j1-template 2022.5.0.rc3 → 2022.5.1.rc0
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- checksums.yaml +4 -4
- data/_includes/themes/j1/modules/attics/generator.html +5 -13
- data/assets/data/banner.html +2 -2
- data/assets/themes/j1/adapter/js/attic.js +106 -62
- data/assets/themes/j1/adapter/js/masterslider.js +22 -5
- data/assets/themes/j1/core/css/themes/unolight/bootstrap.css +26 -1
- data/assets/themes/j1/core/css/themes/unolight/bootstrap.min.css +1 -1
- data/assets/themes/j1/modules/backstretch/js/backstretch.js +1 -1
- data/assets/themes/j1/modules/backstretch/js/v2.1.16/backstretch.js +1696 -0
- data/assets/themes/j1/modules/backstretch/js/v2.1.16/backstretch.min.js +20 -0
- data/assets/themes/j1/modules/backstretch/js/v2.1.18/backstretch.js +1627 -0
- data/assets/themes/j1/modules/backstretch/js/v2.1.18/backstretch.min.js +20 -0
- data/assets/themes/j1/modules/cryptoJS/js/rc4.js +2 -2
- data/lib/j1/version.rb +1 -1
- data/lib/starter_web/Gemfile +1 -1
- data/lib/starter_web/README.md +440 -175
- data/lib/starter_web/_config.yml +3 -3
- data/lib/starter_web/_data/blocks/banner.yml +1 -1
- data/lib/starter_web/_data/modules/attics.yml +12 -0
- data/lib/starter_web/_data/modules/defaults/attics.yml +16 -1
- data/lib/starter_web/_data/modules/defaults/masterslider.yml +1 -1
- data/lib/starter_web/_data/modules/masterslider.yml +0 -4
- data/lib/starter_web/_data/modules/navigator_menu.yml +31 -25
- data/lib/starter_web/_includes/attributes.asciidoc +2 -0
- data/lib/starter_web/_plugins/lunr_index.rb +1 -1
- data/lib/starter_web/assets/images/modules/attics/1920x1280/ben-kolde.jpg +0 -0
- data/lib/starter_web/assets/images/modules/attics/1920x1280/braden-collum.jpg +0 -0
- data/lib/starter_web/assets/images/modules/attics/1920x1280/ev.jpg +0 -0
- data/lib/starter_web/assets/images/modules/attics/1920x1280/firmbee-com.jpg +0 -0
- data/lib/starter_web/assets/images/modules/attics/1920x1280/max-harlynking.jpg +0 -0
- data/lib/starter_web/assets/images/modules/attics/guillaume-bolduc-1920x1280.jpg +0 -0
- data/lib/starter_web/assets/images/modules/attics/spacex-1920x1280.jpg +0 -0
- data/lib/starter_web/assets/videos/headers/{still → present_videos/still}/underground-broadway.jpg +0 -0
- data/lib/starter_web/assets/videos/headers/present_videos/underground-broadway.mp4 +0 -0
- data/lib/starter_web/collections/asciidoc_skeletons/simple-post/_posts/yyyy-mm-dd-your-post-name.asciidoc +3 -1
- data/lib/starter_web/collections/posts/public/featured/_posts/2021-01-01-about-cookies.adoc +3 -0
- data/lib/starter_web/collections/posts/public/featured/_posts/2021-02-01-site-generators.adoc +2 -3
- data/lib/starter_web/collections/posts/public/featured/_posts/2022-02-01-about-j1.adoc +3 -0
- data/lib/starter_web/collections/posts/public/series/_posts/2020-01-01-post-wiki-series.adoc +3 -0
- data/lib/starter_web/collections/posts/public/series/_posts/2020-01-02-post-wiki-series.adoc +3 -0
- data/lib/starter_web/collections/posts/public/series/_posts/2020-01-03-post-wiki-series.adoc +3 -0
- data/lib/starter_web/index.html +41 -7
- data/lib/starter_web/package.json +2 -2
- data/lib/starter_web/pages/public/about/features.adoc +119 -0
- data/lib/starter_web/pages/public/about/reporting_issues.adoc +78 -0
- data/lib/starter_web/pages/public/about/{about_site.adoc → site.adoc} +20 -15
- data/lib/starter_web/pages/public/asciidoc_skeletons/documentation/documentation.adoc +3 -0
- data/lib/starter_web/pages/public/asciidoc_skeletons/multi-document/multi.adoc +3 -0
- data/lib/starter_web/pages/public/asciidoc_skeletons/simple-document/simple.adoc +3 -0
- data/lib/starter_web/pages/public/blog/navigator/archive/categoryview.html +3 -0
- data/lib/starter_web/pages/public/blog/navigator/archive/dateview.html +4 -1
- data/lib/starter_web/pages/public/blog/navigator/archive/tagview.html +4 -1
- data/lib/starter_web/pages/public/blog/navigator/archive.html +4 -1
- data/lib/starter_web/pages/public/blog/navigator/index.html +4 -1
- data/lib/starter_web/pages/public/features/general.adoc +5 -1
- data/lib/starter_web/pages/public/features/template.adoc +4 -0
- data/lib/starter_web/pages/public/jupyter/examples/distributed/j1-circular-times-table.adoc +3 -0
- data/lib/starter_web/pages/public/jupyter/examples/distributed/j1-common-used-widgets.adoc +3 -0
- data/lib/starter_web/pages/public/jupyter/examples/distributed/j1-odes-in-python.adoc +3 -0
- data/lib/starter_web/pages/public/jupyter/examples/localized/j1_climate-change-forecast.adoc +3 -0
- data/lib/starter_web/pages/public/jupyter/notebooks/textbooks/j1_interactive_widgets.html +512 -512
- data/lib/starter_web/pages/public/jupyter/notebooks/textbooks/j1_nbi_widgets.html +629 -629
- data/lib/starter_web/pages/public/jupyter/notebooks/textbooks/j1_nbi_widgets_bar_chart.html +95 -95
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- data/lib/starter_web/pages/public/learn/quickstart.adoc +4 -1
- data/lib/starter_web/pages/public/learn/roundtrip/100_present_images.adoc +4 -1
- data/lib/starter_web/pages/public/learn/roundtrip/100_present_videos.adoc +16 -5
- data/lib/starter_web/pages/public/learn/roundtrip/200_typography.adoc +3 -0
- data/lib/starter_web/pages/public/learn/roundtrip/300_icon_fonts.adoc +3 -0
- data/lib/starter_web/pages/public/learn/roundtrip/400_asciidoc_extensions.adoc +3 -0
- data/lib/starter_web/pages/public/learn/roundtrip/410_bs_modals_extentions.adoc +3 -0
- data/lib/starter_web/pages/public/learn/roundtrip/420_responsive_tables_extensions.adoc +3 -0
- data/lib/starter_web/pages/public/learn/roundtrip/500_themes.adoc +3 -0
- data/lib/starter_web/pages/public/learn/roundtrip/600_quicksearch.adoc +6 -2
- data/lib/starter_web/pages/public/learn/where_to_go.adoc +3 -0
- data/lib/starter_web/pages/public/legal/de/100_copyright.adoc +3 -0
- data/lib/starter_web/pages/public/legal/de/100_impress.adoc +3 -0
- data/lib/starter_web/pages/public/legal/de/300_privacy.adoc +3 -0
- data/lib/starter_web/pages/public/legal/de/400_comment_policy.adoc +3 -0
- data/lib/starter_web/pages/public/legal/en/100_copyright.adoc +9 -1
- data/lib/starter_web/pages/public/legal/en/200_impress.adoc +10 -2
- data/lib/starter_web/pages/public/legal/en/300_privacy.adoc +3 -0
- data/lib/starter_web/pages/public/legal/en/400_comment_policy.adoc +3 -0
- data/lib/starter_web/pages/public/panels/intro_panel/panel.adoc +3 -0
- data/lib/starter_web/pages/public/plans/plans.adoc +3 -0
- data/lib/starter_web/pages/public/previewer/preview_bootstrap_theme.adoc +4 -0
- data/lib/starter_web/pages/public/se/se-fake.adoc +4 -0
- data/lib/starter_web/utilsrv/_defaults/package.json +1 -1
- data/lib/starter_web/utilsrv/package.json +1 -1
- metadata +18 -365
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- data/lib/starter_web/pages/public/_jupyter/docs/_includes/attributes.asciidoc +0 -67
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- data/lib/starter_web/pages/public/_jupyter/docs/j1-nbinteract.adoc +0 -638
- data/lib/starter_web/pages/public/_jupyter/docs/jupyterhub.adoc +0 -248
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- data/lib/starter_web/pages/public/_jupyter/notebooks/j1/.ipynb_checkpoints/j1_docs_example_dynamic-checkpoint.ipynb +0 -14478
- data/lib/starter_web/pages/public/_jupyter/notebooks/j1/.ipynb_checkpoints/j1_interactive_widgets-Copy1-checkpoint.ipynb +0 -379
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- data/lib/starter_web/pages/public/_jupyter/notebooks/j1/.ipynb_checkpoints/j1_nbi_widgets-checkpoint.ipynb +0 -523
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"application/vnd.bokehjs_load.v0+json": "(function(root) {\n function now() {\n return new Date();\n }\n\n const force = true;\n\n if (typeof root._bokeh_onload_callbacks === \"undefined\" || force === true) {\n root._bokeh_onload_callbacks = [];\n root._bokeh_is_loading = undefined;\n }\n\n\n if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n const NB_LOAD_WARNING = {'data': {'text/html':\n \"<div style='background-color: #fdd'>\\n\"+\n \"<p>\\n\"+\n \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n \"</p>\\n\"+\n \"<ul>\\n\"+\n \"<li>re-rerun `output_notebook()` to attempt to load from CDN again, or</li>\\n\"+\n \"<li>use INLINE resources instead, as so:</li>\\n\"+\n \"</ul>\\n\"+\n \"<code>\\n\"+\n \"from bokeh.resources import INLINE\\n\"+\n \"output_notebook(resources=INLINE)\\n\"+\n \"</code>\\n\"+\n \"</div>\"}};\n\n function display_loaded() {\n const el = document.getElementById(\"1002\");\n if (el != null) {\n el.textContent = \"BokehJS is loading...\";\n }\n if (root.Bokeh !== undefined) {\n if (el != null) {\n el.textContent = \"BokehJS \" + root.Bokeh.version + \" successfully loaded.\";\n }\n } else if (Date.now() < root._bokeh_timeout) {\n setTimeout(display_loaded, 100)\n }\n }\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) {\n if (callback != null)\n callback();\n });\n } finally {\n delete root._bokeh_onload_callbacks\n }\n console.debug(\"Bokeh: all callbacks have finished\");\n }\n\n function load_libs(css_urls, js_urls, callback) {\n if (css_urls == null) css_urls = [];\n if (js_urls == null) js_urls = [];\n\n root._bokeh_onload_callbacks.push(callback);\n if (root._bokeh_is_loading > 0) {\n console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n return null;\n }\n if (js_urls == null || js_urls.length === 0) {\n run_callbacks();\n return null;\n }\n console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n root._bokeh_is_loading = css_urls.length + js_urls.length;\n\n function on_load() {\n root._bokeh_is_loading--;\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n run_callbacks()\n }\n }\n\n function on_error(url) {\n console.error(\"failed to load \" + url);\n }\n\n for (let i = 0; i < css_urls.length; i++) {\n const url = css_urls[i];\n const element = document.createElement(\"link\");\n element.onload = on_load;\n element.onerror = on_error.bind(null, url);\n element.rel = \"stylesheet\";\n element.type = \"text/css\";\n element.href = url;\n console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n document.body.appendChild(element);\n }\n\n for (let i = 0; i < js_urls.length; i++) {\n const url = js_urls[i];\n const element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error.bind(null, url);\n element.async = false;\n element.src = url;\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n };\n\n function inject_raw_css(css) {\n const element = document.createElement(\"style\");\n element.appendChild(document.createTextNode(css));\n document.body.appendChild(element);\n }\n\n const js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-2.4.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-gl-2.4.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-2.4.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-2.4.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-mathjax-2.4.3.min.js\"];\n const css_urls = [];\n\n const inline_js = [ function(Bokeh) {\n Bokeh.set_log_level(\"info\");\n },\nfunction(Bokeh) {\n }\n ];\n\n function run_inline_js() {\n if (root.Bokeh !== undefined || force === true) {\n for (let i = 0; i < inline_js.length; i++) {\n inline_js[i].call(root, root.Bokeh);\n }\nif (force === true) {\n display_loaded();\n }} else if (Date.now() < root._bokeh_timeout) {\n setTimeout(run_inline_js, 100);\n } else if (!root._bokeh_failed_load) {\n console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n root._bokeh_failed_load = true;\n } else if (force !== true) {\n const cell = $(document.getElementById(\"1002\")).parents('.cell').data().cell;\n cell.output_area.append_execute_result(NB_LOAD_WARNING)\n }\n }\n\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: BokehJS loaded, going straight to plotting\");\n run_inline_js();\n } else {\n load_libs(css_urls, js_urls, function() {\n console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n run_inline_js();\n });\n }\n}(window));"
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"from bokeh.io import show, output_notebook\n",
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"## Plotting from NetworkX\n",
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"\n",
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"The easiest way to plot network graphs with Bokeh is to use the `from_networkx` function. This function accepts any NetworkX graph and returns a Bokeh `GraphRenderer` that can be added to a plot. The `GraphRenderer` has `node_renderer` and `edge_renderer` properties that contain the Bokeh renderers that draw the nodes and edges, respectively. \n",
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" function embed_document(root) {\n",
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" const docs_json = {\"99e54df0-baf2-4a27-b383-844ea53d50ee\":{\"defs\":[],\"roots\":{\"references\":[{\"attributes\":{\"renderers\":[{\"id\":\"1008\"}],\"title\":{\"id\":\"1028\"},\"toolbar\":{\"id\":\"1029\"},\"x_range\":{\"id\":\"1003\"},\"x_scale\":{\"id\":\"1026\"},\"y_range\":{\"id\":\"1004\"},\"y_scale\":{\"id\":\"1027\"}},\"id\":\"1005\",\"type\":\"Plot\"},{\"attributes\":{},\"id\":\"1026\",\"type\":\"LinearScale\"},{\"attributes\":{\"end\":2,\"start\":-2},\"id\":\"1004\",\"type\":\"Range1d\"},{\"attributes\":{\"data\":{\"index\":[0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19]},\"selected\":{\"id\":\"1041\"},\"selection_policy\":{\"id\":\"1040\"}},\"id\":\"1010\",\"type\":\"ColumnDataSource\"},{\"attributes\":{\"coordinates\":null,\"data_source\":{\"id\":\"1010\"},\"glyph\":{\"id\":\"1009\"},\"group\":null,\"hover_glyph\":null,\"view\":{\"id\":\"1012\"}},\"id\":\"1011\",\"type\":\"GlyphRenderer\"},{\"attributes\":{},\"id\":\"1043\",\"type\":\"Selection\"},{\"attributes\":{},\"id\":\"1029\",\"type\":\"Toolbar\"},{\"attributes\":{\"fill_color\":{\"value\":\"orange\"},\"size\":{\"value\":20}},\"id\":\"1009\",\"type\":\"Circle\"},{\"attributes\":{},\"id\":\"1042\",\"type\":\"UnionRenderers\"},{\"attributes\":{\"end\":2,\"start\":-2},\"id\":\"1003\",\"type\":\"Range1d\"},{\"attributes\":{\"line_dash\":{\"value\":[2,2]}},\"id\":\"1013\",\"type\":\"MultiLine\"},{\"attributes\":{\"source\":{\"id\":\"1010\"}},\"id\":\"1012\",\"type\":\"CDSView\"},{\"attributes\":{\"coordinates\":null,\"data_source\":{\"id\":\"1014\"},\"glyph\":{\"id\":\"1013\"},\"group\":null,\"hover_glyph\":null,\"view\":{\"id\":\"1016\"}},\"id\":\"1015\",\"type\":\"GlyphRenderer\"},{\"attributes\":{},\"id\":\"1027\",\"type\":\"LinearScale\"},{\"attributes\":{\"data\":{\"end\":[1,19,5,2,16,3,11,4,14,5,9,6,7,15,8,18,9,13,10,11,19,12,13,17,14,15,16,17,18,19],\"start\":[0,0,0,1,1,2,2,3,3,4,4,5,6,6,7,7,8,8,9,10,10,11,12,12,13,14,15,16,17,18]},\"selected\":{\"id\":\"1043\"},\"selection_policy\":{\"id\":\"1042\"}},\"id\":\"1014\",\"type\":\"ColumnDataSource\"},{\"attributes\":{\"coordinates\":null,\"group\":null},\"id\":\"1028\",\"type\":\"Title\"},{\"attributes\":{\"source\":{\"id\":\"1014\"}},\"id\":\"1016\",\"type\":\"CDSView\"},{\"attributes\":{},\"id\":\"1038\",\"type\":\"NodesOnly\"},{\"attributes\":{},\"id\":\"1040\",\"type\":\"UnionRenderers\"},{\"attributes\":{\"coordinates\":null,\"edge_renderer\":{\"id\":\"1015\"},\"group\":null,\"inspection_policy\":{\"id\":\"1039\"},\"layout_provider\":{\"id\":\"1017\"},\"node_renderer\":{\"id\":\"1011\"},\"selection_policy\":{\"id\":\"1038\"}},\"id\":\"1008\",\"type\":\"GraphRenderer\"},{\"attributes\":{},\"id\":\"1039\",\"type\":\"NodesOnly\"},{\"attributes\":{},\"id\":\"1041\",\"type\":\"Selection\"},{\"attributes\":{\"graph_layout\":{\"0\":[-0.3090116186778814,1.4713276589491144],\"1\":[0.6291973604160728,1.8],\"10\":[0.7708078503165311,-0.5835726793043652],\"11\":[1.6867543071999287,-0.1254485913884074],\"12\":[1.380159483630592,-0.972980874858384],\"13\":[0.30211039864483213,-1.4856639537798053],\"14\":[-0.3747847694481658,-0.4162937373558434],\"15\":[-0.776480149958823,0.5802535889665548],\"16\":[0.36577143482781527,1.0769643185669198],\"17\":[0.9879848351156106,0.0132690051189329],\"18\":[0.07507670806425779,-0.4261783203060482],\"19\":[0.3833259869425722,0.412529539936996],\"2\":[1.1357326611886978,0.9313449891734061],\"3\":[-0.07326463681602478,0.43344415338812414],\"4\":[-0.9850447141873108,-0.017278353469085978],\"5\":[-1.3799302680881043,0.9623740755798653],\"6\":[-1.6859857822319355,0.13168238541790797],\"7\":[-1.141700518042085,-0.9099240969417551],\"8\":[-0.6373685741506644,-1.7978587190130495],\"9\":[-0.35334999474591217,-1.0779903886810802]}},\"id\":\"1017\",\"type\":\"StaticLayoutProvider\"}],\"root_ids\":[\"1005\"]},\"title\":\"Bokeh Application\",\"version\":\"2.4.3\"}};\n",
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" const render_items = [{\"docid\":\"99e54df0-baf2-4a27-b383-844ea53d50ee\",\"root_ids\":[\"1005\"],\"roots\":{\"1005\":\"e9510b35-b0ed-4285-9c8b-78fb2a3833c1\"}}];\n",
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" root.Bokeh.embed.embed_items_notebook(docs_json, render_items);\n",
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" }\n",
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" embed_document(root);\n",
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" } else {\n",
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" let attempts = 0;\n",
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" const timer = setInterval(function(root) {\n",
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" attempts++;\n",
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" if (attempts > 100) {\n",
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" clearInterval(timer);\n",
|
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" console.log(\"Bokeh: ERROR: Unable to run BokehJS code because BokehJS library is missing\");\n",
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" }\n",
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" }\n",
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" }, 10, root)\n",
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" }\n",
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"})(window);"
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},
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"metadata": {
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"application/vnd.bokehjs_exec.v0+json": {
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"id": "1005"
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}
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}
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"source": [
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"import networkx as nx\n",
|
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|
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"from bokeh.models import Range1d, Plot\n",
|
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|
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"from bokeh.plotting import from_networkx\n",
|
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"\n",
|
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|
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"G = nx.desargues_graph()\n",
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|
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"\n",
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"# We could use figure here but don't want all the axes and titles\n",
|
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|
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"plot = Plot(x_range=Range1d(-2, 2), y_range=Range1d(-2, 2))\n",
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"\n",
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"# Create a Bokeh graph from the NetworkX input using nx.spring_layout\n",
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|
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"graph = from_networkx(G, nx.spring_layout, scale=1.8, center=(0,0))\n",
|
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|
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"plot.renderers.append(graph)\n",
|
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|
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"\n",
|
423
|
-
"# Set some of the default node glyph (Circle) properties\n",
|
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|
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"graph.node_renderer.glyph.update(size=20, fill_color=\"orange\")\n",
|
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|
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"\n",
|
426
|
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"# Set some edge properties too\n",
|
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|
-
"graph.edge_renderer.glyph.line_dash = [2,2]\n",
|
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|
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"\n",
|
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|
-
"show(plot)"
|
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|
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]
|
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|
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},
|
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|
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{
|
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|
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"cell_type": "code",
|
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|
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"execution_count": 3,
|
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|
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"metadata": {},
|
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|
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"outputs": [],
|
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|
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"source": [
|
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|
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"# Exercise: try a different NetworkX layout, and set some properies on `graph.edge_renderer.glyph` \n",
|
439
|
-
"# and `graph.node_renderer.glyph`\n"
|
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|
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]
|
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|
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},
|
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{
|
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"cell_type": "markdown",
|
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"metadata": {},
|
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|
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"source": [
|
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|
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"## Adding Extra Data Columns.\n",
|
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|
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"\n",
|
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|
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"The `node_renderer` and `edge_renderer` properties of the graph renderer each have a `data_source` that is a standard `ColumnDataSource` that you can add new data to, e.g. to drive a hover tool, or to specify colors for the renderer. The example below demonstates both."
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"\n",
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" <div class=\"bk-root\" id=\"ac0c908b-ed73-4616-9157-81506e350d0d\" data-root-id=\"1156\"></div>\n"
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]
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{
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"data": {
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"application/javascript": [
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"(function(root) {\n",
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" function embed_document(root) {\n",
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" const docs_json = {\"943b21a8-179c-4680-96cc-2c3d84c446f2\":{\"defs\":[],\"roots\":{\"references\":[{\"attributes\":{\"renderers\":[{\"id\":\"1159\"}],\"title\":{\"id\":\"1203\"},\"toolbar\":{\"id\":\"1182\"},\"x_range\":{\"id\":\"1154\"},\"x_scale\":{\"id\":\"1201\"},\"y_range\":{\"id\":\"1155\"},\"y_scale\":{\"id\":\"1202\"}},\"id\":\"1156\",\"type\":\"Plot\"},{\"attributes\":{\"coordinates\":null,\"group\":null},\"id\":\"1203\",\"type\":\"Title\"},{\"attributes\":{\"callback\":null,\"tooltips\":\"index: @index\"},\"id\":\"1181\",\"type\":\"HoverTool\"},{\"attributes\":{},\"id\":\"1214\",\"type\":\"NodesOnly\"},{\"attributes\":{\"coordinates\":null,\"edge_renderer\":{\"id\":\"1166\"},\"group\":null,\"inspection_policy\":{\"id\":\"1214\"},\"layout_provider\":{\"id\":\"1168\"},\"node_renderer\":{\"id\":\"1162\"},\"selection_policy\":{\"id\":\"1213\"}},\"id\":\"1159\",\"type\":\"GraphRenderer\"},{\"attributes\":{},\"id\":\"1216\",\"type\":\"Selection\"},{\"attributes\":{},\"id\":\"1213\",\"type\":\"NodesOnly\"},{\"attributes\":{\"source\":{\"id\":\"1165\"}},\"id\":\"1167\",\"type\":\"CDSView\"},{\"attributes\":{},\"id\":\"1215\",\"type\":\"UnionRenderers\"},{\"attributes\":{},\"id\":\"1201\",\"type\":\"LinearScale\"},{\"attributes\":{\"fill_color\":{\"field\":\"colors\"},\"size\":{\"value\":20}},\"id\":\"1160\",\"type\":\"Circle\"},{\"attributes\":{},\"id\":\"1218\",\"type\":\"Selection\"},{\"attributes\":{\"data\":{\"colors\":[\"#1f77b4\",\"#aec7e8\",\"#ff7f0e\",\"#ffbb78\",\"#2ca02c\",\"#98df8a\",\"#d62728\",\"#ff9896\",\"#9467bd\",\"#c5b0d5\",\"#8c564b\",\"#c49c94\",\"#e377c2\",\"#f7b6d2\",\"#7f7f7f\",\"#c7c7c7\",\"#bcbd22\",\"#dbdb8d\",\"#17becf\",\"#9edae5\"],\"index\":[0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19]},\"selected\":{\"id\":\"1216\"},\"selection_policy\":{\"id\":\"1215\"}},\"id\":\"1161\",\"type\":\"ColumnDataSource\"},{\"attributes\":{\"graph_layout\":{\"0\":[1.2513353248855137,-0.8578980661161456],\"1\":[1.4033668593097461,0.0050420003691263],\"10\":[-0.7715444952232617,-0.3474002864966111],\"11\":[-0.6381268758747044,0.5914453204459119],\"12\":[-0.6112044427531907,1.5868814897729537],\"13\":[-1.2521175220081486,0.846401969457995],\"14\":[-0.44135254296849663,0.012612226573467101],\"15\":[0.7686911389062928,0.3513358818821906],\"16\":[1.325462553240648,1.0744761767744528],\"17\":[0.49988136768121183,1.7965876775720755],\"18\":[0.38880689273101354,1.0462638218726472],\"19\":[0.4561803788592891,-0.02350269204231413],\"2\":[0.17396393763157358,-0.3095422868047834],\"3\":[-0.3827993342646065,-1.0492189362435556],\"4\":[-0.5127751155383679,-1.8],\"5\":[0.6002445036483184,-1.5932465809898373],\"6\":[0.6346392825020158,-0.5954571897100698],\"7\":[-0.17339797046855515,0.31644050520529754],\"8\":[-1.3923756911110223,0.005300025570018121],\"9\":[-1.3268782491852684,-1.056521057092818]}},\"id\":\"1168\",\"type\":\"StaticLayoutProvider\"},{\"attributes\":{\"coordinates\":null,\"data_source\":{\"id\":\"1161\"},\"glyph\":{\"id\":\"1160\"},\"group\":null,\"hover_glyph\":null,\"view\":{\"id\":\"1163\"}},\"id\":\"1162\",\"type\":\"GlyphRenderer\"},{\"attributes\":{\"coordinates\":null,\"data_source\":{\"id\":\"1165\"},\"glyph\":{\"id\":\"1164\"},\"group\":null,\"hover_glyph\":null,\"view\":{\"id\":\"1167\"}},\"id\":\"1166\",\"type\":\"GlyphRenderer\"},{\"attributes\":{},\"id\":\"1164\",\"type\":\"MultiLine\"},{\"attributes\":{},\"id\":\"1202\",\"type\":\"LinearScale\"},{\"attributes\":{\"end\":2,\"start\":-2},\"id\":\"1154\",\"type\":\"Range1d\"},{\"attributes\":{\"source\":{\"id\":\"1161\"}},\"id\":\"1163\",\"type\":\"CDSView\"},{\"attributes\":{},\"id\":\"1217\",\"type\":\"UnionRenderers\"},{\"attributes\":{\"tools\":[{\"id\":\"1181\"}]},\"id\":\"1182\",\"type\":\"Toolbar\"},{\"attributes\":{\"end\":2,\"start\":-2},\"id\":\"1155\",\"type\":\"Range1d\"},{\"attributes\":{\"data\":{\"end\":[1,19,5,2,16,3,11,4,14,5,9,6,7,15,8,18,9,13,10,11,19,12,13,17,14,15,16,17,18,19],\"start\":[0,0,0,1,1,2,2,3,3,4,4,5,6,6,7,7,8,8,9,10,10,11,12,12,13,14,15,16,17,18]},\"selected\":{\"id\":\"1218\"},\"selection_policy\":{\"id\":\"1217\"}},\"id\":\"1165\",\"type\":\"ColumnDataSource\"}],\"root_ids\":[\"1156\"]},\"title\":\"Bokeh Application\",\"version\":\"2.4.3\"}};\n",
|
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" const render_items = [{\"docid\":\"943b21a8-179c-4680-96cc-2c3d84c446f2\",\"root_ids\":[\"1156\"],\"roots\":{\"1156\":\"ac0c908b-ed73-4616-9157-81506e350d0d\"}}];\n",
|
473
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" root.Bokeh.embed.embed_items_notebook(docs_json, render_items);\n",
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" }\n",
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" if (root.Bokeh !== undefined) {\n",
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" embed_document(root);\n",
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" } else {\n",
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" let attempts = 0;\n",
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" const timer = setInterval(function(root) {\n",
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" if (root.Bokeh !== undefined) {\n",
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" clearInterval(timer);\n",
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" embed_document(root);\n",
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" } else {\n",
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" attempts++;\n",
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" if (attempts > 100) {\n",
|
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" clearInterval(timer);\n",
|
487
|
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" console.log(\"Bokeh: ERROR: Unable to run BokehJS code because BokehJS library is missing\");\n",
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" }\n",
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" }\n",
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" }, 10, root)\n",
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" }\n",
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"})(window);"
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],
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"application/vnd.bokehjs_exec.v0+json": ""
|
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},
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"metadata": {
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"application/vnd.bokehjs_exec.v0+json": {
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"id": "1156"
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}
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},
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"output_type": "display_data"
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}
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],
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"source": [
|
505
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"from bokeh.models import HoverTool\n",
|
506
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"from bokeh.palettes import Category20_20\n",
|
507
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-
"\n",
|
508
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"G = nx.desargues_graph() # always 20 nodes\n",
|
509
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-
"\n",
|
510
|
-
"# We could use figure here but don't want all the axes and titles\n",
|
511
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"plot = Plot(x_range=Range1d(-2, 2), y_range=Range1d(-2, 2))\n",
|
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"\n",
|
513
|
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"# Create a Bokeh graph from the NetworkX input using nx.spring_layout\n",
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"graph = from_networkx(G, nx.spring_layout, scale=1.8, center=(0,0))\n",
|
515
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-
"plot.renderers.append(graph)\n",
|
516
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-
"\n",
|
517
|
-
"# Add some new columns to the node renderer data source\n",
|
518
|
-
"graph.node_renderer.data_source.data['index'] = list(range(len(G)))\n",
|
519
|
-
"graph.node_renderer.data_source.data['colors'] = Category20_20\n",
|
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-
"\n",
|
521
|
-
"graph.node_renderer.glyph.update(size=20, fill_color=\"colors\")\n",
|
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|
-
"\n",
|
523
|
-
"plot.add_tools(HoverTool(tooltips=\"index: @index\"))\n",
|
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-
"\n",
|
525
|
-
"show(plot)"
|
526
|
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]
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},
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{
|
529
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-
"cell_type": "code",
|
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"execution_count": 5,
|
531
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-
"metadata": {},
|
532
|
-
"outputs": [],
|
533
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-
"source": [
|
534
|
-
"# Exercise: Add your own columns for other node or edge properties e.g. fill_alpha or line_color,\n",
|
535
|
-
"# or to show other fields in a tooltoip\n"
|
536
|
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]
|
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-
},
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{
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-
"cell_type": "markdown",
|
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|
-
"metadata": {},
|
541
|
-
"source": [
|
542
|
-
"## Inspection and Selection Policies\n",
|
543
|
-
"\n",
|
544
|
-
"Bokeh graph renderers have `inspection_policy` and `selection_policy` properties. These can be used to control how hover inspections highlight the graph, or how selection tools make selections. These properties may be set to any of the inpection policies in `bokeh.graphs`. For instance, if a user hovers over a node, you may wish to highlight all the associated edges as well. This can be accomplished by setting the inspection policy:\n",
|
545
|
-
"\n",
|
546
|
-
" graph.inspection_policy = NodesAndLinkedEdges()\n",
|
547
|
-
" \n",
|
548
|
-
"as the example below demonstrates."
|
549
|
-
]
|
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|
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},
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{
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"cell_type": "code",
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"execution_count": 6,
|
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|
-
"metadata": {},
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"outputs": [
|
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{
|
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"data": {
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|
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"text/html": [
|
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|
-
"\n",
|
560
|
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" <div class=\"bk-root\" id=\"8adf30fb-428e-4888-bcdc-aa379e0647b7\" data-root-id=\"1331\"></div>\n"
|
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|
-
]
|
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},
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"metadata": {},
|
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"output_type": "display_data"
|
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},
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{
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"data": {
|
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|
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"application/javascript": [
|
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|
-
"(function(root) {\n",
|
570
|
-
" function embed_document(root) {\n",
|
571
|
-
" const docs_json = {\"8c271dea-e5bc-49c3-bb1c-d2242d76eb1a\":{\"defs\":[],\"roots\":{\"references\":[{\"attributes\":{\"renderers\":[{\"id\":\"1334\"}],\"title\":{\"id\":\"1406\"},\"toolbar\":{\"id\":\"1367\"},\"x_range\":{\"id\":\"1329\"},\"x_scale\":{\"id\":\"1404\"},\"y_range\":{\"id\":\"1330\"},\"y_scale\":{\"id\":\"1405\"}},\"id\":\"1331\",\"type\":\"Plot\"},{\"attributes\":{},\"id\":\"1364\",\"type\":\"NodesAndLinkedEdges\"},{\"attributes\":{\"coordinates\":null,\"data_source\":{\"id\":\"1336\"},\"glyph\":{\"id\":\"1344\"},\"group\":null,\"hover_glyph\":{\"id\":\"1354\"},\"view\":{\"id\":\"1338\"}},\"id\":\"1337\",\"type\":\"GlyphRenderer\"},{\"attributes\":{\"source\":{\"id\":\"1336\"}},\"id\":\"1338\",\"type\":\"CDSView\"},{\"attributes\":{\"coordinates\":null,\"data_source\":{\"id\":\"1340\"},\"glyph\":{\"id\":\"1349\"},\"group\":null,\"hover_glyph\":{\"id\":\"1359\"},\"view\":{\"id\":\"1342\"}},\"id\":\"1341\",\"type\":\"GlyphRenderer\"},{\"attributes\":{\"callback\":null,\"tooltips\":null},\"id\":\"1366\",\"type\":\"HoverTool\"},{\"attributes\":{\"data\":{\"end\":[8,12,4,14,5,11,4,12,7,10,5,9,12,14,8,7,12,7,11,9,14,12,13,14,13,9,12,13,14,13],\"start\":[0,0,0,1,1,1,2,2,2,2,3,3,3,3,4,4,4,5,5,5,5,5,5,6,6,6,8,9,11,12]},\"selected\":{\"id\":\"1420\"},\"selection_policy\":{\"id\":\"1419\"}},\"id\":\"1340\",\"type\":\"ColumnDataSource\"},{\"attributes\":{\"coordinates\":null,\"group\":null},\"id\":\"1406\",\"type\":\"Title\"},{\"attributes\":{},\"id\":\"1417\",\"type\":\"UnionRenderers\"},{\"attributes\":{\"end\":2,\"start\":-2},\"id\":\"1329\",\"type\":\"Range1d\"},{\"attributes\":{},\"id\":\"1418\",\"type\":\"Selection\"},{\"attributes\":{\"source\":{\"id\":\"1340\"}},\"id\":\"1342\",\"type\":\"CDSView\"},{\"attributes\":{\"fill_color\":{\"value\":\"#2b83ba\"},\"size\":{\"value\":25}},\"id\":\"1344\",\"type\":\"Circle\"},{\"attributes\":{\"end\":2,\"start\":-2},\"id\":\"1330\",\"type\":\"Range1d\"},{\"attributes\":{},\"id\":\"1416\",\"type\":\"NodesOnly\"},{\"attributes\":{\"graph_layout\":{\"0\":[0.645278046770629,-0.9987018745512679],\"1\":[-0.43306831467219686,1.375608772443648],\"10\":[-1.0754020460346072,-1.8],\"11\":[-0.6503728828125933,1.0858467809797117],\"12\":[0.18615021976550677,-0.41067307064769204],\"13\":[0.6096887503315052,0.4156518321817905],\"14\":[-0.005025071494031821,1.1279336754141127],\"2\":[-0.5366648241638303,-1.1022790128622206],\"3\":[0.20479114113645963,0.41292278111078334],\"4\":[-0.010685024859775906,-0.988957603232082],\"5\":[-0.13759197127692246,0.5085301016369252],\"6\":[0.7362617402670019,1.219844596662726],\"7\":[-0.47644367085381184,-0.42959590762611033],\"8\":[0.4046382876031435,-1.257313523116349],\"9\":[0.538445620293525,0.8411824516060239]}},\"id\":\"1343\",\"type\":\"StaticLayoutProvider\"},{\"attributes\":{\"line_alpha\":{\"value\":0.8},\"line_color\":{\"value\":\"#cccccc\"},\"line_width\":{\"value\":2}},\"id\":\"1349\",\"type\":\"MultiLine\"},{\"attributes\":{},\"id\":\"1420\",\"type\":\"Selection\"},{\"attributes\":{\"coordinates\":null,\"edge_renderer\":{\"id\":\"1341\"},\"group\":null,\"inspection_policy\":{\"id\":\"1364\"},\"layout_provider\":{\"id\":\"1343\"},\"node_renderer\":{\"id\":\"1337\"},\"selection_policy\":{\"id\":\"1416\"}},\"id\":\"1334\",\"type\":\"GraphRenderer\"},{\"attributes\":{\"data\":{\"index\":[0,1,2,3,4,5,6,7,8,9,10,11,12,13,14]},\"selected\":{\"id\":\"1418\"},\"selection_policy\":{\"id\":\"1417\"}},\"id\":\"1336\",\"type\":\"ColumnDataSource\"},{\"attributes\":{},\"id\":\"1419\",\"type\":\"UnionRenderers\"},{\"attributes\":{\"tools\":[{\"id\":\"1366\"}]},\"id\":\"1367\",\"type\":\"Toolbar\"},{\"attributes\":{},\"id\":\"1405\",\"type\":\"LinearScale\"},{\"attributes\":{\"fill_color\":{\"value\":\"#abdda4\"},\"size\":{\"value\":25}},\"id\":\"1354\",\"type\":\"Circle\"},{\"attributes\":{\"line_color\":{\"value\":\"#abdda4\"},\"line_width\":{\"value\":4}},\"id\":\"1359\",\"type\":\"MultiLine\"},{\"attributes\":{},\"id\":\"1404\",\"type\":\"LinearScale\"}],\"root_ids\":[\"1331\"]},\"title\":\"Bokeh Application\",\"version\":\"2.4.3\"}};\n",
|
572
|
-
" const render_items = [{\"docid\":\"8c271dea-e5bc-49c3-bb1c-d2242d76eb1a\",\"root_ids\":[\"1331\"],\"roots\":{\"1331\":\"8adf30fb-428e-4888-bcdc-aa379e0647b7\"}}];\n",
|
573
|
-
" root.Bokeh.embed.embed_items_notebook(docs_json, render_items);\n",
|
574
|
-
" }\n",
|
575
|
-
" if (root.Bokeh !== undefined) {\n",
|
576
|
-
" embed_document(root);\n",
|
577
|
-
" } else {\n",
|
578
|
-
" let attempts = 0;\n",
|
579
|
-
" const timer = setInterval(function(root) {\n",
|
580
|
-
" if (root.Bokeh !== undefined) {\n",
|
581
|
-
" clearInterval(timer);\n",
|
582
|
-
" embed_document(root);\n",
|
583
|
-
" } else {\n",
|
584
|
-
" attempts++;\n",
|
585
|
-
" if (attempts > 100) {\n",
|
586
|
-
" clearInterval(timer);\n",
|
587
|
-
" console.log(\"Bokeh: ERROR: Unable to run BokehJS code because BokehJS library is missing\");\n",
|
588
|
-
" }\n",
|
589
|
-
" }\n",
|
590
|
-
" }, 10, root)\n",
|
591
|
-
" }\n",
|
592
|
-
"})(window);"
|
593
|
-
],
|
594
|
-
"application/vnd.bokehjs_exec.v0+json": ""
|
595
|
-
},
|
596
|
-
"metadata": {
|
597
|
-
"application/vnd.bokehjs_exec.v0+json": {
|
598
|
-
"id": "1331"
|
599
|
-
}
|
600
|
-
},
|
601
|
-
"output_type": "display_data"
|
602
|
-
}
|
603
|
-
],
|
604
|
-
"source": [
|
605
|
-
"from bokeh.models.graphs import NodesAndLinkedEdges\n",
|
606
|
-
"from bokeh.models import Circle, HoverTool, MultiLine\n",
|
607
|
-
"\n",
|
608
|
-
"G = nx.gnm_random_graph(15, 30)\n",
|
609
|
-
"\n",
|
610
|
-
"# We could use figure here but don't want all the axes and titles\n",
|
611
|
-
"plot = Plot(x_range=Range1d(-2, 2), y_range=Range1d(-2 ,2))\n",
|
612
|
-
"\n",
|
613
|
-
"# Create a Bokeh graph from the NetworkX input using nx.spring_layout\n",
|
614
|
-
"graph = from_networkx(G, nx.spring_layout, scale=1.8, center=(0,0))\n",
|
615
|
-
"plot.renderers.append(graph)\n",
|
616
|
-
"\n",
|
617
|
-
"# Blue circles for nodes, and light grey lines for edges\n",
|
618
|
-
"graph.node_renderer.glyph = Circle(size=25, fill_color='#2b83ba')\n",
|
619
|
-
"graph.edge_renderer.glyph = MultiLine(line_color=\"#cccccc\", line_alpha=0.8, line_width=2)\n",
|
620
|
-
"\n",
|
621
|
-
"# green hover for both nodes and edges\n",
|
622
|
-
"graph.node_renderer.hover_glyph = Circle(size=25, fill_color='#abdda4')\n",
|
623
|
-
"graph.edge_renderer.hover_glyph = MultiLine(line_color='#abdda4', line_width=4)\n",
|
624
|
-
"\n",
|
625
|
-
"# When we hover over nodes, highlight adjecent edges too\n",
|
626
|
-
"graph.inspection_policy = NodesAndLinkedEdges()\n",
|
627
|
-
"\n",
|
628
|
-
"plot.add_tools(HoverTool(tooltips=None))\n",
|
629
|
-
"\n",
|
630
|
-
"show(plot)"
|
631
|
-
]
|
632
|
-
},
|
633
|
-
{
|
634
|
-
"cell_type": "code",
|
635
|
-
"execution_count": 7,
|
636
|
-
"metadata": {},
|
637
|
-
"outputs": [],
|
638
|
-
"source": [
|
639
|
-
"# Exercise: try a different inspection (or selection) policy like NodesOnly or EdgesAndLinkedNodes\n"
|
640
|
-
]
|
641
|
-
},
|
642
|
-
{
|
643
|
-
"cell_type": "markdown",
|
644
|
-
"metadata": {},
|
645
|
-
"source": [
|
646
|
-
"# Next Section"
|
647
|
-
]
|
648
|
-
},
|
649
|
-
{
|
650
|
-
"cell_type": "markdown",
|
651
|
-
"metadata": {},
|
652
|
-
"source": [
|
653
|
-
"Click on this link to go to the next notebook: [09 - Geographic Plots](09%20-%20Geographic%20Plots.ipynb).\n",
|
654
|
-
"\n",
|
655
|
-
"To go back to the overview, click [here](00%20-%20Introduction%20and%20Setup.ipynb)."
|
656
|
-
]
|
657
|
-
}
|
658
|
-
],
|
659
|
-
"metadata": {
|
660
|
-
"kernelspec": {
|
661
|
-
"display_name": "Python 3",
|
662
|
-
"language": "python",
|
663
|
-
"name": "python3"
|
664
|
-
},
|
665
|
-
"language_info": {
|
666
|
-
"codemirror_mode": {
|
667
|
-
"name": "ipython",
|
668
|
-
"version": 3
|
669
|
-
},
|
670
|
-
"file_extension": ".py",
|
671
|
-
"mimetype": "text/x-python",
|
672
|
-
"name": "python",
|
673
|
-
"nbconvert_exporter": "python",
|
674
|
-
"pygments_lexer": "ipython3",
|
675
|
-
"version": "3.7.9"
|
676
|
-
}
|
677
|
-
},
|
678
|
-
"nbformat": 4,
|
679
|
-
"nbformat_minor": 4
|
680
|
-
}
|