mdarray 0.4.3.pre-java → 0.5.0-java

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  1. data/README.md +82 -14
  2. data/Rakefile +8 -2
  3. data/doc/BinaryOperator.html +227 -0
  4. data/doc/BitwiseOperators.html +135 -0
  5. data/doc/BooleanFunctions.html +135 -0
  6. data/doc/BooleanMDArray.html +193 -0
  7. data/doc/ByteMDArray.html +271 -0
  8. data/doc/Colt.html +269 -0
  9. data/doc/ComparisonOperators.html +135 -0
  10. data/doc/Const.html +490 -0
  11. data/doc/Csv.html +589 -0
  12. data/doc/DDescriptive.html +4373 -0
  13. data/doc/DoubleMDArray.html +555 -0
  14. data/doc/DoubleStatList.html +256 -0
  15. data/doc/FastBinaryOperator.html +743 -0
  16. data/doc/FastBoolean.html +512 -0
  17. data/doc/FastUnaryOperator.html +583 -0
  18. data/doc/FloatMDArray.html +237 -0
  19. data/doc/FunctionCreation.html +520 -0
  20. data/doc/FunctionMap.html +813 -0
  21. data/doc/GenericFunctions.html +135 -0
  22. data/doc/IntMDArray.html +259 -0
  23. data/doc/LongMDArray.html +257 -0
  24. data/doc/MDArray.html +9639 -0
  25. data/doc/MDArray/Counter.html +2767 -0
  26. data/doc/MDArray/IteratorFast.html +872 -0
  27. data/doc/MDArray/IteratorFastBoolean.html +384 -0
  28. data/doc/MDArray/IteratorFastByte.html +373 -0
  29. data/doc/MDArray/IteratorFastChar.html +384 -0
  30. data/doc/MDArray/IteratorFastDouble.html +384 -0
  31. data/doc/MDArray/IteratorFastFloat.html +384 -0
  32. data/doc/MDArray/IteratorFastInt.html +384 -0
  33. data/doc/MDArray/IteratorFastLong.html +384 -0
  34. data/doc/MDArray/IteratorFastShort.html +384 -0
  35. data/doc/MDArrayTest.html +125 -0
  36. data/doc/NonNumericalMDArray.html +177 -0
  37. data/doc/NumericFunctions.html +297 -0
  38. data/doc/NumericalMDArray.html +278 -0
  39. data/doc/Operator.html +826 -0
  40. data/doc/Proc.html +1097 -0
  41. data/doc/RubyBinaryOperator.html +526 -0
  42. data/doc/RubyFunctions.html +232 -0
  43. data/doc/RubyMath.html +135 -0
  44. data/doc/RubyStats.html +135 -0
  45. data/doc/RubyUnaryOperator.html +510 -0
  46. data/doc/ShortMDArray.html +267 -0
  47. data/doc/StatList.html +1176 -0
  48. data/doc/StringMDArray.html +181 -0
  49. data/doc/StructureMDArray.html +181 -0
  50. data/doc/UnaryOperator.html +227 -0
  51. data/doc/UserFunction.html +297 -0
  52. data/doc/_index.html +467 -0
  53. data/doc/class_list.html +53 -0
  54. data/doc/css/common.css +1 -0
  55. data/doc/css/full_list.css +57 -0
  56. data/doc/css/style.css +338 -0
  57. data/doc/file.README.html +173 -0
  58. data/doc/file_list.html +55 -0
  59. data/doc/frames.html +28 -0
  60. data/doc/index.html +173 -0
  61. data/doc/js/app.js +214 -0
  62. data/doc/js/full_list.js +173 -0
  63. data/doc/js/jquery.js +4 -0
  64. data/doc/method_list.html +2524 -0
  65. data/doc/top-level-namespace.html +114 -0
  66. data/lib/colt/colt.rb +56 -0
  67. data/lib/colt/colt_mdarray.rb +95 -0
  68. data/lib/colt/double_descriptive.rb +636 -0
  69. data/lib/colt/probability.rb +12 -0
  70. data/lib/colt/stat_list.rb +192 -0
  71. data/lib/env.rb +5 -1
  72. data/lib/mdarray.rb +5 -0
  73. data/lib/mdarray/access.rb +2 -2
  74. data/lib/mdarray/creation.rb +34 -19
  75. data/lib/mdarray/csv.rb +61 -0
  76. data/lib/mdarray/fast_operators.rb +241 -0
  77. data/lib/mdarray/operators.rb +18 -0
  78. data/lib/mdarray/ruby_operators.rb +2 -18
  79. data/lib/mdarray/ruby_stats.rb +1 -1
  80. data/lib/mdarray/views.rb +8 -8
  81. data/target/helper.jar +0 -0
  82. data/test/colt/VALE3.csv +3437 -0
  83. data/test/colt/VALE3.xlsx +0 -0
  84. data/test/colt/VALE3_short-err.csv +20 -0
  85. data/test/colt/VALE3_short.csv +20 -0
  86. data/test/colt/VALE3_short.xlsx +0 -0
  87. data/test/colt/test_complete.rb +25 -0
  88. data/test/colt/test_stat_list.rb +128 -0
  89. data/test/colt/test_statistics.rb +114 -0
  90. data/test/complete.rb +25 -0
  91. data/test/env.rb +54 -30
  92. data/test/{arithmetic_casting.rb → mdarray/arithmetic_casting.rb} +0 -0
  93. data/test/{test_access.rb → mdarray/test_access.rb} +0 -0
  94. data/test/{test_boolean.rb → mdarray/test_boolean.rb} +0 -2
  95. data/test/{test_comparison.rb → mdarray/test_comparison.rb} +0 -0
  96. data/test/{test_complete.rb → mdarray/test_complete.rb} +3 -14
  97. data/test/{test_counter.rb → mdarray/test_counter.rb} +0 -0
  98. data/test/{test_creation.rb → mdarray/test_creation.rb} +0 -0
  99. data/test/{test_error.rb → mdarray/test_error.rb} +8 -5
  100. data/test/{test_operator.rb → mdarray/test_operator.rb} +6 -2
  101. data/test/{test_speed.rb → mdarray/test_performance.rb} +74 -39
  102. data/test/{test_printing.rb → mdarray/test_printing.rb} +0 -1
  103. data/test/{test_shape.rb → mdarray/test_shape.rb} +0 -0
  104. data/test/mdarray/test_statistics.rb +80 -0
  105. data/test/{test_trigonometry.rb → mdarray/test_trigonometry.rb} +0 -0
  106. data/test/{test_views.rb → mdarray/test_views.rb} +0 -0
  107. data/vendor/parallelcolt-0.10.0.jar +0 -0
  108. data/version.rb +1 -1
  109. metadata +122 -39
  110. data/test/test_lazy.rb +0 -52
  111. data/test/test_statistics.rb +0 -38
data/doc/Csv.html ADDED
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+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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+ </head>
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+ <body>
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+ <span class="title">Csv</span>
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+ <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
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+ </div>
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+ <div id="search">
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+ <a class="full_list_link" id="class_list_link"
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+ Class List
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+ <a class="full_list_link" id="method_list_link"
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+ href="method_list.html">
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+ Method List
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+ </a>
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+ <a class="full_list_link" id="file_list_link"
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+ href="file_list.html">
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+ File List
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+ </a>
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+ </div>
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+ <div class="clear"></div>
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+ </div>
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+ <div id="content"><h1>Class: Csv
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+ <dl class="box">
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+ <dt class="r1">Inherits:</dt>
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+ <span class="inheritName">Object</span>
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+ <ul class="fullTree">
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+ <li>Object</li>
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+
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+ <li class="next">Csv</li>
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+ </ul>
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+ <a href="#" class="inheritanceTree">show all</a>
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+ <dd class="r2 last">lib/mdarray/csv.rb</dd>
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+ </dl>
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+ <div class="clear"></div>
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+ <ul class="summary">
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+
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+ <li class="public ">
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+ <span class="summary_signature">
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+ <a href="#epoch-class_method" title="epoch (class method)">+ (Object) <strong>epoch</strong> </a>
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+ <span class="summary_desc"><div class='inline'>
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+ <p>Returns the value of attribute epoch.</p>
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+ </div></span>
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+ </li>
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+ </ul>
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+ <h2>Instance Attribute Summary <small>(<a href="#" class="summary_toggle">collapse</a>)</small></h2>
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+ <ul class="summary">
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+ <li class="public ">
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+ <span class="summary_signature">
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+ <a href="#col_sep-instance_method" title="#col_sep (instance method)">- (Object) <strong>col_sep</strong> </a>
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+ <p>Returns the value of attribute col_sep.</p>
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+ </li>
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+ <li class="public ">
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+ <a href="#quote_char-instance_method" title="#quote_char (instance method)">- (Object) <strong>quote_char</strong> </a>
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+ <p>Returns the value of attribute quote_char.</p>
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+ <li class="public ">
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+ <a href="#row_sep-instance_method" title="#row_sep (instance method)">- (Object) <strong>row_sep</strong> </a>
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+ <span class="note title readonly">readonly</span>
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+ <span class="summary_desc"><div class='inline'>
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+ <p>Returns the value of attribute row_sep.</p>
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+ </div></span>
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+ </li>
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+ </ul>
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+ <h2>
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+ Class Method Summary
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+ </h2>
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+ <ul class="summary">
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+ <li class="public ">
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+ <span class="summary_signature">
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+ <a href="#read_numeric-class_method" title="read_numeric (class method)">+ (Object) <strong>read_numeric</strong>(filename, headers = false) </a>
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+ </ul>
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+ <div id="class_attr_details" class="attr_details">
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+ <h2>Class Attribute Details</h2>
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+ <span id=""></span>
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+ <div class="method_details first">
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+ <h3 class="signature first" id="epoch-class_method">
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+ + (<tt>Object</tt>) <strong>epoch</strong> <span class="extras">(readonly)</span>
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+ </h3><div class="docstring">
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+ <div class="discussion">
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+ <p>Returns the value of attribute epoch</p>
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+ </div>
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+ </div>
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+ <div class="tags">
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+ <tr>
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+ <pre class="lines">
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+ 13
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+ 15</pre>
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/mdarray/csv.rb', line 13</span>
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+
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+ <span class='rubyid_def def kw'>def</span> <span class='rubyid_epoch identifier id'>epoch</span>
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+ <span class='rubyid_@epoch ivar id'>@epoch</span>
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+ <span class='rubyid_end end kw'>end</span>
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+ </pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+ </div>
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+ <div id="instance_attr_details" class="attr_details">
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+ <h2>Instance Attribute Details</h2>
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+ <span id=""></span>
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+ <div class="method_details first">
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+ <h3 class="signature first" id="col_sep-instance_method">
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+ </h3><div class="docstring">
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+ <p>Returns the value of attribute col_sep</p>
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+ </div>
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+ <div class="tags">
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+ </div><table class="source_code">
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+ <tr>
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+ 8</pre>
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/mdarray/csv.rb', line 6</span>
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+ <span class='rubyid_def def kw'>def</span> <span class='rubyid_col_sep identifier id'>col_sep</span>
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+ <span class='rubyid_@col_sep ivar id'>@col_sep</span>
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+ <span class='rubyid_end end kw'>end</span>
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+ </pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+ <span id=""></span>
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+ <div class="method_details ">
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+ <h3 class="signature " id="quote_char-instance_method">
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+ - (<tt>Object</tt>) <strong>quote_char</strong> <span class="extras">(readonly)</span>
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+ </h3><div class="docstring">
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+ <div class="discussion">
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+ <p>Returns the value of attribute quote_char</p>
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+ </div>
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+ <div class="tags">
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/mdarray/csv.rb', line 8</span>
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+ <span class='rubyid_def def kw'>def</span> <span class='rubyid_quote_char identifier id'>quote_char</span>
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+ <span class='rubyid_@quote_char ivar id'>@quote_char</span>
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+ <span class='rubyid_end end kw'>end</span>
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+ </pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+ <div class="method_details ">
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+ <h3 class="signature " id="row_sep-instance_method">
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/mdarray/csv.rb', line 7</span>
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+ <span class='rubyid_def def kw'>def</span> <span class='rubyid_row_sep identifier id'>row_sep</span>
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+ <span class='rubyid_@row_sep ivar id'>@row_sep</span>
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+ <span class='rubyid_end end kw'>end</span>
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+ </pre>
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+ </table>
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+ <h2>Class Method Details</h2>
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+ <div class="method_details first">
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+ <h3 class="signature first" id="read_numeric-class_method">
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+ <span class='rubyid_def def kw'>def</span> <span class='rubyid_self self kw'>self</span><span class='dot token'>.</span><span class='rubyid_read_numeric identifier id'>read_numeric</span><span class='lparen token'>(</span><span class='rubyid_filename identifier id'>filename</span><span class='comma token'>,</span> <span class='rubyid_headers identifier id'>headers</span> <span class='assign token'>=</span> <span class='rubyid_false false kw'>false</span><span class='rparen token'>)</span>
533
+
534
+ <span class='rubyid_buffer identifier id'>buffer</span> <span class='assign token'>=</span> <span class='rubyid_Array constant id'>Array</span><span class='dot token'>.</span><span class='rubyid_new identifier id'>new</span>
535
+ <span class='rubyid_lines identifier id'>lines</span> <span class='assign token'>=</span> <span class='integer val'>0</span>
536
+ <span class='rubyid_columns identifier id'>columns</span> <span class='assign token'>=</span> <span class='rubyid_nil nil kw'>nil</span>
537
+
538
+ <span class='rubyid_CSV constant id'>CSV</span><span class='dot token'>.</span><span class='rubyid_foreach identifier id'>foreach</span><span class='lparen token'>(</span><span class='rubyid_filename identifier id'>filename</span><span class='comma token'>,</span>
539
+ <span class='lbrace token'>{</span><span class='rubyid_return_headers identifier id'>return_headers</span><span class='colon op'>:</span> <span class='rubyid_false false kw'>false</span><span class='comma token'>,</span>
540
+ <span class='comment val'># headers: true,</span>
541
+ <span class='rubyid_converters identifier id'>converters</span><span class='colon op'>:</span> <span class='lbrack token'>[</span><span class='symbol val'>:numeric</span><span class='comma token'>,</span> <span class='symbol val'>:date</span><span class='rbrack token'>]</span><span class='rbrace token'>}</span> <span class='rparen token'>)</span> <span class='rubyid_do do kw'>do</span> <span class='bitor op'>|</span><span class='rubyid_row identifier id'>row</span><span class='bitor op'>|</span>
542
+
543
+ <span class='rubyid_if if kw'>if</span> <span class='lparen token'>(</span><span class='rubyid_headers identifier id'>headers</span><span class='rparen token'>)</span>
544
+ <span class='rubyid_headers identifier id'>headers</span> <span class='assign token'>=</span> <span class='rubyid_false false kw'>false</span>
545
+ <span class='rubyid_next next kw'>next</span>
546
+ <span class='rubyid_end end kw'>end</span>
547
+
548
+ <span class='rubyid_columns identifier id'>columns</span> <span class='opasgn op'>||=</span> <span class='rubyid_row identifier id'>row</span><span class='dot token'>.</span><span class='rubyid_size identifier id'>size</span>
549
+ <span class='rubyid_lines identifier id'>lines</span> <span class='opasgn op'>+=</span> <span class='integer val'>1</span>
550
+
551
+ <span class='rubyid_row identifier id'>row</span><span class='dot token'>.</span><span class='rubyid_each identifier id'>each</span> <span class='rubyid_do do kw'>do</span> <span class='bitor op'>|</span><span class='rubyid_data identifier id'>data</span><span class='bitor op'>|</span>
552
+
553
+ <span class='rubyid_if if kw'>if</span> <span class='lparen token'>(</span><span class='rubyid_row identifier id'>row</span><span class='dot token'>.</span><span class='rubyid_size identifier id'>size</span> <span class='neq op'>!=</span> <span class='rubyid_columns identifier id'>columns</span><span class='rparen token'>)</span>
554
+ <span class='rubyid_raise identifier id'>raise</span> <span class='string val'>&quot;Data does not have the same number of columns for all lines&quot;</span>
555
+ <span class='rubyid_end end kw'>end</span>
556
+
557
+ <span class='comment val'># if it is a Date, then convert it to seconds since epoch</span>
558
+ <span class='rubyid_if if kw'>if</span> <span class='lparen token'>(</span><span class='rubyid_data identifier id'>data</span><span class='dot token'>.</span><span class='rubyid_is_a? fid id'>is_a?</span> <span class='rubyid_Date constant id'>Date</span><span class='rparen token'>)</span>
559
+ <span class='rubyid_buffer identifier id'>buffer</span> <span class='lshft op'>&lt;&lt;</span> <span class='rubyid_data identifier id'>data</span><span class='dot token'>.</span><span class='rubyid_to_time identifier id'>to_time</span><span class='dot token'>.</span><span class='rubyid_to_i identifier id'>to_i</span>
560
+ <span class='rubyid_end end kw'>end</span>
561
+
562
+ <span class='rubyid_if if kw'>if</span> <span class='lparen token'>(</span><span class='rubyid_data identifier id'>data</span><span class='dot token'>.</span><span class='rubyid_is_a? fid id'>is_a?</span> <span class='rubyid_Numeric constant id'>Numeric</span><span class='rparen token'>)</span>
563
+ <span class='rubyid_buffer identifier id'>buffer</span> <span class='lshft op'>&lt;&lt;</span> <span class='rubyid_data identifier id'>data</span>
564
+ <span class='rubyid_end end kw'>end</span>
565
+ <span class='rubyid_end end kw'>end</span>
566
+
567
+ <span class='rubyid_end end kw'>end</span>
568
+
569
+ <span class='lbrack token'>[</span><span class='rubyid_lines identifier id'>lines</span><span class='comma token'>,</span> <span class='rubyid_columns identifier id'>columns</span><span class='comma token'>,</span> <span class='rubyid_buffer identifier id'>buffer</span><span class='rbrack token'>]</span>
570
+
571
+ <span class='rubyid_end end kw'>end</span>
572
+ </pre>
573
+ </td>
574
+ </tr>
575
+ </table>
576
+ </div>
577
+
578
+ </div>
579
+
580
+ </div>
581
+
582
+ <div id="footer">
583
+ Generated on Thu May 16 12:48:37 2013 by
584
+ <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
585
+ 0.8.5.2 (ruby-1.9.3).
586
+ </div>
587
+
588
+ </body>
589
+ </html>