mdarray 0.4.3.pre-java → 0.5.0-java

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  1. data/README.md +82 -14
  2. data/Rakefile +8 -2
  3. data/doc/BinaryOperator.html +227 -0
  4. data/doc/BitwiseOperators.html +135 -0
  5. data/doc/BooleanFunctions.html +135 -0
  6. data/doc/BooleanMDArray.html +193 -0
  7. data/doc/ByteMDArray.html +271 -0
  8. data/doc/Colt.html +269 -0
  9. data/doc/ComparisonOperators.html +135 -0
  10. data/doc/Const.html +490 -0
  11. data/doc/Csv.html +589 -0
  12. data/doc/DDescriptive.html +4373 -0
  13. data/doc/DoubleMDArray.html +555 -0
  14. data/doc/DoubleStatList.html +256 -0
  15. data/doc/FastBinaryOperator.html +743 -0
  16. data/doc/FastBoolean.html +512 -0
  17. data/doc/FastUnaryOperator.html +583 -0
  18. data/doc/FloatMDArray.html +237 -0
  19. data/doc/FunctionCreation.html +520 -0
  20. data/doc/FunctionMap.html +813 -0
  21. data/doc/GenericFunctions.html +135 -0
  22. data/doc/IntMDArray.html +259 -0
  23. data/doc/LongMDArray.html +257 -0
  24. data/doc/MDArray.html +9639 -0
  25. data/doc/MDArray/Counter.html +2767 -0
  26. data/doc/MDArray/IteratorFast.html +872 -0
  27. data/doc/MDArray/IteratorFastBoolean.html +384 -0
  28. data/doc/MDArray/IteratorFastByte.html +373 -0
  29. data/doc/MDArray/IteratorFastChar.html +384 -0
  30. data/doc/MDArray/IteratorFastDouble.html +384 -0
  31. data/doc/MDArray/IteratorFastFloat.html +384 -0
  32. data/doc/MDArray/IteratorFastInt.html +384 -0
  33. data/doc/MDArray/IteratorFastLong.html +384 -0
  34. data/doc/MDArray/IteratorFastShort.html +384 -0
  35. data/doc/MDArrayTest.html +125 -0
  36. data/doc/NonNumericalMDArray.html +177 -0
  37. data/doc/NumericFunctions.html +297 -0
  38. data/doc/NumericalMDArray.html +278 -0
  39. data/doc/Operator.html +826 -0
  40. data/doc/Proc.html +1097 -0
  41. data/doc/RubyBinaryOperator.html +526 -0
  42. data/doc/RubyFunctions.html +232 -0
  43. data/doc/RubyMath.html +135 -0
  44. data/doc/RubyStats.html +135 -0
  45. data/doc/RubyUnaryOperator.html +510 -0
  46. data/doc/ShortMDArray.html +267 -0
  47. data/doc/StatList.html +1176 -0
  48. data/doc/StringMDArray.html +181 -0
  49. data/doc/StructureMDArray.html +181 -0
  50. data/doc/UnaryOperator.html +227 -0
  51. data/doc/UserFunction.html +297 -0
  52. data/doc/_index.html +467 -0
  53. data/doc/class_list.html +53 -0
  54. data/doc/css/common.css +1 -0
  55. data/doc/css/full_list.css +57 -0
  56. data/doc/css/style.css +338 -0
  57. data/doc/file.README.html +173 -0
  58. data/doc/file_list.html +55 -0
  59. data/doc/frames.html +28 -0
  60. data/doc/index.html +173 -0
  61. data/doc/js/app.js +214 -0
  62. data/doc/js/full_list.js +173 -0
  63. data/doc/js/jquery.js +4 -0
  64. data/doc/method_list.html +2524 -0
  65. data/doc/top-level-namespace.html +114 -0
  66. data/lib/colt/colt.rb +56 -0
  67. data/lib/colt/colt_mdarray.rb +95 -0
  68. data/lib/colt/double_descriptive.rb +636 -0
  69. data/lib/colt/probability.rb +12 -0
  70. data/lib/colt/stat_list.rb +192 -0
  71. data/lib/env.rb +5 -1
  72. data/lib/mdarray.rb +5 -0
  73. data/lib/mdarray/access.rb +2 -2
  74. data/lib/mdarray/creation.rb +34 -19
  75. data/lib/mdarray/csv.rb +61 -0
  76. data/lib/mdarray/fast_operators.rb +241 -0
  77. data/lib/mdarray/operators.rb +18 -0
  78. data/lib/mdarray/ruby_operators.rb +2 -18
  79. data/lib/mdarray/ruby_stats.rb +1 -1
  80. data/lib/mdarray/views.rb +8 -8
  81. data/target/helper.jar +0 -0
  82. data/test/colt/VALE3.csv +3437 -0
  83. data/test/colt/VALE3.xlsx +0 -0
  84. data/test/colt/VALE3_short-err.csv +20 -0
  85. data/test/colt/VALE3_short.csv +20 -0
  86. data/test/colt/VALE3_short.xlsx +0 -0
  87. data/test/colt/test_complete.rb +25 -0
  88. data/test/colt/test_stat_list.rb +128 -0
  89. data/test/colt/test_statistics.rb +114 -0
  90. data/test/complete.rb +25 -0
  91. data/test/env.rb +54 -30
  92. data/test/{arithmetic_casting.rb → mdarray/arithmetic_casting.rb} +0 -0
  93. data/test/{test_access.rb → mdarray/test_access.rb} +0 -0
  94. data/test/{test_boolean.rb → mdarray/test_boolean.rb} +0 -2
  95. data/test/{test_comparison.rb → mdarray/test_comparison.rb} +0 -0
  96. data/test/{test_complete.rb → mdarray/test_complete.rb} +3 -14
  97. data/test/{test_counter.rb → mdarray/test_counter.rb} +0 -0
  98. data/test/{test_creation.rb → mdarray/test_creation.rb} +0 -0
  99. data/test/{test_error.rb → mdarray/test_error.rb} +8 -5
  100. data/test/{test_operator.rb → mdarray/test_operator.rb} +6 -2
  101. data/test/{test_speed.rb → mdarray/test_performance.rb} +74 -39
  102. data/test/{test_printing.rb → mdarray/test_printing.rb} +0 -1
  103. data/test/{test_shape.rb → mdarray/test_shape.rb} +0 -0
  104. data/test/mdarray/test_statistics.rb +80 -0
  105. data/test/{test_trigonometry.rb → mdarray/test_trigonometry.rb} +0 -0
  106. data/test/{test_views.rb → mdarray/test_views.rb} +0 -0
  107. data/vendor/parallelcolt-0.10.0.jar +0 -0
  108. data/version.rb +1 -1
  109. metadata +122 -39
  110. data/test/test_lazy.rb +0 -52
  111. data/test/test_statistics.rb +0 -38
data/doc/RubyFunctions.html ADDED
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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+ <title>
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+ Module: RubyFunctions
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+
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+ &mdash; Documentation by YARD 0.8.5.2
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+ </title>
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+
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+ <link rel="stylesheet" href="css/style.css" type="text/css" media="screen" charset="utf-8" />
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+ <link rel="stylesheet" href="css/common.css" type="text/css" media="screen" charset="utf-8" />
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+ <script type="text/javascript" charset="utf-8">
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+ hasFrames = window.top.frames.main ? true : false;
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+ relpath = '';
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+ framesUrl = "frames.html#!" + escape(window.location.href);
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+ </script>
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+ <script type="text/javascript" charset="utf-8" src="js/jquery.js"></script>
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+ <script type="text/javascript" charset="utf-8" src="js/app.js"></script>
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+
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+
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+ </head>
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+ <body>
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+ <div id="header">
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+ <div id="menu">
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+ <a href="_index.html">Index (R)</a> &raquo;
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+
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+ <span class="title">RubyFunctions</span>
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+ <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
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+ </div>
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+
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+ <div id="search">
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+ <a class="full_list_link" id="class_list_link"
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+ href="class_list.html">
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+ Class List
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+ </a>
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+ <a class="full_list_link" id="method_list_link"
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+ href="method_list.html">
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+ Method List
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+ </a>
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+ <a class="full_list_link" id="file_list_link"
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+ href="file_list.html">
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+ File List
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+ </a>
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+
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+ </div>
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+ <div class="clear"></div>
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+ </div>
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+
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+ <iframe id="search_frame"></iframe>
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+
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+ <div id="content"><h1>Module: RubyFunctions
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+ </h1>
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+
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+ <dl class="box">
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+
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+ <dt class="r1">Included in:</dt>
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+ <dd class="r1"><span class='object_link'><a href="BitwiseOperators.html" title="BitwiseOperators (module)">BitwiseOperators</a></span>, <span class='object_link'><a href="BooleanFunctions.html" title="BooleanFunctions (module)">BooleanFunctions</a></span>, <span class='object_link'><a href="ComparisonOperators.html" title="ComparisonOperators (module)">ComparisonOperators</a></span>, <span class='object_link'><a href="GenericFunctions.html" title="GenericFunctions (module)">GenericFunctions</a></span>, <span class='object_link'><a href="NumericFunctions.html" title="NumericFunctions (module)">NumericFunctions</a></span>, <span class='object_link'><a href="RubyMath.html" title="RubyMath (module)">RubyMath</a></span>, <span class='object_link'><a href="RubyStats.html" title="RubyStats (module)">RubyStats</a></span>, <span class='object_link'><a href="UserFunction.html" title="UserFunction (module)">UserFunction</a></span></dd>
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+
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+ <dt class="r2 last">Defined in:</dt>
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+ <dd class="r2 last">lib/mdarray/ruby_functions.rb</dd>
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+ </dl>
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+ <h2>
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+ Instance Method Summary
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+ <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
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+ </h2>
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+
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+ <ul class="summary">
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+ <li class="public ">
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+ <span class="summary_signature">
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+ <a href="#ruby_binary_function-instance_method" title="#ruby_binary_function (instance method)">- (Object) <strong>ruby_binary_function</strong>(long_name, proc) </a>
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+ <li class="public ">
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+ <span class="summary_signature">
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+ <a href="#ruby_unary_function-instance_method" title="#ruby_unary_function (instance method)">- (Object) <strong>ruby_unary_function</strong>(long_name, proc) </a>
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+ </ul>
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+ <div id="instance_method_details" class="method_details_list">
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+ <h2>Instance Method Details</h2>
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+ <div class="method_details first">
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+ <h3 class="signature first" id="ruby_binary_function-instance_method">
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+
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+ - (<tt>Object</tt>) <strong>ruby_binary_function</strong>(long_name, proc)
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+ </h3><table class="source_code">
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+ <tr>
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+ <td>
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+ <pre class="lines">
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+ 28
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+ 30</pre>
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/mdarray/ruby_functions.rb', line 28</span>
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+ <span class='rubyid_def def kw'>def</span> <span class='rubyid_ruby_binary_function identifier id'>ruby_binary_function</span><span class='lparen token'>(</span><span class='rubyid_long_name identifier id'>long_name</span><span class='comma token'>,</span> <span class='rubyid_proc identifier id'>proc</span><span class='rparen token'>)</span>
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+ <span class='lbrack token'>[</span><span class='rubyid_long_name identifier id'>long_name</span><span class='comma token'>,</span> <span class='string val'>&quot;RubyFunctions&quot;</span><span class='comma token'>,</span> <span class='rubyid_proc identifier id'>proc</span><span class='comma token'>,</span> <span class='string val'>&quot;*&quot;</span><span class='comma token'>,</span> <span class='string val'>&quot;*&quot;</span><span class='comma token'>,</span> <span class='string val'>&quot;*&quot;</span><span class='rbrack token'>]</span>
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+ <span class='rubyid_end end kw'>end</span>
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+ </pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+ <div class="method_details ">
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+ <h3 class="signature " id="ruby_unary_function-instance_method">
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+ - (<tt>Object</tt>) <strong>ruby_unary_function</strong>(long_name, proc)
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+ 34</pre>
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/mdarray/ruby_functions.rb', line 32</span>
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+
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+ <span class='rubyid_def def kw'>def</span> <span class='rubyid_ruby_unary_function identifier id'>ruby_unary_function</span><span class='lparen token'>(</span><span class='rubyid_long_name identifier id'>long_name</span><span class='comma token'>,</span> <span class='rubyid_proc identifier id'>proc</span><span class='rparen token'>)</span>
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+ <span class='lbrack token'>[</span><span class='rubyid_long_name identifier id'>long_name</span><span class='comma token'>,</span> <span class='string val'>&quot;RubyFunctions&quot;</span><span class='comma token'>,</span> <span class='rubyid_proc identifier id'>proc</span><span class='comma token'>,</span> <span class='string val'>&quot;*&quot;</span><span class='comma token'>,</span> <span class='string val'>&quot;*&quot;</span><span class='comma token'>,</span> <span class='string val'>&quot;*&quot;</span><span class='rbrack token'>]</span>
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+ <span class='rubyid_end end kw'>end</span>
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+ </pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+ </div>
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+ </div>
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+ <div id="footer">
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+ Generated on Thu May 16 12:48:34 2013 by
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+ <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
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+ 0.8.5.2 (ruby-1.9.3).
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+ </div>
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+ </body>
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+ </html>
data/doc/RubyMath.html ADDED
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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+ <title>
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+ Module: RubyMath
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+ &mdash; Documentation by YARD 0.8.5.2
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+ </title>
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+ <link rel="stylesheet" href="css/style.css" type="text/css" media="screen" charset="utf-8" />
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+ <link rel="stylesheet" href="css/common.css" type="text/css" media="screen" charset="utf-8" />
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+
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+ <script type="text/javascript" charset="utf-8">
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+ hasFrames = window.top.frames.main ? true : false;
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+ relpath = '';
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+ framesUrl = "frames.html#!" + escape(window.location.href);
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+ </script>
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+ <script type="text/javascript" charset="utf-8" src="js/jquery.js"></script>
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+ <script type="text/javascript" charset="utf-8" src="js/app.js"></script>
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+ </head>
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+ <body>
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+ <div id="header">
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+ <div id="menu">
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+ <a href="_index.html">Index (R)</a> &raquo;
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+ <span class="title">RubyMath</span>
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+ <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
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+ </div>
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+ <div id="search">
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+ <a class="full_list_link" id="class_list_link"
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+ href="class_list.html">
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+ Class List
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+ </a>
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+ <a class="full_list_link" id="method_list_link"
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+ href="method_list.html">
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+ Method List
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+ </a>
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+ <a class="full_list_link" id="file_list_link"
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+ href="file_list.html">
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+ File List
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+ </a>
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+ </div>
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+ <div class="clear"></div>
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+ </div>
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+
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+ <iframe id="search_frame"></iframe>
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+
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+ <div id="content"><h1>Module: RubyMath
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+ </h1>
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+ <dl class="box">
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+ <dt class="r1">Extended by:</dt>
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+ <dd class="r1"><span class='object_link'><a href="FunctionCreation.html" title="FunctionCreation (module)">FunctionCreation</a></span>, <span class='object_link'><a href="RubyFunctions.html" title="RubyFunctions (module)">RubyFunctions</a></span></dd>
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+ <dt class="r2">Included in:</dt>
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+ <dd class="r2"><span class='object_link'><a href="NumericalMDArray.html" title="NumericalMDArray (class)">NumericalMDArray</a></span></dd>
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+ <dt class="r1 last">Defined in:</dt>
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+ <dd class="r1 last">lib/mdarray/ruby_math.rb</dd>
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+ <h3 class="inherited">Methods included from <span class='object_link'><a href="RubyFunctions.html" title="RubyFunctions (module)">RubyFunctions</a></span></h3>
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+ <p class="inherited"><span class='object_link'><a href="RubyFunctions.html#ruby_binary_function-instance_method" title="RubyFunctions#ruby_binary_function (method)">ruby_binary_function</a></span>, <span class='object_link'><a href="RubyFunctions.html#ruby_unary_function-instance_method" title="RubyFunctions#ruby_unary_function (method)">ruby_unary_function</a></span></p>
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+ <h3 class="inherited">Methods included from <span class='object_link'><a href="FunctionCreation.html" title="FunctionCreation (module)">FunctionCreation</a></span></h3>
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+ <p class="inherited"><span class='object_link'><a href="FunctionCreation.html#make_binary_op-instance_method" title="FunctionCreation#make_binary_op (method)">make_binary_op</a></span>, <span class='object_link'><a href="FunctionCreation.html#make_binary_operators-instance_method" title="FunctionCreation#make_binary_operators (method)">make_binary_operators</a></span>, <span class='object_link'><a href="FunctionCreation.html#make_comparison_op-instance_method" title="FunctionCreation#make_comparison_op (method)">make_comparison_op</a></span>, <span class='object_link'><a href="FunctionCreation.html#make_unary_op-instance_method" title="FunctionCreation#make_unary_op (method)">make_unary_op</a></span>, <span class='object_link'><a href="FunctionCreation.html#make_unary_operators-instance_method" title="FunctionCreation#make_unary_operators (method)">make_unary_operators</a></span></p>
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+ </div>
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+
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+ <div id="footer">
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+ Generated on Thu May 16 12:48:34 2013 by
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+ <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
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+ 0.8.5.2 (ruby-1.9.3).
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+ </div>
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+
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+ </body>
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+ </html>
data/doc/RubyStats.html ADDED
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <head>
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+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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+ <title>
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+ Module: RubyStats
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+
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+ &mdash; Documentation by YARD 0.8.5.2
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+ </title>
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+
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+ <link rel="stylesheet" href="css/style.css" type="text/css" media="screen" charset="utf-8" />
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+ <link rel="stylesheet" href="css/common.css" type="text/css" media="screen" charset="utf-8" />
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+
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+ <script type="text/javascript" charset="utf-8">
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+ hasFrames = window.top.frames.main ? true : false;
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+ relpath = '';
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+ <div id="menu">
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+ <a href="_index.html">Index (R)</a> &raquo;
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+ <span class="title">RubyStats</span>
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+
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+ <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
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+ Class List
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+ Method List
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+ <div class="clear"></div>
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+ </div>
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+
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+ <iframe id="search_frame"></iframe>
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+
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+ <div id="content"><h1>Module: RubyStats
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+
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+
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+
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+ </h1>
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+
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+ <dl class="box">
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+
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+
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+
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+ <dt class="r1">Extended by:</dt>
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+ <dd class="r1"><span class='object_link'><a href="FunctionCreation.html" title="FunctionCreation (module)">FunctionCreation</a></span>, <span class='object_link'><a href="RubyFunctions.html" title="RubyFunctions (module)">RubyFunctions</a></span></dd>
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+
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+
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+
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+
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+ <dt class="r2">Included in:</dt>
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+ <dd class="r2"><span class='object_link'><a href="DoubleMDArray.html" title="DoubleMDArray (class)">DoubleMDArray</a></span></dd>
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+
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+
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+
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+ <dt class="r1 last">Defined in:</dt>
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+ <dd class="r1 last">lib/mdarray/ruby_stats.rb</dd>
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+
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+ </dl>
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+ <div class="clear"></div>
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+
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+
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+ <h2>Method Summary</h2>
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+
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+ <h3 class="inherited">Methods included from <span class='object_link'><a href="RubyFunctions.html" title="RubyFunctions (module)">RubyFunctions</a></span></h3>
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+ <p class="inherited"><span class='object_link'><a href="RubyFunctions.html#ruby_binary_function-instance_method" title="RubyFunctions#ruby_binary_function (method)">ruby_binary_function</a></span>, <span class='object_link'><a href="RubyFunctions.html#ruby_unary_function-instance_method" title="RubyFunctions#ruby_unary_function (method)">ruby_unary_function</a></span></p>
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+
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+
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+
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+ <h3 class="inherited">Methods included from <span class='object_link'><a href="FunctionCreation.html" title="FunctionCreation (module)">FunctionCreation</a></span></h3>
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+ <p class="inherited"><span class='object_link'><a href="FunctionCreation.html#make_binary_op-instance_method" title="FunctionCreation#make_binary_op (method)">make_binary_op</a></span>, <span class='object_link'><a href="FunctionCreation.html#make_binary_operators-instance_method" title="FunctionCreation#make_binary_operators (method)">make_binary_operators</a></span>, <span class='object_link'><a href="FunctionCreation.html#make_comparison_op-instance_method" title="FunctionCreation#make_comparison_op (method)">make_comparison_op</a></span>, <span class='object_link'><a href="FunctionCreation.html#make_unary_op-instance_method" title="FunctionCreation#make_unary_op (method)">make_unary_op</a></span>, <span class='object_link'><a href="FunctionCreation.html#make_unary_operators-instance_method" title="FunctionCreation#make_unary_operators (method)">make_unary_operators</a></span></p>
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+
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+ </div>
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+ <div id="footer">
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+ Generated on Thu May 16 12:48:34 2013 by
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+ <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
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+ 0.8.5.2 (ruby-1.9.3).
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