mdarray 0.4.3.pre-java → 0.5.0-java

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  1. data/README.md +82 -14
  2. data/Rakefile +8 -2
  3. data/doc/BinaryOperator.html +227 -0
  4. data/doc/BitwiseOperators.html +135 -0
  5. data/doc/BooleanFunctions.html +135 -0
  6. data/doc/BooleanMDArray.html +193 -0
  7. data/doc/ByteMDArray.html +271 -0
  8. data/doc/Colt.html +269 -0
  9. data/doc/ComparisonOperators.html +135 -0
  10. data/doc/Const.html +490 -0
  11. data/doc/Csv.html +589 -0
  12. data/doc/DDescriptive.html +4373 -0
  13. data/doc/DoubleMDArray.html +555 -0
  14. data/doc/DoubleStatList.html +256 -0
  15. data/doc/FastBinaryOperator.html +743 -0
  16. data/doc/FastBoolean.html +512 -0
  17. data/doc/FastUnaryOperator.html +583 -0
  18. data/doc/FloatMDArray.html +237 -0
  19. data/doc/FunctionCreation.html +520 -0
  20. data/doc/FunctionMap.html +813 -0
  21. data/doc/GenericFunctions.html +135 -0
  22. data/doc/IntMDArray.html +259 -0
  23. data/doc/LongMDArray.html +257 -0
  24. data/doc/MDArray.html +9639 -0
  25. data/doc/MDArray/Counter.html +2767 -0
  26. data/doc/MDArray/IteratorFast.html +872 -0
  27. data/doc/MDArray/IteratorFastBoolean.html +384 -0
  28. data/doc/MDArray/IteratorFastByte.html +373 -0
  29. data/doc/MDArray/IteratorFastChar.html +384 -0
  30. data/doc/MDArray/IteratorFastDouble.html +384 -0
  31. data/doc/MDArray/IteratorFastFloat.html +384 -0
  32. data/doc/MDArray/IteratorFastInt.html +384 -0
  33. data/doc/MDArray/IteratorFastLong.html +384 -0
  34. data/doc/MDArray/IteratorFastShort.html +384 -0
  35. data/doc/MDArrayTest.html +125 -0
  36. data/doc/NonNumericalMDArray.html +177 -0
  37. data/doc/NumericFunctions.html +297 -0
  38. data/doc/NumericalMDArray.html +278 -0
  39. data/doc/Operator.html +826 -0
  40. data/doc/Proc.html +1097 -0
  41. data/doc/RubyBinaryOperator.html +526 -0
  42. data/doc/RubyFunctions.html +232 -0
  43. data/doc/RubyMath.html +135 -0
  44. data/doc/RubyStats.html +135 -0
  45. data/doc/RubyUnaryOperator.html +510 -0
  46. data/doc/ShortMDArray.html +267 -0
  47. data/doc/StatList.html +1176 -0
  48. data/doc/StringMDArray.html +181 -0
  49. data/doc/StructureMDArray.html +181 -0
  50. data/doc/UnaryOperator.html +227 -0
  51. data/doc/UserFunction.html +297 -0
  52. data/doc/_index.html +467 -0
  53. data/doc/class_list.html +53 -0
  54. data/doc/css/common.css +1 -0
  55. data/doc/css/full_list.css +57 -0
  56. data/doc/css/style.css +338 -0
  57. data/doc/file.README.html +173 -0
  58. data/doc/file_list.html +55 -0
  59. data/doc/frames.html +28 -0
  60. data/doc/index.html +173 -0
  61. data/doc/js/app.js +214 -0
  62. data/doc/js/full_list.js +173 -0
  63. data/doc/js/jquery.js +4 -0
  64. data/doc/method_list.html +2524 -0
  65. data/doc/top-level-namespace.html +114 -0
  66. data/lib/colt/colt.rb +56 -0
  67. data/lib/colt/colt_mdarray.rb +95 -0
  68. data/lib/colt/double_descriptive.rb +636 -0
  69. data/lib/colt/probability.rb +12 -0
  70. data/lib/colt/stat_list.rb +192 -0
  71. data/lib/env.rb +5 -1
  72. data/lib/mdarray.rb +5 -0
  73. data/lib/mdarray/access.rb +2 -2
  74. data/lib/mdarray/creation.rb +34 -19
  75. data/lib/mdarray/csv.rb +61 -0
  76. data/lib/mdarray/fast_operators.rb +241 -0
  77. data/lib/mdarray/operators.rb +18 -0
  78. data/lib/mdarray/ruby_operators.rb +2 -18
  79. data/lib/mdarray/ruby_stats.rb +1 -1
  80. data/lib/mdarray/views.rb +8 -8
  81. data/target/helper.jar +0 -0
  82. data/test/colt/VALE3.csv +3437 -0
  83. data/test/colt/VALE3.xlsx +0 -0
  84. data/test/colt/VALE3_short-err.csv +20 -0
  85. data/test/colt/VALE3_short.csv +20 -0
  86. data/test/colt/VALE3_short.xlsx +0 -0
  87. data/test/colt/test_complete.rb +25 -0
  88. data/test/colt/test_stat_list.rb +128 -0
  89. data/test/colt/test_statistics.rb +114 -0
  90. data/test/complete.rb +25 -0
  91. data/test/env.rb +54 -30
  92. data/test/{arithmetic_casting.rb → mdarray/arithmetic_casting.rb} +0 -0
  93. data/test/{test_access.rb → mdarray/test_access.rb} +0 -0
  94. data/test/{test_boolean.rb → mdarray/test_boolean.rb} +0 -2
  95. data/test/{test_comparison.rb → mdarray/test_comparison.rb} +0 -0
  96. data/test/{test_complete.rb → mdarray/test_complete.rb} +3 -14
  97. data/test/{test_counter.rb → mdarray/test_counter.rb} +0 -0
  98. data/test/{test_creation.rb → mdarray/test_creation.rb} +0 -0
  99. data/test/{test_error.rb → mdarray/test_error.rb} +8 -5
  100. data/test/{test_operator.rb → mdarray/test_operator.rb} +6 -2
  101. data/test/{test_speed.rb → mdarray/test_performance.rb} +74 -39
  102. data/test/{test_printing.rb → mdarray/test_printing.rb} +0 -1
  103. data/test/{test_shape.rb → mdarray/test_shape.rb} +0 -0
  104. data/test/mdarray/test_statistics.rb +80 -0
  105. data/test/{test_trigonometry.rb → mdarray/test_trigonometry.rb} +0 -0
  106. data/test/{test_views.rb → mdarray/test_views.rb} +0 -0
  107. data/vendor/parallelcolt-0.10.0.jar +0 -0
  108. data/version.rb +1 -1
  109. metadata +122 -39
  110. data/test/test_lazy.rb +0 -52
  111. data/test/test_statistics.rb +0 -38
data/doc/RubyUnaryOperator.html ADDED
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+ Class: RubyUnaryOperator
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+ &mdash; Documentation by YARD 0.8.5.2
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+ <span class="title">RubyUnaryOperator</span>
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+ <div id="content"><h1>Class: RubyUnaryOperator
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+ </h1>
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+
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+ <dl class="box">
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+
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+ <dt class="r1">Inherits:</dt>
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+ <dd class="r1">
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+ <span class="inheritName"><span class='object_link'><a href="UnaryOperator.html" title="UnaryOperator (class)">UnaryOperator</a></span></span>
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+
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+ <ul class="fullTree">
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+ <li>Object</li>
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+
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+ <li class="next"><span class='object_link'><a href="Operator.html" title="Operator (class)">Operator</a></span></li>
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+ <li class="next"><span class='object_link'><a href="UnaryOperator.html" title="UnaryOperator (class)">UnaryOperator</a></span></li>
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+ <li class="next">RubyUnaryOperator</li>
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+ <a href="#" class="inheritanceTree">show all</a>
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+ <dt class="r2 last">Defined in:</dt>
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+ <dd class="r2 last">lib/mdarray/ruby_operators.rb</dd>
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+ <h2>Instance Attribute Summary</h2>
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+ <h3 class="inherited">Attributes inherited from <span class='object_link'><a href="Operator.html" title="Operator (class)">Operator</a></span></h3>
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+ <p class="inherited"><span class='object_link'><a href="Operator.html#arity-instance_method" title="Operator#arity (method)">#arity</a></span>, <span class='object_link'><a href="Operator.html#exec_type-instance_method" title="Operator#exec_type (method)">#exec_type</a></span>, <span class='object_link'><a href="Operator.html#force_type-instance_method" title="Operator#force_type (method)">#force_type</a></span>, <span class='object_link'><a href="Operator.html#name-instance_method" title="Operator#name (method)">#name</a></span>, <span class='object_link'><a href="Operator.html#post_condition-instance_method" title="Operator#post_condition (method)">#post_condition</a></span>, <span class='object_link'><a href="Operator.html#pre_condition-instance_method" title="Operator#pre_condition (method)">#pre_condition</a></span>, <span class='object_link'><a href="Operator.html#type-instance_method" title="Operator#type (method)">#type</a></span></p>
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+ <h2>
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+ Instance Method Summary
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+ <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
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+ </h2>
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+ <ul class="summary">
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+ <li class="public ">
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+ <span class="summary_signature">
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+ <a href="#default-instance_method" title="#default (instance method)">- (Object) <strong>default</strong>(*args) </a>
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+ <a href="#reduce-instance_method" title="#reduce (instance method)">- (Object) <strong>reduce</strong>(*args) </a>
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+ <h3 class="inherited">Methods inherited from <span class='object_link'><a href="UnaryOperator.html" title="UnaryOperator (class)">UnaryOperator</a></span></h3>
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+ <p class="inherited"><span class='object_link'><a href="UnaryOperator.html#initialize-instance_method" title="UnaryOperator#initialize (method)">#initialize</a></span></p>
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+ <p class="inherited"><span class='object_link'><a href="Operator.html#exec-instance_method" title="Operator#exec (method)">#exec</a></span>, <span class='object_link'><a href="Operator.html#initialize-instance_method" title="Operator#initialize (method)">#initialize</a></span></p>
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+ <div id="constructor_details" class="method_details_list">
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+ <h2>Constructor Details</h2>
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+ <p class="notice">This class inherits a constructor from <span class='object_link'><a href="UnaryOperator.html#initialize-instance_method" title="UnaryOperator#initialize (method)">UnaryOperator</a></span></p>
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+ </div>
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+ <div id="instance_method_details" class="method_details_list">
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+ <h2>Instance Method Details</h2>
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+ <div class="method_details first">
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+ <h3 class="signature first" id="default-instance_method">
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+ - (<tt>Object</tt>) <strong>default</strong>(*args)
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+ </h3><div class="docstring">
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+ <div class="discussion">
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+ <hr style="height: 10px">
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+ </div>
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+ </div>
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+ <div class="tags">
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+ </div><table class="source_code">
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+ <td>
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+ 126</pre>
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/mdarray/ruby_operators.rb', line 115</span>
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+
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+ <span class='rubyid_def def kw'>def</span> <span class='rubyid_default identifier id'>default</span><span class='lparen token'>(</span><span class='mult op'>*</span><span class='rubyid_args identifier id'>args</span><span class='rparen token'>)</span>
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+
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+ <span class='rubyid_get_args identifier id'>get_args</span><span class='lparen token'>(</span><span class='mult op'>*</span><span class='rubyid_args identifier id'>args</span><span class='rparen token'>)</span> <span class='rubyid_do do kw'>do</span> <span class='bitor op'>|</span><span class='rubyid_op_iterator identifier id'>op_iterator</span><span class='comma token'>,</span> <span class='rubyid_shape identifier id'>shape</span><span class='comma token'>,</span> <span class='mult op'>*</span><span class='rubyid_other_args identifier id'>other_args</span><span class='bitor op'>|</span>
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+ <span class='rubyid_result identifier id'>result</span> <span class='assign token'>=</span> <span class='rubyid_MDArray constant id'>MDArray</span><span class='dot token'>.</span><span class='rubyid_build identifier id'>build</span><span class='lparen token'>(</span><span class='rubyid_@type ivar id'>@type</span><span class='comma token'>,</span> <span class='rubyid_shape identifier id'>shape</span><span class='rparen token'>)</span>
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+ <span class='rubyid_res_iterator identifier id'>res_iterator</span> <span class='assign token'>=</span> <span class='rubyid_result identifier id'>result</span><span class='dot token'>.</span><span class='rubyid_get_iterator_fast identifier id'>get_iterator_fast</span>
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+ <span class='rubyid_while while kw'>while</span> <span class='lparen token'>(</span><span class='rubyid_res_iterator identifier id'>res_iterator</span><span class='dot token'>.</span><span class='rubyid_has_next? fid id'>has_next?</span><span class='rparen token'>)</span>
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+ <span class='rubyid_res_iterator identifier id'>res_iterator</span><span class='dot token'>.</span><span class='rubyid_set_next identifier id'>set_next</span><span class='lparen token'>(</span><span class='rubyid_@do_func ivar id'>@do_func</span><span class='dot token'>.</span><span class='rubyid_call identifier id'>call</span><span class='lparen token'>(</span><span class='rubyid_op_iterator identifier id'>op_iterator</span><span class='dot token'>.</span><span class='rubyid_get_next identifier id'>get_next</span><span class='rparen token'>)</span><span class='rparen token'>)</span>
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+ <span class='rubyid_end end kw'>end</span>
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+ <span class='rubyid_return return kw'>return</span> <span class='rubyid_result identifier id'>result</span>
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+ <span class='rubyid_end end kw'>end</span>
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+
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+ <span class='rubyid_end end kw'>end</span>
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+ </pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+
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+ <div class="method_details ">
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+ <h3 class="signature " id="in_place-instance_method">
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+ - (<tt>Object</tt>) <strong>in_place</strong>(*args)
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+ </h3><div class="docstring">
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+ <div class="discussion">
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+ <hr style="height: 10px">
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+ </div>
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/mdarray/ruby_operators.rb', line 152</span>
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+
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+ <span class='rubyid_def def kw'>def</span> <span class='rubyid_in_place identifier id'>in_place</span><span class='lparen token'>(</span><span class='mult op'>*</span><span class='rubyid_args identifier id'>args</span><span class='rparen token'>)</span>
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+
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+ <span class='rubyid_get_args identifier id'>get_args</span><span class='lparen token'>(</span><span class='mult op'>*</span><span class='rubyid_args identifier id'>args</span><span class='rparen token'>)</span> <span class='rubyid_do do kw'>do</span> <span class='bitor op'>|</span><span class='rubyid_op_iterator identifier id'>op_iterator</span><span class='comma token'>,</span> <span class='mult op'>*</span><span class='rubyid_other_args identifier id'>other_args</span><span class='bitor op'>|</span>
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+ <span class='rubyid_while while kw'>while</span> <span class='lparen token'>(</span><span class='rubyid_op_iterator identifier id'>op_iterator</span><span class='dot token'>.</span><span class='rubyid_has_next? fid id'>has_next?</span><span class='rparen token'>)</span>
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+ <span class='rubyid_op_iterator identifier id'>op_iterator</span><span class='dot token'>.</span><span class='rubyid_set_current identifier id'>set_current</span><span class='lparen token'>(</span><span class='rubyid_@do_func ivar id'>@do_func</span><span class='dot token'>.</span><span class='rubyid_call identifier id'>call</span><span class='lparen token'>(</span><span class='rubyid_op_iterator identifier id'>op_iterator</span><span class='dot token'>.</span><span class='rubyid_get_next identifier id'>get_next</span><span class='rparen token'>)</span><span class='rparen token'>)</span>
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+ <span class='rubyid_end end kw'>end</span>
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+ <span class='rubyid_return return kw'>return</span> <span class='rubyid_self self kw'>self</span>
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+ <span class='rubyid_end end kw'>end</span>
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+ <span class='rubyid_end end kw'>end</span>
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+ </pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+ <div class="method_details ">
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+ <h3 class="signature " id="reduce-instance_method">
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+ - (<tt>Object</tt>) <strong>reduce</strong>(*args)
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+
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+
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+
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+ </h3><div class="docstring">
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+ <div class="discussion">
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+ <hr style="height: 10px">
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+ <hr style="height: 10px">
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+
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+
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+ </div>
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+ </div>
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+ <div class="tags">
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+
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+
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+ </div><table class="source_code">
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+ <tr>
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+ <td>
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+ <pre class="lines">
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+ 177</pre>
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/mdarray/ruby_operators.rb', line 167</span>
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+
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+ <span class='rubyid_def def kw'>def</span> <span class='rubyid_reduce identifier id'>reduce</span><span class='lparen token'>(</span><span class='mult op'>*</span><span class='rubyid_args identifier id'>args</span><span class='rparen token'>)</span>
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+
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+ <span class='rubyid_get_args identifier id'>get_args</span><span class='lparen token'>(</span><span class='mult op'>*</span><span class='rubyid_args identifier id'>args</span><span class='rparen token'>)</span> <span class='rubyid_do do kw'>do</span> <span class='bitor op'>|</span><span class='rubyid_op_iterator identifier id'>op_iterator</span><span class='comma token'>,</span> <span class='rubyid_shape identifier id'>shape</span><span class='comma token'>,</span> <span class='mult op'>*</span><span class='rubyid_other_args identifier id'>other_args</span><span class='bitor op'>|</span>
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+ <span class='rubyid_result identifier id'>result</span> <span class='assign token'>=</span> <span class='rubyid_@pre_condition_result ivar id'>@pre_condition_result</span>
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+ <span class='rubyid_while while kw'>while</span> <span class='lparen token'>(</span><span class='rubyid_op_iterator identifier id'>op_iterator</span><span class='dot token'>.</span><span class='rubyid_has_next? fid id'>has_next?</span><span class='rparen token'>)</span>
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+ <span class='rubyid_result identifier id'>result</span> <span class='assign token'>=</span> <span class='rubyid_@do_func ivar id'>@do_func</span><span class='dot token'>.</span><span class='rubyid_call identifier id'>call</span><span class='lparen token'>(</span><span class='rubyid_result identifier id'>result</span><span class='comma token'>,</span> <span class='rubyid_op_iterator identifier id'>op_iterator</span><span class='dot token'>.</span><span class='rubyid_get_next identifier id'>get_next</span><span class='rparen token'>)</span>
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+ <span class='rubyid_end end kw'>end</span>
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+ <span class='rubyid_return return kw'>return</span> <span class='rubyid_result identifier id'>result</span>
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+ <span class='rubyid_end end kw'>end</span>
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+
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+ <span class='rubyid_end end kw'>end</span>
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+ </pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+
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+ <div class="method_details ">
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+ <h3 class="signature " id="set_block-instance_method">
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+
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+ - (<tt>Object</tt>) <strong>set_block</strong>(*args)
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+
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+
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+
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+
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+ </h3><div class="docstring">
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+ <div class="discussion">
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+ <hr style="height: 10px">
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+ <hr style="height: 10px">
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+
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+
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+ </div>
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+ </div>
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+ <div class="tags">
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+
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+
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+ </div><table class="source_code">
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+ <tr>
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+ <td>
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+ <pre class="lines">
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+ 146</pre>
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/mdarray/ruby_operators.rb', line 132</span>
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+
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+ <span class='rubyid_def def kw'>def</span> <span class='rubyid_set_block identifier id'>set_block</span><span class='lparen token'>(</span><span class='mult op'>*</span><span class='rubyid_args identifier id'>args</span><span class='rparen token'>)</span>
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+
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+ <span class='rubyid_get_args identifier id'>get_args</span><span class='lparen token'>(</span><span class='mult op'>*</span><span class='rubyid_args identifier id'>args</span><span class='rparen token'>)</span> <span class='rubyid_do do kw'>do</span> <span class='bitor op'>|</span><span class='rubyid_op_iterator identifier id'>op_iterator</span><span class='comma token'>,</span> <span class='rubyid_shape identifier id'>shape</span><span class='comma token'>,</span> <span class='mult op'>*</span><span class='rubyid_other_args identifier id'>other_args</span><span class='bitor op'>|</span>
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+ <span class='rubyid_block identifier id'>block</span> <span class='assign token'>=</span> <span class='rubyid_other_args identifier id'>other_args</span><span class='lbrack token'>[</span><span class='integer val'>0</span><span class='rbrack token'>]</span>
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+ <span class='rubyid_while while kw'>while</span> <span class='lparen token'>(</span><span class='rubyid_op_iterator identifier id'>op_iterator</span><span class='dot token'>.</span><span class='rubyid_has_next? fid id'>has_next?</span><span class='rparen token'>)</span>
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+ <span class='rubyid_op_iterator identifier id'>op_iterator</span><span class='dot token'>.</span><span class='rubyid_next identifier id'>next</span>
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+ <span class='rubyid_if if kw'>if</span> <span class='lparen token'>(</span><span class='rubyid_shape identifier id'>shape</span><span class='dot token'>.</span><span class='rubyid_size identifier id'>size</span> <span class='lt op'>&lt;</span> <span class='integer val'>8</span><span class='rparen token'>)</span>
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+ <span class='rubyid_op_iterator identifier id'>op_iterator</span><span class='dot token'>.</span><span class='rubyid_set_current identifier id'>set_current</span><span class='lparen token'>(</span><span class='rubyid_block identifier id'>block</span><span class='dot token'>.</span><span class='rubyid_call identifier id'>call</span><span class='lparen token'>(</span><span class='mult op'>*</span><span class='rubyid_op_iterator identifier id'>op_iterator</span><span class='dot token'>.</span><span class='rubyid_get_current_counter identifier id'>get_current_counter</span><span class='rparen token'>)</span><span class='rparen token'>)</span>
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+ <span class='rubyid_else else kw'>else</span>
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+ <span class='rubyid_op_iterator identifier id'>op_iterator</span><span class='dot token'>.</span><span class='rubyid_set_current identifier id'>set_current</span><span class='lparen token'>(</span><span class='rubyid_block identifier id'>block</span><span class='dot token'>.</span><span class='rubyid_call identifier id'>call</span><span class='lparen token'>(</span><span class='rubyid_op_iterator identifier id'>op_iterator</span><span class='dot token'>.</span><span class='rubyid_get_current_counter identifier id'>get_current_counter</span><span class='rparen token'>)</span><span class='rparen token'>)</span>
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+ <span class='rubyid_end end kw'>end</span>
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+ <span class='rubyid_end end kw'>end</span> <span class='rubyid_if if_mod kw'>if</span> <span class='rubyid_block identifier id'>block</span>
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+ <span class='rubyid_end end kw'>end</span>
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+
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+ <span class='rubyid_end end kw'>end</span>
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+ </pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+
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+ </div>
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+
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+ </div>
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+
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+ <div id="footer">
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+ Generated on Thu May 16 12:48:41 2013 by
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+ <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
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+ 0.8.5.2 (ruby-1.9.3).
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+ </div>
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+
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+ </body>
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+ </html>