isotree 0.2.2 → 0.3.0
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- checksums.yaml +4 -4
- data/CHANGELOG.md +8 -1
- data/LICENSE.txt +2 -2
- data/README.md +32 -14
- data/ext/isotree/ext.cpp +144 -31
- data/ext/isotree/extconf.rb +7 -7
- data/lib/isotree/isolation_forest.rb +110 -30
- data/lib/isotree/version.rb +1 -1
- data/vendor/isotree/LICENSE +1 -1
- data/vendor/isotree/README.md +165 -27
- data/vendor/isotree/include/isotree.hpp +2111 -0
- data/vendor/isotree/include/isotree_oop.hpp +394 -0
- data/vendor/isotree/inst/COPYRIGHTS +62 -0
- data/vendor/isotree/src/RcppExports.cpp +525 -52
- data/vendor/isotree/src/Rwrapper.cpp +1931 -268
- data/vendor/isotree/src/c_interface.cpp +953 -0
- data/vendor/isotree/src/crit.hpp +4232 -0
- data/vendor/isotree/src/dist.hpp +1886 -0
- data/vendor/isotree/src/exp_depth_table.hpp +134 -0
- data/vendor/isotree/src/extended.hpp +1444 -0
- data/vendor/isotree/src/external_facing_generic.hpp +399 -0
- data/vendor/isotree/src/fit_model.hpp +2401 -0
- data/vendor/isotree/src/{dealloc.cpp → headers_joined.hpp} +38 -22
- data/vendor/isotree/src/helpers_iforest.hpp +813 -0
- data/vendor/isotree/src/{impute.cpp → impute.hpp} +353 -122
- data/vendor/isotree/src/indexer.cpp +515 -0
- data/vendor/isotree/src/instantiate_template_headers.cpp +118 -0
- data/vendor/isotree/src/instantiate_template_headers.hpp +240 -0
- data/vendor/isotree/src/isoforest.hpp +1659 -0
- data/vendor/isotree/src/isotree.hpp +1804 -392
- data/vendor/isotree/src/isotree_exportable.hpp +99 -0
- data/vendor/isotree/src/merge_models.cpp +159 -16
- data/vendor/isotree/src/mult.hpp +1321 -0
- data/vendor/isotree/src/oop_interface.cpp +842 -0
- data/vendor/isotree/src/oop_interface.hpp +278 -0
- data/vendor/isotree/src/other_helpers.hpp +219 -0
- data/vendor/isotree/src/predict.hpp +1932 -0
- data/vendor/isotree/src/python_helpers.hpp +134 -0
- data/vendor/isotree/src/ref_indexer.hpp +154 -0
- data/vendor/isotree/src/robinmap/LICENSE +21 -0
- data/vendor/isotree/src/robinmap/README.md +483 -0
- data/vendor/isotree/src/robinmap/include/tsl/robin_growth_policy.h +406 -0
- data/vendor/isotree/src/robinmap/include/tsl/robin_hash.h +1620 -0
- data/vendor/isotree/src/robinmap/include/tsl/robin_map.h +807 -0
- data/vendor/isotree/src/robinmap/include/tsl/robin_set.h +660 -0
- data/vendor/isotree/src/serialize.cpp +4300 -139
- data/vendor/isotree/src/sql.cpp +141 -59
- data/vendor/isotree/src/subset_models.cpp +174 -0
- data/vendor/isotree/src/utils.hpp +3808 -0
- data/vendor/isotree/src/xoshiro.hpp +467 -0
- data/vendor/isotree/src/ziggurat.hpp +405 -0
- metadata +38 -104
- data/vendor/cereal/LICENSE +0 -24
- data/vendor/cereal/README.md +0 -85
- data/vendor/cereal/include/cereal/access.hpp +0 -351
- data/vendor/cereal/include/cereal/archives/adapters.hpp +0 -163
- data/vendor/cereal/include/cereal/archives/binary.hpp +0 -169
- data/vendor/cereal/include/cereal/archives/json.hpp +0 -1019
- data/vendor/cereal/include/cereal/archives/portable_binary.hpp +0 -334
- data/vendor/cereal/include/cereal/archives/xml.hpp +0 -956
- data/vendor/cereal/include/cereal/cereal.hpp +0 -1089
- data/vendor/cereal/include/cereal/details/helpers.hpp +0 -422
- data/vendor/cereal/include/cereal/details/polymorphic_impl.hpp +0 -796
- data/vendor/cereal/include/cereal/details/polymorphic_impl_fwd.hpp +0 -65
- data/vendor/cereal/include/cereal/details/static_object.hpp +0 -127
- data/vendor/cereal/include/cereal/details/traits.hpp +0 -1411
- data/vendor/cereal/include/cereal/details/util.hpp +0 -84
- data/vendor/cereal/include/cereal/external/base64.hpp +0 -134
- data/vendor/cereal/include/cereal/external/rapidjson/allocators.h +0 -284
- data/vendor/cereal/include/cereal/external/rapidjson/cursorstreamwrapper.h +0 -78
- data/vendor/cereal/include/cereal/external/rapidjson/document.h +0 -2652
- data/vendor/cereal/include/cereal/external/rapidjson/encodedstream.h +0 -299
- data/vendor/cereal/include/cereal/external/rapidjson/encodings.h +0 -716
- data/vendor/cereal/include/cereal/external/rapidjson/error/en.h +0 -74
- data/vendor/cereal/include/cereal/external/rapidjson/error/error.h +0 -161
- data/vendor/cereal/include/cereal/external/rapidjson/filereadstream.h +0 -99
- data/vendor/cereal/include/cereal/external/rapidjson/filewritestream.h +0 -104
- data/vendor/cereal/include/cereal/external/rapidjson/fwd.h +0 -151
- data/vendor/cereal/include/cereal/external/rapidjson/internal/biginteger.h +0 -290
- data/vendor/cereal/include/cereal/external/rapidjson/internal/diyfp.h +0 -271
- data/vendor/cereal/include/cereal/external/rapidjson/internal/dtoa.h +0 -245
- data/vendor/cereal/include/cereal/external/rapidjson/internal/ieee754.h +0 -78
- data/vendor/cereal/include/cereal/external/rapidjson/internal/itoa.h +0 -308
- data/vendor/cereal/include/cereal/external/rapidjson/internal/meta.h +0 -186
- data/vendor/cereal/include/cereal/external/rapidjson/internal/pow10.h +0 -55
- data/vendor/cereal/include/cereal/external/rapidjson/internal/regex.h +0 -740
- data/vendor/cereal/include/cereal/external/rapidjson/internal/stack.h +0 -232
- data/vendor/cereal/include/cereal/external/rapidjson/internal/strfunc.h +0 -69
- data/vendor/cereal/include/cereal/external/rapidjson/internal/strtod.h +0 -290
- data/vendor/cereal/include/cereal/external/rapidjson/internal/swap.h +0 -46
- data/vendor/cereal/include/cereal/external/rapidjson/istreamwrapper.h +0 -128
- data/vendor/cereal/include/cereal/external/rapidjson/memorybuffer.h +0 -70
- data/vendor/cereal/include/cereal/external/rapidjson/memorystream.h +0 -71
- data/vendor/cereal/include/cereal/external/rapidjson/msinttypes/inttypes.h +0 -316
- data/vendor/cereal/include/cereal/external/rapidjson/msinttypes/stdint.h +0 -300
- data/vendor/cereal/include/cereal/external/rapidjson/ostreamwrapper.h +0 -81
- data/vendor/cereal/include/cereal/external/rapidjson/pointer.h +0 -1414
- data/vendor/cereal/include/cereal/external/rapidjson/prettywriter.h +0 -277
- data/vendor/cereal/include/cereal/external/rapidjson/rapidjson.h +0 -656
- data/vendor/cereal/include/cereal/external/rapidjson/reader.h +0 -2230
- data/vendor/cereal/include/cereal/external/rapidjson/schema.h +0 -2497
- data/vendor/cereal/include/cereal/external/rapidjson/stream.h +0 -223
- data/vendor/cereal/include/cereal/external/rapidjson/stringbuffer.h +0 -121
- data/vendor/cereal/include/cereal/external/rapidjson/writer.h +0 -709
- data/vendor/cereal/include/cereal/external/rapidxml/license.txt +0 -52
- data/vendor/cereal/include/cereal/external/rapidxml/manual.html +0 -406
- data/vendor/cereal/include/cereal/external/rapidxml/rapidxml.hpp +0 -2624
- data/vendor/cereal/include/cereal/external/rapidxml/rapidxml_iterators.hpp +0 -175
- data/vendor/cereal/include/cereal/external/rapidxml/rapidxml_print.hpp +0 -428
- data/vendor/cereal/include/cereal/external/rapidxml/rapidxml_utils.hpp +0 -123
- data/vendor/cereal/include/cereal/macros.hpp +0 -154
- data/vendor/cereal/include/cereal/specialize.hpp +0 -139
- data/vendor/cereal/include/cereal/types/array.hpp +0 -79
- data/vendor/cereal/include/cereal/types/atomic.hpp +0 -55
- data/vendor/cereal/include/cereal/types/base_class.hpp +0 -203
- data/vendor/cereal/include/cereal/types/bitset.hpp +0 -176
- data/vendor/cereal/include/cereal/types/boost_variant.hpp +0 -164
- data/vendor/cereal/include/cereal/types/chrono.hpp +0 -72
- data/vendor/cereal/include/cereal/types/common.hpp +0 -129
- data/vendor/cereal/include/cereal/types/complex.hpp +0 -56
- data/vendor/cereal/include/cereal/types/concepts/pair_associative_container.hpp +0 -73
- data/vendor/cereal/include/cereal/types/deque.hpp +0 -62
- data/vendor/cereal/include/cereal/types/forward_list.hpp +0 -68
- data/vendor/cereal/include/cereal/types/functional.hpp +0 -43
- data/vendor/cereal/include/cereal/types/list.hpp +0 -62
- data/vendor/cereal/include/cereal/types/map.hpp +0 -36
- data/vendor/cereal/include/cereal/types/memory.hpp +0 -425
- data/vendor/cereal/include/cereal/types/optional.hpp +0 -66
- data/vendor/cereal/include/cereal/types/polymorphic.hpp +0 -483
- data/vendor/cereal/include/cereal/types/queue.hpp +0 -132
- data/vendor/cereal/include/cereal/types/set.hpp +0 -103
- data/vendor/cereal/include/cereal/types/stack.hpp +0 -76
- data/vendor/cereal/include/cereal/types/string.hpp +0 -61
- data/vendor/cereal/include/cereal/types/tuple.hpp +0 -123
- data/vendor/cereal/include/cereal/types/unordered_map.hpp +0 -36
- data/vendor/cereal/include/cereal/types/unordered_set.hpp +0 -99
- data/vendor/cereal/include/cereal/types/utility.hpp +0 -47
- data/vendor/cereal/include/cereal/types/valarray.hpp +0 -89
- data/vendor/cereal/include/cereal/types/variant.hpp +0 -109
- data/vendor/cereal/include/cereal/types/vector.hpp +0 -112
- data/vendor/cereal/include/cereal/version.hpp +0 -52
- data/vendor/isotree/src/Makevars +0 -4
- data/vendor/isotree/src/crit.cpp +0 -912
- data/vendor/isotree/src/dist.cpp +0 -749
- data/vendor/isotree/src/extended.cpp +0 -790
- data/vendor/isotree/src/fit_model.cpp +0 -1090
- data/vendor/isotree/src/helpers_iforest.cpp +0 -324
- data/vendor/isotree/src/isoforest.cpp +0 -771
- data/vendor/isotree/src/mult.cpp +0 -607
- data/vendor/isotree/src/predict.cpp +0 -853
- data/vendor/isotree/src/utils.cpp +0 -1566
@@ -5,12 +5,16 @@
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using namespace Rcpp;
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#ifdef RCPP_USE_GLOBAL_ROSTREAM
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Rcpp::Rostream<true>& Rcpp::Rcout = Rcpp::Rcpp_cout_get();
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Rcpp::Rostream<false>& Rcpp::Rcerr = Rcpp::Rcpp_cerr_get();
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#endif
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// deserialize_IsoForest
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SEXP deserialize_IsoForest(Rcpp::RawVector src);
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RcppExport SEXP _isotree_deserialize_IsoForest(SEXP srcSEXP) {
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BEGIN_RCPP
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Rcpp::RObject rcpp_result_gen;
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Rcpp::RNGScope rcpp_rngScope_gen;
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Rcpp::traits::input_parameter< Rcpp::RawVector >::type src(srcSEXP);
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rcpp_result_gen = Rcpp::wrap(deserialize_IsoForest(src));
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return rcpp_result_gen;
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@@ -21,7 +25,6 @@ SEXP deserialize_ExtIsoForest(Rcpp::RawVector src);
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RcppExport SEXP _isotree_deserialize_ExtIsoForest(SEXP srcSEXP) {
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BEGIN_RCPP
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Rcpp::RObject rcpp_result_gen;
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Rcpp::RNGScope rcpp_rngScope_gen;
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Rcpp::traits::input_parameter< Rcpp::RawVector >::type src(srcSEXP);
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rcpp_result_gen = Rcpp::wrap(deserialize_ExtIsoForest(src));
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return rcpp_result_gen;
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@@ -32,29 +35,36 @@ SEXP deserialize_Imputer(Rcpp::RawVector src);
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RcppExport SEXP _isotree_deserialize_Imputer(SEXP srcSEXP) {
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BEGIN_RCPP
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Rcpp::RObject rcpp_result_gen;
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Rcpp::RNGScope rcpp_rngScope_gen;
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Rcpp::traits::input_parameter< Rcpp::RawVector >::type src(srcSEXP);
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rcpp_result_gen = Rcpp::wrap(deserialize_Imputer(src));
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return rcpp_result_gen;
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END_RCPP
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}
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// deserialize_Indexer
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SEXP deserialize_Indexer(Rcpp::RawVector src);
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RcppExport SEXP _isotree_deserialize_Indexer(SEXP srcSEXP) {
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BEGIN_RCPP
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Rcpp::RObject rcpp_result_gen;
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Rcpp::traits::input_parameter< Rcpp::RawVector >::type src(srcSEXP);
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rcpp_result_gen = Rcpp::wrap(deserialize_Indexer(src));
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return rcpp_result_gen;
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END_RCPP
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}
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// check_null_ptr_model
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Rcpp::LogicalVector check_null_ptr_model(SEXP ptr_model);
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RcppExport SEXP _isotree_check_null_ptr_model(SEXP ptr_modelSEXP) {
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BEGIN_RCPP
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Rcpp::RObject rcpp_result_gen;
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Rcpp::RNGScope rcpp_rngScope_gen;
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Rcpp::traits::input_parameter< SEXP >::type ptr_model(ptr_modelSEXP);
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rcpp_result_gen = Rcpp::wrap(check_null_ptr_model(ptr_model));
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return rcpp_result_gen;
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END_RCPP
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}
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// fit_model
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Rcpp::List fit_model(Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::IntegerVector ncat, Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr, Rcpp::NumericVector sample_weights, Rcpp::NumericVector col_weights, size_t nrows, size_t ncols_numeric, size_t ncols_categ, size_t ndim, size_t ntry, Rcpp::CharacterVector coef_type, bool coef_by_prop, bool with_replacement, bool weight_as_sample, size_t sample_size, size_t ntrees, size_t max_depth, bool limit_depth, bool penalize_range, bool calc_dist, bool standardize_dist, bool sq_dist, bool calc_depth, bool standardize_depth, bool weigh_by_kurt, double prob_pick_by_gain_avg, double
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RcppExport SEXP _isotree_fit_model(SEXP X_numSEXP, SEXP X_catSEXP, SEXP ncatSEXP, SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP sample_weightsSEXP, SEXP col_weightsSEXP, SEXP nrowsSEXP, SEXP ncols_numericSEXP, SEXP ncols_categSEXP, SEXP ndimSEXP, SEXP ntrySEXP, SEXP coef_typeSEXP, SEXP coef_by_propSEXP, SEXP with_replacementSEXP, SEXP weight_as_sampleSEXP, SEXP sample_sizeSEXP, SEXP ntreesSEXP, SEXP max_depthSEXP, SEXP limit_depthSEXP, SEXP penalize_rangeSEXP, SEXP calc_distSEXP, SEXP standardize_distSEXP, SEXP sq_distSEXP, SEXP calc_depthSEXP, SEXP standardize_depthSEXP, SEXP weigh_by_kurtSEXP, SEXP prob_pick_by_gain_avgSEXP, SEXP
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Rcpp::List fit_model(Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::IntegerVector ncat, Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr, Rcpp::NumericVector sample_weights, Rcpp::NumericVector col_weights, size_t nrows, size_t ncols_numeric, size_t ncols_categ, size_t ndim, size_t ntry, Rcpp::CharacterVector coef_type, bool coef_by_prop, bool with_replacement, bool weight_as_sample, size_t sample_size, size_t ntrees, size_t max_depth, size_t ncols_per_tree, bool limit_depth, bool penalize_range, bool standardize_data, Rcpp::CharacterVector scoring_metric, bool fast_bratio, bool calc_dist, bool standardize_dist, bool sq_dist, bool calc_depth, bool standardize_depth, bool weigh_by_kurt, double prob_pick_by_gain_pl, double prob_pick_by_gain_avg, double prob_pick_by_full_gain, double prob_pick_by_dens, double prob_pick_col_by_range, double prob_pick_col_by_var, double prob_pick_col_by_kurt, double min_gain, Rcpp::CharacterVector cat_split_type, Rcpp::CharacterVector new_cat_action, Rcpp::CharacterVector missing_action, bool all_perm, bool build_imputer, bool output_imputations, size_t min_imp_obs, Rcpp::CharacterVector depth_imp, Rcpp::CharacterVector weigh_imp_rows, int random_seed, bool use_long_double, int nthreads);
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RcppExport SEXP _isotree_fit_model(SEXP X_numSEXP, SEXP X_catSEXP, SEXP ncatSEXP, SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP sample_weightsSEXP, SEXP col_weightsSEXP, SEXP nrowsSEXP, SEXP ncols_numericSEXP, SEXP ncols_categSEXP, SEXP ndimSEXP, SEXP ntrySEXP, SEXP coef_typeSEXP, SEXP coef_by_propSEXP, SEXP with_replacementSEXP, SEXP weight_as_sampleSEXP, SEXP sample_sizeSEXP, SEXP ntreesSEXP, SEXP max_depthSEXP, SEXP ncols_per_treeSEXP, SEXP limit_depthSEXP, SEXP penalize_rangeSEXP, SEXP standardize_dataSEXP, SEXP scoring_metricSEXP, SEXP fast_bratioSEXP, SEXP calc_distSEXP, SEXP standardize_distSEXP, SEXP sq_distSEXP, SEXP calc_depthSEXP, SEXP standardize_depthSEXP, SEXP weigh_by_kurtSEXP, SEXP prob_pick_by_gain_plSEXP, SEXP prob_pick_by_gain_avgSEXP, SEXP prob_pick_by_full_gainSEXP, SEXP prob_pick_by_densSEXP, SEXP prob_pick_col_by_rangeSEXP, SEXP prob_pick_col_by_varSEXP, SEXP prob_pick_col_by_kurtSEXP, SEXP min_gainSEXP, SEXP cat_split_typeSEXP, SEXP new_cat_actionSEXP, SEXP missing_actionSEXP, SEXP all_permSEXP, SEXP build_imputerSEXP, SEXP output_imputationsSEXP, SEXP min_imp_obsSEXP, SEXP depth_impSEXP, SEXP weigh_imp_rowsSEXP, SEXP random_seedSEXP, SEXP use_long_doubleSEXP, SEXP nthreadsSEXP) {
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BEGIN_RCPP
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Rcpp::RObject rcpp_result_gen;
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Rcpp::RNGScope rcpp_rngScope_gen;
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Rcpp::traits::input_parameter< Rcpp::NumericVector >::type X_num(X_numSEXP);
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Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type X_cat(X_catSEXP);
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Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type ncat(ncatSEXP);
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@@ -75,18 +85,25 @@ BEGIN_RCPP
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Rcpp::traits::input_parameter< size_t >::type sample_size(sample_sizeSEXP);
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Rcpp::traits::input_parameter< size_t >::type ntrees(ntreesSEXP);
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Rcpp::traits::input_parameter< size_t >::type max_depth(max_depthSEXP);
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Rcpp::traits::input_parameter< size_t >::type ncols_per_tree(ncols_per_treeSEXP);
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Rcpp::traits::input_parameter< bool >::type limit_depth(limit_depthSEXP);
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Rcpp::traits::input_parameter< bool >::type penalize_range(penalize_rangeSEXP);
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Rcpp::traits::input_parameter< bool >::type standardize_data(standardize_dataSEXP);
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Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type scoring_metric(scoring_metricSEXP);
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Rcpp::traits::input_parameter< bool >::type fast_bratio(fast_bratioSEXP);
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Rcpp::traits::input_parameter< bool >::type calc_dist(calc_distSEXP);
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Rcpp::traits::input_parameter< bool >::type standardize_dist(standardize_distSEXP);
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Rcpp::traits::input_parameter< bool >::type sq_dist(sq_distSEXP);
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Rcpp::traits::input_parameter< bool >::type calc_depth(calc_depthSEXP);
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Rcpp::traits::input_parameter< bool >::type standardize_depth(standardize_depthSEXP);
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Rcpp::traits::input_parameter< bool >::type weigh_by_kurt(weigh_by_kurtSEXP);
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Rcpp::traits::input_parameter< double >::type prob_pick_by_gain_avg(prob_pick_by_gain_avgSEXP);
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Rcpp::traits::input_parameter< double >::type prob_split_by_gain_avg(prob_split_by_gain_avgSEXP);
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Rcpp::traits::input_parameter< double >::type prob_pick_by_gain_pl(prob_pick_by_gain_plSEXP);
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Rcpp::traits::input_parameter< double >::type
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Rcpp::traits::input_parameter< double >::type prob_pick_by_gain_avg(prob_pick_by_gain_avgSEXP);
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Rcpp::traits::input_parameter< double >::type prob_pick_by_full_gain(prob_pick_by_full_gainSEXP);
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Rcpp::traits::input_parameter< double >::type prob_pick_by_dens(prob_pick_by_densSEXP);
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Rcpp::traits::input_parameter< double >::type prob_pick_col_by_range(prob_pick_col_by_rangeSEXP);
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Rcpp::traits::input_parameter< double >::type prob_pick_col_by_var(prob_pick_col_by_varSEXP);
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Rcpp::traits::input_parameter< double >::type prob_pick_col_by_kurt(prob_pick_col_by_kurtSEXP);
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Rcpp::traits::input_parameter< double >::type min_gain(min_gainSEXP);
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Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type cat_split_type(cat_split_typeSEXP);
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Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type new_cat_action(new_cat_actionSEXP);
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Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type depth_imp(depth_impSEXP);
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Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type weigh_imp_rows(weigh_imp_rowsSEXP);
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Rcpp::traits::input_parameter< int >::type random_seed(random_seedSEXP);
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Rcpp::traits::input_parameter< bool >::type
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Rcpp::traits::input_parameter< bool >::type use_long_double(use_long_doubleSEXP);
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Rcpp::traits::input_parameter< int >::type nthreads(nthreadsSEXP);
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rcpp_result_gen = Rcpp::wrap(fit_model(X_num, X_cat, ncat, Xc, Xc_ind, Xc_indptr, sample_weights, col_weights, nrows, ncols_numeric, ncols_categ, ndim, ntry, coef_type, coef_by_prop, with_replacement, weight_as_sample, sample_size, ntrees, max_depth, limit_depth, penalize_range, calc_dist, standardize_dist, sq_dist, calc_depth, standardize_depth, weigh_by_kurt, prob_pick_by_gain_avg,
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rcpp_result_gen = Rcpp::wrap(fit_model(X_num, X_cat, ncat, Xc, Xc_ind, Xc_indptr, sample_weights, col_weights, nrows, ncols_numeric, ncols_categ, ndim, ntry, coef_type, coef_by_prop, with_replacement, weight_as_sample, sample_size, ntrees, max_depth, ncols_per_tree, limit_depth, penalize_range, standardize_data, scoring_metric, fast_bratio, calc_dist, standardize_dist, sq_dist, calc_depth, standardize_depth, weigh_by_kurt, prob_pick_by_gain_pl, prob_pick_by_gain_avg, prob_pick_by_full_gain, prob_pick_by_dens, prob_pick_col_by_range, prob_pick_col_by_var, prob_pick_col_by_kurt, min_gain, cat_split_type, new_cat_action, missing_action, all_perm, build_imputer, output_imputations, min_imp_obs, depth_imp, weigh_imp_rows, random_seed, use_long_double, nthreads));
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return rcpp_result_gen;
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END_RCPP
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}
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// fit_tree
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RcppExport SEXP _isotree_fit_tree(SEXP model_R_ptrSEXP, SEXP X_numSEXP, SEXP X_catSEXP, SEXP ncatSEXP, SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP sample_weightsSEXP, SEXP col_weightsSEXP, SEXP nrowsSEXP, SEXP ncols_numericSEXP, SEXP ncols_categSEXP, SEXP ndimSEXP, SEXP ntrySEXP, SEXP coef_typeSEXP, SEXP coef_by_propSEXP, SEXP max_depthSEXP, SEXP limit_depthSEXP, SEXP penalize_rangeSEXP, SEXP weigh_by_kurtSEXP, SEXP prob_pick_by_gain_avgSEXP, SEXP
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void fit_tree(SEXP model_R_ptr, Rcpp::RawVector serialized_obj, Rcpp::RawVector serialized_imputer, SEXP indexer_R_ptr, Rcpp::RawVector serialized_indexer, Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::IntegerVector ncat, Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr, Rcpp::NumericVector sample_weights, Rcpp::NumericVector col_weights, size_t nrows, size_t ncols_numeric, size_t ncols_categ, size_t ndim, size_t ntry, Rcpp::CharacterVector coef_type, bool coef_by_prop, size_t max_depth, size_t ncols_per_tree, bool limit_depth, bool penalize_range, bool standardize_data, bool fast_bratio, bool weigh_by_kurt, double prob_pick_by_gain_pl, double prob_pick_by_gain_avg, double prob_pick_by_full_gain, double prob_pick_by_dens, double prob_pick_col_by_range, double prob_pick_col_by_var, double prob_pick_col_by_kurt, double min_gain, Rcpp::CharacterVector cat_split_type, Rcpp::CharacterVector new_cat_action, Rcpp::CharacterVector missing_action, bool build_imputer, size_t min_imp_obs, SEXP imp_R_ptr, Rcpp::CharacterVector depth_imp, Rcpp::CharacterVector weigh_imp_rows, bool all_perm, Rcpp::NumericVector ref_X_num, Rcpp::IntegerVector ref_X_cat, Rcpp::NumericVector ref_Xc, Rcpp::IntegerVector ref_Xc_ind, Rcpp::IntegerVector ref_Xc_indptr, uint64_t random_seed, bool use_long_double, Rcpp::List& model_cpp_obj_update, Rcpp::List& model_params_update);
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RcppExport SEXP _isotree_fit_tree(SEXP model_R_ptrSEXP, SEXP serialized_objSEXP, SEXP serialized_imputerSEXP, SEXP indexer_R_ptrSEXP, SEXP serialized_indexerSEXP, SEXP X_numSEXP, SEXP X_catSEXP, SEXP ncatSEXP, SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP sample_weightsSEXP, SEXP col_weightsSEXP, SEXP nrowsSEXP, SEXP ncols_numericSEXP, SEXP ncols_categSEXP, SEXP ndimSEXP, SEXP ntrySEXP, SEXP coef_typeSEXP, SEXP coef_by_propSEXP, SEXP max_depthSEXP, SEXP ncols_per_treeSEXP, SEXP limit_depthSEXP, SEXP penalize_rangeSEXP, SEXP standardize_dataSEXP, SEXP fast_bratioSEXP, SEXP weigh_by_kurtSEXP, SEXP prob_pick_by_gain_plSEXP, SEXP prob_pick_by_gain_avgSEXP, SEXP prob_pick_by_full_gainSEXP, SEXP prob_pick_by_densSEXP, SEXP prob_pick_col_by_rangeSEXP, SEXP prob_pick_col_by_varSEXP, SEXP prob_pick_col_by_kurtSEXP, SEXP min_gainSEXP, SEXP cat_split_typeSEXP, SEXP new_cat_actionSEXP, SEXP missing_actionSEXP, SEXP build_imputerSEXP, SEXP min_imp_obsSEXP, SEXP imp_R_ptrSEXP, SEXP depth_impSEXP, SEXP weigh_imp_rowsSEXP, SEXP all_permSEXP, SEXP ref_X_numSEXP, SEXP ref_X_catSEXP, SEXP ref_XcSEXP, SEXP ref_Xc_indSEXP, SEXP ref_Xc_indptrSEXP, SEXP random_seedSEXP, SEXP use_long_doubleSEXP, SEXP model_cpp_obj_updateSEXP, SEXP model_params_updateSEXP) {
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BEGIN_RCPP
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Rcpp::RObject rcpp_result_gen;
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Rcpp::RNGScope rcpp_rngScope_gen;
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Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
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Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_obj(serialized_objSEXP);
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Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_imputer(serialized_imputerSEXP);
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Rcpp::traits::input_parameter< SEXP >::type indexer_R_ptr(indexer_R_ptrSEXP);
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Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_indexer(serialized_indexerSEXP);
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Rcpp::traits::input_parameter< Rcpp::NumericVector >::type X_num(X_numSEXP);
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Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type X_cat(X_catSEXP);
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Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type ncat(ncatSEXP);
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@@ -127,13 +146,19 @@ BEGIN_RCPP
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Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type coef_type(coef_typeSEXP);
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Rcpp::traits::input_parameter< bool >::type coef_by_prop(coef_by_propSEXP);
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Rcpp::traits::input_parameter< size_t >::type max_depth(max_depthSEXP);
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Rcpp::traits::input_parameter< size_t >::type ncols_per_tree(ncols_per_treeSEXP);
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Rcpp::traits::input_parameter< bool >::type limit_depth(limit_depthSEXP);
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Rcpp::traits::input_parameter< bool >::type penalize_range(penalize_rangeSEXP);
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Rcpp::traits::input_parameter< bool >::type standardize_data(standardize_dataSEXP);
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Rcpp::traits::input_parameter< bool >::type fast_bratio(fast_bratioSEXP);
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Rcpp::traits::input_parameter< bool >::type weigh_by_kurt(weigh_by_kurtSEXP);
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Rcpp::traits::input_parameter< double >::type prob_pick_by_gain_avg(prob_pick_by_gain_avgSEXP);
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Rcpp::traits::input_parameter< double >::type prob_split_by_gain_avg(prob_split_by_gain_avgSEXP);
|
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Rcpp::traits::input_parameter< double >::type prob_pick_by_gain_pl(prob_pick_by_gain_plSEXP);
|
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Rcpp::traits::input_parameter< double >::type
|
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Rcpp::traits::input_parameter< double >::type prob_pick_by_gain_avg(prob_pick_by_gain_avgSEXP);
|
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Rcpp::traits::input_parameter< double >::type prob_pick_by_full_gain(prob_pick_by_full_gainSEXP);
|
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Rcpp::traits::input_parameter< double >::type prob_pick_by_dens(prob_pick_by_densSEXP);
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Rcpp::traits::input_parameter< double >::type prob_pick_col_by_range(prob_pick_col_by_rangeSEXP);
|
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Rcpp::traits::input_parameter< double >::type prob_pick_col_by_var(prob_pick_col_by_varSEXP);
|
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Rcpp::traits::input_parameter< double >::type prob_pick_col_by_kurt(prob_pick_col_by_kurtSEXP);
|
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Rcpp::traits::input_parameter< double >::type min_gain(min_gainSEXP);
|
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Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type cat_split_type(cat_split_typeSEXP);
|
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|
Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type new_cat_action(new_cat_actionSEXP);
|
@@ -144,20 +169,29 @@ BEGIN_RCPP
|
|
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Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type depth_imp(depth_impSEXP);
|
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|
Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type weigh_imp_rows(weigh_imp_rowsSEXP);
|
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|
Rcpp::traits::input_parameter< bool >::type all_perm(all_permSEXP);
|
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Rcpp::traits::input_parameter< Rcpp::NumericVector >::type ref_X_num(ref_X_numSEXP);
|
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Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type ref_X_cat(ref_X_catSEXP);
|
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Rcpp::traits::input_parameter< Rcpp::NumericVector >::type ref_Xc(ref_XcSEXP);
|
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Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type ref_Xc_ind(ref_Xc_indSEXP);
|
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Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type ref_Xc_indptr(ref_Xc_indptrSEXP);
|
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|
Rcpp::traits::input_parameter< uint64_t >::type random_seed(random_seedSEXP);
|
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|
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|
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|
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|
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|
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Rcpp::traits::input_parameter< bool >::type use_long_double(use_long_doubleSEXP);
|
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Rcpp::traits::input_parameter< Rcpp::List& >::type model_cpp_obj_update(model_cpp_obj_updateSEXP);
|
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|
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Rcpp::traits::input_parameter< Rcpp::List& >::type model_params_update(model_params_updateSEXP);
|
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|
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fit_tree(model_R_ptr, serialized_obj, serialized_imputer, indexer_R_ptr, serialized_indexer, X_num, X_cat, ncat, Xc, Xc_ind, Xc_indptr, sample_weights, col_weights, nrows, ncols_numeric, ncols_categ, ndim, ntry, coef_type, coef_by_prop, max_depth, ncols_per_tree, limit_depth, penalize_range, standardize_data, fast_bratio, weigh_by_kurt, prob_pick_by_gain_pl, prob_pick_by_gain_avg, prob_pick_by_full_gain, prob_pick_by_dens, prob_pick_col_by_range, prob_pick_col_by_var, prob_pick_col_by_kurt, min_gain, cat_split_type, new_cat_action, missing_action, build_imputer, min_imp_obs, imp_R_ptr, depth_imp, weigh_imp_rows, all_perm, ref_X_num, ref_X_cat, ref_Xc, ref_Xc_ind, ref_Xc_indptr, random_seed, use_long_double, model_cpp_obj_update, model_params_update);
|
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|
+
return R_NilValue;
|
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|
END_RCPP
|
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|
}
|
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|
// predict_iso
|
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|
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void predict_iso(SEXP model_R_ptr, Rcpp::NumericVector outp, Rcpp::
|
154
|
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RcppExport SEXP _isotree_predict_iso(SEXP model_R_ptrSEXP, SEXP outpSEXP, SEXP tree_numSEXP, SEXP
|
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|
+
void predict_iso(SEXP model_R_ptr, bool is_extended, SEXP indexer_R_ptr, Rcpp::NumericVector outp, Rcpp::IntegerMatrix tree_num, Rcpp::NumericMatrix tree_depths, Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr, Rcpp::NumericVector Xr, Rcpp::IntegerVector Xr_ind, Rcpp::IntegerVector Xr_indptr, size_t nrows, int nthreads, bool standardize);
|
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|
+
RcppExport SEXP _isotree_predict_iso(SEXP model_R_ptrSEXP, SEXP is_extendedSEXP, SEXP indexer_R_ptrSEXP, SEXP outpSEXP, SEXP tree_numSEXP, SEXP tree_depthsSEXP, SEXP X_numSEXP, SEXP X_catSEXP, SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP XrSEXP, SEXP Xr_indSEXP, SEXP Xr_indptrSEXP, SEXP nrowsSEXP, SEXP nthreadsSEXP, SEXP standardizeSEXP) {
|
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|
BEGIN_RCPP
|
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|
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Rcpp::RNGScope rcpp_rngScope_gen;
|
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|
Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
|
158
|
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Rcpp::traits::input_parameter< Rcpp::NumericVector >::type outp(outpSEXP);
|
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|
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Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type tree_num(tree_numSEXP);
|
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|
Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
|
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|
+
Rcpp::traits::input_parameter< SEXP >::type indexer_R_ptr(indexer_R_ptrSEXP);
|
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|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type outp(outpSEXP);
|
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|
+
Rcpp::traits::input_parameter< Rcpp::IntegerMatrix >::type tree_num(tree_numSEXP);
|
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|
+
Rcpp::traits::input_parameter< Rcpp::NumericMatrix >::type tree_depths(tree_depthsSEXP);
|
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|
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type X_num(X_numSEXP);
|
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|
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type X_cat(X_catSEXP);
|
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|
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type Xc(XcSEXP);
|
@@ -169,19 +203,19 @@ BEGIN_RCPP
|
|
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|
Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
|
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|
Rcpp::traits::input_parameter< int >::type nthreads(nthreadsSEXP);
|
171
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|
Rcpp::traits::input_parameter< bool >::type standardize(standardizeSEXP);
|
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|
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predict_iso(model_R_ptr, outp, tree_num,
|
206
|
+
predict_iso(model_R_ptr, is_extended, indexer_R_ptr, outp, tree_num, tree_depths, X_num, X_cat, Xc, Xc_ind, Xc_indptr, Xr, Xr_ind, Xr_indptr, nrows, nthreads, standardize);
|
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|
return R_NilValue;
|
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|
END_RCPP
|
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|
}
|
176
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|
// dist_iso
|
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|
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void dist_iso(SEXP model_R_ptr, Rcpp::NumericVector tmat, Rcpp::
|
178
|
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RcppExport SEXP _isotree_dist_iso(SEXP model_R_ptrSEXP, SEXP tmatSEXP, SEXP dmatSEXP, SEXP rmatSEXP, SEXP is_extendedSEXP, SEXP X_numSEXP, SEXP X_catSEXP, SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP nrowsSEXP, SEXP nthreadsSEXP, SEXP assume_full_distrSEXP, SEXP standardize_distSEXP, SEXP sq_distSEXP, SEXP n_fromSEXP) {
|
211
|
+
void dist_iso(SEXP model_R_ptr, SEXP indexer_R_ptr, Rcpp::NumericVector tmat, Rcpp::NumericMatrix dmat, Rcpp::NumericMatrix rmat, bool is_extended, Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr, size_t nrows, bool use_long_double, int nthreads, bool assume_full_distr, bool standardize_dist, bool sq_dist, size_t n_from, bool use_reference_points, bool as_kernel);
|
212
|
+
RcppExport SEXP _isotree_dist_iso(SEXP model_R_ptrSEXP, SEXP indexer_R_ptrSEXP, SEXP tmatSEXP, SEXP dmatSEXP, SEXP rmatSEXP, SEXP is_extendedSEXP, SEXP X_numSEXP, SEXP X_catSEXP, SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP nrowsSEXP, SEXP use_long_doubleSEXP, SEXP nthreadsSEXP, SEXP assume_full_distrSEXP, SEXP standardize_distSEXP, SEXP sq_distSEXP, SEXP n_fromSEXP, SEXP use_reference_pointsSEXP, SEXP as_kernelSEXP) {
|
179
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|
BEGIN_RCPP
|
180
|
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Rcpp::RNGScope rcpp_rngScope_gen;
|
181
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|
Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
|
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|
+
Rcpp::traits::input_parameter< SEXP >::type indexer_R_ptr(indexer_R_ptrSEXP);
|
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216
|
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type tmat(tmatSEXP);
|
183
|
-
Rcpp::traits::input_parameter< Rcpp::
|
184
|
-
Rcpp::traits::input_parameter< Rcpp::
|
217
|
+
Rcpp::traits::input_parameter< Rcpp::NumericMatrix >::type dmat(dmatSEXP);
|
218
|
+
Rcpp::traits::input_parameter< Rcpp::NumericMatrix >::type rmat(rmatSEXP);
|
185
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|
Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
|
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|
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type X_num(X_numSEXP);
|
187
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|
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type X_cat(X_catSEXP);
|
@@ -189,21 +223,23 @@ BEGIN_RCPP
|
|
189
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|
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_ind(Xc_indSEXP);
|
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Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_indptr(Xc_indptrSEXP);
|
191
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|
Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
|
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|
+
Rcpp::traits::input_parameter< bool >::type use_long_double(use_long_doubleSEXP);
|
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|
Rcpp::traits::input_parameter< int >::type nthreads(nthreadsSEXP);
|
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|
Rcpp::traits::input_parameter< bool >::type assume_full_distr(assume_full_distrSEXP);
|
194
229
|
Rcpp::traits::input_parameter< bool >::type standardize_dist(standardize_distSEXP);
|
195
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|
Rcpp::traits::input_parameter< bool >::type sq_dist(sq_distSEXP);
|
196
231
|
Rcpp::traits::input_parameter< size_t >::type n_from(n_fromSEXP);
|
197
|
-
|
232
|
+
Rcpp::traits::input_parameter< bool >::type use_reference_points(use_reference_pointsSEXP);
|
233
|
+
Rcpp::traits::input_parameter< bool >::type as_kernel(as_kernelSEXP);
|
234
|
+
dist_iso(model_R_ptr, indexer_R_ptr, tmat, dmat, rmat, is_extended, X_num, X_cat, Xc, Xc_ind, Xc_indptr, nrows, use_long_double, nthreads, assume_full_distr, standardize_dist, sq_dist, n_from, use_reference_points, as_kernel);
|
198
235
|
return R_NilValue;
|
199
236
|
END_RCPP
|
200
237
|
}
|
201
238
|
// impute_iso
|
202
|
-
Rcpp::List impute_iso(SEXP model_R_ptr, SEXP imputer_R_ptr, bool is_extended, Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::NumericVector Xr, Rcpp::IntegerVector Xr_ind, Rcpp::IntegerVector Xr_indptr, size_t nrows, int nthreads);
|
203
|
-
RcppExport SEXP _isotree_impute_iso(SEXP model_R_ptrSEXP, SEXP imputer_R_ptrSEXP, SEXP is_extendedSEXP, SEXP X_numSEXP, SEXP X_catSEXP, SEXP XrSEXP, SEXP Xr_indSEXP, SEXP Xr_indptrSEXP, SEXP nrowsSEXP, SEXP nthreadsSEXP) {
|
239
|
+
Rcpp::List impute_iso(SEXP model_R_ptr, SEXP imputer_R_ptr, bool is_extended, Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::NumericVector Xr, Rcpp::IntegerVector Xr_ind, Rcpp::IntegerVector Xr_indptr, size_t nrows, bool use_long_double, int nthreads);
|
240
|
+
RcppExport SEXP _isotree_impute_iso(SEXP model_R_ptrSEXP, SEXP imputer_R_ptrSEXP, SEXP is_extendedSEXP, SEXP X_numSEXP, SEXP X_catSEXP, SEXP XrSEXP, SEXP Xr_indSEXP, SEXP Xr_indptrSEXP, SEXP nrowsSEXP, SEXP use_long_doubleSEXP, SEXP nthreadsSEXP) {
|
204
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|
BEGIN_RCPP
|
205
242
|
Rcpp::RObject rcpp_result_gen;
|
206
|
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Rcpp::RNGScope rcpp_rngScope_gen;
|
207
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|
Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
|
208
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|
Rcpp::traits::input_parameter< SEXP >::type imputer_R_ptr(imputer_R_ptrSEXP);
|
209
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|
Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
|
@@ -213,17 +249,71 @@ BEGIN_RCPP
|
|
213
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|
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xr_ind(Xr_indSEXP);
|
214
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|
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xr_indptr(Xr_indptrSEXP);
|
215
251
|
Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
|
252
|
+
Rcpp::traits::input_parameter< bool >::type use_long_double(use_long_doubleSEXP);
|
216
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|
Rcpp::traits::input_parameter< int >::type nthreads(nthreadsSEXP);
|
217
|
-
rcpp_result_gen = Rcpp::wrap(impute_iso(model_R_ptr, imputer_R_ptr, is_extended, X_num, X_cat, Xr, Xr_ind, Xr_indptr, nrows, nthreads));
|
254
|
+
rcpp_result_gen = Rcpp::wrap(impute_iso(model_R_ptr, imputer_R_ptr, is_extended, X_num, X_cat, Xr, Xr_ind, Xr_indptr, nrows, use_long_double, nthreads));
|
255
|
+
return rcpp_result_gen;
|
256
|
+
END_RCPP
|
257
|
+
}
|
258
|
+
// drop_imputer
|
259
|
+
void drop_imputer(Rcpp::List lst_modify, Rcpp::List lst_modify2);
|
260
|
+
RcppExport SEXP _isotree_drop_imputer(SEXP lst_modifySEXP, SEXP lst_modify2SEXP) {
|
261
|
+
BEGIN_RCPP
|
262
|
+
Rcpp::traits::input_parameter< Rcpp::List >::type lst_modify(lst_modifySEXP);
|
263
|
+
Rcpp::traits::input_parameter< Rcpp::List >::type lst_modify2(lst_modify2SEXP);
|
264
|
+
drop_imputer(lst_modify, lst_modify2);
|
265
|
+
return R_NilValue;
|
266
|
+
END_RCPP
|
267
|
+
}
|
268
|
+
// drop_indexer
|
269
|
+
void drop_indexer(Rcpp::List lst_modify, Rcpp::List lst_modify2);
|
270
|
+
RcppExport SEXP _isotree_drop_indexer(SEXP lst_modifySEXP, SEXP lst_modify2SEXP) {
|
271
|
+
BEGIN_RCPP
|
272
|
+
Rcpp::traits::input_parameter< Rcpp::List >::type lst_modify(lst_modifySEXP);
|
273
|
+
Rcpp::traits::input_parameter< Rcpp::List >::type lst_modify2(lst_modify2SEXP);
|
274
|
+
drop_indexer(lst_modify, lst_modify2);
|
275
|
+
return R_NilValue;
|
276
|
+
END_RCPP
|
277
|
+
}
|
278
|
+
// drop_reference_points
|
279
|
+
void drop_reference_points(Rcpp::List lst_modify, Rcpp::List lst_modify2);
|
280
|
+
RcppExport SEXP _isotree_drop_reference_points(SEXP lst_modifySEXP, SEXP lst_modify2SEXP) {
|
281
|
+
BEGIN_RCPP
|
282
|
+
Rcpp::traits::input_parameter< Rcpp::List >::type lst_modify(lst_modifySEXP);
|
283
|
+
Rcpp::traits::input_parameter< Rcpp::List >::type lst_modify2(lst_modify2SEXP);
|
284
|
+
drop_reference_points(lst_modify, lst_modify2);
|
285
|
+
return R_NilValue;
|
286
|
+
END_RCPP
|
287
|
+
}
|
288
|
+
// subset_trees
|
289
|
+
Rcpp::List subset_trees(SEXP model_R_ptr, SEXP imputer_R_ptr, SEXP indexer_R_ptr, bool is_extended, bool has_imputer, Rcpp::IntegerVector trees_take);
|
290
|
+
RcppExport SEXP _isotree_subset_trees(SEXP model_R_ptrSEXP, SEXP imputer_R_ptrSEXP, SEXP indexer_R_ptrSEXP, SEXP is_extendedSEXP, SEXP has_imputerSEXP, SEXP trees_takeSEXP) {
|
291
|
+
BEGIN_RCPP
|
292
|
+
Rcpp::RObject rcpp_result_gen;
|
293
|
+
Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
|
294
|
+
Rcpp::traits::input_parameter< SEXP >::type imputer_R_ptr(imputer_R_ptrSEXP);
|
295
|
+
Rcpp::traits::input_parameter< SEXP >::type indexer_R_ptr(indexer_R_ptrSEXP);
|
296
|
+
Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
|
297
|
+
Rcpp::traits::input_parameter< bool >::type has_imputer(has_imputerSEXP);
|
298
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type trees_take(trees_takeSEXP);
|
299
|
+
rcpp_result_gen = Rcpp::wrap(subset_trees(model_R_ptr, imputer_R_ptr, indexer_R_ptr, is_extended, has_imputer, trees_take));
|
218
300
|
return rcpp_result_gen;
|
219
301
|
END_RCPP
|
220
302
|
}
|
303
|
+
// inplace_set_to_zero
|
304
|
+
void inplace_set_to_zero(SEXP obj);
|
305
|
+
RcppExport SEXP _isotree_inplace_set_to_zero(SEXP objSEXP) {
|
306
|
+
BEGIN_RCPP
|
307
|
+
Rcpp::traits::input_parameter< SEXP >::type obj(objSEXP);
|
308
|
+
inplace_set_to_zero(obj);
|
309
|
+
return R_NilValue;
|
310
|
+
END_RCPP
|
311
|
+
}
|
221
312
|
// get_n_nodes
|
222
313
|
Rcpp::List get_n_nodes(SEXP model_R_ptr, bool is_extended, int nthreads);
|
223
314
|
RcppExport SEXP _isotree_get_n_nodes(SEXP model_R_ptrSEXP, SEXP is_extendedSEXP, SEXP nthreadsSEXP) {
|
224
315
|
BEGIN_RCPP
|
225
316
|
Rcpp::RObject rcpp_result_gen;
|
226
|
-
Rcpp::RNGScope rcpp_rngScope_gen;
|
227
317
|
Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
|
228
318
|
Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
|
229
319
|
Rcpp::traits::input_parameter< int >::type nthreads(nthreadsSEXP);
|
@@ -232,18 +322,23 @@ BEGIN_RCPP
|
|
232
322
|
END_RCPP
|
233
323
|
}
|
234
324
|
// append_trees_from_other
|
235
|
-
|
236
|
-
RcppExport SEXP _isotree_append_trees_from_other(SEXP model_R_ptrSEXP, SEXP other_R_ptrSEXP, SEXP imp_R_ptrSEXP, SEXP oimp_R_ptrSEXP, SEXP is_extendedSEXP) {
|
325
|
+
void append_trees_from_other(SEXP model_R_ptr, SEXP other_R_ptr, SEXP imp_R_ptr, SEXP oimp_R_ptr, SEXP ind_R_ptr, SEXP oind_R_ptr, bool is_extended, Rcpp::RawVector serialized_obj, Rcpp::RawVector serialized_imputer, Rcpp::RawVector serialized_indexer, Rcpp::List& model_cpp_obj_update, Rcpp::List& model_params_update);
|
326
|
+
RcppExport SEXP _isotree_append_trees_from_other(SEXP model_R_ptrSEXP, SEXP other_R_ptrSEXP, SEXP imp_R_ptrSEXP, SEXP oimp_R_ptrSEXP, SEXP ind_R_ptrSEXP, SEXP oind_R_ptrSEXP, SEXP is_extendedSEXP, SEXP serialized_objSEXP, SEXP serialized_imputerSEXP, SEXP serialized_indexerSEXP, SEXP model_cpp_obj_updateSEXP, SEXP model_params_updateSEXP) {
|
237
327
|
BEGIN_RCPP
|
238
|
-
Rcpp::RObject rcpp_result_gen;
|
239
|
-
Rcpp::RNGScope rcpp_rngScope_gen;
|
240
328
|
Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
|
241
329
|
Rcpp::traits::input_parameter< SEXP >::type other_R_ptr(other_R_ptrSEXP);
|
242
330
|
Rcpp::traits::input_parameter< SEXP >::type imp_R_ptr(imp_R_ptrSEXP);
|
243
331
|
Rcpp::traits::input_parameter< SEXP >::type oimp_R_ptr(oimp_R_ptrSEXP);
|
332
|
+
Rcpp::traits::input_parameter< SEXP >::type ind_R_ptr(ind_R_ptrSEXP);
|
333
|
+
Rcpp::traits::input_parameter< SEXP >::type oind_R_ptr(oind_R_ptrSEXP);
|
244
334
|
Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
|
245
|
-
|
246
|
-
|
335
|
+
Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_obj(serialized_objSEXP);
|
336
|
+
Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_imputer(serialized_imputerSEXP);
|
337
|
+
Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_indexer(serialized_indexerSEXP);
|
338
|
+
Rcpp::traits::input_parameter< Rcpp::List& >::type model_cpp_obj_update(model_cpp_obj_updateSEXP);
|
339
|
+
Rcpp::traits::input_parameter< Rcpp::List& >::type model_params_update(model_params_updateSEXP);
|
340
|
+
append_trees_from_other(model_R_ptr, other_R_ptr, imp_R_ptr, oimp_R_ptr, ind_R_ptr, oind_R_ptr, is_extended, serialized_obj, serialized_imputer, serialized_indexer, model_cpp_obj_update, model_params_update);
|
341
|
+
return R_NilValue;
|
247
342
|
END_RCPP
|
248
343
|
}
|
249
344
|
// model_to_sql
|
@@ -251,7 +346,6 @@ Rcpp::ListOf<Rcpp::CharacterVector> model_to_sql(SEXP model_R_ptr, bool is_exten
|
|
251
346
|
RcppExport SEXP _isotree_model_to_sql(SEXP model_R_ptrSEXP, SEXP is_extendedSEXP, SEXP numeric_colanmesSEXP, SEXP categ_colnamesSEXP, SEXP categ_levelsSEXP, SEXP output_tree_numSEXP, SEXP single_treeSEXP, SEXP tree_numSEXP, SEXP nthreadsSEXP) {
|
252
347
|
BEGIN_RCPP
|
253
348
|
Rcpp::RObject rcpp_result_gen;
|
254
|
-
Rcpp::RNGScope rcpp_rngScope_gen;
|
255
349
|
Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
|
256
350
|
Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
|
257
351
|
Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type numeric_colanmes(numeric_colanmesSEXP);
|
@@ -270,7 +364,6 @@ Rcpp::CharacterVector model_to_sql_with_select_from(SEXP model_R_ptr, bool is_ex
|
|
270
364
|
RcppExport SEXP _isotree_model_to_sql_with_select_from(SEXP model_R_ptrSEXP, SEXP is_extendedSEXP, SEXP numeric_colanmesSEXP, SEXP categ_colnamesSEXP, SEXP categ_levelsSEXP, SEXP table_fromSEXP, SEXP select_asSEXP, SEXP nthreadsSEXP) {
|
271
365
|
BEGIN_RCPP
|
272
366
|
Rcpp::RObject rcpp_result_gen;
|
273
|
-
Rcpp::RNGScope rcpp_rngScope_gen;
|
274
367
|
Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
|
275
368
|
Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
|
276
369
|
Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type numeric_colanmes(numeric_colanmesSEXP);
|
@@ -283,21 +376,401 @@ BEGIN_RCPP
|
|
283
376
|
return rcpp_result_gen;
|
284
377
|
END_RCPP
|
285
378
|
}
|
379
|
+
// copy_cpp_objects
|
380
|
+
Rcpp::List copy_cpp_objects(SEXP model_R_ptr, bool is_extended, SEXP imp_R_ptr, bool has_imputer, SEXP ind_R_ptr);
|
381
|
+
RcppExport SEXP _isotree_copy_cpp_objects(SEXP model_R_ptrSEXP, SEXP is_extendedSEXP, SEXP imp_R_ptrSEXP, SEXP has_imputerSEXP, SEXP ind_R_ptrSEXP) {
|
382
|
+
BEGIN_RCPP
|
383
|
+
Rcpp::RObject rcpp_result_gen;
|
384
|
+
Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
|
385
|
+
Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
|
386
|
+
Rcpp::traits::input_parameter< SEXP >::type imp_R_ptr(imp_R_ptrSEXP);
|
387
|
+
Rcpp::traits::input_parameter< bool >::type has_imputer(has_imputerSEXP);
|
388
|
+
Rcpp::traits::input_parameter< SEXP >::type ind_R_ptr(ind_R_ptrSEXP);
|
389
|
+
rcpp_result_gen = Rcpp::wrap(copy_cpp_objects(model_R_ptr, is_extended, imp_R_ptr, has_imputer, ind_R_ptr));
|
390
|
+
return rcpp_result_gen;
|
391
|
+
END_RCPP
|
392
|
+
}
|
393
|
+
// build_tree_indices
|
394
|
+
void build_tree_indices(Rcpp::List lst_modify, bool is_extended, bool with_distances, int nthreads);
|
395
|
+
RcppExport SEXP _isotree_build_tree_indices(SEXP lst_modifySEXP, SEXP is_extendedSEXP, SEXP with_distancesSEXP, SEXP nthreadsSEXP) {
|
396
|
+
BEGIN_RCPP
|
397
|
+
Rcpp::traits::input_parameter< Rcpp::List >::type lst_modify(lst_modifySEXP);
|
398
|
+
Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
|
399
|
+
Rcpp::traits::input_parameter< bool >::type with_distances(with_distancesSEXP);
|
400
|
+
Rcpp::traits::input_parameter< int >::type nthreads(nthreadsSEXP);
|
401
|
+
build_tree_indices(lst_modify, is_extended, with_distances, nthreads);
|
402
|
+
return R_NilValue;
|
403
|
+
END_RCPP
|
404
|
+
}
|
405
|
+
// check_node_indexer_has_distances
|
406
|
+
bool check_node_indexer_has_distances(SEXP indexer_R_ptr);
|
407
|
+
RcppExport SEXP _isotree_check_node_indexer_has_distances(SEXP indexer_R_ptrSEXP) {
|
408
|
+
BEGIN_RCPP
|
409
|
+
Rcpp::RObject rcpp_result_gen;
|
410
|
+
Rcpp::traits::input_parameter< SEXP >::type indexer_R_ptr(indexer_R_ptrSEXP);
|
411
|
+
rcpp_result_gen = Rcpp::wrap(check_node_indexer_has_distances(indexer_R_ptr));
|
412
|
+
return rcpp_result_gen;
|
413
|
+
END_RCPP
|
414
|
+
}
|
415
|
+
// set_reference_points
|
416
|
+
void set_reference_points(Rcpp::List lst_modify, Rcpp::List lst_modify2, SEXP rnames, bool is_extended, Rcpp::NumericVector X_num, Rcpp::IntegerVector X_cat, Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr, size_t nrows, int nthreads, bool with_distances);
|
417
|
+
RcppExport SEXP _isotree_set_reference_points(SEXP lst_modifySEXP, SEXP lst_modify2SEXP, SEXP rnamesSEXP, SEXP is_extendedSEXP, SEXP X_numSEXP, SEXP X_catSEXP, SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP nrowsSEXP, SEXP nthreadsSEXP, SEXP with_distancesSEXP) {
|
418
|
+
BEGIN_RCPP
|
419
|
+
Rcpp::traits::input_parameter< Rcpp::List >::type lst_modify(lst_modifySEXP);
|
420
|
+
Rcpp::traits::input_parameter< Rcpp::List >::type lst_modify2(lst_modify2SEXP);
|
421
|
+
Rcpp::traits::input_parameter< SEXP >::type rnames(rnamesSEXP);
|
422
|
+
Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
|
423
|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type X_num(X_numSEXP);
|
424
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type X_cat(X_catSEXP);
|
425
|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type Xc(XcSEXP);
|
426
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_ind(Xc_indSEXP);
|
427
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_indptr(Xc_indptrSEXP);
|
428
|
+
Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
|
429
|
+
Rcpp::traits::input_parameter< int >::type nthreads(nthreadsSEXP);
|
430
|
+
Rcpp::traits::input_parameter< bool >::type with_distances(with_distancesSEXP);
|
431
|
+
set_reference_points(lst_modify, lst_modify2, rnames, is_extended, X_num, X_cat, Xc, Xc_ind, Xc_indptr, nrows, nthreads, with_distances);
|
432
|
+
return R_NilValue;
|
433
|
+
END_RCPP
|
434
|
+
}
|
435
|
+
// check_node_indexer_has_references
|
436
|
+
bool check_node_indexer_has_references(SEXP indexer_R_ptr);
|
437
|
+
RcppExport SEXP _isotree_check_node_indexer_has_references(SEXP indexer_R_ptrSEXP) {
|
438
|
+
BEGIN_RCPP
|
439
|
+
Rcpp::RObject rcpp_result_gen;
|
440
|
+
Rcpp::traits::input_parameter< SEXP >::type indexer_R_ptr(indexer_R_ptrSEXP);
|
441
|
+
rcpp_result_gen = Rcpp::wrap(check_node_indexer_has_references(indexer_R_ptr));
|
442
|
+
return rcpp_result_gen;
|
443
|
+
END_RCPP
|
444
|
+
}
|
445
|
+
// get_num_references
|
446
|
+
int get_num_references(SEXP indexer_R_ptr);
|
447
|
+
RcppExport SEXP _isotree_get_num_references(SEXP indexer_R_ptrSEXP) {
|
448
|
+
BEGIN_RCPP
|
449
|
+
Rcpp::RObject rcpp_result_gen;
|
450
|
+
Rcpp::traits::input_parameter< SEXP >::type indexer_R_ptr(indexer_R_ptrSEXP);
|
451
|
+
rcpp_result_gen = Rcpp::wrap(get_num_references(indexer_R_ptr));
|
452
|
+
return rcpp_result_gen;
|
453
|
+
END_RCPP
|
454
|
+
}
|
455
|
+
// get_null_R_pointer
|
456
|
+
SEXP get_null_R_pointer();
|
457
|
+
RcppExport SEXP _isotree_get_null_R_pointer() {
|
458
|
+
BEGIN_RCPP
|
459
|
+
Rcpp::RObject rcpp_result_gen;
|
460
|
+
rcpp_result_gen = Rcpp::wrap(get_null_R_pointer());
|
461
|
+
return rcpp_result_gen;
|
462
|
+
END_RCPP
|
463
|
+
}
|
464
|
+
// serialize_to_file
|
465
|
+
void serialize_to_file(Rcpp::RawVector serialized_obj, Rcpp::RawVector serialized_imputer, Rcpp::RawVector serialized_indexer, bool is_extended, Rcpp::RawVector metadata, Rcpp::CharacterVector fname);
|
466
|
+
RcppExport SEXP _isotree_serialize_to_file(SEXP serialized_objSEXP, SEXP serialized_imputerSEXP, SEXP serialized_indexerSEXP, SEXP is_extendedSEXP, SEXP metadataSEXP, SEXP fnameSEXP) {
|
467
|
+
BEGIN_RCPP
|
468
|
+
Rcpp::RNGScope rcpp_rngScope_gen;
|
469
|
+
Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_obj(serialized_objSEXP);
|
470
|
+
Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_imputer(serialized_imputerSEXP);
|
471
|
+
Rcpp::traits::input_parameter< Rcpp::RawVector >::type serialized_indexer(serialized_indexerSEXP);
|
472
|
+
Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
|
473
|
+
Rcpp::traits::input_parameter< Rcpp::RawVector >::type metadata(metadataSEXP);
|
474
|
+
Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type fname(fnameSEXP);
|
475
|
+
serialize_to_file(serialized_obj, serialized_imputer, serialized_indexer, is_extended, metadata, fname);
|
476
|
+
return R_NilValue;
|
477
|
+
END_RCPP
|
478
|
+
}
|
479
|
+
// deserialize_from_file
|
480
|
+
Rcpp::List deserialize_from_file(Rcpp::CharacterVector fname);
|
481
|
+
RcppExport SEXP _isotree_deserialize_from_file(SEXP fnameSEXP) {
|
482
|
+
BEGIN_RCPP
|
483
|
+
Rcpp::RObject rcpp_result_gen;
|
484
|
+
Rcpp::RNGScope rcpp_rngScope_gen;
|
485
|
+
Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type fname(fnameSEXP);
|
486
|
+
rcpp_result_gen = Rcpp::wrap(deserialize_from_file(fname));
|
487
|
+
return rcpp_result_gen;
|
488
|
+
END_RCPP
|
489
|
+
}
|
490
|
+
// call_sort_csc_indices
|
491
|
+
void call_sort_csc_indices(Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr);
|
492
|
+
RcppExport SEXP _isotree_call_sort_csc_indices(SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP) {
|
493
|
+
BEGIN_RCPP
|
494
|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type Xc(XcSEXP);
|
495
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_ind(Xc_indSEXP);
|
496
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_indptr(Xc_indptrSEXP);
|
497
|
+
call_sort_csc_indices(Xc, Xc_ind, Xc_indptr);
|
498
|
+
return R_NilValue;
|
499
|
+
END_RCPP
|
500
|
+
}
|
501
|
+
// call_reconstruct_csr_sliced
|
502
|
+
void call_reconstruct_csr_sliced(Rcpp::NumericVector orig_Xr, Rcpp::IntegerVector orig_Xr_indptr, Rcpp::NumericVector rec_Xr, Rcpp::IntegerVector rec_Xr_indptr, size_t nrows);
|
503
|
+
RcppExport SEXP _isotree_call_reconstruct_csr_sliced(SEXP orig_XrSEXP, SEXP orig_Xr_indptrSEXP, SEXP rec_XrSEXP, SEXP rec_Xr_indptrSEXP, SEXP nrowsSEXP) {
|
504
|
+
BEGIN_RCPP
|
505
|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type orig_Xr(orig_XrSEXP);
|
506
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type orig_Xr_indptr(orig_Xr_indptrSEXP);
|
507
|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type rec_Xr(rec_XrSEXP);
|
508
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type rec_Xr_indptr(rec_Xr_indptrSEXP);
|
509
|
+
Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
|
510
|
+
call_reconstruct_csr_sliced(orig_Xr, orig_Xr_indptr, rec_Xr, rec_Xr_indptr, nrows);
|
511
|
+
return R_NilValue;
|
512
|
+
END_RCPP
|
513
|
+
}
|
514
|
+
// call_reconstruct_csr_with_categ
|
515
|
+
void call_reconstruct_csr_with_categ(Rcpp::NumericVector orig_Xr, Rcpp::IntegerVector orig_Xr_ind, Rcpp::IntegerVector orig_Xr_indptr, Rcpp::NumericVector rec_Xr, Rcpp::IntegerVector rec_Xr_ind, Rcpp::IntegerVector rec_Xr_indptr, Rcpp::IntegerVector rec_X_cat, Rcpp::IntegerVector cols_numeric, Rcpp::IntegerVector cols_categ, size_t nrows, size_t ncols);
|
516
|
+
RcppExport SEXP _isotree_call_reconstruct_csr_with_categ(SEXP orig_XrSEXP, SEXP orig_Xr_indSEXP, SEXP orig_Xr_indptrSEXP, SEXP rec_XrSEXP, SEXP rec_Xr_indSEXP, SEXP rec_Xr_indptrSEXP, SEXP rec_X_catSEXP, SEXP cols_numericSEXP, SEXP cols_categSEXP, SEXP nrowsSEXP, SEXP ncolsSEXP) {
|
517
|
+
BEGIN_RCPP
|
518
|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type orig_Xr(orig_XrSEXP);
|
519
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type orig_Xr_ind(orig_Xr_indSEXP);
|
520
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type orig_Xr_indptr(orig_Xr_indptrSEXP);
|
521
|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type rec_Xr(rec_XrSEXP);
|
522
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type rec_Xr_ind(rec_Xr_indSEXP);
|
523
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type rec_Xr_indptr(rec_Xr_indptrSEXP);
|
524
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type rec_X_cat(rec_X_catSEXP);
|
525
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type cols_numeric(cols_numericSEXP);
|
526
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type cols_categ(cols_categSEXP);
|
527
|
+
Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
|
528
|
+
Rcpp::traits::input_parameter< size_t >::type ncols(ncolsSEXP);
|
529
|
+
call_reconstruct_csr_with_categ(orig_Xr, orig_Xr_ind, orig_Xr_indptr, rec_Xr, rec_Xr_ind, rec_Xr_indptr, rec_X_cat, cols_numeric, cols_categ, nrows, ncols);
|
530
|
+
return R_NilValue;
|
531
|
+
END_RCPP
|
532
|
+
}
|
533
|
+
// deepcopy_vector
|
534
|
+
Rcpp::NumericVector deepcopy_vector(Rcpp::NumericVector inp);
|
535
|
+
RcppExport SEXP _isotree_deepcopy_vector(SEXP inpSEXP) {
|
536
|
+
BEGIN_RCPP
|
537
|
+
Rcpp::RObject rcpp_result_gen;
|
538
|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type inp(inpSEXP);
|
539
|
+
rcpp_result_gen = Rcpp::wrap(deepcopy_vector(inp));
|
540
|
+
return rcpp_result_gen;
|
541
|
+
END_RCPP
|
542
|
+
}
|
543
|
+
// call_take_cols_by_slice_csr
|
544
|
+
Rcpp::List call_take_cols_by_slice_csr(Rcpp::NumericVector Xr_, Rcpp::IntegerVector Xr_ind_, Rcpp::IntegerVector Xr_indptr, int ncols_take, bool as_dense);
|
545
|
+
RcppExport SEXP _isotree_call_take_cols_by_slice_csr(SEXP Xr_SEXP, SEXP Xr_ind_SEXP, SEXP Xr_indptrSEXP, SEXP ncols_takeSEXP, SEXP as_denseSEXP) {
|
546
|
+
BEGIN_RCPP
|
547
|
+
Rcpp::RObject rcpp_result_gen;
|
548
|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type Xr_(Xr_SEXP);
|
549
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xr_ind_(Xr_ind_SEXP);
|
550
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xr_indptr(Xr_indptrSEXP);
|
551
|
+
Rcpp::traits::input_parameter< int >::type ncols_take(ncols_takeSEXP);
|
552
|
+
Rcpp::traits::input_parameter< bool >::type as_dense(as_denseSEXP);
|
553
|
+
rcpp_result_gen = Rcpp::wrap(call_take_cols_by_slice_csr(Xr_, Xr_ind_, Xr_indptr, ncols_take, as_dense));
|
554
|
+
return rcpp_result_gen;
|
555
|
+
END_RCPP
|
556
|
+
}
|
557
|
+
// call_take_cols_by_index_csr
|
558
|
+
Rcpp::List call_take_cols_by_index_csr(Rcpp::NumericVector Xr, Rcpp::IntegerVector Xr_ind, Rcpp::IntegerVector Xr_indptr, Rcpp::IntegerVector cols_take, bool as_dense);
|
559
|
+
RcppExport SEXP _isotree_call_take_cols_by_index_csr(SEXP XrSEXP, SEXP Xr_indSEXP, SEXP Xr_indptrSEXP, SEXP cols_takeSEXP, SEXP as_denseSEXP) {
|
560
|
+
BEGIN_RCPP
|
561
|
+
Rcpp::RObject rcpp_result_gen;
|
562
|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type Xr(XrSEXP);
|
563
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xr_ind(Xr_indSEXP);
|
564
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xr_indptr(Xr_indptrSEXP);
|
565
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type cols_take(cols_takeSEXP);
|
566
|
+
Rcpp::traits::input_parameter< bool >::type as_dense(as_denseSEXP);
|
567
|
+
rcpp_result_gen = Rcpp::wrap(call_take_cols_by_index_csr(Xr, Xr_ind, Xr_indptr, cols_take, as_dense));
|
568
|
+
return rcpp_result_gen;
|
569
|
+
END_RCPP
|
570
|
+
}
|
571
|
+
// call_take_cols_by_slice_csc
|
572
|
+
Rcpp::List call_take_cols_by_slice_csc(Rcpp::NumericVector Xc, Rcpp::IntegerVector Xc_ind, Rcpp::IntegerVector Xc_indptr, size_t ncols_take, bool as_dense, size_t nrows);
|
573
|
+
RcppExport SEXP _isotree_call_take_cols_by_slice_csc(SEXP XcSEXP, SEXP Xc_indSEXP, SEXP Xc_indptrSEXP, SEXP ncols_takeSEXP, SEXP as_denseSEXP, SEXP nrowsSEXP) {
|
574
|
+
BEGIN_RCPP
|
575
|
+
Rcpp::RObject rcpp_result_gen;
|
576
|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type Xc(XcSEXP);
|
577
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_ind(Xc_indSEXP);
|
578
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_indptr(Xc_indptrSEXP);
|
579
|
+
Rcpp::traits::input_parameter< size_t >::type ncols_take(ncols_takeSEXP);
|
580
|
+
Rcpp::traits::input_parameter< bool >::type as_dense(as_denseSEXP);
|
581
|
+
Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
|
582
|
+
rcpp_result_gen = Rcpp::wrap(call_take_cols_by_slice_csc(Xc, Xc_ind, Xc_indptr, ncols_take, as_dense, nrows));
|
583
|
+
return rcpp_result_gen;
|
584
|
+
END_RCPP
|
585
|
+
}
|
586
|
+
// call_take_cols_by_index_csc
|
587
|
+
Rcpp::List call_take_cols_by_index_csc(Rcpp::NumericVector Xc_, Rcpp::IntegerVector Xc_ind_, Rcpp::IntegerVector Xc_indptr, Rcpp::IntegerVector cols_take, bool as_dense, size_t nrows);
|
588
|
+
RcppExport SEXP _isotree_call_take_cols_by_index_csc(SEXP Xc_SEXP, SEXP Xc_ind_SEXP, SEXP Xc_indptrSEXP, SEXP cols_takeSEXP, SEXP as_denseSEXP, SEXP nrowsSEXP) {
|
589
|
+
BEGIN_RCPP
|
590
|
+
Rcpp::RObject rcpp_result_gen;
|
591
|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type Xc_(Xc_SEXP);
|
592
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_ind_(Xc_ind_SEXP);
|
593
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_indptr(Xc_indptrSEXP);
|
594
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type cols_take(cols_takeSEXP);
|
595
|
+
Rcpp::traits::input_parameter< bool >::type as_dense(as_denseSEXP);
|
596
|
+
Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
|
597
|
+
rcpp_result_gen = Rcpp::wrap(call_take_cols_by_index_csc(Xc_, Xc_ind_, Xc_indptr, cols_take, as_dense, nrows));
|
598
|
+
return rcpp_result_gen;
|
599
|
+
END_RCPP
|
600
|
+
}
|
601
|
+
// copy_csc_cols_by_slice
|
602
|
+
void copy_csc_cols_by_slice(Rcpp::NumericVector out_Xc_, Rcpp::IntegerVector out_Xc_indptr, Rcpp::NumericVector from_Xc_, Rcpp::IntegerVector from_Xc_indptr, size_t n_copy);
|
603
|
+
RcppExport SEXP _isotree_copy_csc_cols_by_slice(SEXP out_Xc_SEXP, SEXP out_Xc_indptrSEXP, SEXP from_Xc_SEXP, SEXP from_Xc_indptrSEXP, SEXP n_copySEXP) {
|
604
|
+
BEGIN_RCPP
|
605
|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type out_Xc_(out_Xc_SEXP);
|
606
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type out_Xc_indptr(out_Xc_indptrSEXP);
|
607
|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type from_Xc_(from_Xc_SEXP);
|
608
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type from_Xc_indptr(from_Xc_indptrSEXP);
|
609
|
+
Rcpp::traits::input_parameter< size_t >::type n_copy(n_copySEXP);
|
610
|
+
copy_csc_cols_by_slice(out_Xc_, out_Xc_indptr, from_Xc_, from_Xc_indptr, n_copy);
|
611
|
+
return R_NilValue;
|
612
|
+
END_RCPP
|
613
|
+
}
|
614
|
+
// copy_csc_cols_by_index
|
615
|
+
void copy_csc_cols_by_index(Rcpp::NumericVector out_Xc_, Rcpp::IntegerVector out_Xc_indptr, Rcpp::NumericVector from_Xc_, Rcpp::IntegerVector from_Xc_indptr, Rcpp::IntegerVector cols_copy);
|
616
|
+
RcppExport SEXP _isotree_copy_csc_cols_by_index(SEXP out_Xc_SEXP, SEXP out_Xc_indptrSEXP, SEXP from_Xc_SEXP, SEXP from_Xc_indptrSEXP, SEXP cols_copySEXP) {
|
617
|
+
BEGIN_RCPP
|
618
|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type out_Xc_(out_Xc_SEXP);
|
619
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type out_Xc_indptr(out_Xc_indptrSEXP);
|
620
|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type from_Xc_(from_Xc_SEXP);
|
621
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type from_Xc_indptr(from_Xc_indptrSEXP);
|
622
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type cols_copy(cols_copySEXP);
|
623
|
+
copy_csc_cols_by_index(out_Xc_, out_Xc_indptr, from_Xc_, from_Xc_indptr, cols_copy);
|
624
|
+
return R_NilValue;
|
625
|
+
END_RCPP
|
626
|
+
}
|
627
|
+
// assign_csc_cols
|
628
|
+
Rcpp::List assign_csc_cols(Rcpp::NumericVector Xc_, Rcpp::IntegerVector Xc_ind_, Rcpp::IntegerVector Xc_indptr, Rcpp::IntegerVector X_cat_, Rcpp::IntegerVector cols_categ, Rcpp::IntegerVector cols_numeric, size_t nrows);
|
629
|
+
RcppExport SEXP _isotree_assign_csc_cols(SEXP Xc_SEXP, SEXP Xc_ind_SEXP, SEXP Xc_indptrSEXP, SEXP X_cat_SEXP, SEXP cols_categSEXP, SEXP cols_numericSEXP, SEXP nrowsSEXP) {
|
630
|
+
BEGIN_RCPP
|
631
|
+
Rcpp::RObject rcpp_result_gen;
|
632
|
+
Rcpp::traits::input_parameter< Rcpp::NumericVector >::type Xc_(Xc_SEXP);
|
633
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_ind_(Xc_ind_SEXP);
|
634
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type Xc_indptr(Xc_indptrSEXP);
|
635
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type X_cat_(X_cat_SEXP);
|
636
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type cols_categ(cols_categSEXP);
|
637
|
+
Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type cols_numeric(cols_numericSEXP);
|
638
|
+
Rcpp::traits::input_parameter< size_t >::type nrows(nrowsSEXP);
|
639
|
+
rcpp_result_gen = Rcpp::wrap(assign_csc_cols(Xc_, Xc_ind_, Xc_indptr, X_cat_, cols_categ, cols_numeric, nrows));
|
640
|
+
return rcpp_result_gen;
|
641
|
+
END_RCPP
|
642
|
+
}
|
643
|
+
// get_empty_tmat
|
644
|
+
Rcpp::NumericVector get_empty_tmat(int nrows_);
|
645
|
+
RcppExport SEXP _isotree_get_empty_tmat(SEXP nrows_SEXP) {
|
646
|
+
BEGIN_RCPP
|
647
|
+
Rcpp::RObject rcpp_result_gen;
|
648
|
+
Rcpp::traits::input_parameter< int >::type nrows_(nrows_SEXP);
|
649
|
+
rcpp_result_gen = Rcpp::wrap(get_empty_tmat(nrows_));
|
650
|
+
return rcpp_result_gen;
|
651
|
+
END_RCPP
|
652
|
+
}
|
653
|
+
// get_empty_int_mat
|
654
|
+
Rcpp::IntegerMatrix get_empty_int_mat(int nrows, int ncols);
|
655
|
+
RcppExport SEXP _isotree_get_empty_int_mat(SEXP nrowsSEXP, SEXP ncolsSEXP) {
|
656
|
+
BEGIN_RCPP
|
657
|
+
Rcpp::RObject rcpp_result_gen;
|
658
|
+
Rcpp::traits::input_parameter< int >::type nrows(nrowsSEXP);
|
659
|
+
Rcpp::traits::input_parameter< int >::type ncols(ncolsSEXP);
|
660
|
+
rcpp_result_gen = Rcpp::wrap(get_empty_int_mat(nrows, ncols));
|
661
|
+
return rcpp_result_gen;
|
662
|
+
END_RCPP
|
663
|
+
}
|
664
|
+
// get_null_int_mat
|
665
|
+
Rcpp::IntegerMatrix get_null_int_mat();
|
666
|
+
RcppExport SEXP _isotree_get_null_int_mat() {
|
667
|
+
BEGIN_RCPP
|
668
|
+
Rcpp::RObject rcpp_result_gen;
|
669
|
+
rcpp_result_gen = Rcpp::wrap(get_null_int_mat());
|
670
|
+
return rcpp_result_gen;
|
671
|
+
END_RCPP
|
672
|
+
}
|
673
|
+
// get_ntrees
|
674
|
+
int get_ntrees(SEXP model_R_ptr, bool is_extended);
|
675
|
+
RcppExport SEXP _isotree_get_ntrees(SEXP model_R_ptrSEXP, SEXP is_extendedSEXP) {
|
676
|
+
BEGIN_RCPP
|
677
|
+
Rcpp::RObject rcpp_result_gen;
|
678
|
+
Rcpp::traits::input_parameter< SEXP >::type model_R_ptr(model_R_ptrSEXP);
|
679
|
+
Rcpp::traits::input_parameter< bool >::type is_extended(is_extendedSEXP);
|
680
|
+
rcpp_result_gen = Rcpp::wrap(get_ntrees(model_R_ptr, is_extended));
|
681
|
+
return rcpp_result_gen;
|
682
|
+
END_RCPP
|
683
|
+
}
|
684
|
+
// deepcopy_int
|
685
|
+
SEXP deepcopy_int(SEXP x);
|
686
|
+
RcppExport SEXP _isotree_deepcopy_int(SEXP xSEXP) {
|
687
|
+
BEGIN_RCPP
|
688
|
+
Rcpp::RObject rcpp_result_gen;
|
689
|
+
Rcpp::traits::input_parameter< SEXP >::type x(xSEXP);
|
690
|
+
rcpp_result_gen = Rcpp::wrap(deepcopy_int(x));
|
691
|
+
return rcpp_result_gen;
|
692
|
+
END_RCPP
|
693
|
+
}
|
694
|
+
// modify_R_list_inplace
|
695
|
+
void modify_R_list_inplace(SEXP lst, int ix, SEXP el);
|
696
|
+
RcppExport SEXP _isotree_modify_R_list_inplace(SEXP lstSEXP, SEXP ixSEXP, SEXP elSEXP) {
|
697
|
+
BEGIN_RCPP
|
698
|
+
Rcpp::traits::input_parameter< SEXP >::type lst(lstSEXP);
|
699
|
+
Rcpp::traits::input_parameter< int >::type ix(ixSEXP);
|
700
|
+
Rcpp::traits::input_parameter< SEXP >::type el(elSEXP);
|
701
|
+
modify_R_list_inplace(lst, ix, el);
|
702
|
+
return R_NilValue;
|
703
|
+
END_RCPP
|
704
|
+
}
|
705
|
+
// addto_R_list_inplace
|
706
|
+
void addto_R_list_inplace(Rcpp::List& lst, Rcpp::String nm, SEXP el);
|
707
|
+
RcppExport SEXP _isotree_addto_R_list_inplace(SEXP lstSEXP, SEXP nmSEXP, SEXP elSEXP) {
|
708
|
+
BEGIN_RCPP
|
709
|
+
Rcpp::traits::input_parameter< Rcpp::List& >::type lst(lstSEXP);
|
710
|
+
Rcpp::traits::input_parameter< Rcpp::String >::type nm(nmSEXP);
|
711
|
+
Rcpp::traits::input_parameter< SEXP >::type el(elSEXP);
|
712
|
+
addto_R_list_inplace(lst, nm, el);
|
713
|
+
return R_NilValue;
|
714
|
+
END_RCPP
|
715
|
+
}
|
716
|
+
// R_has_openmp
|
717
|
+
bool R_has_openmp();
|
718
|
+
RcppExport SEXP _isotree_R_has_openmp() {
|
719
|
+
BEGIN_RCPP
|
720
|
+
Rcpp::RObject rcpp_result_gen;
|
721
|
+
rcpp_result_gen = Rcpp::wrap(R_has_openmp());
|
722
|
+
return rcpp_result_gen;
|
723
|
+
END_RCPP
|
724
|
+
}
|
286
725
|
|
287
726
|
static const R_CallMethodDef CallEntries[] = {
|
288
727
|
{"_isotree_deserialize_IsoForest", (DL_FUNC) &_isotree_deserialize_IsoForest, 1},
|
289
728
|
{"_isotree_deserialize_ExtIsoForest", (DL_FUNC) &_isotree_deserialize_ExtIsoForest, 1},
|
290
729
|
{"_isotree_deserialize_Imputer", (DL_FUNC) &_isotree_deserialize_Imputer, 1},
|
730
|
+
{"_isotree_deserialize_Indexer", (DL_FUNC) &_isotree_deserialize_Indexer, 1},
|
291
731
|
{"_isotree_check_null_ptr_model", (DL_FUNC) &_isotree_check_null_ptr_model, 1},
|
292
|
-
{"_isotree_fit_model", (DL_FUNC) &_isotree_fit_model,
|
293
|
-
{"_isotree_fit_tree", (DL_FUNC) &_isotree_fit_tree,
|
294
|
-
{"_isotree_predict_iso", (DL_FUNC) &_isotree_predict_iso,
|
295
|
-
{"_isotree_dist_iso", (DL_FUNC) &_isotree_dist_iso,
|
296
|
-
{"_isotree_impute_iso", (DL_FUNC) &_isotree_impute_iso,
|
732
|
+
{"_isotree_fit_model", (DL_FUNC) &_isotree_fit_model, 52},
|
733
|
+
{"_isotree_fit_tree", (DL_FUNC) &_isotree_fit_tree, 53},
|
734
|
+
{"_isotree_predict_iso", (DL_FUNC) &_isotree_predict_iso, 17},
|
735
|
+
{"_isotree_dist_iso", (DL_FUNC) &_isotree_dist_iso, 20},
|
736
|
+
{"_isotree_impute_iso", (DL_FUNC) &_isotree_impute_iso, 11},
|
737
|
+
{"_isotree_drop_imputer", (DL_FUNC) &_isotree_drop_imputer, 2},
|
738
|
+
{"_isotree_drop_indexer", (DL_FUNC) &_isotree_drop_indexer, 2},
|
739
|
+
{"_isotree_drop_reference_points", (DL_FUNC) &_isotree_drop_reference_points, 2},
|
740
|
+
{"_isotree_subset_trees", (DL_FUNC) &_isotree_subset_trees, 6},
|
741
|
+
{"_isotree_inplace_set_to_zero", (DL_FUNC) &_isotree_inplace_set_to_zero, 1},
|
297
742
|
{"_isotree_get_n_nodes", (DL_FUNC) &_isotree_get_n_nodes, 3},
|
298
|
-
{"_isotree_append_trees_from_other", (DL_FUNC) &_isotree_append_trees_from_other,
|
743
|
+
{"_isotree_append_trees_from_other", (DL_FUNC) &_isotree_append_trees_from_other, 12},
|
299
744
|
{"_isotree_model_to_sql", (DL_FUNC) &_isotree_model_to_sql, 9},
|
300
745
|
{"_isotree_model_to_sql_with_select_from", (DL_FUNC) &_isotree_model_to_sql_with_select_from, 8},
|
746
|
+
{"_isotree_copy_cpp_objects", (DL_FUNC) &_isotree_copy_cpp_objects, 5},
|
747
|
+
{"_isotree_build_tree_indices", (DL_FUNC) &_isotree_build_tree_indices, 4},
|
748
|
+
{"_isotree_check_node_indexer_has_distances", (DL_FUNC) &_isotree_check_node_indexer_has_distances, 1},
|
749
|
+
{"_isotree_set_reference_points", (DL_FUNC) &_isotree_set_reference_points, 12},
|
750
|
+
{"_isotree_check_node_indexer_has_references", (DL_FUNC) &_isotree_check_node_indexer_has_references, 1},
|
751
|
+
{"_isotree_get_num_references", (DL_FUNC) &_isotree_get_num_references, 1},
|
752
|
+
{"_isotree_get_null_R_pointer", (DL_FUNC) &_isotree_get_null_R_pointer, 0},
|
753
|
+
{"_isotree_serialize_to_file", (DL_FUNC) &_isotree_serialize_to_file, 6},
|
754
|
+
{"_isotree_deserialize_from_file", (DL_FUNC) &_isotree_deserialize_from_file, 1},
|
755
|
+
{"_isotree_call_sort_csc_indices", (DL_FUNC) &_isotree_call_sort_csc_indices, 3},
|
756
|
+
{"_isotree_call_reconstruct_csr_sliced", (DL_FUNC) &_isotree_call_reconstruct_csr_sliced, 5},
|
757
|
+
{"_isotree_call_reconstruct_csr_with_categ", (DL_FUNC) &_isotree_call_reconstruct_csr_with_categ, 11},
|
758
|
+
{"_isotree_deepcopy_vector", (DL_FUNC) &_isotree_deepcopy_vector, 1},
|
759
|
+
{"_isotree_call_take_cols_by_slice_csr", (DL_FUNC) &_isotree_call_take_cols_by_slice_csr, 5},
|
760
|
+
{"_isotree_call_take_cols_by_index_csr", (DL_FUNC) &_isotree_call_take_cols_by_index_csr, 5},
|
761
|
+
{"_isotree_call_take_cols_by_slice_csc", (DL_FUNC) &_isotree_call_take_cols_by_slice_csc, 6},
|
762
|
+
{"_isotree_call_take_cols_by_index_csc", (DL_FUNC) &_isotree_call_take_cols_by_index_csc, 6},
|
763
|
+
{"_isotree_copy_csc_cols_by_slice", (DL_FUNC) &_isotree_copy_csc_cols_by_slice, 5},
|
764
|
+
{"_isotree_copy_csc_cols_by_index", (DL_FUNC) &_isotree_copy_csc_cols_by_index, 5},
|
765
|
+
{"_isotree_assign_csc_cols", (DL_FUNC) &_isotree_assign_csc_cols, 7},
|
766
|
+
{"_isotree_get_empty_tmat", (DL_FUNC) &_isotree_get_empty_tmat, 1},
|
767
|
+
{"_isotree_get_empty_int_mat", (DL_FUNC) &_isotree_get_empty_int_mat, 2},
|
768
|
+
{"_isotree_get_null_int_mat", (DL_FUNC) &_isotree_get_null_int_mat, 0},
|
769
|
+
{"_isotree_get_ntrees", (DL_FUNC) &_isotree_get_ntrees, 2},
|
770
|
+
{"_isotree_deepcopy_int", (DL_FUNC) &_isotree_deepcopy_int, 1},
|
771
|
+
{"_isotree_modify_R_list_inplace", (DL_FUNC) &_isotree_modify_R_list_inplace, 3},
|
772
|
+
{"_isotree_addto_R_list_inplace", (DL_FUNC) &_isotree_addto_R_list_inplace, 3},
|
773
|
+
{"_isotree_R_has_openmp", (DL_FUNC) &_isotree_R_has_openmp, 0},
|
301
774
|
{NULL, NULL, 0}
|
302
775
|
};
|
303
776
|
|