isotree 0.2.2 → 0.3.0

data/vendor/isotree/src/{dealloc.cpp → headers_joined.hpp}

@@ -18,11 +18,29 @@
 *     [5] https://sourceforge.net/projects/iforest/
 *     [6] https://math.stackexchange.com/questions/3388518/expected-number-of-paths-required-to-separate-elements-in-a-binary-tree
 *     [7] Quinlan, J. Ross. C4. 5: programs for machine learning. Elsevier, 2014.
-*     [8] Cortes, David. "Distance approximation using Isolation Forests." arXiv preprint arXiv:1910.12362 (2019).
-*     [9] Cortes, David. "Imputing missing values with unsupervised random trees." arXiv preprint arXiv:1911.06646 (2019).
+*     [8] Cortes, David.
+*         "Distance approximation using Isolation Forests."
+*         arXiv preprint arXiv:1910.12362 (2019).
+*     [9] Cortes, David.
+*         "Imputing missing values with unsupervised random trees."
+*         arXiv preprint arXiv:1911.06646 (2019).
+*     [10] https://math.stackexchange.com/questions/3333220/expected-average-depth-in-random-binary-tree-constructed-top-to-bottom
+*     [11] Cortes, David.
+*          "Revisiting randomized choices in isolation forests."
+*          arXiv preprint arXiv:2110.13402 (2021).
+*     [12] Guha, Sudipto, et al.
+*          "Robust random cut forest based anomaly detection on streams."
+*          International conference on machine learning. PMLR, 2016.
+*     [13] Cortes, David.
+*          "Isolation forests: looking beyond tree depth."
+*          arXiv preprint arXiv:2111.11639 (2021).
+*     [14] Ting, Kai Ming, Yue Zhu, and Zhi-Hua Zhou.
+*          "Isolation kernel and its effect on SVM"
+*          Proceedings of the 24th ACM SIGKDD
+*          International Conference on Knowledge Discovery & Data Mining. 2018.
 * 
 *     BSD 2-Clause License
-*     Copyright (c) 2020, David Cortes
+*     Copyright (c) 2019-2022, David Cortes
 *     All rights reserved.
 *     Redistribution and use in source and binary forms, with or without
 *     modification, are permitted provided that the following conditions are met:
@@ -44,23 +62,21 @@
 */
 #include "isotree.hpp"
 
-/* Reason behind this file: Cython (as of v0.29) will not auto-deallocate
-   structs which are part of a cdef'd class, which produces a memory leak
-   but can be force-destructed. Unfortunately, Cython itself doesn't even
-   allow calling destructors for structs, so it has to be done externally.
-   These functions should otherwise have no reason to be. */
+#include "crit.hpp"
+#include "dist.hpp"
+#include "extended.hpp"
+#include "fit_model.hpp"
+#include "helpers_iforest.hpp"
+#include "impute.hpp"
+#include "isoforest.hpp"
+#include "mult.hpp"
+#include "predict.hpp"
+#include "ref_indexer.hpp"
+#include "utils.hpp"
 
-void dealloc_IsoForest(IsoForest &model_outputs)
-{
-    model_outputs.~IsoForest();
-}
-
-void dealloc_IsoExtForest(ExtIsoForest &model_outputs_ext)
-{
-    model_outputs_ext.~ExtIsoForest();
-}
-
-void dealloc_Imputer(Imputer &imputer)
-{
-    imputer.~Imputer();
-}
+/*  Note: Cython also defines these in its auto-generated code, and leads to
+    conflicts if they are not undefined and then included again.  */
+#ifdef _FOR_PYTHON
+    #undef likely
+    #undef unlikely
+#endif