gsl 1.15.3 → 1.16.0.6

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Files changed (446) hide show
  1. checksums.yaml +7 -0
  2. data/.gitignore +12 -0
  3. data/.travis.yml +24 -0
  4. data/AUTHORS +10 -2
  5. data/COPYING +341 -339
  6. data/ChangeLog +612 -554
  7. data/Gemfile +4 -0
  8. data/README.md +77 -0
  9. data/Rakefile +14 -93
  10. data/THANKS +1 -1
  11. data/examples/blas/blas.rb +1 -1
  12. data/examples/bspline.rb +3 -3
  13. data/examples/complex/functions.rb +4 -4
  14. data/examples/complex/mul.rb +1 -1
  15. data/examples/const/physconst.rb +4 -4
  16. data/examples/const/travel.rb +4 -4
  17. data/examples/eigen/nonsymmv.rb +1 -1
  18. data/examples/eigen/qhoscillator.rb +3 -3
  19. data/examples/fft/radix2.rb +1 -1
  20. data/examples/fft/real-halfcomplex.rb +3 -3
  21. data/examples/fft/real-halfcomplex2.rb +3 -3
  22. data/examples/fit/expfit.rb +1 -1
  23. data/examples/fit/multifit.rb +1 -1
  24. data/examples/fit/ndlinear.rb +44 -44
  25. data/examples/fit/nonlinearfit.rb +1 -1
  26. data/examples/fit/wlinear.rb +3 -3
  27. data/examples/function/function.rb +1 -1
  28. data/examples/function/min.rb +1 -1
  29. data/examples/function/synchrotron.rb +2 -2
  30. data/examples/gallery/koch.rb +1 -1
  31. data/examples/histogram/cauchy.rb +2 -2
  32. data/examples/histogram/exponential.rb +1 -1
  33. data/examples/histogram/histo3d.rb +1 -1
  34. data/examples/histogram/histogram-pdf.rb +2 -2
  35. data/examples/histogram/xexp.rb +1 -1
  36. data/examples/integration/ahmed.rb +2 -2
  37. data/examples/integration/cosmology.rb +7 -7
  38. data/examples/integration/friedmann.rb +4 -4
  39. data/examples/integration/qng.rb +1 -1
  40. data/examples/interp/demo.rb +2 -2
  41. data/examples/linalg/LQ_solve.rb +1 -1
  42. data/examples/linalg/LU.rb +1 -1
  43. data/examples/linalg/LU2.rb +1 -1
  44. data/examples/linalg/LU_narray.rb +1 -1
  45. data/examples/linalg/PTLQ.rb +1 -1
  46. data/examples/linalg/QRPT.rb +1 -1
  47. data/examples/linalg/chol.rb +1 -1
  48. data/examples/linalg/chol_narray.rb +1 -1
  49. data/examples/linalg/complex.rb +1 -1
  50. data/examples/math/elementary.rb +1 -1
  51. data/examples/math/functions.rb +1 -1
  52. data/examples/math/inf_nan.rb +1 -1
  53. data/examples/math/minmax.rb +1 -1
  54. data/examples/math/power.rb +1 -1
  55. data/examples/math/test.rb +1 -1
  56. data/examples/min.rb +1 -1
  57. data/examples/multimin/bundle.rb +1 -1
  58. data/examples/multimin/cqp.rb +17 -17
  59. data/examples/multiroot/fsolver3.rb +1 -1
  60. data/examples/odeiv/binarysystem.rb +12 -12
  61. data/examples/odeiv/demo.rb +3 -3
  62. data/examples/odeiv/frei1.rb +7 -7
  63. data/examples/odeiv/frei2.rb +4 -4
  64. data/examples/odeiv/oscillator.rb +1 -1
  65. data/examples/odeiv/sedov.rb +3 -3
  66. data/examples/odeiv/whitedwarf.rb +11 -11
  67. data/examples/permutation/ex1.rb +2 -2
  68. data/examples/permutation/permutation.rb +1 -1
  69. data/examples/poly/demo.rb +1 -1
  70. data/examples/random/diffusion.rb +1 -1
  71. data/examples/random/generator.rb +2 -2
  72. data/examples/random/randomwalk.rb +3 -3
  73. data/examples/random/rng.rb +1 -1
  74. data/examples/roots/bisection.rb +1 -1
  75. data/examples/roots/brent.rb +1 -1
  76. data/examples/roots/demo.rb +1 -1
  77. data/examples/roots/newton.rb +2 -2
  78. data/examples/roots/recombination.gp +0 -1
  79. data/examples/sf/hyperg.rb +1 -1
  80. data/examples/sf/sphbessel.rb +1 -1
  81. data/examples/sort/sort.rb +1 -1
  82. data/examples/tamu_anova.rb +4 -4
  83. data/examples/vector/add.rb +1 -1
  84. data/examples/vector/decimate.rb +1 -1
  85. data/examples/vector/gnuplot.rb +8 -8
  86. data/examples/vector/vector.rb +2 -2
  87. data/examples/wavelet/wavelet1.rb +1 -1
  88. data/ext/{alf.c → gsl_native/alf.c} +10 -10
  89. data/ext/{array.c → gsl_native/array.c} +70 -159
  90. data/ext/{array_complex.c → gsl_native/array_complex.c} +63 -66
  91. data/ext/{blas.c → gsl_native/blas.c} +2 -3
  92. data/ext/{blas1.c → gsl_native/blas1.c} +35 -36
  93. data/ext/{blas2.c → gsl_native/blas2.c} +57 -62
  94. data/ext/{blas3.c → gsl_native/blas3.c} +57 -58
  95. data/ext/{block.c → gsl_native/block.c} +14 -18
  96. data/ext/{block_source.c → gsl_native/block_source.h} +110 -112
  97. data/ext/gsl_native/bspline.c +122 -0
  98. data/ext/{bundle.c → gsl_native/bundle.c} +0 -0
  99. data/ext/{cdf.c → gsl_native/cdf.c} +79 -93
  100. data/ext/{cheb.c → gsl_native/cheb.c} +78 -89
  101. data/ext/{combination.c → gsl_native/combination.c} +11 -19
  102. data/ext/{common.c → gsl_native/common.c} +9 -41
  103. data/ext/{complex.c → gsl_native/complex.c} +116 -118
  104. data/ext/gsl_native/const.c +331 -0
  105. data/ext/{const_additional.c → gsl_native/const_additional.c} +13 -34
  106. data/ext/gsl_native/cqp.c +283 -0
  107. data/ext/{deriv.c → gsl_native/deriv.c} +25 -33
  108. data/ext/{dht.c → gsl_native/dht.c} +23 -31
  109. data/ext/{diff.c → gsl_native/diff.c} +26 -28
  110. data/ext/{dirac.c → gsl_native/dirac.c} +45 -46
  111. data/ext/{eigen.c → gsl_native/eigen.c} +1044 -1095
  112. data/ext/{error.c → gsl_native/error.c} +18 -18
  113. data/ext/gsl_native/extconf.rb +118 -0
  114. data/ext/{fft.c → gsl_native/fft.c} +197 -204
  115. data/ext/{fit.c → gsl_native/fit.c} +17 -18
  116. data/ext/gsl_native/fresnel.c +312 -0
  117. data/ext/{function.c → gsl_native/function.c} +37 -43
  118. data/ext/{geometry.c → gsl_native/geometry.c} +16 -16
  119. data/ext/{graph.c → gsl_native/graph.c} +39 -89
  120. data/ext/{gsl.c → gsl_native/gsl.c} +12 -33
  121. data/ext/{gsl_narray.c → gsl_native/gsl_narray.c} +20 -30
  122. data/ext/{histogram.c → gsl_native/histogram.c} +133 -160
  123. data/ext/{histogram2d.c → gsl_native/histogram2d.c} +78 -104
  124. data/ext/{histogram3d.c → gsl_native/histogram3d.c} +76 -76
  125. data/ext/{histogram3d_source.c → gsl_native/histogram3d_source.c} +196 -197
  126. data/ext/{histogram_find.c → gsl_native/histogram_find.c} +32 -34
  127. data/ext/{histogram_oper.c → gsl_native/histogram_oper.c} +43 -52
  128. data/ext/{ieee.c → gsl_native/ieee.c} +9 -21
  129. data/{include → ext/gsl_native/include}/rb_gsl.h +4 -26
  130. data/{include → ext/gsl_native/include}/rb_gsl_array.h +15 -39
  131. data/{include → ext/gsl_native/include}/rb_gsl_cheb.h +0 -2
  132. data/{include → ext/gsl_native/include}/rb_gsl_common.h +61 -61
  133. data/{include → ext/gsl_native/include}/rb_gsl_complex.h +1 -1
  134. data/{include → ext/gsl_native/include}/rb_gsl_const.h +0 -6
  135. data/ext/gsl_native/include/rb_gsl_dirac.h +6 -0
  136. data/{include → ext/gsl_native/include}/rb_gsl_eigen.h +1 -1
  137. data/{include → ext/gsl_native/include}/rb_gsl_fft.h +0 -13
  138. data/{include → ext/gsl_native/include}/rb_gsl_fit.h +0 -2
  139. data/{include → ext/gsl_native/include}/rb_gsl_function.h +0 -4
  140. data/{include → ext/gsl_native/include}/rb_gsl_graph.h +2 -4
  141. data/{include → ext/gsl_native/include}/rb_gsl_histogram.h +8 -8
  142. data/{include → ext/gsl_native/include}/rb_gsl_histogram3d.h +50 -50
  143. data/{include → ext/gsl_native/include}/rb_gsl_integration.h +1 -1
  144. data/{include → ext/gsl_native/include}/rb_gsl_interp.h +0 -5
  145. data/{include → ext/gsl_native/include}/rb_gsl_linalg.h +2 -6
  146. data/{include → ext/gsl_native/include}/rb_gsl_math.h +0 -6
  147. data/{include → ext/gsl_native/include}/rb_gsl_odeiv.h +0 -3
  148. data/{include → ext/gsl_native/include}/rb_gsl_poly.h +3 -7
  149. data/{include → ext/gsl_native/include}/rb_gsl_rational.h +1 -8
  150. data/{include → ext/gsl_native/include}/rb_gsl_rng.h +0 -1
  151. data/{include → ext/gsl_native/include}/rb_gsl_root.h +1 -1
  152. data/{include → ext/gsl_native/include}/rb_gsl_sf.h +39 -48
  153. data/{include → ext/gsl_native/include}/rb_gsl_statistics.h +1 -1
  154. data/{include → ext/gsl_native/include}/rb_gsl_tensor.h +0 -2
  155. data/{include → ext/gsl_native/include}/rb_gsl_with_narray.h +3 -1
  156. data/{include → ext/gsl_native/include}/templates_off.h +0 -0
  157. data/{include → ext/gsl_native/include}/templates_on.h +1 -1
  158. data/ext/{integration.c → gsl_native/integration.c} +164 -189
  159. data/ext/{interp.c → gsl_native/interp.c} +25 -38
  160. data/ext/gsl_native/jacobi.c +733 -0
  161. data/ext/{linalg.c → gsl_native/linalg.c} +462 -589
  162. data/ext/{linalg_complex.c → gsl_native/linalg_complex.c} +93 -106
  163. data/ext/{math.c → gsl_native/math.c} +48 -67
  164. data/ext/{matrix.c → gsl_native/matrix.c} +13 -16
  165. data/ext/{matrix_complex.c → gsl_native/matrix_complex.c} +119 -123
  166. data/ext/{matrix_double.c → gsl_native/matrix_double.c} +79 -82
  167. data/ext/{matrix_int.c → gsl_native/matrix_int.c} +53 -54
  168. data/ext/{matrix_source.c → gsl_native/matrix_source.h} +292 -318
  169. data/ext/{min.c → gsl_native/min.c} +45 -76
  170. data/ext/{monte.c → gsl_native/monte.c} +50 -64
  171. data/ext/{multifit.c → gsl_native/multifit.c} +142 -151
  172. data/ext/{multimin.c → gsl_native/multimin.c} +64 -92
  173. data/ext/{multimin_fsdf.c → gsl_native/multimin_fsdf.c} +16 -16
  174. data/ext/{multiroots.c → gsl_native/multiroots.c} +73 -76
  175. data/ext/{multiset.c → gsl_native/multiset.c} +4 -8
  176. data/ext/{ndlinear.c → gsl_native/ndlinear.c} +320 -321
  177. data/ext/{nmf.c → gsl_native/nmf.c} +11 -11
  178. data/ext/{nmf_wrap.c → gsl_native/nmf_wrap.c} +1 -1
  179. data/ext/{ntuple.c → gsl_native/ntuple.c} +23 -23
  180. data/ext/{odeiv.c → gsl_native/odeiv.c} +101 -116
  181. data/ext/gsl_native/ool.c +879 -0
  182. data/ext/{permutation.c → gsl_native/permutation.c} +39 -37
  183. data/ext/{poly.c → gsl_native/poly.c} +10 -13
  184. data/ext/{poly2.c → gsl_native/poly2.c} +16 -16
  185. data/ext/{poly_source.c → gsl_native/poly_source.h} +249 -293
  186. data/ext/{qrng.c → gsl_native/qrng.c} +9 -20
  187. data/ext/{randist.c → gsl_native/randist.c} +222 -247
  188. data/ext/{rational.c → gsl_native/rational.c} +12 -12
  189. data/ext/{rng.c → gsl_native/rng.c} +30 -47
  190. data/ext/{root.c → gsl_native/root.c} +47 -48
  191. data/ext/{sf.c → gsl_native/sf.c} +196 -244
  192. data/ext/{sf_airy.c → gsl_native/sf_airy.c} +2 -2
  193. data/ext/{sf_bessel.c → gsl_native/sf_bessel.c} +7 -7
  194. data/ext/{sf_clausen.c → gsl_native/sf_clausen.c} +1 -1
  195. data/ext/{sf_coulomb.c → gsl_native/sf_coulomb.c} +40 -40
  196. data/ext/{sf_coupling.c → gsl_native/sf_coupling.c} +30 -30
  197. data/ext/{sf_dawson.c → gsl_native/sf_dawson.c} +1 -1
  198. data/ext/{sf_debye.c → gsl_native/sf_debye.c} +1 -10
  199. data/ext/{sf_dilog.c → gsl_native/sf_dilog.c} +1 -1
  200. data/ext/{sf_elementary.c → gsl_native/sf_elementary.c} +3 -3
  201. data/ext/{sf_ellint.c → gsl_native/sf_ellint.c} +43 -43
  202. data/ext/{sf_elljac.c → gsl_native/sf_elljac.c} +3 -3
  203. data/ext/{sf_erfc.c → gsl_native/sf_erfc.c} +1 -5
  204. data/ext/{sf_exp.c → gsl_native/sf_exp.c} +3 -3
  205. data/ext/{sf_expint.c → gsl_native/sf_expint.c} +2 -12
  206. data/ext/{sf_fermi_dirac.c → gsl_native/sf_fermi_dirac.c} +1 -1
  207. data/ext/{sf_gamma.c → gsl_native/sf_gamma.c} +2 -6
  208. data/ext/{sf_gegenbauer.c → gsl_native/sf_gegenbauer.c} +1 -1
  209. data/ext/{sf_hyperg.c → gsl_native/sf_hyperg.c} +1 -1
  210. data/ext/{sf_laguerre.c → gsl_native/sf_laguerre.c} +4 -4
  211. data/ext/{sf_lambert.c → gsl_native/sf_lambert.c} +1 -1
  212. data/ext/{sf_legendre.c → gsl_native/sf_legendre.c} +1 -1
  213. data/ext/{sf_log.c → gsl_native/sf_log.c} +4 -4
  214. data/ext/gsl_native/sf_mathieu.c +235 -0
  215. data/ext/{sf_power.c → gsl_native/sf_power.c} +1 -1
  216. data/ext/{sf_psi.c → gsl_native/sf_psi.c} +3 -12
  217. data/ext/{sf_synchrotron.c → gsl_native/sf_synchrotron.c} +1 -1
  218. data/ext/{sf_transport.c → gsl_native/sf_transport.c} +1 -1
  219. data/ext/{sf_trigonometric.c → gsl_native/sf_trigonometric.c} +4 -4
  220. data/ext/{sf_zeta.c → gsl_native/sf_zeta.c} +1 -5
  221. data/ext/{signal.c → gsl_native/signal.c} +63 -68
  222. data/ext/{siman.c → gsl_native/siman.c} +45 -49
  223. data/ext/{sort.c → gsl_native/sort.c} +6 -7
  224. data/ext/{spline.c → gsl_native/spline.c} +28 -46
  225. data/ext/{stats.c → gsl_native/stats.c} +105 -118
  226. data/ext/{sum.c → gsl_native/sum.c} +34 -34
  227. data/ext/{tamu_anova.c → gsl_native/tamu_anova.c} +1 -1
  228. data/ext/{tensor.c → gsl_native/tensor.c} +8 -11
  229. data/ext/{tensor_source.c → gsl_native/tensor_source.h} +147 -148
  230. data/ext/{vector.c → gsl_native/vector.c} +11 -14
  231. data/ext/{vector_complex.c → gsl_native/vector_complex.c} +179 -184
  232. data/ext/{vector_double.c → gsl_native/vector_double.c} +178 -183
  233. data/ext/{vector_int.c → gsl_native/vector_int.c} +27 -29
  234. data/ext/{vector_source.c → gsl_native/vector_source.h} +428 -443
  235. data/ext/{wavelet.c → gsl_native/wavelet.c} +224 -246
  236. data/gsl.gemspec +29 -0
  237. data/lib/gsl.rb +8 -3
  238. data/lib/gsl/gnuplot.rb +3 -3
  239. data/lib/gsl/oper.rb +35 -60
  240. data/lib/gsl/version.rb +3 -0
  241. data/lib/rbgsl.rb +1 -3
  242. data/rdoc/alf.rdoc +5 -5
  243. data/rdoc/blas.rdoc +9 -9
  244. data/rdoc/bspline.rdoc +17 -17
  245. data/rdoc/changes.rdoc +4 -9
  246. data/rdoc/cheb.rdoc +25 -25
  247. data/rdoc/cholesky_complex.rdoc +21 -21
  248. data/rdoc/combi.rdoc +37 -37
  249. data/rdoc/complex.rdoc +22 -22
  250. data/rdoc/const.rdoc +47 -47
  251. data/rdoc/dht.rdoc +49 -49
  252. data/rdoc/diff.rdoc +42 -42
  253. data/rdoc/ehandling.rdoc +6 -6
  254. data/rdoc/eigen.rdoc +153 -153
  255. data/rdoc/fft.rdoc +146 -146
  256. data/rdoc/fit.rdoc +109 -109
  257. data/rdoc/function.rdoc +11 -11
  258. data/rdoc/graph.rdoc +17 -17
  259. data/rdoc/hist.rdoc +103 -103
  260. data/rdoc/hist2d.rdoc +42 -42
  261. data/rdoc/hist3d.rdoc +9 -9
  262. data/rdoc/integration.rdoc +110 -110
  263. data/rdoc/interp.rdoc +71 -71
  264. data/rdoc/intro.rdoc +8 -8
  265. data/rdoc/linalg.rdoc +188 -188
  266. data/rdoc/linalg_complex.rdoc +1 -1
  267. data/rdoc/math.rdoc +58 -58
  268. data/rdoc/matrix.rdoc +275 -275
  269. data/rdoc/min.rdoc +57 -57
  270. data/rdoc/monte.rdoc +22 -22
  271. data/rdoc/multimin.rdoc +95 -95
  272. data/rdoc/multiroot.rdoc +80 -80
  273. data/rdoc/narray.rdoc +32 -32
  274. data/rdoc/ndlinear.rdoc +54 -54
  275. data/rdoc/nonlinearfit.rdoc +100 -100
  276. data/rdoc/ntuple.rdoc +31 -31
  277. data/rdoc/odeiv.rdoc +88 -88
  278. data/rdoc/perm.rdoc +90 -90
  279. data/rdoc/poly.rdoc +66 -66
  280. data/rdoc/qrng.rdoc +21 -21
  281. data/rdoc/randist.rdoc +82 -82
  282. data/rdoc/ref.rdoc +57 -57
  283. data/rdoc/rng.rdoc +85 -85
  284. data/rdoc/roots.rdoc +57 -57
  285. data/rdoc/sf.rdoc +428 -428
  286. data/rdoc/siman.rdoc +19 -19
  287. data/rdoc/sort.rdoc +30 -30
  288. data/rdoc/start.rdoc +8 -8
  289. data/rdoc/stats.rdoc +52 -52
  290. data/rdoc/sum.rdoc +12 -12
  291. data/rdoc/tensor.rdoc +31 -31
  292. data/rdoc/tut.rdoc +1 -1
  293. data/rdoc/use.rdoc +39 -39
  294. data/rdoc/vector.rdoc +188 -188
  295. data/rdoc/vector_complex.rdoc +24 -24
  296. data/rdoc/wavelet.rdoc +46 -46
  297. data/test/gsl/blas_test.rb +79 -0
  298. data/test/gsl/bspline_test.rb +63 -0
  299. data/test/gsl/cdf_test.rb +1512 -0
  300. data/test/gsl/cheb_test.rb +80 -0
  301. data/test/gsl/combination_test.rb +100 -0
  302. data/test/gsl/complex_test.rb +20 -0
  303. data/test/gsl/const_test.rb +29 -0
  304. data/test/gsl/deriv_test.rb +62 -0
  305. data/test/gsl/dht_test.rb +79 -0
  306. data/test/gsl/diff_test.rb +53 -0
  307. data/test/gsl/eigen_test.rb +563 -0
  308. data/test/gsl/err_test.rb +23 -0
  309. data/test/gsl/fit_test.rb +101 -0
  310. data/test/gsl/histo_test.rb +14 -0
  311. data/test/gsl/index_test.rb +61 -0
  312. data/test/gsl/integration_test.rb +274 -0
  313. data/test/gsl/interp_test.rb +27 -0
  314. data/test/gsl/linalg_test.rb +463 -0
  315. data/test/gsl/matrix_nmf_test.rb +37 -0
  316. data/test/gsl/matrix_test.rb +98 -0
  317. data/test/gsl/min_test.rb +89 -0
  318. data/test/gsl/monte_test.rb +77 -0
  319. data/test/gsl/multifit_test.rb +753 -0
  320. data/test/gsl/multimin_test.rb +157 -0
  321. data/test/gsl/multiroot_test.rb +135 -0
  322. data/test/gsl/multiset_test.rb +52 -0
  323. data/test/gsl/odeiv_test.rb +275 -0
  324. data/test/gsl/oper_test.rb +98 -0
  325. data/test/gsl/poly_test.rb +338 -0
  326. data/test/gsl/qrng_test.rb +94 -0
  327. data/test/gsl/quartic_test.rb +28 -0
  328. data/test/gsl/randist_test.rb +122 -0
  329. data/test/gsl/rng_test.rb +303 -0
  330. data/test/gsl/roots_test.rb +78 -0
  331. data/test/gsl/sf_test.rb +2079 -0
  332. data/test/gsl/stats_test.rb +122 -0
  333. data/test/gsl/sum_test.rb +69 -0
  334. data/test/gsl/tensor_test.rb +396 -0
  335. data/test/gsl/vector_test.rb +223 -0
  336. data/test/gsl/wavelet_test.rb +130 -0
  337. data/test/gsl_test.rb +321 -0
  338. data/test/test_helper.rb +42 -0
  339. data/uncrustify.cfg +1693 -0
  340. metadata +337 -378
  341. data/README +0 -32
  342. data/VERSION +0 -1
  343. data/ext/bspline.c +0 -130
  344. data/ext/const.c +0 -673
  345. data/ext/cqp.c +0 -283
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@@ -1,19 +1,19 @@
1
1
  #
2
2
  # = Histograms
3
- # 1. {Histogram allocation}[link:files/rdoc/hist_rdoc.html#1]
4
- # 1. {Copying histograms}[link:files/rdoc/hist_rdoc.html#2]
5
- # 1. {Updating and accessing histogram elements}[link:files/rdoc/hist_rdoc.html#3]
6
- # 1. {Searching histogram ranges}[link:files/rdoc/hist_rdoc.html#4]
7
- # 1. {Histogram Statistics}[link:files/rdoc/hist_rdoc.html#5]
8
- # 1. {Histogram Operations}[link:files/rdoc/hist_rdoc.html#6]
9
- # 1. {Reading and writing histograms}[link:files/rdoc/hist_rdoc.html#7]
10
- # 1. {Extensions}[link:files/rdoc/hist_rdoc.html#8]
11
- # 1. {Histogram Operations}[link:files/rdoc/hist_rdoc.html#8.1]
12
- # 1. {Graph interface}[link:files/rdoc/hist_rdoc.html#8.2]
13
- # 1. {Histogram Fittings}[link:files/rdoc/hist_rdoc.html#8.3]
14
- # 1. {The histogram probability distribution}[link:files/rdoc/hist_rdoc.html#9]
15
- #
16
- # == {}[link:index.html"name="1] Histogram allocation
3
+ # 1. {Histogram allocation}[link:rdoc/hist_rdoc.html#label-Histogram+allocation]
4
+ # 1. {Copying histograms}[link:rdoc/hist_rdoc.html#label-Copying+Histograms]
5
+ # 1. {Updating and accessing histogram elements}[link:rdoc/hist_rdoc.html#label-Updating+and+accessing+histogram+elements]
6
+ # 1. {Searching histogram ranges}[link:rdoc/hist_rdoc.html#label-Searching+histogram+ranges]
7
+ # 1. {Histogram Statistics}[link:rdoc/hist_rdoc.html#label-Histogram+Statistics]
8
+ # 1. {Histogram Operations}[link:rdoc/hist_rdoc.html#label-Histogram+Operations]
9
+ # 1. {Reading and writing histograms}[link:rdoc/hist_rdoc.html#label-Reading+and+writing+histograms]
10
+ # 1. {Extensions}[link:rdoc/hist_rdoc.html#label-Extentions]
11
+ # 1. {Histogram Operations}[link:rdoc/hist_rdoc.html#label-Histogram+operations]
12
+ # 1. {Graph interface}[link:rdoc/hist_rdoc.html#label-Graphics]
13
+ # 1. {Histogram Fittings}[link:rdoc/hist_rdoc.html#label-Fitting]
14
+ # 1. {The histogram probability distribution}[link:rdoc/hist_rdoc.html#label-The+histogram+probability+distribution]
15
+ #
16
+ # == Histogram allocation
17
17
  # ---
18
18
  # * GSL::Histogram.alloc(n)
19
19
  # * GSL::Histogram.alloc(n, [xmin, xmax])
@@ -22,7 +22,7 @@
22
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  # * GSL::Histogram.alloc(array)
23
23
  # * GSL::Histogram.alloc(vector)
24
24
  #
25
- # Constructor for a histogram object with <tt>n</tt> bins.
25
+ # Constructor for a histogram object with <tt>n</tt> bins.
26
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  #
27
27
  # Examples:
28
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  #
@@ -33,24 +33,24 @@
33
33
  # [ bin[0] )[ bin[1] )[ bin[2] )[ bin[3] )
34
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  # |---------|---------|---------|---------|
35
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  # range[0] range[1] range[2] range[3] range[4]
36
- #
36
+ #
37
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  # 1. With an array or a vector:
38
38
  # h = Histogram.alloc([1, 3, 7, 9, 20]) <--- Histogram of 4 bins.
39
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  # The range is initialized as
40
40
  # range[0] = 1, range[1] = 3, ..., range[4] = 20.
41
- #
41
+ #
42
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  # 1. With size and the range [min, max]:
43
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  #
44
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  # >> h = Histogram.alloc(5, [0, 5])
45
45
  # >> h.range
46
- # => GSL::Histogram::Range:
46
+ # => GSL::Histogram::Range:
47
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  # [ 0.000e+00 1.000e+00 2.000e+00 3.000e+00 4.000e+00 5.000e+00 ]
48
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  # >> h.bin
49
- # => GSL::Histogram::Bin:
49
+ # => GSL::Histogram::Bin:
50
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  # [ 0.000e+00 0.000e+00 0.000e+00 0.000e+00 0.000e+00 ]
51
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  # >> h.increment(2.5)
52
52
  # >> h.bin
53
- # => GSL::Histogram::Bin:
53
+ # => GSL::Histogram::Bin:
54
54
  # [ 0.000e+00 0.000e+00 1.000e+00 0.000e+00 0.000e+00 ]
55
55
  #
56
56
  # ---
@@ -59,26 +59,26 @@
59
59
  # * GSL::Histogram.equal_bins_p(h1, h2)
60
60
  # * GSL::Histogram.equal_bins(h1, h2)
61
61
  #
62
- # Return 1 if the all of the individual bin ranges of the two histograms
62
+ # Return 1 if the all of the individual bin ranges of the two histograms
63
63
  # are identical, and 0 otherwise.
64
64
  # ---
65
65
  # * GSL::Histogram.equal_bins_p?(h1, h2)
66
66
  # * GSL::Histogram.equal_bins?(h1, h2)
67
67
  #
68
- # Return <tt>true</tt> if the all of the individual bin ranges of the two histograms
68
+ # Return <tt>true</tt> if the all of the individual bin ranges of the two histograms
69
69
  # are identical, and <tt>false</tt> otherwise.
70
70
  #
71
71
  # ---
72
72
  # * GSL::Histogram#set_ranges(v)
73
73
  #
74
- # This sets the ranges of the existing histogram using a {GSL::Vector}[link:files/rdoc/vector_rdoc.html] object.
74
+ # This sets the ranges of the existing histogram using a {GSL::Vector}[link:rdoc/vector_rdoc.html] object.
75
75
  # ---
76
76
  # * GSL::Histogram#set_ranges_uniform(xmin, xmax)
77
77
  # * GSL::Histogram#set_ranges_uniform([xmin, xmax])
78
78
  #
79
- # This method sets the ranges of the existing histogram <tt>self</tt>
80
- # to cover the range <tt>xmin</tt> to <tt>xmax</tt> uniformly.
81
- # The values of the histogram bins are reset to zero.
79
+ # This method sets the ranges of the existing histogram <tt>self</tt>
80
+ # to cover the range <tt>xmin</tt> to <tt>xmax</tt> uniformly.
81
+ # The values of the histogram bins are reset to zero.
82
82
  # The bin ranges are shown as below,
83
83
  # bin[0] corresponds to xmin <= x < xmin + d
84
84
  # bin[1] corresponds to xmin + d <= x < xmin + 2 d
@@ -86,20 +86,20 @@
86
86
  # bin[n-1] corresponds to xmin + (n-1)d <= x < xmax
87
87
  # where d is the bin spacing, d = (xmax-xmin)/n.
88
88
  #
89
- # == {}[link:index.html"name="2] Copying Histograms
89
+ # == Copying Histograms
90
90
  # ---
91
91
  # * GSL::Histogram.memcpy(dest, src)
92
92
  #
93
- # Copies the histogram <tt>src</tt> into the pre-existing histogram <tt>dest</tt>,
94
- # making dest into an exact copy of <tt>src</tt>.
95
- # The two histograms must be of the same size.
93
+ # Copies the histogram <tt>src</tt> into the pre-existing histogram <tt>dest</tt>,
94
+ # making dest into an exact copy of <tt>src</tt>.
95
+ # The two histograms must be of the same size.
96
96
  # ---
97
97
  # * GSL::Histogram#clone
98
98
  #
99
- # Returns a newly created histogram which is an exact copy of the histogram
99
+ # Returns a newly created histogram which is an exact copy of the histogram
100
100
  # <tt>self</tt>.
101
101
  #
102
- # == {}[link:index.html"name="3] Updating and accessing histogram elements
102
+ # == Updating and accessing histogram elements
103
103
  # ---
104
104
  # * GSL::Histogram#increment(x, weight = 1)
105
105
  # * GSL::Histogram#fill(x, weight = 1)
@@ -107,10 +107,10 @@
107
107
  #
108
108
  # These methods updates the histogram <tt>self</tt> by adding <tt>weight</tt>
109
109
  # (default = 1) to the bin whose range contains the coordinate <tt>x</tt>.
110
- # If <tt>x</tt> is an instance of <tt>GSL::Vector</tt> or <tt>Array</tt>,
110
+ # If <tt>x</tt> is an instance of <tt>GSL::Vector</tt> or <tt>Array</tt>,
111
111
  # all the elements are filled into the histogram.
112
- # If <tt>x</tt> is less than (greater than) the lower limit (upper limit)
113
- # of the histogram then none of bins are modified.
112
+ # If <tt>x</tt> is less than (greater than) the lower limit (upper limit)
113
+ # of the histogram then none of bins are modified.
114
114
  #
115
115
  # ---
116
116
  # * GSL::Histogram#increment2(x, weight = 1)
@@ -118,27 +118,27 @@
118
118
  # * GSL::Histogram#accumulate2(x, weight = 1)
119
119
  #
120
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  # These methods updates the histogram <tt>self</tt> by adding <tt>weight</tt>
121
- # to the bin whose range contains the coordinate <tt>x</tt>.
121
+ # to the bin whose range contains the coordinate <tt>x</tt>.
122
122
  # If <tt>x</tt> is less than the lower limit, the lowest bin is incremented.
123
123
  # If <tt>x</tt> is greater than the upper limit, the highest bin is incremented.
124
124
  #
125
125
  # ---
126
126
  # * GSL::Histogram#get(i)
127
- # * GSL::Histogram#[i]
127
+ # * \GSL::Histogram#[i]
128
128
  #
129
- # These methods return the contents of the <tt>i</tt>-th bin of the histogram
129
+ # These methods return the contents of the <tt>i</tt>-th bin of the histogram
130
130
  # <tt>self</tt>.
131
131
  #
132
132
  # ---
133
133
  # * GSL::Hiatogram#get_range(i)
134
134
  #
135
- # This method finds the upper and lower range limits of the <tt>i</tt>-th bin
135
+ # This method finds the upper and lower range limits of the <tt>i</tt>-th bin
136
136
  # of the histogram <tt>self</tt>, and returns an array [<tt>lower, upper</tt>].
137
137
  #
138
138
  # ---
139
139
  # * GSL::Histogram#range
140
140
  #
141
- # This returns a <tt>Vector::View</tt> object as a reference to the pointer
141
+ # This returns a <tt>Vector::View</tt> object as a reference to the pointer
142
142
  # <tt>double *range</tt> in the <tt>gsl_histogram</tt> struct.
143
143
  #
144
144
  # ---
@@ -151,7 +151,7 @@
151
151
  # * GSL::Histogram#min
152
152
  # * GSL::Histogram#bins
153
153
  #
154
- # These methods return the maximum upper and minimum lower range
154
+ # These methods return the maximum upper and minimum lower range
155
155
  # limits and the number of bins of the histogram <tt>self</tt>.
156
156
  #
157
157
  # ---
@@ -159,14 +159,14 @@
159
159
  #
160
160
  # This method resets all the bins in the histogram <tt>self</tt> to zero.
161
161
  #
162
- # == {}[link:index.html"name="4] Searching histogram ranges
162
+ # == Searching histogram ranges
163
163
  # ---
164
164
  # * GSL::Histogram#find(x)
165
165
  #
166
- # This method finds and sets the index i to the bin number which
166
+ # This method finds and sets the index i to the bin number which
167
167
  # covers the coordinate <tt>x</tt> in the histogram <tt>self</tt>.
168
168
  #
169
- # == {}[link:index.html"name="5] Histogram Statistics
169
+ # == Histogram Statistics
170
170
  # ---
171
171
  # * GSL::Histogram#max_val
172
172
  #
@@ -175,8 +175,8 @@
175
175
  # ---
176
176
  # * GSL::Histogram#max_bin
177
177
  #
178
- # This returns the index of the bin containing the maximum value.
179
- # In the case where several bins contain the same maximum value the
178
+ # This returns the index of the bin containing the maximum value.
179
+ # In the case where several bins contain the same maximum value the
180
180
  # smallest index is returned.
181
181
  #
182
182
  # ---
@@ -187,24 +187,24 @@
187
187
  # ---
188
188
  # * GSL::Histogram#min_bin
189
189
  #
190
- # This returns the index of the bin containing the minimum value.
191
- # In the case where several bins contain the same maximum value
190
+ # This returns the index of the bin containing the minimum value.
191
+ # In the case where several bins contain the same maximum value
192
192
  # the smallest index is returned.
193
193
  #
194
194
  # ---
195
195
  # * GSL::Histogram#mean
196
196
  #
197
- # This returns the mean of the histogrammed variable,
198
- # where the histogram is regarded as a probability distribution.
199
- # Negative bin values are ignored for the purposes of this calculation.
197
+ # This returns the mean of the histogrammed variable,
198
+ # where the histogram is regarded as a probability distribution.
199
+ # Negative bin values are ignored for the purposes of this calculation.
200
200
  # The accuracy of the result is limited by the bin width.
201
201
  #
202
202
  # ---
203
203
  # * GSL::Histogram#sigma
204
204
  #
205
- # This function returns the standard deviation of the histogrammed variable,
206
- # where the histogram is regarded as a probability distribution.
207
- # Negative bin values are ignored for the purposes of this calculation.
205
+ # This function returns the standard deviation of the histogrammed variable,
206
+ # where the histogram is regarded as a probability distribution.
207
+ # Negative bin values are ignored for the purposes of this calculation.
208
208
  # The accuracy of the result is limited by the bin width.
209
209
  #
210
210
  # ---
@@ -214,7 +214,7 @@
214
214
  # to the <tt>iend</tt>-th bin.
215
215
  #
216
216
  #
217
- # == {}[link:index.html"name="6] Histogram Operations
217
+ # == Histogram Operations
218
218
  #
219
219
  # ---
220
220
  # * GSL::Histogram#add(h2)
@@ -226,7 +226,7 @@
226
226
  #
227
227
  #
228
228
  #
229
- # == {}[link:index.html"name="7] Reading and writing histograms
229
+ # == Reading and writing histograms
230
230
  # ---
231
231
  # * GSL::Histogram#fwrite(io)
232
232
  # * GSL::Histogram#fwrite(filename)
@@ -238,8 +238,8 @@
238
238
  # * GSL::Histogram#fscanf(filename)
239
239
  #
240
240
  #
241
- # == {}[link:index.html"name="8] Extentions
242
- # === {}[link:index.html"name="8.1] Histogram operations
241
+ # == Extentions
242
+ # === Histogram operations
243
243
  # ---
244
244
  # * GSL::Histogram#normalize
245
245
  #
@@ -250,43 +250,43 @@
250
250
  # * GSL::Histogram#rebin(m = 2)
251
251
  #
252
252
  # This method creates a new histogram merging <tt>m</tt> bins in one in the
253
- # histogram <tt>self</tt>. This method cannot be used for histograms of
254
- # non-uniform bin size. If <tt>m</tt> is not an exact divider of the number
253
+ # histogram <tt>self</tt>. This method cannot be used for histograms of
254
+ # non-uniform bin size. If <tt>m</tt> is not an exact divider of the number
255
255
  # of bins of <tt>self</tt>, the range of the rebinned histogram is extended
256
256
  # not to lose the entries in the last <tt>m-1</tt> (at most) bins.
257
257
  #
258
258
  # Example: a histogram <tt>h</tt> of size 5 with the range [0, 5), binned as
259
259
  #
260
- # GSL::Histogram::Range:
260
+ # GSL::Histogram::Range:
261
261
  # [ 0.000e+00 1.000e+00 2.000e+00 3.000e+00 4.000e+00 5.000e+00 ]
262
- # GSL::Histogram::Bin:
262
+ # GSL::Histogram::Bin:
263
263
  # [ 0.000e+00 3.000e+00 1.000e+00 1.000e+00 3.000e+00 ]
264
- #
265
- # When a new histogram is created merging two bins into one as
264
+ #
265
+ # When a new histogram is created merging two bins into one as
266
266
  # <tt>h2 = h.rebin</tt>, then <tt>h2</tt> looks like
267
267
  #
268
- # GSL::Histogram::Range:
268
+ # GSL::Histogram::Range:
269
269
  # [ 0.000e+00 2.000e+00 4.000e+00 6.000e+00 ]
270
- # GSL::Histogram::Bin:
270
+ # GSL::Histogram::Bin:
271
271
  # [ 3.000e+00 2.000e+00 3.000e+00 ]
272
272
  #
273
273
  # ---
274
274
  # * GSL::Histogram#reverse
275
275
  #
276
- # This method create a new histogram reversing the order of the range and the bin of
276
+ # This method create a new histogram reversing the order of the range and the bin of
277
277
  # histogram <tt>self</tt>.
278
- #
278
+ #
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  # ---
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  # * GSL::Histogram#integrate(istart = 0, iend = n-1)
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  # * GSL::Histogram#integrate([istart, iend])
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  # * GSL::Histogram#integrate(direction = 1 or -1)
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  #
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  # This method calculates cumulative counts of the histogram <tt>self</tt>
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- # from the <tt>istart</tt>-th bin to the <tt>iend</tt>-th bin (<tt>iend</tt> inclusive),
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- # and returns a <tt>GSL::Histogram::Integral</tt>
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- # object. If <tt>istart <= iend</tt> (or <tt>direction == 1</tt>),
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- # the <tt>i</tt>-th bin value of a
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- # <tt>GSL::Histogram::Integral</tt> object <tt>hi</tt> created from a
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+ # from the <tt>istart</tt>-th bin to the <tt>iend</tt>-th bin (<tt>iend</tt> inclusive),
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+ # and returns a <tt>GSL::Histogram::Integral</tt>
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+ # object. If <tt>istart <= iend</tt> (or <tt>direction == 1</tt>),
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+ # the <tt>i</tt>-th bin value of a
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+ # <tt>GSL::Histogram::Integral</tt> object <tt>hi</tt> created from a
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  # <tt>GSL::Histogram</tt> <tt>h</tt> is given by <tt>hi[i] = hi[i-1] + h[i]</tt>.
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  # If <tt>istart > iend</tt> (or <tt>direction == -1</tt>), <tt>hi[i] = hi[i+1] = h[i]</tt>.
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  #
@@ -294,19 +294,19 @@
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  # * GSL::Histogram::Integral#differentiate
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  # * GSL::Histogram::Integral#diff
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  #
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- # === {}[link:index.html"name="8.2] Graphics
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+ # === Graphics
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  # ---
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  # * GSL::Histogram#graph(options)
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  #
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  # This method uses the GNU plotutils <tt>graph</tt> to draw the histogram <tt>self</tt>.
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  # The options as "-T X -C -l x" etc are given by a String.
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  #
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- # === {}[link:index.html"name="8.3] Fitting
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+ # === Fitting
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  # ---
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  # * GSL::Histogram#fit_exponential(binstart = 0, binend = n-1)
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  #
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- # This method fits the histogram <tt>self</tt> to an exponential model
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- # <tt>h[n] = a exp(b x[n])</tt> using the bins of indices from <tt>binstart</tt>
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+ # This method fits the histogram <tt>self</tt> to an exponential model
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+ # <tt>h[n] = a exp(b x[n])</tt> using the bins of indices from <tt>binstart</tt>
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  # to <tt>binend</tt>. The result is returned as an Array of 6 elements,
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  # <tt>[a, b, erra, errb, sumsq, dof]</tt>, where
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  # * <tt>a</tt>: scale factor
@@ -318,8 +318,8 @@
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  # ---
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  # * GSL::Histogram#fit_power(binstart = 0, binend = n-1)
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  #
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- # This method fits the histogram <tt>self</tt> to a power-law model
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- # <tt>h[n] = a x[n]^b</tt> using the bins of indices from <tt>binstart</tt>
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+ # This method fits the histogram <tt>self</tt> to a power-law model
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+ # <tt>h[n] = a x[n]^b</tt> using the bins of indices from <tt>binstart</tt>
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  # to <tt>binend</tt>. The result is returned as an Array of 6 elements,
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  # <tt>[a, b, erra, errb, sumsq, dof]</tt>.
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  #
@@ -328,8 +328,8 @@
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  #
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  # This method fits the histogram <tt>self</tt> to Gaussian distribution
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  # using the bins of indices from <tt>binstart</tt> to <tt>binend</tt>,
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- # and returns an Array of 8 elements,
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- # <tt>[sigma, mean, height, errsig, errmean, errhei, sumsq, dof]</tt>.
331
+ # and returns an Array of 8 elements,
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+ # <tt>[sigma, mean, height, errsig, errmean, errhei, sumsq, dof]</tt>.
333
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  #
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  # Example:
335
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  # #!/usr/bin/env ruby
@@ -348,40 +348,40 @@
348
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  # y = height*Ran::gaussian_pdf(x-mean, sigma)
349
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  # GSL::graph(h, [x, y], "-T X -C -g 3")
350
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  #
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- # == {}[link:index.html"name="9] The histogram probability distribution
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- # The probability distribution function for a histogram consists of a set of bins
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- # which measure the probability of an event falling into a given range of
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+ # == The histogram probability distribution
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+ # The probability distribution function for a histogram consists of a set of bins
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+ # which measure the probability of an event falling into a given range of
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  # a continuous variable x. A probability distribution function is defined
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- # by the following class, which actually stores the cumulative probability
356
- # distribution function. This is the natural quantity for generating samples
357
- # via the inverse transform method, because there is a one-to-one mapping
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- # between the cumulative probability distribution and the range [0,1].
359
- # It can be shown that by taking a uniform random number in this
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- # range and finding its corresponding coordinate in the cumulative probability
355
+ # by the following class, which actually stores the cumulative probability
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+ # distribution function. This is the natural quantity for generating samples
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+ # via the inverse transform method, because there is a one-to-one mapping
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+ # between the cumulative probability distribution and the range [0,1].
359
+ # It can be shown that by taking a uniform random number in this
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+ # range and finding its corresponding coordinate in the cumulative probability
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  # distribution we obtain samples with the desired probability distribution.
362
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  #
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- # === {}[link:index.html"name="9.1] GSL::Histogram::Pdf class
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+ # === Pdf class
364
364
  # ---
365
365
  # * GSL::Histogram::Pdf.alloc(n)
366
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  # * GSL::Histogram::Pdf.alloc(h)
367
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  #
368
- # Constructors. If a histogram <tt>h</tt> is given,
368
+ # Constructors. If a histogram <tt>h</tt> is given,
369
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  # the probability distribution is initialized with the contents of <tt>h</tt>.
370
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  #
371
371
  # ---
372
372
  # * GSL::Histogram::Pdf#init(h)
373
373
  #
374
- # This initializes the probability distribution <tt>self</tt> with the contents
375
- # of the histogram <tt>h</tt>.
374
+ # This initializes the probability distribution <tt>self</tt> with the contents
375
+ # of the histogram <tt>h</tt>.
376
376
  #
377
377
  # ---
378
378
  # * GSL::Histogram::Pdf#sample(r)
379
379
  #
380
- # This method uses <tt>r</tt>, a uniform random number between zero and one,
381
- # to compute a single random sample from the probability distribution <tt>self</tt>.
380
+ # This method uses <tt>r</tt>, a uniform random number between zero and one,
381
+ # to compute a single random sample from the probability distribution <tt>self</tt>.
382
382
  # The algorithm used to compute the sample s is given by the following formula,
383
383
  # s = range[i] + delta * (range[i+1] - range[i])
384
- # where i is the index which satisfies
384
+ # where i is the index which satisfies
385
385
  # <tt>sum[i] <= r < sum[i+1]</tt> and <tt>delta</tt> is <tt>(r - sum[i])/(sum[i+1] - sum[i])</tt>.
386
386
  #
387
387
  # ---
@@ -392,18 +392,18 @@
392
392
  # ---
393
393
  # * GSL::Histogram:Pdf#range
394
394
  #
395
- # This returns a <tt>Vector::View</tt> object as a reference to the pointer
395
+ # This returns a <tt>Vector::View</tt> object as a reference to the pointer
396
396
  # <tt>double *range</tt> in the <tt>gsl_histogram_pdf</tt> struct.
397
397
  # ---
398
398
  # * GSL::Histogram:Pdf#sum
399
399
  #
400
- # This returns a <tt>Vector::View</tt> object as a reference to the pointer
400
+ # This returns a <tt>Vector::View</tt> object as a reference to the pointer
401
401
  # <tt>double *sum</tt> in the <tt>gsl_histogram_pdf</tt> struct.
402
402
  #
403
- # {prev}[link:files/rdoc/stats_rdoc.html]
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- # {next}[link:files/rdoc/hist2d_rdoc.html]
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+ # {prev}[link:rdoc/stats_rdoc.html]
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+ # {next}[link:rdoc/hist2d_rdoc.html]
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  #
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- # {Reference index}[link:files/rdoc/ref_rdoc.html]
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- # {top}[link:files/rdoc/index_rdoc.html]
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+ # {Reference index}[link:rdoc/ref_rdoc.html]
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+ # {top}[link:index.html]
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  #
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  #