check to see if the attribute exists and convert string to symbol for hash key
+      acceptable_attribute_map = self.class.acceptable_attribute_map
+      attributes = attributes.each_with_object({}) { |(k, v), h|
+        if (!acceptable_attribute_map.key?(k.to_sym))
+          fail ArgumentError, "`#{k}` is not a valid attribute in `PharmaObservatory::BiomarkersSampleScreening200ResponseRowsInner`. Please check the name to make sure it's valid. List of attributes: " + acceptable_attribute_map.keys.inspect
+        end
+        h[k.to_sym] = v
+      }
+
+      if attributes.key?(:'amino_acid_change')
+        self.amino_acid_change = attributes[:'amino_acid_change']
+      else
+        self.amino_acid_change = nil
+      end
+
+      if attributes.key?(:'gdc_project_id')
+        self.gdc_project_id = attributes[:'gdc_project_id']
+      else
+        self.gdc_project_id = nil
+      end
+
+      if attributes.key?(:'source_disease_types')
+        if (value = attributes[:'source_disease_types']).is_a?(Array)
+          self.source_disease_types = value
+        end
+      else
+        self.source_disease_types = nil
+      end
+
+      if attributes.key?(:'source_primary_sites')
+        if (value = attributes[:'source_primary_sites']).is_a?(Array)
+          self.source_primary_sites = value
+        end
+      else
+        self.source_primary_sites = nil
+      end
+
+      if attributes.key?(:'affected_case_count')
+        self.affected_case_count = attributes[:'affected_case_count']
+      else
+        self.affected_case_count = nil
+      end
+
+      if attributes.key?(:'ssm_profiled_case_count')
+        self.ssm_profiled_case_count = attributes[:'ssm_profiled_case_count']
+      else
+        self.ssm_profiled_case_count = nil
+      end
+
+      if attributes.key?(:'observed_frequency')
+        self.observed_frequency = attributes[:'observed_frequency']
+      else
+        self.observed_frequency = nil
+      end
+
+      if attributes.key?(:'frequency_ci95_low')
+        self.frequency_ci95_low = attributes[:'frequency_ci95_low']
+      else
+        self.frequency_ci95_low = nil
+      end
+
+      if attributes.key?(:'frequency_ci95_high')
+        self.frequency_ci95_high = attributes[:'frequency_ci95_high']
+      else
+        self.frequency_ci95_high = nil
+      end
+
+      if attributes.key?(:'gdc_data_release')
+        self.gdc_data_release = attributes[:'gdc_data_release']
+      else
+        self.gdc_data_release = nil
+      end
+
+      if attributes.key?(:'reference_screens')
+        self.reference_screens = attributes[:'reference_screens']
+      end
+    end
+
+    # Show invalid properties with the reasons. Usually used together with valid?
+    # @return Array for valid properties with the reasons
+    def list_invalid_properties
+      warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
+      invalid_properties = Array.new
+      if @amino_acid_change.nil?
+        invalid_properties.push('invalid value for "amino_acid_change", amino_acid_change cannot be nil.')
+      end
+
+      if @gdc_project_id.nil?
+        invalid_properties.push('invalid value for "gdc_project_id", gdc_project_id cannot be nil.')
+      end
+
+      if @source_disease_types.nil?
+        invalid_properties.push('invalid value for "source_disease_types", source_disease_types cannot be nil.')
+      end
+
+      if @source_primary_sites.nil?
+        invalid_properties.push('invalid value for "source_primary_sites", source_primary_sites cannot be nil.')
+      end
+
+      if @affected_case_count.nil?
+        invalid_properties.push('invalid value for "affected_case_count", affected_case_count cannot be nil.')
+      end
+
+      if @ssm_profiled_case_count.nil?
+        invalid_properties.push('invalid value for "ssm_profiled_case_count", ssm_profiled_case_count cannot be nil.')
+      end
+
+      if @observed_frequency.nil?
+        invalid_properties.push('invalid value for "observed_frequency", observed_frequency cannot be nil.')
+      end
+
+      if @frequency_ci95_low.nil?
+        invalid_properties.push('invalid value for "frequency_ci95_low", frequency_ci95_low cannot be nil.')
+      end
+
+      if @frequency_ci95_high.nil?
+        invalid_properties.push('invalid value for "frequency_ci95_high", frequency_ci95_high cannot be nil.')
+      end
+
+      if @gdc_data_release.nil?
+        invalid_properties.push('invalid value for "gdc_data_release", gdc_data_release cannot be nil.')
+      end
+
+      invalid_properties
+    end
+
+    # Check to see if the all the properties in the model are valid
+    # @return true if the model is valid
+    def valid?
+      warn '[DEPRECATED] the `valid?` method is obsolete'
+      return false if @amino_acid_change.nil?
+      return false if @gdc_project_id.nil?
+      return false if @source_disease_types.nil?
+      return false if @source_primary_sites.nil?
+      return false if @affected_case_count.nil?
+      return false if @ssm_profiled_case_count.nil?
+      return false if @observed_frequency.nil?
+      return false if @frequency_ci95_low.nil?
+      return false if @frequency_ci95_high.nil?
+      return false if @gdc_data_release.nil?
+      true
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] amino_acid_change Value to be assigned
+    def amino_acid_change=(amino_acid_change)
+      if amino_acid_change.nil?
+        fail ArgumentError, 'amino_acid_change cannot be nil'
+      end
+
+      @amino_acid_change = amino_acid_change
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] gdc_project_id Value to be assigned
+    def gdc_project_id=(gdc_project_id)
+      if gdc_project_id.nil?
+        fail ArgumentError, 'gdc_project_id cannot be nil'
+      end
+
+      @gdc_project_id = gdc_project_id
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] source_disease_types Value to be assigned
+    def source_disease_types=(source_disease_types)
+      if source_disease_types.nil?
+        fail ArgumentError, 'source_disease_types cannot be nil'
+      end
+
+      @source_disease_types = source_disease_types
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] source_primary_sites Value to be assigned
+    def source_primary_sites=(source_primary_sites)
+      if source_primary_sites.nil?
+        fail ArgumentError, 'source_primary_sites cannot be nil'
+      end
+
+      @source_primary_sites = source_primary_sites
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] affected_case_count Value to be assigned
+    def affected_case_count=(affected_case_count)
+      if affected_case_count.nil?
+        fail ArgumentError, 'affected_case_count cannot be nil'
+      end
+
+      @affected_case_count = affected_case_count
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] ssm_profiled_case_count Value to be assigned
+    def ssm_profiled_case_count=(ssm_profiled_case_count)
+      if ssm_profiled_case_count.nil?
+        fail ArgumentError, 'ssm_profiled_case_count cannot be nil'
+      end
+
+      @ssm_profiled_case_count = ssm_profiled_case_count
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] observed_frequency Value to be assigned
+    def observed_frequency=(observed_frequency)
+      if observed_frequency.nil?
+        fail ArgumentError, 'observed_frequency cannot be nil'
+      end
+
+      @observed_frequency = observed_frequency
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] frequency_ci95_low Value to be assigned
+    def frequency_ci95_low=(frequency_ci95_low)
+      if frequency_ci95_low.nil?
+        fail ArgumentError, 'frequency_ci95_low cannot be nil'
+      end
+
+      @frequency_ci95_low = frequency_ci95_low
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] frequency_ci95_high Value to be assigned
+    def frequency_ci95_high=(frequency_ci95_high)
+      if frequency_ci95_high.nil?
+        fail ArgumentError, 'frequency_ci95_high cannot be nil'
+      end
+
+      @frequency_ci95_high = frequency_ci95_high
+    end
+
+    # Custom attribute writer method with validation
+    # @param [Object] gdc_data_release Value to be assigned
+    def gdc_data_release=(gdc_data_release)
+      if gdc_data_release.nil?
+        fail ArgumentError, 'gdc_data_release cannot be nil'
+      end
+
+      @gdc_data_release = gdc_data_release
+    end
+
+    # Checks equality by comparing each attribute.
+    # @param [Object] Object to be compared
+    def ==(o)
+      return true if self.equal?(o)
+      self.class == o.class &&
+          amino_acid_change == o.amino_acid_change &&
+          gdc_project_id == o.gdc_project_id &&
+          source_disease_types == o.source_disease_types &&
+          source_primary_sites == o.source_primary_sites &&
+          affected_case_count == o.affected_case_count &&
+          ssm_profiled_case_count == o.ssm_profiled_case_count &&
+          observed_frequency == o.observed_frequency &&
+          frequency_ci95_low == o.frequency_ci95_low &&
+          frequency_ci95_high == o.frequency_ci95_high &&
+          gdc_data_release == o.gdc_data_release &&
+          reference_screens == o.reference_screens
+    end
+
+    # @see the `==` method
+    # @param [Object] Object to be compared
+    def eql?(o)
+      self == o
+    end
+
+    # Calculates hash code according to all attributes.
+    # @return [Integer] Hash code
+    def hash
+      [amino_acid_change, gdc_project_id, source_disease_types, source_primary_sites, affected_case_count, ssm_profiled_case_count, observed_frequency, frequency_ci95_low, frequency_ci95_high, gdc_data_release, reference_screens].hash
+    end
+
+    # Builds the object from hash
+    # @param [Hash] attributes Model attributes in the form of hash
+    # @return [Object] Returns the model itself
+    def self.build_from_hash(attributes)
+      return nil unless attributes.is_a?(Hash)
+      attributes = attributes.transform_keys(&:to_sym)
+      transformed_hash = {}
+      openapi_types.each_pair do |key, type|
+        if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = nil
+        elsif type =~ /\AArray<(.*)>/i
+          # check to ensure the input is an array given that the attribute
+          # is documented as an array but the input is not
+          if attributes[attribute_map[key]].is_a?(Array)
+            transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
+          end
+        elsif !attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
+        end
+      end
+      new(transformed_hash)
+    end
+
+    # Deserializes the data based on type
+    # @param string type Data type
+    # @param string value Value to be deserialized
+    # @return [Object] Deserialized data
+    def self._deserialize(type, value)
+      case type.to_sym
+      when :Time
+        Time.parse(value)
+      when :Date
+        Date.parse(value)
+      when :String
+        value.to_s
+      when :Integer
+        value.to_i
+      when :Float
+        value.to_f
+      when :Boolean
+        if value.to_s =~ /\A(true|t|yes|y|1)\z/i
+          true
+        else
+          false
+        end
+      when :Object
+        # generic object (usually a Hash), return directly
+        value
+      when /\AArray<(?<inner_type>.+)>\z/
+        inner_type = Regexp.last_match[:inner_type]
+        value.map { |v| _deserialize(inner_type, v) }
+      when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
+        k_type = Regexp.last_match[:k_type]
+        v_type = Regexp.last_match[:v_type]
+        {}.tap do |hash|
+          value.each do |k, v|
+            hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
+          end
+        end
+      else # model
+        # models (e.g. Pet) or oneOf
+        klass = PharmaObservatory.const_get(type)
+        klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
+      end
+    end
+
+    # Returns the string representation of the object
+    # @return [String] String presentation of the object
+    def to_s
+      to_hash.to_s
+    end
+
+    # to_body is an alias to to_hash (backward compatibility)
+    # @return [Hash] Returns the object in the form of hash
+    def to_body
+      to_hash
+    end
+
+    # Returns the object in the form of hash
+    # @return [Hash] Returns the object in the form of hash
+    def to_hash
+      hash = {}
+      self.class.attribute_map.each_pair do |attr, param|
+        value = self.send(attr)
+        if value.nil?
+          is_nullable = self.class.openapi_nullable.include?(attr)
+          next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
+        end
+
+        hash[param] = _to_hash(value)
+      end
+      hash
+    end
+
+    # Outputs non-array value in the form of hash
+    # For object, use to_hash. Otherwise, just return the value
+    # @param [Object] value Any valid value
+    # @return [Hash] Returns the value in the form of hash
+    def _to_hash(value)
+      if value.is_a?(Array)
+        value.compact.map { |v| _to_hash(v) }
+      elsif value.is_a?(Hash)
+        {}.tap do |hash|
+          value.each { |k, v| hash[k] = _to_hash(v) }
+        end
+      elsif value.respond_to? :to_hash
+        value.to_hash
+      else
+        value
+      end
+    end
+
+  end
+
+end