mdarray 0.4.3.pre-java → 0.5.0-java
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- data/README.md +82 -14
- data/Rakefile +8 -2
- data/doc/BinaryOperator.html +227 -0
- data/doc/BitwiseOperators.html +135 -0
- data/doc/BooleanFunctions.html +135 -0
- data/doc/BooleanMDArray.html +193 -0
- data/doc/ByteMDArray.html +271 -0
- data/doc/Colt.html +269 -0
- data/doc/ComparisonOperators.html +135 -0
- data/doc/Const.html +490 -0
- data/doc/Csv.html +589 -0
- data/doc/DDescriptive.html +4373 -0
- data/doc/DoubleMDArray.html +555 -0
- data/doc/DoubleStatList.html +256 -0
- data/doc/FastBinaryOperator.html +743 -0
- data/doc/FastBoolean.html +512 -0
- data/doc/FastUnaryOperator.html +583 -0
- data/doc/FloatMDArray.html +237 -0
- data/doc/FunctionCreation.html +520 -0
- data/doc/FunctionMap.html +813 -0
- data/doc/GenericFunctions.html +135 -0
- data/doc/IntMDArray.html +259 -0
- data/doc/LongMDArray.html +257 -0
- data/doc/MDArray.html +9639 -0
- data/doc/MDArray/Counter.html +2767 -0
- data/doc/MDArray/IteratorFast.html +872 -0
- data/doc/MDArray/IteratorFastBoolean.html +384 -0
- data/doc/MDArray/IteratorFastByte.html +373 -0
- data/doc/MDArray/IteratorFastChar.html +384 -0
- data/doc/MDArray/IteratorFastDouble.html +384 -0
- data/doc/MDArray/IteratorFastFloat.html +384 -0
- data/doc/MDArray/IteratorFastInt.html +384 -0
- data/doc/MDArray/IteratorFastLong.html +384 -0
- data/doc/MDArray/IteratorFastShort.html +384 -0
- data/doc/MDArrayTest.html +125 -0
- data/doc/NonNumericalMDArray.html +177 -0
- data/doc/NumericFunctions.html +297 -0
- data/doc/NumericalMDArray.html +278 -0
- data/doc/Operator.html +826 -0
- data/doc/Proc.html +1097 -0
- data/doc/RubyBinaryOperator.html +526 -0
- data/doc/RubyFunctions.html +232 -0
- data/doc/RubyMath.html +135 -0
- data/doc/RubyStats.html +135 -0
- data/doc/RubyUnaryOperator.html +510 -0
- data/doc/ShortMDArray.html +267 -0
- data/doc/StatList.html +1176 -0
- data/doc/StringMDArray.html +181 -0
- data/doc/StructureMDArray.html +181 -0
- data/doc/UnaryOperator.html +227 -0
- data/doc/UserFunction.html +297 -0
- data/doc/_index.html +467 -0
- data/doc/class_list.html +53 -0
- data/doc/css/common.css +1 -0
- data/doc/css/full_list.css +57 -0
- data/doc/css/style.css +338 -0
- data/doc/file.README.html +173 -0
- data/doc/file_list.html +55 -0
- data/doc/frames.html +28 -0
- data/doc/index.html +173 -0
- data/doc/js/app.js +214 -0
- data/doc/js/full_list.js +173 -0
- data/doc/js/jquery.js +4 -0
- data/doc/method_list.html +2524 -0
- data/doc/top-level-namespace.html +114 -0
- data/lib/colt/colt.rb +56 -0
- data/lib/colt/colt_mdarray.rb +95 -0
- data/lib/colt/double_descriptive.rb +636 -0
- data/lib/colt/probability.rb +12 -0
- data/lib/colt/stat_list.rb +192 -0
- data/lib/env.rb +5 -1
- data/lib/mdarray.rb +5 -0
- data/lib/mdarray/access.rb +2 -2
- data/lib/mdarray/creation.rb +34 -19
- data/lib/mdarray/csv.rb +61 -0
- data/lib/mdarray/fast_operators.rb +241 -0
- data/lib/mdarray/operators.rb +18 -0
- data/lib/mdarray/ruby_operators.rb +2 -18
- data/lib/mdarray/ruby_stats.rb +1 -1
- data/lib/mdarray/views.rb +8 -8
- data/target/helper.jar +0 -0
- data/test/colt/VALE3.csv +3437 -0
- data/test/colt/VALE3.xlsx +0 -0
- data/test/colt/VALE3_short-err.csv +20 -0
- data/test/colt/VALE3_short.csv +20 -0
- data/test/colt/VALE3_short.xlsx +0 -0
- data/test/colt/test_complete.rb +25 -0
- data/test/colt/test_stat_list.rb +128 -0
- data/test/colt/test_statistics.rb +114 -0
- data/test/complete.rb +25 -0
- data/test/env.rb +54 -30
- data/test/{arithmetic_casting.rb → mdarray/arithmetic_casting.rb} +0 -0
- data/test/{test_access.rb → mdarray/test_access.rb} +0 -0
- data/test/{test_boolean.rb → mdarray/test_boolean.rb} +0 -2
- data/test/{test_comparison.rb → mdarray/test_comparison.rb} +0 -0
- data/test/{test_complete.rb → mdarray/test_complete.rb} +3 -14
- data/test/{test_counter.rb → mdarray/test_counter.rb} +0 -0
- data/test/{test_creation.rb → mdarray/test_creation.rb} +0 -0
- data/test/{test_error.rb → mdarray/test_error.rb} +8 -5
- data/test/{test_operator.rb → mdarray/test_operator.rb} +6 -2
- data/test/{test_speed.rb → mdarray/test_performance.rb} +74 -39
- data/test/{test_printing.rb → mdarray/test_printing.rb} +0 -1
- data/test/{test_shape.rb → mdarray/test_shape.rb} +0 -0
- data/test/mdarray/test_statistics.rb +80 -0
- data/test/{test_trigonometry.rb → mdarray/test_trigonometry.rb} +0 -0
- data/test/{test_views.rb → mdarray/test_views.rb} +0 -0
- data/vendor/parallelcolt-0.10.0.jar +0 -0
- data/version.rb +1 -1
- metadata +122 -39
- data/test/test_lazy.rb +0 -52
- data/test/test_statistics.rb +0 -38
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<p class="inherited"><span class='object_link'><a href="RubyFunctions.html#ruby_binary_function-instance_method" title="RubyFunctions#ruby_binary_function (method)">#ruby_binary_function</a></span>, <span class='object_link'><a href="RubyFunctions.html#ruby_unary_function-instance_method" title="RubyFunctions#ruby_unary_function (method)">#ruby_unary_function</a></span></p>
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<p class="inherited"><span class='object_link'><a href="MDArray.html#%5B%5D-instance_method" title="MDArray#[] (method)">#[]</a></span>, <span class='object_link'><a href="MDArray.html#%5B%5D%3D-instance_method" title="MDArray#[]= (method)">#[]=</a></span>, <span class='object_link'><a href="MDArray.html#apply_over_axes-instance_method" title="MDArray#apply_over_axes (method)">#apply_over_axes</a></span>, <span class='object_link'><a href="MDArray.html#arange-class_method" title="MDArray.arange (method)">arange</a></span>, <span class='object_link'><a href="MDArray.html#boolean-class_method" title="MDArray.boolean (method)">boolean</a></span>, <span class='object_link'><a href="MDArray.html#build-class_method" title="MDArray.build (method)">build</a></span>, <span class='object_link'><a href="MDArray.html#build_from_nc_array-class_method" title="MDArray.build_from_nc_array (method)">build_from_nc_array</a></span>, <span class='object_link'><a href="MDArray.html#byte-class_method" title="MDArray.byte (method)">byte</a></span>, <span class='object_link'><a href="MDArray.html#char-class_method" title="MDArray.char (method)">char</a></span>, <span class='object_link'><a href="MDArray.html#compatible-instance_method" title="MDArray#compatible (method)">#compatible</a></span>, <span class='object_link'><a href="MDArray.html#copy-instance_method" title="MDArray#copy (method)">#copy</a></span>, <span class='object_link'><a href="MDArray.html#csv1d-instance_method" title="MDArray#csv1d (method)">#csv1d</a></span>, <span class='object_link'><a href="MDArray.html#double-class_method" title="MDArray.double (method)">double</a></span>, <span class='object_link'><a href="MDArray.html#dtype-instance_method" title="MDArray#dtype (method)">#dtype</a></span>, <span class='object_link'><a href="MDArray.html#each-instance_method" title="MDArray#each (method)">#each</a></span>, <span class='object_link'><a href="MDArray.html#each_cont-instance_method" title="MDArray#each_cont (method)">#each_cont</a></span>, <span class='object_link'><a href="MDArray.html#each_slice-instance_method" title="MDArray#each_slice (method)">#each_slice</a></span>, <span class='object_link'><a href="MDArray.html#each_with_counter-instance_method" title="MDArray#each_with_counter (method)">#each_with_counter</a></span>, <span class='object_link'><a href="MDArray.html#float-class_method" title="MDArray.float (method)">float</a></span>, <span class='object_link'><a href="MDArray.html#fromfunction-class_method" title="MDArray.fromfunction (method)">fromfunction</a></span>, <span class='object_link'><a href="MDArray.html#function_map_to_csv-class_method" title="MDArray.function_map_to_csv (method)">function_map_to_csv</a></span>, <span class='object_link'><a href="MDArray.html#get-instance_method" title="MDArray#get (method)">#get</a></span>, <span class='object_link'><a href="MDArray.html#get_binary_op-instance_method" title="MDArray#get_binary_op (method)">#get_binary_op</a></span>, <span class='object_link'><a href="MDArray.html#get_counter-instance_method" title="MDArray#get_counter (method)">#get_counter</a></span>, <span class='object_link'><a href="MDArray.html#get_current_index-instance_method" title="MDArray#get_current_index (method)">#get_current_index</a></span>, <span class='object_link'><a href="MDArray.html#get_element_type-instance_method" title="MDArray#get_element_type (method)">#get_element_type</a></span>, <span class='object_link'><a href="MDArray.html#get_index-instance_method" title="MDArray#get_index (method)">#get_index</a></span>, <span class='object_link'><a href="MDArray.html#get_iterator_fast-instance_method" title="MDArray#get_iterator_fast (method)">#get_iterator_fast</a></span>, <span class='object_link'><a href="MDArray.html#get_next-instance_method" title="MDArray#get_next (method)">#get_next</a></span>, <span class='object_link'><a href="MDArray.html#get_rank-instance_method" title="MDArray#get_rank (method)">#get_rank</a></span>, <span class='object_link'><a href="MDArray.html#get_shape-instance_method" title="MDArray#get_shape (method)">#get_shape</a></span>, <span class='object_link'><a href="MDArray.html#get_size-instance_method" title="MDArray#get_size (method)">#get_size</a></span>, <span class='object_link'><a href="MDArray.html#get_unary_op-instance_method" title="MDArray#get_unary_op (method)">#get_unary_op</a></span>, <span class='object_link'><a href="MDArray.html#init_with-class_method" title="MDArray.init_with (method)">init_with</a></span>, <span class='object_link'><a href="MDArray.html#initialize-instance_method" title="MDArray#initialize (method)">#initialize</a></span>, <span class='object_link'><a href="MDArray.html#int-class_method" title="MDArray.int (method)">int</a></span>, <span class='object_link'><a href="MDArray.html#linspace-class_method" title="MDArray.linspace (method)">linspace</a></span>, <span class='object_link'><a href="MDArray.html#long-class_method" title="MDArray.long (method)">long</a></span>, <span class='object_link'><a href="MDArray.html#make_binary_op-class_method" title="MDArray.make_binary_op (method)">make_binary_op</a></span>, <span class='object_link'><a href="MDArray.html#make_unary_op-class_method" title="MDArray.make_unary_op (method)">make_unary_op</a></span>, <span class='object_link'><a href="MDArray.html#ndenumerate-instance_method" title="MDArray#ndenumerate (method)">#ndenumerate</a></span>, <span class='object_link'><a href="MDArray.html#ndim-instance_method" title="MDArray#ndim (method)">#ndim</a></span>, <span class='object_link'><a href="MDArray.html#next-instance_method" title="MDArray#next (method)">#next</a></span>, <span class='object_link'><a href="MDArray.html#ones-class_method" title="MDArray.ones (method)">ones</a></span>, <span class='object_link'><a href="MDArray.html#permute-instance_method" title="MDArray#permute (method)">#permute</a></span>, <span class='object_link'><a href="MDArray.html#print-instance_method" title="MDArray#print (method)">#print</a></span>, <span class='object_link'><a href="MDArray.html#print1d-instance_method" title="MDArray#print1d (method)">#print1d</a></span>, <span class='object_link'><a href="MDArray.html#print_function_map-class_method" title="MDArray.print_function_map (method)">print_function_map</a></span>, <span class='object_link'><a href="MDArray.html#printing_defaults-instance_method" title="MDArray#printing_defaults (method)">#printing_defaults</a></span>, <span class='object_link'><a href="MDArray.html#rank-instance_method" title="MDArray#rank (method)">#rank</a></span>, <span class='object_link'><a href="MDArray.html#reduce-instance_method" title="MDArray#reduce (method)">#reduce</a></span>, <span class='object_link'><a href="MDArray.html#register_function-class_method" title="MDArray.register_function (method)">register_function</a></span>, <span class='object_link'><a href="MDArray.html#reset_traversal-instance_method" title="MDArray#reset_traversal (method)">#reset_traversal</a></span>, <span class='object_link'><a href="MDArray.html#reshape-instance_method" title="MDArray#reshape (method)">#reshape</a></span>, <span class='object_link'><a href="MDArray.html#reshape%21-instance_method" title="MDArray#reshape! (method)">#reshape!</a></span>, <span class='object_link'><a href="MDArray.html#section-instance_method" title="MDArray#section (method)">#section</a></span>, <span class='object_link'><a href="MDArray.html#section%3F-instance_method" title="MDArray#section? (method)">#section?</a></span>, <span class='object_link'><a href="MDArray.html#section_with_stride-instance_method" title="MDArray#section_with_stride (method)">#section_with_stride</a></span>, <span class='object_link'><a href="MDArray.html#select_function-class_method" title="MDArray.select_function (method)">select_function</a></span>, <span class='object_link'><a href="MDArray.html#set-instance_method" title="MDArray#set (method)">#set</a></span>, <span class='object_link'><a href="MDArray.html#set_next-instance_method" title="MDArray#set_next (method)">#set_next</a></span>, <span class='object_link'><a href="MDArray.html#shape-instance_method" title="MDArray#shape (method)">#shape</a></span>, <span class='object_link'><a href="MDArray.html#short-class_method" title="MDArray.short (method)">short</a></span>, <span class='object_link'><a href="MDArray.html#size-instance_method" title="MDArray#size (method)">#size</a></span>, <span class='object_link'><a href="MDArray.html#slice-instance_method" title="MDArray#slice (method)">#slice</a></span>, <span class='object_link'><a href="MDArray.html#string-class_method" title="MDArray.string (method)">string</a></span>, <span class='object_link'><a href="MDArray.html#structure-class_method" title="MDArray.structure (method)">structure</a></span>, <span class='object_link'><a href="MDArray.html#to_csv-instance_method" title="MDArray#to_csv (method)">#to_csv</a></span>, <span class='object_link'><a href="MDArray.html#to_s-instance_method" title="MDArray#to_s (method)">#to_s</a></span>, <span class='object_link'><a href="MDArray.html#to_string-instance_method" title="MDArray#to_string (method)">#to_string</a></span>, <span class='object_link'><a href="MDArray.html#transpose-instance_method" title="MDArray#transpose (method)">#transpose</a></span>, <span class='object_link'><a href="MDArray.html#typed_arange-class_method" title="MDArray.typed_arange (method)">typed_arange</a></span>, <span class='object_link'><a href="MDArray.html#upcast-class_method" title="MDArray.upcast (method)">upcast</a></span></p>
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<pre class="code"><span class="info file"># File 'lib/colt/colt_mdarray.rb', line 30</span>
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<span class='symbol val'>:geometric_mean</span><span class='comma token'>,</span> <span class='symbol val'>:harmonic_mean</span><span class='comma token'>,</span> <span class='symbol val'>:kurtosis</span><span class='comma token'>,</span> <span class='symbol val'>:lag1</span><span class='comma token'>,</span> <span class='symbol val'>:list_size</span><span class='comma token'>,</span> <span class='symbol val'>:max</span><span class='comma token'>,</span> <span class='symbol val'>:mean</span><span class='comma token'>,</span>
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<span class='symbol val'>:mean_deviation</span><span class='comma token'>,</span> <span class='symbol val'>:median</span><span class='comma token'>,</span> <span class='symbol val'>:min</span><span class='comma token'>,</span> <span class='symbol val'>:moment</span><span class='comma token'>,</span> <span class='symbol val'>:moment3</span><span class='comma token'>,</span> <span class='symbol val'>:moment4</span><span class='comma token'>,</span> <span class='symbol val'>:pooled_mean</span><span class='comma token'>,</span>
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<span class='symbol val'>:pooled_variance</span><span class='comma token'>,</span> <span class='symbol val'>:product</span><span class='comma token'>,</span> <span class='symbol val'>:quantile</span><span class='comma token'>,</span> <span class='symbol val'>:quantile_inverse</span><span class='comma token'>,</span> <span class='symbol val'>:quantiles</span><span class='comma token'>,</span>
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<span class='symbol val'>:rank_interpolated</span><span class='comma token'>,</span> <span class='symbol val'>:rms</span><span class='comma token'>,</span> <span class='symbol val'>:sample_covariance</span><span class='comma token'>,</span> <span class='symbol val'>:sample_kurtosis</span><span class='comma token'>,</span>
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<span class='symbol val'>:sample_kurtosis_standard_error</span><span class='comma token'>,</span>
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<span class='symbol val'>:sample_skew</span><span class='comma token'>,</span> <span class='symbol val'>:sample_skew_standard_error</span><span class='comma token'>,</span> <span class='symbol val'>:sample_standard_deviation</span><span class='comma token'>,</span>
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<span class='symbol val'>:sample_variance</span><span class='comma token'>,</span> <span class='symbol val'>:sample_weighted_variance</span><span class='comma token'>,</span> <span class='symbol val'>:skew</span><span class='comma token'>,</span> <span class='symbol val'>:split</span><span class='comma token'>,</span>
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<span class='symbol val'>:standard_deviation</span><span class='comma token'>,</span> <span class='symbol val'>:standard_error</span><span class='comma token'>,</span> <span class='symbol val'>:sum</span><span class='comma token'>,</span>
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<span class='symbol val'>:sum_of_inversions</span><span class='comma token'>,</span> <span class='symbol val'>:sum_of_logarithms</span><span class='comma token'>,</span> <span class='symbol val'>:sum_of_powers</span><span class='comma token'>,</span>
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<span class='symbol val'>:sum_of_power_deviations</span><span class='comma token'>,</span> <span class='symbol val'>:sum_of_squares</span><span class='comma token'>,</span> <span class='symbol val'>:sum_of_squared_deviations</span><span class='comma token'>,</span>
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<span class='symbol val'>:trimmed_mean</span><span class='comma token'>,</span>
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<span class='symbol val'>:variance</span><span class='comma token'>,</span> <span class='symbol val'>:weighted_mean</span><span class='comma token'>,</span> <span class='symbol val'>:weighted_rms</span><span class='comma token'>,</span> <span class='symbol val'>:weighted_sums</span><span class='comma token'>,</span> <span class='symbol val'>:winsorized_mean</span><span class='rbrack token'>]</span>
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<span class='comment val'>=begin
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# undefine all methods. Need for now, on furture versions we should be able to
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# have many ways of executing the same method, so there should be no need to
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# undef a method.
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stats.each do |method|
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remove_method(:max)
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end
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=end
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</span>
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<span class='comment val'># define all statistics methods from colt</span>
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<span class='rubyid_stats identifier id'>stats</span><span class='dot token'>.</span><span class='rubyid_each identifier id'>each</span> <span class='rubyid_do do kw'>do</span> <span class='bitor op'>|</span><span class='rubyid_method identifier id'>method</span><span class='bitor op'>|</span>
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<span class='rubyid_define_method identifier id'>define_method</span><span class='lparen token'>(</span><span class='rubyid_method identifier id'>method</span><span class='rparen token'>)</span> <span class='lbrace token'>{</span> <span class='bitor op'>|</span><span class='mult op'>*</span><span class='rubyid_args identifier id'>args</span><span class='bitor op'>|</span> <span class='rubyid_@stat_list ivar id'>@stat_list</span><span class='dot token'>.</span><span class='rubyid_send identifier id'>send</span><span class='lparen token'>(</span><span class='rubyid_method identifier id'>method</span><span class='comma token'>,</span> <span class='mult op'>*</span><span class='rubyid_args identifier id'>args</span><span class='rparen token'>)</span> <span class='rbrace token'>}</span>
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<span class='rubyid_end end kw'>end</span>
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<span class='rubyid_define_method identifier id'>define_method</span><span class='lparen token'>(</span><span class='symbol val'>:standardize</span><span class='rparen token'>)</span> <span class='rubyid_do do kw'>do</span> <span class='bitor op'>|</span><span class='mult op'>*</span><span class='rubyid_args identifier id'>args</span><span class='bitor op'>|</span>
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475
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<span class='rubyid_@stat_list ivar id'>@stat_list</span><span class='dot token'>.</span><span class='rubyid_standardize! fid id'>standardize!</span><span class='lparen token'>(</span><span class='mult op'>*</span><span class='rubyid_args identifier id'>args</span><span class='rparen token'>)</span>
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<span class='rubyid_@stat_list ivar id'>@stat_list</span><span class='dot token'>.</span><span class='rubyid_elements identifier id'>elements</span>
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<span class='rubyid_end end kw'>end</span>
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<span class='rubyid_end end kw'>end</span>
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</pre>
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</td>
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</tr>
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</table>
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</div>
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</div>
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487
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<div id="instance_method_details" class="method_details_list">
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489
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<h2>Instance Method Details</h2>
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490
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491
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<div class="method_details first">
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<h3 class="signature first" id="reset_statistics-instance_method">
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494
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495
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- (<tt>Object</tt>) <strong>reset_statistics</strong>
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</h3><div class="docstring">
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<div class="discussion">
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<hr style="height: 10px">
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504
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505
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<p>Converts the mdarray to an DoubleArrayList usable by Parallel Colt</p>
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<hr style="height: 10px">
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</div>
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</div>
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<div class="tags">
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</div><table class="source_code">
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<td>
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<pre class="lines">
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42</pre>
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</td>
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<td>
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<pre class="code"><span class="info file"># File 'lib/colt/colt_mdarray.rb', line 36</span>
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<span class='rubyid_def def kw'>def</span> <span class='rubyid_reset_statistics identifier id'>reset_statistics</span>
|
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532
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+
|
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533
|
+
<span class='rubyid_base_array identifier id'>base_array</span> <span class='assign token'>=</span> <span class='rubyid_@nc_array ivar id'>@nc_array</span><span class='dot token'>.</span><span class='rubyid_get1DJavaArray identifier id'>get1DJavaArray</span><span class='lparen token'>(</span><span class='rubyid_Java constant id'>Java</span><span class='colon2 op'>::</span><span class='rubyid_double identifier id'>double</span><span class='dot token'>.</span><span class='rubyid_java_class identifier id'>java_class</span><span class='rparen token'>)</span>
|
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<span class='rubyid_double_array_list identifier id'>double_array_list</span> <span class='assign token'>=</span> <span class='rubyid_Java constant id'>Java</span><span class='colon2 op'>::</span><span class='rubyid_CernColtListTdouble constant id'>CernColtListTdouble</span><span class='colon2 op'>::</span><span class='rubyid_DoubleArrayList constant id'>DoubleArrayList</span><span class='dot token'>.</span><span class='rubyid_new identifier id'>new</span><span class='lparen token'>(</span><span class='rubyid_base_array identifier id'>base_array</span><span class='rparen token'>)</span>
|
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<span class='rubyid_@stat_list ivar id'>@stat_list</span> <span class='assign token'>=</span> <span class='rubyid_DoubleStatList constant id'>DoubleStatList</span><span class='dot token'>.</span><span class='rubyid_new identifier id'>new</span><span class='lparen token'>(</span><span class='rubyid_double_array_list identifier id'>double_array_list</span><span class='rparen token'>)</span>
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|
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|
+
<span class='rubyid_end end kw'>end</span>
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</pre>
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<div id="footer">
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Generated on Thu May 16 12:48:38 2013 by
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<a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
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0.8.5.2 (ruby-1.9.3).
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